Query 039311
Match_columns 909
No_of_seqs 605 out of 5263
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 14:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.5E-33 1.5E-37 327.5 17.9 238 13-260 199-473 (549)
2 4eco_A Uncharacterized protein 100.0 9.7E-30 3.3E-34 305.3 22.5 320 334-660 199-598 (636)
3 3rgz_A Protein brassinosteroid 100.0 2.4E-28 8.3E-33 299.9 29.6 350 307-666 121-531 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 6.3E-29 2.2E-33 303.5 22.2 331 339-688 447-838 (876)
5 4eco_A Uncharacterized protein 100.0 1.1E-28 3.7E-33 296.2 21.9 331 349-688 192-598 (636)
6 3rgz_A Protein brassinosteroid 100.0 4.7E-28 1.6E-32 297.4 26.7 350 308-667 174-556 (768)
7 3t6q_A CD180 antigen; protein- 100.0 2.8E-27 9.6E-32 283.3 32.8 343 287-639 34-460 (606)
8 4ecn_A Leucine-rich repeat pro 100.0 1.8E-27 6.1E-32 290.7 27.2 338 305-662 441-840 (876)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8E-27 2.7E-31 279.4 32.1 359 286-659 32-507 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-26 4.6E-31 277.4 31.5 360 285-668 55-539 (606)
11 3t6q_A CD180 antigen; protein- 100.0 1E-26 3.5E-31 278.5 29.8 347 304-660 97-534 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 2.4E-26 8.3E-31 273.1 31.4 367 287-666 29-510 (570)
13 2z81_A CD282 antigen, TOLL-lik 99.9 5.1E-27 1.8E-31 277.6 24.6 372 286-688 26-508 (549)
14 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-26 4.1E-31 272.5 23.2 349 286-660 21-479 (520)
15 2z63_A TOLL-like receptor 4, v 99.9 1.4E-25 4.8E-30 266.5 27.9 360 286-660 52-529 (570)
16 4fmz_A Internalin; leucine ric 99.9 1.9E-25 6.6E-30 247.9 27.2 279 308-639 40-322 (347)
17 2z81_A CD282 antigen, TOLL-lik 99.9 5.4E-26 1.8E-30 268.8 23.5 346 312-665 26-446 (549)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-25 3.8E-30 264.3 25.3 348 312-688 21-479 (520)
19 3v47_A TOLL-like receptor 5B a 99.9 6.7E-26 2.3E-30 261.4 23.0 339 312-660 30-406 (455)
20 1ziw_A TOLL-like receptor 3; i 99.9 8E-25 2.7E-29 265.7 32.4 346 286-639 25-441 (680)
21 3v47_A TOLL-like receptor 5B a 99.9 3.4E-25 1.2E-29 255.5 27.7 341 286-645 30-412 (455)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.4E-25 8.3E-30 263.8 26.8 349 286-660 52-508 (562)
23 1o6v_A Internalin A; bacterial 99.9 5.8E-25 2E-29 254.3 28.1 321 307-660 63-386 (466)
24 4fmz_A Internalin; leucine ric 99.9 3.5E-25 1.2E-29 245.7 25.1 298 286-639 44-344 (347)
25 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-26 4.4E-31 300.9 14.6 234 14-258 195-452 (1249)
26 1o6v_A Internalin A; bacterial 99.9 1.8E-24 6E-29 250.2 28.5 317 309-660 43-364 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-24 6E-29 256.4 29.0 331 312-668 52-491 (562)
28 3o6n_A APL1; leucine-rich repe 99.9 1.4E-24 4.9E-29 245.0 26.8 296 340-658 45-348 (390)
29 1ziw_A TOLL-like receptor 3; i 99.9 4E-24 1.4E-28 259.5 32.3 178 478-667 383-577 (680)
30 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-24 6.4E-29 268.2 29.5 241 285-531 23-322 (844)
31 1vt4_I APAF-1 related killer D 99.9 1.3E-26 4.3E-31 275.4 8.8 220 8-251 190-436 (1221)
32 3oja_B Anopheles plasmodium-re 99.9 2.3E-24 7.8E-29 257.0 26.1 301 311-639 50-356 (597)
33 2id5_A Lingo-1, leucine rich r 99.9 3.6E-24 1.2E-28 248.5 25.1 288 339-639 31-331 (477)
34 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-23 4.4E-28 260.7 31.4 326 310-657 22-409 (844)
35 3o6n_A APL1; leucine-rich repe 99.9 9.3E-24 3.2E-28 238.3 26.3 302 310-639 43-350 (390)
36 1jl5_A Outer protein YOPM; leu 99.9 1.6E-23 5.3E-28 240.5 26.8 271 340-645 91-373 (454)
37 2id5_A Lingo-1, leucine rich r 99.9 1.6E-23 5.5E-28 243.1 26.4 306 342-660 13-331 (477)
38 3oja_B Anopheles plasmodium-re 99.9 1.8E-23 6.2E-28 249.2 26.7 290 301-618 64-358 (597)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-23 1.1E-27 238.1 26.2 202 307-530 37-240 (457)
40 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-23 1.4E-27 237.2 24.4 288 307-638 59-349 (457)
41 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-22 5.4E-27 243.1 28.2 136 287-429 53-194 (635)
42 1jl5_A Outer protein YOPM; leu 99.9 6.6E-23 2.2E-27 235.3 23.1 329 287-659 12-367 (454)
43 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-22 1.5E-26 219.3 24.1 183 341-530 34-224 (332)
44 1xku_A Decorin; proteoglycan, 99.9 1.2E-21 4.3E-26 215.5 26.7 257 341-639 32-304 (330)
45 1z6t_A APAF-1, apoptotic prote 99.9 1.6E-23 5.5E-28 249.6 10.9 208 35-254 219-448 (591)
46 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-22 3.7E-27 222.1 14.5 245 363-642 51-305 (313)
47 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-21 7.9E-26 229.3 26.9 261 341-645 41-301 (622)
48 1xku_A Decorin; proteoglycan, 99.9 2.5E-21 8.4E-26 213.2 25.4 234 311-564 30-272 (330)
49 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-21 1.5E-25 211.4 24.7 234 312-565 33-274 (332)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-21 4.4E-26 213.6 17.4 248 385-666 50-308 (313)
51 4fcg_A Uncharacterized protein 99.9 2E-21 6.7E-26 213.5 18.8 226 363-637 82-310 (328)
52 2z80_A TOLL-like receptor 2, v 99.9 1.1E-21 3.8E-26 218.1 15.4 270 340-639 31-312 (353)
53 4fcg_A Uncharacterized protein 99.9 2.7E-21 9.2E-26 212.4 17.7 223 340-620 81-316 (328)
54 3g06_A SSPH2 (leucine-rich rep 99.8 4.9E-20 1.7E-24 218.0 25.9 265 313-626 41-306 (622)
55 3o53_A Protein LRIM1, AGAP0063 99.8 9.5E-22 3.3E-26 215.1 8.3 259 363-664 11-277 (317)
56 4g8a_A TOLL-like receptor 4; l 99.8 5.4E-20 1.9E-24 221.0 24.2 346 312-665 52-557 (635)
57 2z66_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 195.8 21.0 238 343-638 10-258 (306)
58 3zyi_A Leucine-rich repeat-con 99.8 4.5E-19 1.5E-23 204.0 24.0 167 341-510 55-229 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 202.5 23.5 241 342-639 45-290 (440)
60 3zyj_A Leucine-rich repeat-con 99.8 5.8E-19 2E-23 202.3 23.1 223 339-618 63-292 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 203.2 23.0 240 363-639 55-301 (452)
62 2z66_A Variable lymphocyte rec 99.8 7.8E-20 2.7E-24 198.8 14.7 224 339-618 27-261 (306)
63 1ozn_A Reticulon 4 receptor; N 99.8 5.2E-19 1.8E-23 190.2 18.3 220 343-618 14-238 (285)
64 1z7x_W Ribonuclease inhibitor; 99.8 1E-21 3.4E-26 226.8 -3.5 221 308-530 24-291 (461)
65 1z7x_W Ribonuclease inhibitor; 99.8 1.6E-21 5.6E-26 225.0 -2.0 340 312-660 3-409 (461)
66 1ozn_A Reticulon 4 receptor; N 99.8 2E-19 6.8E-24 193.5 14.3 170 339-530 31-208 (285)
67 3oja_A Leucine-rich immune mol 99.8 7.1E-20 2.4E-24 212.1 10.9 231 386-636 35-270 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.8 4.6E-20 1.6E-24 201.7 6.2 235 386-662 11-250 (317)
69 2z80_A TOLL-like receptor 2, v 99.8 4.9E-19 1.7E-23 196.7 14.1 261 362-660 31-312 (353)
70 1wwl_A Monocyte differentiatio 99.8 3.2E-19 1.1E-23 194.5 7.7 238 382-639 40-307 (312)
71 3oja_A Leucine-rich immune mol 99.8 1.6E-18 5.3E-23 200.8 12.4 222 406-646 32-256 (487)
72 2z62_A TOLL-like receptor 4, v 99.7 2E-17 7E-22 176.8 18.3 145 344-511 11-161 (276)
73 1wwl_A Monocyte differentiatio 99.7 3.4E-19 1.2E-23 194.3 3.8 238 340-619 43-310 (312)
74 3ogk_B Coronatine-insensitive 99.7 8.4E-19 2.9E-23 209.1 1.1 320 310-639 162-524 (592)
75 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.6E-21 176.6 18.4 231 343-614 12-255 (350)
76 1p9a_G Platelet glycoprotein I 99.7 4.2E-16 1.4E-20 167.7 21.0 200 381-639 6-206 (290)
77 2ast_B S-phase kinase-associat 99.7 1.7E-17 5.9E-22 182.7 7.7 223 364-615 49-282 (336)
78 3ogk_B Coronatine-insensitive 99.7 2.4E-18 8.1E-23 205.1 -1.1 191 339-530 111-325 (592)
79 2o6q_A Variable lymphocyte rec 99.7 1.4E-15 4.8E-20 161.9 20.0 123 340-464 16-142 (270)
80 1h6u_A Internalin H; cell adhe 99.7 4.9E-16 1.7E-20 168.8 15.3 65 578-645 169-233 (308)
81 2ast_B S-phase kinase-associat 99.7 8.2E-18 2.8E-22 185.3 0.8 197 362-592 70-282 (336)
82 2xwt_C Thyrotropin receptor; s 99.7 6.5E-16 2.2E-20 161.3 15.2 58 582-641 179-239 (239)
83 2p1m_B Transport inhibitor res 99.7 2.2E-18 7.5E-23 205.5 -4.1 366 309-689 102-518 (594)
84 2o6q_A Variable lymphocyte rec 99.7 3.7E-15 1.3E-19 158.6 20.5 76 363-441 17-94 (270)
85 2z62_A TOLL-like receptor 4, v 99.6 9.5E-16 3.2E-20 163.8 15.6 190 340-530 28-231 (276)
86 4glp_A Monocyte differentiatio 99.6 7.5E-16 2.6E-20 167.6 14.8 217 363-639 65-305 (310)
87 2ca6_A RAN GTPase-activating p 99.6 1.8E-17 6.3E-22 186.3 1.1 248 368-640 15-315 (386)
88 1p9a_G Platelet glycoprotein I 99.6 4.5E-15 1.5E-19 159.6 19.1 191 339-564 9-204 (290)
89 2xwt_C Thyrotropin receptor; s 99.6 1E-15 3.5E-20 159.9 13.5 176 352-530 23-212 (239)
90 2p1m_B Transport inhibitor res 99.6 1.4E-17 4.9E-22 198.4 -2.5 337 310-661 128-518 (594)
91 1h6u_A Internalin H; cell adhe 99.6 4.1E-15 1.4E-19 161.5 17.1 182 340-530 41-224 (308)
92 4ay9_X Follicle-stimulating ho 99.6 6E-15 2E-19 163.4 16.9 232 365-657 12-254 (350)
93 2ca6_A RAN GTPase-activating p 99.6 2.9E-17 1E-21 184.7 -2.7 250 351-621 20-319 (386)
94 3rfs_A Internalin B, repeat mo 99.6 2.2E-15 7.6E-20 160.6 11.7 200 340-556 41-247 (272)
95 3rfs_A Internalin B, repeat mo 99.6 7E-15 2.4E-19 156.7 15.6 223 342-606 21-247 (272)
96 3goz_A Leucine-rich repeat-con 99.6 3.1E-16 1.1E-20 174.6 0.4 58 582-639 225-295 (362)
97 3m19_A Variable lymphocyte rec 99.6 5.2E-14 1.8E-18 148.0 17.3 123 341-465 15-141 (251)
98 3cvr_A Invasion plasmid antige 99.5 2.4E-14 8.3E-19 167.2 15.2 189 313-524 60-255 (571)
99 3cvr_A Invasion plasmid antige 99.5 5.9E-14 2E-18 163.9 17.7 171 341-530 60-237 (571)
100 3m19_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 144.3 18.8 170 457-639 16-190 (251)
101 4glp_A Monocyte differentiatio 99.5 1.2E-14 4.1E-19 158.1 9.7 151 496-659 142-304 (310)
102 3goz_A Leucine-rich repeat-con 99.5 1.6E-15 5.6E-20 168.8 1.2 253 345-618 3-297 (362)
103 1h6t_A Internalin B; cell adhe 99.5 3.7E-14 1.3E-18 152.6 10.6 56 340-396 46-101 (291)
104 1h6t_A Internalin B; cell adhe 99.5 2.5E-13 8.6E-18 146.0 15.6 134 486-639 78-211 (291)
105 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.8E-18 139.7 11.7 149 339-510 43-192 (197)
106 1m9s_A Internalin B; cell inva 99.5 5.2E-14 1.8E-18 166.2 9.2 76 340-417 43-118 (605)
107 1dce_A Protein (RAB geranylger 99.5 2.7E-15 9.1E-20 176.2 -2.9 201 405-635 346-567 (567)
108 1m9s_A Internalin B; cell inva 99.4 2.6E-13 9E-18 160.2 13.1 144 309-464 40-184 (605)
109 4ezg_A Putative uncharacterize 99.4 5.3E-13 1.8E-17 134.7 13.4 146 477-639 45-192 (197)
110 2o6s_A Variable lymphocyte rec 99.4 1.1E-12 3.6E-17 133.6 13.3 156 339-499 27-189 (208)
111 1dce_A Protein (RAB geranylger 99.4 2.4E-15 8.3E-20 176.5 -7.5 214 361-612 348-567 (567)
112 2o6s_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 132.9 13.3 146 343-511 10-160 (208)
113 3e6j_A Variable lymphocyte rec 99.4 3E-12 1E-16 132.4 15.7 148 478-639 21-170 (229)
114 1xeu_A Internalin C; cellular 99.4 1.4E-12 4.8E-17 138.0 11.4 78 555-639 106-183 (263)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 4.9E-12 1.7E-16 129.9 14.6 146 343-511 14-165 (220)
116 2v9t_B SLIT homolog 2 protein 99.4 5.6E-12 1.9E-16 129.5 14.4 144 343-510 14-163 (220)
117 2v9t_B SLIT homolog 2 protein 99.4 8.6E-12 3E-16 128.1 15.7 145 459-639 15-163 (220)
118 2xot_A Amphoterin-induced prot 99.3 7.5E-12 2.6E-16 139.0 15.4 167 459-638 22-199 (361)
119 2xot_A Amphoterin-induced prot 99.3 4E-12 1.4E-16 141.2 13.2 146 343-511 21-175 (361)
120 3e6j_A Variable lymphocyte rec 99.3 1E-11 3.4E-16 128.4 15.3 148 342-512 21-172 (229)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 1E-11 3.5E-16 127.5 15.2 146 458-639 14-164 (220)
122 1xeu_A Internalin C; cellular 99.3 1.5E-12 5.1E-17 137.8 8.7 48 480-530 132-179 (263)
123 4b8c_D Glucose-repressible alc 99.2 3.4E-12 1.2E-16 154.5 4.5 156 345-509 206-369 (727)
124 1w8a_A SLIT protein; signaling 99.2 8E-11 2.7E-15 118.0 12.6 125 343-468 11-139 (192)
125 2ell_A Acidic leucine-rich nuc 99.2 2.8E-11 9.7E-16 118.4 9.0 80 362-442 24-105 (168)
126 2ell_A Acidic leucine-rich nuc 99.2 4.5E-11 1.5E-15 117.0 9.5 130 477-645 25-163 (168)
127 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.4E-15 116.6 12.7 123 343-467 13-138 (193)
128 4b8c_D Glucose-repressible alc 99.2 2.5E-11 8.6E-16 146.9 7.7 133 364-519 203-336 (727)
129 2je0_A Acidic leucine-rich nuc 99.1 6.1E-11 2.1E-15 113.5 7.7 124 476-637 17-149 (149)
130 2je0_A Acidic leucine-rich nuc 99.1 7E-11 2.4E-15 113.1 7.8 78 363-441 18-97 (149)
131 1a9n_A U2A', U2A'; complex (nu 99.1 1.3E-10 4.6E-15 114.6 7.4 124 339-465 18-150 (176)
132 1w8a_A SLIT protein; signaling 99.1 7.2E-10 2.4E-14 111.0 12.1 126 365-514 11-141 (192)
133 2wfh_A SLIT homolog 2 protein 99.0 1.7E-09 5.9E-14 108.3 13.7 62 578-639 74-137 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.0 5.7E-10 2E-14 110.0 9.3 60 579-638 85-150 (176)
135 2o6r_A Variable lymphocyte rec 99.0 1.4E-09 4.8E-14 107.3 12.1 126 342-469 9-138 (177)
136 3sb4_A Hypothetical leucine ri 99.0 2.8E-09 9.6E-14 116.5 13.8 252 339-634 48-327 (329)
137 3sb4_A Hypothetical leucine ri 99.0 1.8E-09 6.2E-14 118.1 12.0 255 311-612 48-328 (329)
138 2o6r_A Variable lymphocyte rec 98.9 6.4E-09 2.2E-13 102.5 13.2 124 479-639 10-135 (177)
139 1ds9_A Outer arm dynein; leuci 98.9 3.4E-11 1.2E-15 121.4 -4.8 117 373-513 36-154 (198)
140 1ds9_A Outer arm dynein; leuci 98.9 5.3E-11 1.8E-15 120.0 -3.9 132 487-634 36-180 (198)
141 3g39_A Variable lymphocyte rec 98.9 7.2E-09 2.5E-13 101.4 10.1 101 342-443 11-113 (170)
142 2r9u_A Variable lymphocyte rec 98.8 9.8E-09 3.4E-13 100.8 10.2 99 343-443 15-116 (174)
143 2r9u_A Variable lymphocyte rec 98.7 4.1E-08 1.4E-12 96.4 10.4 97 538-639 18-116 (174)
144 4fdw_A Leucine rich hypothetic 98.7 5.6E-07 1.9E-11 100.7 20.9 231 363-637 136-379 (401)
145 3g39_A Variable lymphocyte rec 98.7 6E-08 2.1E-12 94.8 10.5 98 537-639 14-113 (170)
146 4fdw_A Leucine rich hypothetic 98.6 1.6E-06 5.4E-11 97.0 21.8 195 304-530 128-330 (401)
147 4fs7_A Uncharacterized protein 98.6 3.6E-06 1.2E-10 94.2 23.5 97 578-691 293-391 (394)
148 2ifg_A High affinity nerve gro 98.3 7.2E-07 2.5E-11 98.0 8.9 73 345-418 13-90 (347)
149 2ifg_A High affinity nerve gro 98.3 8.1E-07 2.8E-11 97.6 9.3 61 578-638 52-113 (347)
150 4fs7_A Uncharacterized protein 98.3 3.3E-05 1.1E-09 86.3 21.9 321 300-665 59-393 (394)
151 3un9_A NLR family member X1; l 98.2 4E-08 1.4E-12 108.9 -4.2 71 548-618 204-283 (372)
152 3un9_A NLR family member X1; l 98.2 9.6E-08 3.3E-12 105.8 -1.2 59 581-639 182-250 (372)
153 1w5s_A Origin recognition comp 98.1 7.1E-06 2.4E-10 92.2 11.1 217 12-237 98-371 (412)
154 2ra8_A Uncharacterized protein 98.1 9.6E-07 3.3E-11 97.0 3.0 60 580-639 250-318 (362)
155 2ra8_A Uncharacterized protein 98.0 2.4E-06 8.2E-11 93.8 4.8 130 379-510 166-318 (362)
156 2qen_A Walker-type ATPase; unk 98.0 2.4E-05 8.4E-10 85.5 12.7 202 39-250 116-347 (350)
157 4gt6_A Cell surface protein; l 98.0 0.0011 3.8E-08 73.8 25.7 129 301-440 52-190 (394)
158 2fna_A Conserved hypothetical 98.0 7.6E-06 2.6E-10 89.9 7.6 189 50-250 137-355 (357)
159 4h09_A Hypothetical leucine ri 97.9 0.0016 5.6E-08 71.9 24.4 125 495-636 213-341 (379)
160 4gt6_A Cell surface protein; l 97.8 0.002 7E-08 71.6 23.7 272 363-667 65-364 (394)
161 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4.1E-10 77.7 2.1 94 354-447 52-154 (176)
162 3e4g_A ATP synthase subunit S, 97.6 1.5E-05 5.1E-10 77.1 2.3 95 376-470 52-154 (176)
163 4h09_A Hypothetical leucine ri 97.6 0.005 1.7E-07 67.9 21.7 147 496-667 191-340 (379)
164 2qby_B CDC6 homolog 3, cell di 97.5 0.0013 4.5E-08 72.8 16.9 214 13-237 95-339 (384)
165 2v1u_A Cell division control p 97.5 0.0025 8.4E-08 70.4 17.7 246 13-285 91-383 (387)
166 1njg_A DNA polymerase III subu 97.1 0.0015 5.1E-08 66.7 10.0 104 48-153 124-231 (250)
167 1io0_A Tropomodulin; LRR prote 97.1 0.00013 4.3E-09 72.0 1.2 58 581-638 92-161 (185)
168 3rw6_A Nuclear RNA export fact 97.0 0.00039 1.3E-08 72.3 3.9 60 361-421 169-233 (267)
169 3rw6_A Nuclear RNA export fact 96.9 0.00077 2.6E-08 70.1 5.7 64 581-645 169-237 (267)
170 1io0_A Tropomodulin; LRR prote 96.9 0.00017 6E-09 71.0 0.1 120 495-618 32-164 (185)
171 2qby_A CDC6 homolog 1, cell di 96.8 0.0031 1E-07 69.6 10.2 188 40-237 116-348 (386)
172 1fnn_A CDC6P, cell division co 96.1 0.033 1.1E-06 61.3 12.5 236 13-258 86-387 (389)
173 2chg_A Replication factor C sm 95.5 0.028 9.5E-07 56.2 8.2 101 49-151 101-205 (226)
174 1sxj_B Activator 1 37 kDa subu 95.0 0.026 8.8E-07 60.4 6.4 102 48-151 105-211 (323)
175 3rfe_A Platelet glycoprotein I 93.7 0.1 3.5E-06 47.6 6.3 53 344-397 12-67 (130)
176 3rfe_A Platelet glycoprotein I 93.1 0.14 4.9E-06 46.6 6.3 52 586-639 12-66 (130)
177 1hqc_A RUVB; extended AAA-ATPa 92.5 1.4 4.8E-05 46.7 14.3 188 41-245 78-306 (324)
178 1iqp_A RFCS; clamp loader, ext 92.4 0.25 8.7E-06 52.5 8.2 103 49-153 109-215 (327)
179 1pgv_A TMD-1, tropomodulin TMD 87.7 0.26 8.9E-06 48.2 2.9 59 580-638 68-136 (197)
180 1jr3_A DNA polymerase III subu 87.0 1.6 5.4E-05 47.2 9.2 100 49-150 118-221 (373)
181 1d2n_A N-ethylmaleimide-sensit 86.8 2.9 9.9E-05 43.0 10.6 119 47-172 121-265 (272)
182 1pgv_A TMD-1, tropomodulin TMD 85.3 0.31 1E-05 47.7 1.9 57 581-637 97-166 (197)
183 2chq_A Replication factor C sm 84.8 5.2 0.00018 41.9 11.7 99 49-149 101-203 (319)
184 2z4s_A Chromosomal replication 84.2 1.4 4.7E-05 49.3 6.9 123 43-168 187-332 (440)
185 3bos_A Putative DNA replicatio 83.1 0.9 3.1E-05 45.6 4.4 98 50-149 104-216 (242)
186 1a5t_A Delta prime, HOLB; zinc 79.8 4.7 0.00016 42.9 8.9 95 49-150 107-205 (334)
187 1sxj_A Activator 1 95 kDa subu 78.7 6.4 0.00022 44.8 10.1 119 49-172 147-278 (516)
188 3h4m_A Proteasome-activating n 78.5 4.5 0.00016 41.7 8.1 117 48-168 108-258 (285)
189 1sxj_E Activator 1 40 kDa subu 72.4 7.9 0.00027 41.3 8.2 99 50-149 134-236 (354)
190 3pfi_A Holliday junction ATP-d 66.3 52 0.0018 34.5 13.1 185 49-251 105-328 (338)
191 1sxj_D Activator 1 41 kDa subu 64.0 25 0.00085 37.2 10.0 100 49-150 132-235 (353)
192 2qz4_A Paraplegin; AAA+, SPG7, 63.2 35 0.0012 34.2 10.6 95 49-144 97-215 (262)
193 3te6_A Regulatory protein SIR3 62.7 15 0.0005 38.7 7.5 103 14-118 94-211 (318)
194 3u61_B DNA polymerase accessor 61.0 20 0.00067 37.6 8.4 93 50-146 105-212 (324)
195 1l8q_A Chromosomal replication 54.9 17 0.00058 38.2 6.6 89 51-143 99-201 (324)
196 3eie_A Vacuolar protein sortin 54.3 74 0.0025 33.1 11.5 92 49-142 109-219 (322)
197 3d8b_A Fidgetin-like protein 1 53.2 60 0.002 34.5 10.7 99 49-149 175-294 (357)
198 2qp9_X Vacuolar protein sortin 49.1 1.1E+02 0.0038 32.3 12.0 90 49-142 142-252 (355)
199 3syl_A Protein CBBX; photosynt 48.5 25 0.00086 36.4 6.6 68 51-120 131-219 (309)
200 1xwi_A SKD1 protein; VPS4B, AA 48.5 1.3E+02 0.0045 31.2 12.3 99 49-149 104-222 (322)
201 1jr3_D DNA polymerase III, del 44.0 58 0.002 34.3 8.7 100 47-148 73-183 (343)
202 3vfd_A Spastin; ATPase, microt 43.3 1.5E+02 0.0051 31.7 12.0 99 49-149 206-325 (389)
203 2zan_A Vacuolar protein sortin 41.8 1.9E+02 0.0063 31.7 12.7 92 49-142 226-336 (444)
204 1g5t_A COB(I)alamin adenosyltr 37.8 20 0.00069 34.6 3.3 66 39-106 108-181 (196)
205 3uk6_A RUVB-like 2; hexameric 34.2 84 0.0029 33.2 8.1 90 52-147 191-300 (368)
206 2lci_A Protein OR36; structura 31.6 73 0.0025 25.9 5.0 103 35-140 10-125 (134)
207 3pvs_A Replication-associated 27.7 1.6E+02 0.0056 32.2 9.1 98 48-147 104-212 (447)
208 3b9p_A CG5977-PA, isoform A; A 27.5 3E+02 0.01 27.7 10.8 98 48-149 111-232 (297)
209 1sxj_C Activator 1 40 kDa subu 25.9 2.1E+02 0.0073 29.7 9.4 97 49-147 109-209 (340)
210 3cf0_A Transitional endoplasmi 24.5 3.9E+02 0.013 27.1 10.9 93 48-144 106-222 (301)
211 2gno_A DNA polymerase III, gam 24.1 56 0.0019 33.9 4.2 69 49-118 81-152 (305)
212 2lkw_A Membrane fusion protein 20.5 44 0.0015 19.5 1.3 14 886-899 3-17 (26)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.5e-33 Score=327.52 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=193.2
Q ss_pred ChHHHHHHHHHHHhcCCC-CcccCCc-----cchHHHHHhhCCC-eEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEe
Q 039311 13 GLAHLRQILLSAILDDGN-VSIGCPS-----IGLNFRSKRLSRK-KVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITA 85 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~-~~~~~~~-----~~~~~i~~~L~~k-r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTT 85 (909)
++..++++|+.++..... ....+.+ .++..+++.|++| ||||||||||+.+++ .+.. .+||||||||
T Consensus 199 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTT 272 (549)
T 2a5y_B 199 STFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEc
Confidence 688999999999974322 1223333 3488999999996 999999999999976 2222 2899999999
Q ss_pred CCchhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHH
Q 039311 86 RDKQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWEST 164 (909)
Q Consensus 86 R~~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~ 164 (909)
|++.|+..++ ...+|+|++|+++|||+||.++||+... .+++.+++++|+++|+|+||||+++|+.|+.++. +|...
T Consensus 273 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~ 350 (549)
T 2a5y_B 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQ 350 (549)
T ss_dssp SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHH
T ss_pred CCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHH
Confidence 9999999886 4578999999999999999999997643 4688999999999999999999999999988753 33233
Q ss_pred HH-HHhcCCCcchhhhhhhcccCCChhhhhhhe-----------eeeeccCCCCHHHHHHHHHhc--CCCccc-------
Q 039311 165 IK-KIKRIPHVDIQKVLKVSFDGLDDEEQNLFL-----------DIASFFKGEDKDCVIKFLDGC--GFSAEI------- 223 (909)
Q Consensus 165 l~-~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl-----------~~a~f~~~~~~~~li~~w~~~--g~~~~~------- 223 (909)
+. .++.....++..+|++||++||.++|.||+ |||+||++++.+ +++|+|+ ||+...
T Consensus 351 l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 351 LNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTH
T ss_pred hHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHH
Confidence 33 344335677999999999999999999999 999999998655 8899999 885432
Q ss_pred ----chhHhhhccccEEeC----CeEEehHHHHHHHHHHhhhccc
Q 039311 224 ----GISVLVDKCLMVILN----NKIMMHDLLQEMGREIVRQESI 260 (909)
Q Consensus 224 ----~i~~L~~~~li~~~~----~~~~mhdll~e~~~~i~~~~~~ 260 (909)
++++|+++||++... .+|.|||++|++|++++.+++.
T Consensus 429 ~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 699999999999862 3699999999999999987754
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=9.7e-30 Score=305.31 Aligned_cols=320 Identities=15% Similarity=0.088 Sum_probs=213.9
Q ss_pred CCCCC-CCCccEEEeeCCCCCc------------------cCCCCC---CCCeeEEEcCCCCcc-ccccccccCCCCCEE
Q 039311 334 FRGLE-STELRYLQWHGCPLKS------------------LSSKIP---PENLVSLEMPHSSIK-QLWKGVQRLVNLKHI 390 (909)
Q Consensus 334 ~~~l~-~~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L 390 (909)
+..+. +++|++|++++|.+.. +|..+. +.+|++|++++|.+. .+|..++++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 33344 7788888888888877 777765 778888888887754 677778888888888
Q ss_pred ecCCCc-CCC-cCCC-CCcc------ccccccccccccccceecc--cccCCCcccEeccccccCccccCccccCCcCcE
Q 039311 391 NLSHSE-HLT-KIPD-LSLA------TNLESLNFQGCTCLLETHS--SIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459 (909)
Q Consensus 391 ~Ls~~~-~l~-~~p~-l~~l------~~L~~L~L~~c~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 459 (909)
++++|. +.. .+|. ++.+ ++|++|++++|... .+|. .++.+++|++|++++|.....+|....+++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCE
Confidence 888887 544 4554 5544 78888888887655 7777 788888888888887654337773235778888
Q ss_pred EEccCCCCCcccCcc---ccC-cceeeccccCccccCcccccCC--CCCEEeccCCCCCCcCccccc-------CCCCCC
Q 039311 460 LILSGCSNLMSFPEL---SCN-IEELSLDGTAIQEFPSSIERLS--SLILLNLGNCLRLEGLPSKIC-------KLKSLE 526 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~---~~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~~l~-------~L~~L~ 526 (909)
|++++|... .+|.. ..+ |+.|++++|.+..+|..++.++ +|+.|++++|...+.+|..+. .+++|+
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 888876543 56553 235 7788888888888887776654 788888888877777777676 666777
Q ss_pred eeeccc---------------ccccccccCcceeecCcccccc--------CCCCeeecCccccccccccccCccC--CC
Q 039311 527 RLNLAE---------------ALKELKAEGIAIREVPSSIACL--------KNLGRLSFESFMCHEQMGLLLPISF--GL 581 (909)
Q Consensus 527 ~L~l~~---------------~l~~L~l~~~~~~~lp~~i~~l--------~~L~~L~l~~~~~~~~~~~~~~~~~--~l 581 (909)
.|++.. +|+.|++++|.+..+|..+... ++|+.|++++|... ..+..+. .+
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~~~l 512 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT----KLSDDFRATTL 512 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC----BCCGGGSTTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC----ccChhhhhccC
Confidence 777632 3555566666666665543322 26666666653222 1222333 56
Q ss_pred CCCCEEecCCCCCCCcccccCCCCCCcEEECC------CCCCe-ecchhhccCCCCCEEeecCCCCCcccCC-CCCCcCc
Q 039311 582 TSLTYLRLTDCGIIELPECLGQLSSRSILLLE------KNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE-LPCDLSD 653 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~------~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l~~sL~~ 653 (909)
++|+.|+|++|.+..+|..+..+++|+.|+|+ +|++. .+|..+..+++|+.|+|++|.. +.+|. +.++|+.
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~ 591 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISV 591 (636)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCE
T ss_pred CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCE
Confidence 66777777777666666666667777777763 34433 5666666677777777776643 66665 4566777
Q ss_pred eecccCc
Q 039311 654 IEAHCCS 660 (909)
Q Consensus 654 L~i~~C~ 660 (909)
|++++|+
T Consensus 592 L~Ls~N~ 598 (636)
T 4eco_A 592 LDIKDNP 598 (636)
T ss_dssp EECCSCT
T ss_pred EECcCCC
Confidence 7777664
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.4e-28 Score=299.93 Aligned_cols=350 Identities=20% Similarity=0.219 Sum_probs=227.7
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCC--CCCCCccEEEeeCCCCCccCC-----CCCCCCeeEEEcCCCCcccccc
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRG--LESTELRYLQWHGCPLKSLSS-----KIPPENLVSLEMPHSSIKQLWK 379 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~--l~~~~Lr~L~l~~~~l~~lp~-----~~~~~~L~~L~L~~~~i~~lp~ 379 (909)
.+.++++|++|++++|.+... .+.. ..+++|++|++++|.+...+. ...+.+|++|++++|.+.....
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFP-----GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECC-----SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred HHhCCCCCCEEECcCCccCCc-----CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 677788888888877654221 1111 126778888888877765543 2256677777777777765433
Q ss_pred ccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcE
Q 039311 380 GVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459 (909)
Q Consensus 380 ~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 459 (909)
+..+++|++|++++|.+.+.+|.++.+++|++|++++|.....+|..++.+++|++|++++|.....+|.. .+++|++
T Consensus 196 -~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~ 273 (768)
T 3rgz_A 196 -VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQY 273 (768)
T ss_dssp -CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCE
T ss_pred -cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCE
Confidence 36778888888888877777777788888888888888777777777888888888888877644444443 6677777
Q ss_pred EEccCCCCCcccCccc----cCcceeeccccCcc-ccCcccccCCCCCEEeccCCCCCCcCccc-ccCCCCCCeeecc--
Q 039311 460 LILSGCSNLMSFPELS----CNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLA-- 531 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~----~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~~L~~L~l~-- 531 (909)
|++++|...+.+|... .+|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 7777766555555432 45666666666665 45556666666666666666555455544 5555555555551
Q ss_pred -----------------------c-----------------ccccccccCccee-ecCccccccCCCCeeecCccccccc
Q 039311 532 -----------------------E-----------------ALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 532 -----------------------~-----------------~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
. +++.|+++++.+. .+|..+..+++|+.|++++| .+
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N---~l 430 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---YL 430 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS---EE
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC---cc
Confidence 1 2444555555544 45666777777777777762 22
Q ss_pred cccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCCC-
Q 039311 571 MGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPEL- 647 (909)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l- 647 (909)
.+..+..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|..+..+++|+.|+|++|+....+|..
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 2333344566777777777777777 46777777777777777777777 66777777777777777777655566642
Q ss_pred --CCCcCceecccCccccccc
Q 039311 648 --PCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 648 --~~sL~~L~i~~C~~L~~l~ 666 (909)
.++|+.|++++|.-...+|
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECC
T ss_pred hcCCCCCEEECCCCcccCcCC
Confidence 4467777777775444444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.3e-29 Score=303.47 Aligned_cols=331 Identities=15% Similarity=0.093 Sum_probs=208.5
Q ss_pred CCCccEEEeeCCCCCc------------------cCCCC---CCCCeeEEEcCCCCc-cccccccccCCCCCEEecCCCc
Q 039311 339 STELRYLQWHGCPLKS------------------LSSKI---PPENLVSLEMPHSSI-KQLWKGVQRLVNLKHINLSHSE 396 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~i-~~lp~~~~~L~~L~~L~Ls~~~ 396 (909)
+++|++|++++|.+.. +|..+ .+.+|++|+|++|.+ ..+|..++++++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 6777777777777776 77766 467777777777763 4667777777777777777776
Q ss_pred -CCC-cCCC-CCcc-------ccccccccccccccceecc--cccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 397 -HLT-KIPD-LSLA-------TNLESLNFQGCTCLLETHS--SIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 397 -~l~-~~p~-l~~l-------~~L~~L~L~~c~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+.. .+|. ++.+ ++|++|++++|... .+|. .++.+++|++|++++|. +..+|...++++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcC
Confidence 443 4553 3333 47777777777655 7777 77777777777777755 44777333577777777777
Q ss_pred CCCCcccCccc---cC-cceeeccccCccccCcccccCCC--CCEEeccCCCCCCcCccc---cc--CCCCCCeeecccc
Q 039311 465 CSNLMSFPELS---CN-IEELSLDGTAIQEFPSSIERLSS--LILLNLGNCLRLEGLPSK---IC--KLKSLERLNLAEA 533 (909)
Q Consensus 465 c~~l~~lp~~~---~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~c~~l~~lp~~---l~--~L~~L~~L~l~~~ 533 (909)
|... .+|..+ .+ |+.|++++|.+..+|..+..++. |+.|++++|...+.+|.. ++ .+++|+.|
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L----- 678 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV----- 678 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE-----
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE-----
Confidence 6644 666432 34 77777777777777777766544 777777777665544432 22 22244444
Q ss_pred cccccccCcceeecCcccc-ccCCCCeeecCccccccccccccCc----cCCCCCCCEEecCCCCCCCcccccC--CCCC
Q 039311 534 LKELKAEGIAIREVPSSIA-CLKNLGRLSFESFMCHEQMGLLLPI----SFGLTSLTYLRLTDCGIIELPECLG--QLSS 606 (909)
Q Consensus 534 l~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~----~~~l~~L~~L~Ls~~~l~~lp~~l~--~l~~ 606 (909)
++++|.+..+|..+. .+++|+.|++++|....+....... +.++++|+.|+|++|.+..+|..+. .+++
T Consensus 679 ----~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 679 ----TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754 (876)
T ss_dssp ----ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred ----EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence 446666666766554 6677777777764332111111100 1122367777777777777777765 7777
Q ss_pred CcEEECCCCCCeecchhhccCCCCCEEeecC------CCCCcccCCC---CCCcCceecccCcccccccCcchhccccCC
Q 039311 607 RSILLLEKNNFERIPESIIQLSHLFSLGISH------CERLHSLPEL---PCDLSDIEAHCCSSLEALSGLSILFTQTSW 677 (909)
Q Consensus 607 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~~~~l~~~~~~ 677 (909)
|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|.- +.+|... ..
T Consensus 755 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l------~~ 827 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL------TP 827 (876)
T ss_dssp CCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC------CS
T ss_pred cCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh------cC
Confidence 7777777777777777777777777777765 3334455542 34667777777643 5555531 12
Q ss_pred CcceeEecccC
Q 039311 678 NSQFFYFVNCF 688 (909)
Q Consensus 678 ~~~~l~~~~C~ 688 (909)
.+..+.+.+|+
T Consensus 828 ~L~~LdLs~N~ 838 (876)
T 4ecn_A 828 QLYILDIADNP 838 (876)
T ss_dssp SSCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 44555666554
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.1e-28 Score=296.17 Aligned_cols=331 Identities=15% Similarity=0.148 Sum_probs=273.1
Q ss_pred CCCCCccCCCC-CCCCeeEEEcCCCCccc------------------cccccc--cCCCCCEEecCCCcCCCcCCC-CCc
Q 039311 349 GCPLKSLSSKI-PPENLVSLEMPHSSIKQ------------------LWKGVQ--RLVNLKHINLSHSEHLTKIPD-LSL 406 (909)
Q Consensus 349 ~~~l~~lp~~~-~~~~L~~L~L~~~~i~~------------------lp~~~~--~L~~L~~L~Ls~~~~l~~~p~-l~~ 406 (909)
+|.++.+|..+ .+.+|++|+|++|.+.. +|..++ ++++|++|++++|.+.+.+|. +++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34566688877 88999999999999998 999999 999999999999999999886 999
Q ss_pred ccccccccccccc-ccc-eecccccCC------CcccEeccccccCccccCc--cc-cCCcCcEEEccCCCCCcccCcc-
Q 039311 407 ATNLESLNFQGCT-CLL-ETHSSIQYL------NKLVVLNLKHCRSLTSLST--SI-HLGSLKKLILSGCSNLMSFPEL- 474 (909)
Q Consensus 407 l~~L~~L~L~~c~-~l~-~~p~~i~~L------~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~- 474 (909)
+++|++|++++|. ... .+|..++.+ ++|++|++++|. ++.+|. .+ ++++|+.|++++|...+.+|..
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchhhhC
Confidence 9999999999998 655 789988887 999999999975 558888 55 6999999999998877788832
Q ss_pred -ccCcceeeccccCccccCcccccCCC-CCEEeccCCCCCCcCcccccCCC--CCCeeeccc------------------
Q 039311 475 -SCNIEELSLDGTAIQEFPSSIERLSS-LILLNLGNCLRLEGLPSKICKLK--SLERLNLAE------------------ 532 (909)
Q Consensus 475 -~~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~l~~L~--~L~~L~l~~------------------ 532 (909)
..+|+.|++++|.+..+|.+++.+++ |+.|++++|... .+|..++.++ +|+.|++..
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 35789999999999999999999999 999999999765 8998887655 899998832
Q ss_pred ----ccccccccCcceeecCcccc-ccCCCCeeecCccccccccccccCc----cCCCCCCCEEecCCCCCCCcccccC-
Q 039311 533 ----ALKELKAEGIAIREVPSSIA-CLKNLGRLSFESFMCHEQMGLLLPI----SFGLTSLTYLRLTDCGIIELPECLG- 602 (909)
Q Consensus 533 ----~l~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~----~~~l~~L~~L~Ls~~~l~~lp~~l~- 602 (909)
+++.|++++|.+..+|..+. .+++|+.|++++|....+....... +..+++|+.|+|++|.+..+|..+.
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 57788999999999998755 5899999999985443221111110 1123399999999999999999997
Q ss_pred -CCCCCcEEECCCCCCeecchhhccCCCCCEEeecC------CCCCcccCCC---CCCcCceecccCcccccccCcchhc
Q 039311 603 -QLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH------CERLHSLPEL---PCDLSDIEAHCCSSLEALSGLSILF 672 (909)
Q Consensus 603 -~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~~~~l~ 672 (909)
.+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|.- +.+|...
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~--- 585 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--- 585 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH---
Confidence 99999999999999999999999999999999965 4455677753 46899999999865 7777632
Q ss_pred cccCCCcceeEecccC
Q 039311 673 TQTSWNSQFFYFVNCF 688 (909)
Q Consensus 673 ~~~~~~~~~l~~~~C~ 688 (909)
...+..+.+.+++
T Consensus 586 ---~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 586 ---TPNISVLDIKDNP 598 (636)
T ss_dssp ---CTTCCEEECCSCT
T ss_pred ---hCcCCEEECcCCC
Confidence 1456677777664
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.7e-28 Score=297.35 Aligned_cols=350 Identities=19% Similarity=0.196 Sum_probs=248.2
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCcc-ccccccccCC
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIK-QLWKGVQRLV 385 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~-~lp~~~~~L~ 385 (909)
+.++++|+.|++.+|.+.+... ...+.+|++|++++|.+...++.+ .+.+|++|++++|.+. .+|..+..++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 247 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS
T ss_pred hccCCCCCEEECCCCcccccCC------cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC
Confidence 5677777777777664332111 122677888888888776643334 6778888888888776 5567777788
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCC-CcccEeccccccCccccCccc-cCCcCcEEEcc
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYL-NKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILS 463 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L-~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls 463 (909)
+|++|++++|.+.+.+|.. .+++|++|++++|...+.+|..+..+ ++|++|++++|.....+|..+ ++++|++|+++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 8888888887766666655 66777777777776666667666654 777777777765444555555 46777777777
Q ss_pred CCCCCcccCcc----ccCcceeeccccCcc-ccCcccccCC-CCCEEeccCCCCCCcCcccccC--CCCCCeeecc----
Q 039311 464 GCSNLMSFPEL----SCNIEELSLDGTAIQ-EFPSSIERLS-SLILLNLGNCLRLEGLPSKICK--LKSLERLNLA---- 531 (909)
Q Consensus 464 ~c~~l~~lp~~----~~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~l~~--L~~L~~L~l~---- 531 (909)
+|...+.+|.. ..+|++|++++|.+. .+|.++..++ +|+.|++++|...+.+|..+.. +++|+.|++.
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 76655555532 345667777776666 6666666665 6666666666555555555544 5566666552
Q ss_pred -----------cccccccccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC-Ccc
Q 039311 532 -----------EALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELP 598 (909)
Q Consensus 532 -----------~~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp 598 (909)
.+|+.|++++|.+. .+|..++.+++|+.|++++| .+.+..+..+..+++|+.|++++|.+. .+|
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN---MLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS---CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC---cccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 23555666777776 67888999999999999983 333344455778999999999999998 588
Q ss_pred cccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccC
Q 039311 599 ECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 599 ~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~ 667 (909)
..++.+++|+.|+|++|+++ .+|.++..+++|+.|+|++|+....+|. -.++|+.|++.+|+--..+|.
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 89999999999999999998 8899999999999999999977768885 345788999998876656654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.8e-27 Score=283.33 Aligned_cols=343 Identities=17% Similarity=0.160 Sum_probs=217.7
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC-CCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI-PPEN 363 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~-~~~~ 363 (909)
.++.+.+..+.+. .+.+.+|.++++|++|++++|.+.. ..+..+. +.+|++|++++|.+..++ ..+ .+.+
T Consensus 34 ~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCcEEEccCCccC--cCChhHhccCccceEEECCCCccce-----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 4555555555444 4457789999999999999886532 2234455 889999999999998874 455 7899
Q ss_pred eeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCC-cCCCCCccccccccccccccccceecccccCCCccc--Eecc
Q 039311 364 LVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLT-KIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLV--VLNL 439 (909)
Q Consensus 364 L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~-~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~--~L~L 439 (909)
|++|++++|.+..+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......+..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999999999988 5778999999999999998776 346677799999999999887766677888999999 8899
Q ss_pred ccccCccccCccccCCcCcEEEcc----------------------------------------------------CCCC
Q 039311 440 KHCRSLTSLSTSIHLGSLKKLILS----------------------------------------------------GCSN 467 (909)
Q Consensus 440 ~~c~~l~~lp~~~~l~~L~~L~Ls----------------------------------------------------~c~~ 467 (909)
++|......|..+...+|+.|+++ +|..
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 887644444443344444444444 4322
Q ss_pred CcccCc---cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccc-----------
Q 039311 468 LMSFPE---LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA----------- 533 (909)
Q Consensus 468 l~~lp~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~----------- 533 (909)
....+. ...+|++|++++|.++.+|..++.+++|++|++++|......|..++.+++|+.|++..+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 221111 234567777777777777777777777777777777655555666677777777766322
Q ss_pred -----cccccccCcceeec---CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc--ccccCC
Q 039311 534 -----LKELKAEGIAIREV---PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL--PECLGQ 603 (909)
Q Consensus 534 -----l~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~ 603 (909)
|+.|+++++.+..+ +..+..+++|+.|++++|. +.+.....+..+++|+.|++++|.+... +..+..
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS---CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc---CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 33344444444333 3344455555555554421 1111222234445555555555544432 122445
Q ss_pred CCCCcEEECCCCCCee-cchhhccCCCCCEEeecCCC
Q 039311 604 LSSRSILLLEKNNFER-IPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 604 l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~ 639 (909)
+++|+.|++++|.+.. .|..+..+++|+.|++++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555555555555542 23344455555555555543
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.8e-27 Score=290.69 Aligned_cols=338 Identities=14% Similarity=0.137 Sum_probs=273.0
Q ss_pred cccccCCCCCcEEEEecCCCCcC---ccee---------ecCCCCC---CCCccEEEeeCCC-CCccCCCC-CCCCeeEE
Q 039311 305 AGSFTNMHKLRFFKFYSSHYGEN---VNKV---------HNFRGLE---STELRYLQWHGCP-LKSLSSKI-PPENLVSL 367 (909)
Q Consensus 305 ~~~f~~~~~Lr~L~l~~~~~~~~---~~~~---------~~~~~l~---~~~Lr~L~l~~~~-l~~lp~~~-~~~~L~~L 367 (909)
+..|.++++|+.|++++|.+.+. .... .++..+. +++|++|++++|. ...+|..+ .+.+|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 45799999999999999987651 0000 1444543 7899999999997 56778777 88999999
Q ss_pred EcCCCC-ccc--cccccccCC-------CCCEEecCCCcCCCcCCC---CCccccccccccccccccceecccccCCCcc
Q 039311 368 EMPHSS-IKQ--LWKGVQRLV-------NLKHINLSHSEHLTKIPD---LSLATNLESLNFQGCTCLLETHSSIQYLNKL 434 (909)
Q Consensus 368 ~L~~~~-i~~--lp~~~~~L~-------~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L 434 (909)
++++|. +.. +|..++.+. +|++|+|++|.+. .+|. ++.+++|++|++++|... .+| .++.+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 999998 874 887777665 9999999999977 7776 899999999999998866 888 99999999
Q ss_pred cEeccccccCccccCccc-cCCc-CcEEEccCCCCCcccCcccc-----CcceeeccccCccccC----cccc--cCCCC
Q 039311 435 VVLNLKHCRSLTSLSTSI-HLGS-LKKLILSGCSNLMSFPELSC-----NIEELSLDGTAIQEFP----SSIE--RLSSL 501 (909)
Q Consensus 435 ~~L~L~~c~~l~~lp~~~-~l~~-L~~L~Ls~c~~l~~lp~~~~-----~L~~L~L~~~~i~~lp----~~i~--~l~~L 501 (909)
+.|++++|. +..+|..+ ++++ |+.|++++|... .+|..+. +|+.|++++|.+...+ ..++ .+++|
T Consensus 598 ~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999976 55888766 5888 999999998754 7886543 3889999999997543 3333 45589
Q ss_pred CEEeccCCCCCCcCcccc-cCCCCCCeeecccccccccccCcceeecCccccc--------cCCCCeeecCccccccccc
Q 039311 502 ILLNLGNCLRLEGLPSKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSIAC--------LKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 502 ~~L~L~~c~~l~~lp~~l-~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~--------l~~L~~L~l~~~~~~~~~~ 572 (909)
+.|+|++|... .+|..+ ..+++|+.|++. +|.+..+|..+.. +++|+.|++++|...
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls---------~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---- 741 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILS---------NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---- 741 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECC---------SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC----
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECC---------CCcCCccChHHhccccccccccCCccEEECCCCCCc----
Confidence 99999999665 778765 488999999884 4556677765443 349999999984333
Q ss_pred cccCccC--CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCC------CCCe-ecchhhccCCCCCEEeecCCCCCcc
Q 039311 573 LLLPISF--GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEK------NNFE-RIPESIIQLSHLFSLGISHCERLHS 643 (909)
Q Consensus 573 ~~~~~~~--~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ 643 (909)
..+..+. .+++|+.|+|++|.+..+|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|.. ..
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence 2333454 79999999999999999999999999999999977 5555 8899999999999999999865 99
Q ss_pred cCC-CCCCcCceecccCccc
Q 039311 644 LPE-LPCDLSDIEAHCCSSL 662 (909)
Q Consensus 644 lp~-l~~sL~~L~i~~C~~L 662 (909)
+|. ++++|+.|++++|+-.
T Consensus 821 Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 821 VDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CCSCCCSSSCEEECCSCTTC
T ss_pred cCHhhcCCCCEEECCCCCCC
Confidence 997 6789999999999743
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=8e-27 Score=279.38 Aligned_cols=359 Identities=19% Similarity=0.220 Sum_probs=217.2
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~~ 362 (909)
..++.+.+..+.+ ..+...+|.++++|++|++++|.+... .+..+. +++|++|++++|.+..+ |..+ .+.
T Consensus 32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETI-----EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCccccc-----CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 4455555544444 344566889999999999998765322 223344 78899999999999888 5566 788
Q ss_pred CeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCC-cCCC-CCccccccccccccccccceecccccCCCccc----
Q 039311 363 NLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLT-KIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLV---- 435 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~---- 435 (909)
+|++|++++|.+..++ ..++++++|++|++++|.+.. .+|. ++++++|++|++++|......+..++.+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 9999999999998887 678899999999999998765 4565 88999999999999877666666677666655
Q ss_pred EeccccccCccccCccc-cCCcCcEEEccCCCCCc---------------------------------------------
Q 039311 436 VLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLM--------------------------------------------- 469 (909)
Q Consensus 436 ~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~--------------------------------------------- 469 (909)
+|++++|. ++.++... ...+|+.|++++|...+
T Consensus 185 ~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 185 SLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeeccCCC-cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 67777754 44444433 34467777776654310
Q ss_pred -------------ccC--ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccc-
Q 039311 470 -------------SFP--ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA- 533 (909)
Q Consensus 470 -------------~lp--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~- 533 (909)
.+| ....+|+.|+++++.+..+| ++..+++|+.|++++|.. +.+|. + .+++|+.|++..+
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCS
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCc
Confidence 011 11235566666666666666 566666666666666654 55552 3 5555555554322
Q ss_pred ------------ccccccc--------------------------CcceeecCccccccCCCCeeecCcccccccccccc
Q 039311 534 ------------LKELKAE--------------------------GIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL 575 (909)
Q Consensus 534 ------------l~~L~l~--------------------------~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 575 (909)
++.|+++ ++.+..+|..+..+++|+.|++++|. +.+...
T Consensus 340 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~---l~~~~~ 416 (606)
T 3vq2_A 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST---LKRVTE 416 (606)
T ss_dssp SCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE---EESTTT
T ss_pred CccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc---cCCccC
Confidence 3344444 44444444444445555555554421 111111
Q ss_pred -CccCCCCCCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCee--cchhhccCCCCCEEeecCCCCCcccCC---CC
Q 039311 576 -PISFGLTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFER--IPESIIQLSHLFSLGISHCERLHSLPE---LP 648 (909)
Q Consensus 576 -~~~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~ 648 (909)
..+..+++|+.|++++|.+.. .|..++.+++|+.|++++|.+.. +|..+..+++|+.|+|++|......|. -.
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 234445555555555555553 44455555555555555555552 455555555666666665533332232 22
Q ss_pred CCcCceecccC
Q 039311 649 CDLSDIEAHCC 659 (909)
Q Consensus 649 ~sL~~L~i~~C 659 (909)
++|+.|++++|
T Consensus 497 ~~L~~L~Ls~N 507 (606)
T 3vq2_A 497 HRLQLLNMSHN 507 (606)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 35555555555
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.3e-26 Score=277.42 Aligned_cols=360 Identities=20% Similarity=0.192 Sum_probs=231.0
Q ss_pred CcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC-CC
Q 039311 285 TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI-PP 361 (909)
Q Consensus 285 ~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~-~~ 361 (909)
...++.+.+..+.+. .+.+.+|.++++|++|++++|.+... .+..+. +.+|++|++++|.+..+| ..+ .+
T Consensus 55 l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 55 FSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSF-----SPGSFSGLTSLENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp CTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCC-----CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred CccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCccccc-----ChhhcCCcccCCEEEccCCccccccccccCCC
Confidence 344555555444443 34567888999999999988765432 233444 788899999998888887 334 77
Q ss_pred CCeeEEEcCCCCcc--ccccccccCCCCCEEecCCCcCCCcCCC-CCccc---------------------------ccc
Q 039311 362 ENLVSLEMPHSSIK--QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLAT---------------------------NLE 411 (909)
Q Consensus 362 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~---------------------------~L~ 411 (909)
.+|++|++++|.+. .+|..++++++|++|++++|.+....|. ++.+. +|+
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 88999999988887 4688888888888888888876554443 33332 455
Q ss_pred cccccccccc----------------------------------------------------------ceecccccCCCc
Q 039311 412 SLNFQGCTCL----------------------------------------------------------LETHSSIQYLNK 433 (909)
Q Consensus 412 ~L~L~~c~~l----------------------------------------------------------~~~p~~i~~L~~ 433 (909)
+|++++|... ..+|. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCC
Confidence 5555554321 00111 334445
Q ss_pred ccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc-----------------------cccCcceeeccccCccc
Q 039311 434 LVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE-----------------------LSCNIEELSLDGTAIQE 490 (909)
Q Consensus 434 L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~-----------------------~~~~L~~L~L~~~~i~~ 490 (909)
|+.|++++|. +..+|....+++|+.|++++|.. +.+|. ...+|++|++++|.+..
T Consensus 287 L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 287 VSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp CSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEE
T ss_pred CCEEEecCcc-chhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCC
Confidence 5555555532 34444222345555555555443 33332 23345555555555554
Q ss_pred c---CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc--cccccCCCCeeecCcc
Q 039311 491 F---PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS--SIACLKNLGRLSFESF 565 (909)
Q Consensus 491 l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~ 565 (909)
+ |..+..+++|+.|++++|. +..+|..+..+++|+.|++ +++.+..++. .+..+++|+.|++++|
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF---------QHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEEC---------TTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeEC---------CCCccCCccChhhhhccccCCEEECcCC
Confidence 3 4555556666666666554 3334455555555555555 5666666543 6788889999998873
Q ss_pred ccccccccccCccCCCCCCCEEecCCCCCCC--cccccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCc
Q 039311 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~ 642 (909)
.+.......+..+++|+.|++++|.+.+ +|..++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+...
T Consensus 435 ---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 435 ---NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp ---CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 2333334456778899999999998885 677888889999999999988854 5678888999999999885444
Q ss_pred ccCC---CCCCcCceecccCcccccccCc
Q 039311 643 SLPE---LPCDLSDIEAHCCSSLEALSGL 668 (909)
Q Consensus 643 ~lp~---l~~sL~~L~i~~C~~L~~l~~~ 668 (909)
..|. -.++|+.|++++|. ++++|..
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred cCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 4454 24578888888885 6666653
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1e-26 Score=278.48 Aligned_cols=347 Identities=20% Similarity=0.191 Sum_probs=204.1
Q ss_pred CcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc--CCCCCCCCeeEEEcCCCCccccc-c
Q 039311 304 NAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL--SSKIPPENLVSLEMPHSSIKQLW-K 379 (909)
Q Consensus 304 ~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~L~~~~i~~lp-~ 379 (909)
.+.+|.++++|++|++.+|.+.... +..+. +++|++|++++|.+..+ |..+.+.+|++|++++|.+..++ .
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSID-----FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGG-----GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ChhhhcccccccEeeccccCcccCC-----cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 3456677777777777766543321 11233 67788888888888776 55557788888888888887764 4
Q ss_pred ccccCCCCC--EEecCCCcCCCcCCCCCccc-------------------------------------------------
Q 039311 380 GVQRLVNLK--HINLSHSEHLTKIPDLSLAT------------------------------------------------- 408 (909)
Q Consensus 380 ~~~~L~~L~--~L~Ls~~~~l~~~p~l~~l~------------------------------------------------- 408 (909)
.+..+++|+ .|++++|.+....|......
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 566677777 67777766554444321111
Q ss_pred ---cccccccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCc---cccCccee
Q 039311 409 ---NLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE---LSCNIEEL 481 (909)
Q Consensus 409 ---~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L 481 (909)
+|++|++++|......+..++.+++|++|++++| .++.+|..+ ++++|++|++++|......|. ...+|+.|
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 2333333333222222233445555555555553 234444433 355555555555443322221 12344455
Q ss_pred eccccCcc-ccCcc-cccCCCCCEEeccCCCCCCcC--cccccCCCCCCeeeccc---------------ccccccccCc
Q 039311 482 SLDGTAIQ-EFPSS-IERLSSLILLNLGNCLRLEGL--PSKICKLKSLERLNLAE---------------ALKELKAEGI 542 (909)
Q Consensus 482 ~L~~~~i~-~lp~~-i~~l~~L~~L~L~~c~~l~~l--p~~l~~L~~L~~L~l~~---------------~l~~L~l~~~ 542 (909)
++++|.+. .+|.. ++.+++|+.|++++|...... |..++.+++|+.|++.. +|+.|+++++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 55544443 33332 444445555555444333222 33344444444444421 2344445666
Q ss_pred ceeec-C-ccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC----cccccCCCCCCcEEECCCCC
Q 039311 543 AIREV-P-SSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE----LPECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 543 ~~~~l-p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~----lp~~l~~l~~L~~L~L~~n~ 616 (909)
.+... | ..+..+++|+.|++++| .+.......+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHS---LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTC---CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred cCCCcccchhhhCcccCCEEECCCC---ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 66644 2 34788999999999873 2333334446778999999999998875 23568889999999999999
Q ss_pred Ceec-chhhccCCCCCEEeecCCCCCcccCCCCC---CcCceecccCc
Q 039311 617 FERI-PESIIQLSHLFSLGISHCERLHSLPELPC---DLSDIEAHCCS 660 (909)
Q Consensus 617 l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l~~---sL~~L~i~~C~ 660 (909)
++.+ |..+..+++|+.|+|++|+.....|+.+. +| .|++.+|.
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 9865 67889999999999999865555554333 45 67777773
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=273.06 Aligned_cols=367 Identities=21% Similarity=0.264 Sum_probs=254.3
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPEN 363 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~ 363 (909)
.++.+.+..+.+. .+...+|.++++|+.|++.+|.+... .+..+. +.+|++|++++|.++.+|. .+ .+.+
T Consensus 29 ~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 29 STKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCcc-----CcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 4555555444443 34567899999999999998765322 223344 7899999999999988874 44 7889
Q ss_pred eeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCC-cCCC-CCccccccccccccccccceecccccCCCcc----cE
Q 039311 364 LVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLT-KIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKL----VV 436 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L----~~ 436 (909)
|++|++++|.+..++. .++++++|++|++++|.+.. .+|. ++++++|++|++++|......+..++.+++| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999998875 68899999999999998765 3565 8889999999999987766666777777777 78
Q ss_pred eccccccCccccCccccCCcCcEEEccCCCC-------------------------------------------------
Q 039311 437 LNLKHCRSLTSLSTSIHLGSLKKLILSGCSN------------------------------------------------- 467 (909)
Q Consensus 437 L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~------------------------------------------------- 467 (909)
|++++|......|..+...+|+.|++++|..
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 8888765333333333333566665555410
Q ss_pred ---------CcccCc---cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCccc-----------------
Q 039311 468 ---------LMSFPE---LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSK----------------- 518 (909)
Q Consensus 468 ---------l~~lp~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~----------------- 518 (909)
.+..|. ...+|+.|+++++.+..+|.++..+ +|+.|++++|... .+|..
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccc
Confidence 000111 1245666666666666666666555 5666665555432 33321
Q ss_pred ---ccCCCCCCeeecc-----------------cccccccccCcceeecCccccccCCCCeeecCcccccccccccc-Cc
Q 039311 519 ---ICKLKSLERLNLA-----------------EALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL-PI 577 (909)
Q Consensus 519 ---l~~L~~L~~L~l~-----------------~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~ 577 (909)
...+++|+.|++. .+++.|+++++.+..+|..+..+++|+.|++++|. +..... ..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN---LKQMSEFSV 416 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE---EESCTTSCT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc---cccccchhh
Confidence 1456666666663 23566677777777777777788888888887732 222222 24
Q ss_pred cCCCCCCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCCCCcccCC---CCCCc
Q 039311 578 SFGLTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDL 651 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL 651 (909)
+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|......|. -.++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 6678999999999998885 6777888999999999999886 6888899999999999999865444454 24578
Q ss_pred CceecccCccccccc
Q 039311 652 SDIEAHCCSSLEALS 666 (909)
Q Consensus 652 ~~L~i~~C~~L~~l~ 666 (909)
+.|++.+| .++.++
T Consensus 497 ~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 497 QVLNMASN-QLKSVP 510 (570)
T ss_dssp CEEECCSS-CCSCCC
T ss_pred CEEeCCCC-cCCCCC
Confidence 89999887 455554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.1e-27 Score=277.57 Aligned_cols=372 Identities=21% Similarity=0.237 Sum_probs=253.7
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~ 362 (909)
..++.+.+..+.+. .+.+.+|.++++|++|++++|.+... .+..+. +.+|++|++++|.+..+|.. + .+.
T Consensus 26 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTI-----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCcc-----ChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 34565555555443 34467899999999999998875432 223344 78999999999999988875 4 789
Q ss_pred CeeEEEcCCCCcccc--ccccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceecccccCCCcccEec
Q 039311 363 NLVSLEMPHSSIKQL--WKGVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLN 438 (909)
Q Consensus 363 ~L~~L~L~~~~i~~l--p~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~ 438 (909)
+|++|++++|.+..+ |..++++++|++|++++|...+.+| .+..+++|++|++++|......|..++.+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 999999999999854 6778999999999999998677766 489999999999999988877888888887777777
Q ss_pred cccccCccccCccc--cCCcCcEEEccCCCCCcc------cCc-------------------------------------
Q 039311 439 LKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMS------FPE------------------------------------- 473 (909)
Q Consensus 439 L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~------lp~------------------------------------- 473 (909)
+++|. ...+|... .+++|++|++++|...+. +..
T Consensus 179 l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 179 LHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred cccCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 77654 23333322 255555555555432221 000
Q ss_pred --------------------------------------------------cccCcceeeccccCccccCccc-ccCCCCC
Q 039311 474 --------------------------------------------------LSCNIEELSLDGTAIQEFPSSI-ERLSSLI 502 (909)
Q Consensus 474 --------------------------------------------------~~~~L~~L~L~~~~i~~lp~~i-~~l~~L~ 502 (909)
..++++.|++++|.+..+|..+ ..+++|+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc
Confidence 1134566666666666666665 4577777
Q ss_pred EEeccCCCCCCcCcc---cccCCCCCCeeecccccccccccCcceeecC---ccccccCCCCeeecCccccccccccccC
Q 039311 503 LLNLGNCLRLEGLPS---KICKLKSLERLNLAEALKELKAEGIAIREVP---SSIACLKNLGRLSFESFMCHEQMGLLLP 576 (909)
Q Consensus 503 ~L~L~~c~~l~~lp~---~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 576 (909)
.|++++|...+.+|. .++.+++|+.|++ ++|.+..++ ..+..+++|+.|++++|... ..+.
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L---------s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~ 404 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVL---------SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH----PMPD 404 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEEC---------TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC----CCCS
T ss_pred EEEccCCccccccccchhhhhccccCcEEEc---------cCCcccccccchhhhhcCCCCCEEECCCCCCc----cCCh
Confidence 777777766555432 2566677777666 555666554 34777888888888874322 2233
Q ss_pred ccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC--CCCCcCce
Q 039311 577 ISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE--LPCDLSDI 654 (909)
Q Consensus 577 ~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l~~sL~~L 654 (909)
.+..+++|+.|++++|.+..+|..+ .++|+.|++++|+++.++ ..+++|+.|+|++| .++.+|. ..++|+.|
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L 478 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVM 478 (549)
T ss_dssp CCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEE
T ss_pred hhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEE
Confidence 4566788888888888887776554 257888888888887665 46778888888886 5667775 35678888
Q ss_pred ecccCcccccccCcchhccccCCCcceeEecccC
Q 039311 655 EAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCF 688 (909)
Q Consensus 655 ~i~~C~~L~~l~~~~~l~~~~~~~~~~l~~~~C~ 688 (909)
++++| .|+.++.... .....+..+.+.+++
T Consensus 479 ~Ls~N-~l~~~~~~~~---~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 479 KISRN-QLKSVPDGIF---DRLTSLQKIWLHTNP 508 (549)
T ss_dssp ECCSS-CCCCCCTTGG---GGCTTCCEEECCSSC
T ss_pred ecCCC-ccCCcCHHHH---hcCcccCEEEecCCC
Confidence 88876 4554443210 122334556665554
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=272.45 Aligned_cols=349 Identities=18% Similarity=0.214 Sum_probs=249.2
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCe
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENL 364 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L 364 (909)
..++.+.+..+.+ ..+.+.+|.++++|++|++++|.+.+. .+..+. +++|++|++++|.++.+|.. .+.+|
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYL-----DISVFKFNQELEYLDLSHNKLVKISCH-PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEE-----EGGGGTTCTTCCEEECCSSCCCEEECC-CCCCC
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCc-----ChHHhhcccCCCEEecCCCceeecCcc-ccCCc
Confidence 4455555554443 334457899999999999998876432 123334 78999999999999999988 88999
Q ss_pred eEEEcCCCCccc--cccccccCCCCCEEecCCCcCCCcCCCCCccccc--cccccccccc--cceecccccC--------
Q 039311 365 VSLEMPHSSIKQ--LWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNL--ESLNFQGCTC--LLETHSSIQY-------- 430 (909)
Q Consensus 365 ~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--l~~~p~~i~~-------- 430 (909)
++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..++.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 999999999986 56889999999999999987654 346666777 8888888766 4444444433
Q ss_pred ------------------CCcccEecccccc-------CccccCc---------------------------cccCCcCc
Q 039311 431 ------------------LNKLVVLNLKHCR-------SLTSLST---------------------------SIHLGSLK 458 (909)
Q Consensus 431 ------------------L~~L~~L~L~~c~-------~l~~lp~---------------------------~~~l~~L~ 458 (909)
+++|+.|++++|. ....+|. ....++|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 4555555555542 0000000 00123555
Q ss_pred EEEccCCCCCcccCccc----------------------------------cCcceeeccccCccccCcccccCCCCCEE
Q 039311 459 KLILSGCSNLMSFPELS----------------------------------CNIEELSLDGTAIQEFPSSIERLSSLILL 504 (909)
Q Consensus 459 ~L~Ls~c~~l~~lp~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 504 (909)
.|++++|...+.+|... .+++.|++++|.+..++. ...+++|++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 329 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEE
Confidence 55555554333444322 236666666666554431 2688999999
Q ss_pred eccCCCCCCcCcccccCCCCCCeeecccccccccccCccee---ecCccccccCCCCeeecCccccccccc-cccCccCC
Q 039311 505 NLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR---EVPSSIACLKNLGRLSFESFMCHEQMG-LLLPISFG 580 (909)
Q Consensus 505 ~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~ 580 (909)
++++|...+.+|..++.+++|+.|++. +|.+. .+|..+..+++|+.|++++|.. .+ .....+..
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~---------~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l---~~~l~~~~~~~ 397 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQ---------MNQLKELSKIAEMTTQMKSLQQLDISQNSV---SYDEKKGDCSW 397 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECC---------SSCCCBHHHHHHHHTTCTTCCEEECCSSCC---BCCGGGCSCCC
T ss_pred EeECCccChhhhhhhccCCCCCEEEcc---------CCccCccccchHHHhhCCCCCEEECCCCcC---Ccccccchhcc
Confidence 999998888899999999999999884 44555 4556789999999999998433 32 12223667
Q ss_pred CCCCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC----CCCcCcee
Q 039311 581 LTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL----PCDLSDIE 655 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----~~sL~~L~ 655 (909)
+++|+.|++++|.+.. +|..+. ++|+.|++++|+++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 8999999999999974 555554 7999999999999999999999999999999997 57788763 34677777
Q ss_pred cccCc
Q 039311 656 AHCCS 660 (909)
Q Consensus 656 i~~C~ 660 (909)
+.+++
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 77664
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=266.46 Aligned_cols=360 Identities=19% Similarity=0.225 Sum_probs=234.9
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~ 362 (909)
..++.+.+..+.+. .+.+.+|.++++|++|++.+|.+... .+..+. +.+|++|++++|.++.+|.. + .+.
T Consensus 52 ~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCcc-----CHhhhcCccccccccccccccccCCCccccccc
Confidence 44555544444433 34567888999999999988765322 123344 78889999998888888762 3 778
Q ss_pred CeeEEEcCCCCccc--cccccccCCCCCEEecCCCcCCCcCCC-CCccccc----cccccccccccce------------
Q 039311 363 NLVSLEMPHSSIKQ--LWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNL----ESLNFQGCTCLLE------------ 423 (909)
Q Consensus 363 ~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L----~~L~L~~c~~l~~------------ 423 (909)
+|++|++++|.+.. +|..++++++|++|++++|.+....|. ++.+++| ++|++++|.....
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 89999999888875 678888888899998888876554443 4455555 4455554432221
Q ss_pred ---------------------------------------------------------------------ecccccCCCcc
Q 039311 424 ---------------------------------------------------------------------THSSIQYLNKL 434 (909)
Q Consensus 424 ---------------------------------------------------------------------~p~~i~~L~~L 434 (909)
.|..++.+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 22334445566
Q ss_pred cEeccccccCccccCcccc-CCcCcEEEccCCCCCcccCc-cccCcceeeccccCccccCcccccCCCCCEEeccCCCCC
Q 039311 435 VVLNLKHCRSLTSLSTSIH-LGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRL 512 (909)
Q Consensus 435 ~~L~L~~c~~l~~lp~~~~-l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l 512 (909)
+.|++++|. +..+|..+. + +|+.|++++|... .+|. ...+|+.|++++|.+...... ..+++|+.|++++|...
T Consensus 285 ~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 285 SSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp SEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCB
T ss_pred cEEEecCcc-chhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccC
Confidence 666666543 344554442 3 5555555555433 3332 233444444444444322221 45556666666665433
Q ss_pred CcC--cccccCCCCCCeeeccc--------------ccccccccCcceeecCc--cccccCCCCeeecCccccccccccc
Q 039311 513 EGL--PSKICKLKSLERLNLAE--------------ALKELKAEGIAIREVPS--SIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 513 ~~l--p~~l~~L~~L~~L~l~~--------------~l~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
... |..+..+++|+.|++.. +++.|+++++.+...+. .+..+++|+.|++++| .+....
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~ 437 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAF 437 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS---CCEECC
T ss_pred ccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC---cccccc
Confidence 221 44455566666666532 35555667777776643 6889999999999983 333333
Q ss_pred cCccCCCCCCCEEecCCCCCC--CcccccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCcccCC-C---
Q 039311 575 LPISFGLTSLTYLRLTDCGII--ELPECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLHSLPE-L--- 647 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~-l--- 647 (909)
...+.++++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+ |..+..+++|+.|+|++|. ++.+|. .
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhc
Confidence 445778999999999999987 4899999999999999999999966 7889999999999999984 555543 2
Q ss_pred CCCcCceecccCc
Q 039311 648 PCDLSDIEAHCCS 660 (909)
Q Consensus 648 ~~sL~~L~i~~C~ 660 (909)
.++|+.|++.+++
T Consensus 517 l~~L~~L~l~~N~ 529 (570)
T 2z63_A 517 LTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCcEEEecCCc
Confidence 3466667776654
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.9e-25 Score=247.88 Aligned_cols=279 Identities=20% Similarity=0.254 Sum_probs=140.8
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCC
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVN 386 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~ 386 (909)
+..+++|+.|++.++..... .++. +++|++|++++|.++.+|....+.+|++|++++|.+..++ .+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-------~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-------QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred chhcccccEEEEeCCccccc-------hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 34566677777665543221 1222 5566666666666666655335566666666666666654 3566666
Q ss_pred CCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCC
Q 039311 387 LKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS 466 (909)
Q Consensus 387 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~ 466 (909)
|++|++++|.+. .++.+..+++|++|++++|.....++ .+..+++|++|++++|. +..++....+++|+.|++++|.
T Consensus 112 L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 112 LRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSC
T ss_pred CCEEECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCc
Confidence 666666666533 23335566666666666665444433 25666666666666643 3333333345556666665543
Q ss_pred CCcccCc--cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 467 NLMSFPE--LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 467 ~l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
.. .++. ...+|+.|++++|.+..++. +..+++|+.|++++| .+
T Consensus 189 l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n---------------------------------~l 233 (347)
T 4fmz_A 189 IE-DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN---------------------------------KI 233 (347)
T ss_dssp CC-CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS---------------------------------CC
T ss_pred cc-ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC---------------------------------cc
Confidence 22 2221 22344455555554444433 444455555555544 33
Q ss_pred eecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe-ecchh
Q 039311 545 REVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE-RIPES 623 (909)
Q Consensus 545 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~ 623 (909)
..++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.+. ..|..
T Consensus 234 ~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 234 TDLSP-LANLSQLTWLEIGTNQISD-----INAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCC-----CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCCcc-hhcCCCCCEEECCCCccCC-----ChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhH
Confidence 33333 4444445555544421111 123344455555555555555442 3444555555555555554 22334
Q ss_pred hccCCCCCEEeecCCC
Q 039311 624 IIQLSHLFSLGISHCE 639 (909)
Q Consensus 624 i~~l~~L~~L~L~~c~ 639 (909)
+..+++|+.|++++|+
T Consensus 307 l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHTCTTCSEEECCSSS
T ss_pred hhccccCCEEEccCCc
Confidence 4555555555555543
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=5.4e-26 Score=268.82 Aligned_cols=346 Identities=18% Similarity=0.217 Sum_probs=263.7
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccccc-cccCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWKG-VQRLVNL 387 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~~-~~~L~~L 387 (909)
++|+.|++++|.+.+. .+..+. +++|++|++++|.+..++. .+ .+.+|++|++++|.+..++.. ++.+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI-----GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEE-----CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCcc-----ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 6899999998875432 123444 8899999999999999885 44 889999999999999998865 8999999
Q ss_pred CEEecCCCcCCC-cCC-CCCccccccccccccccccceec-ccccCCCcccEeccccccCccccCccc-cCCcCcEEEcc
Q 039311 388 KHINLSHSEHLT-KIP-DLSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILS 463 (909)
Q Consensus 388 ~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls 463 (909)
++|++++|.+.. ..| .++.+++|++|++++|.....+| ..++.+++|++|++++|......|..+ .+++|+.|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999998765 234 58999999999999998777776 579999999999999987655567666 59999999999
Q ss_pred CCCCCcccCc----cccCcceeeccccCccccC---cc-cccCCCCCEEec----------------------------c
Q 039311 464 GCSNLMSFPE----LSCNIEELSLDGTAIQEFP---SS-IERLSSLILLNL----------------------------G 507 (909)
Q Consensus 464 ~c~~l~~lp~----~~~~L~~L~L~~~~i~~lp---~~-i~~l~~L~~L~L----------------------------~ 507 (909)
+|.. ..+|. ...+|++|++++|.+..++ .. ...+++|+.|++ +
T Consensus 181 ~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 8764 33343 3578999999999888652 12 223444555544 4
Q ss_pred CCCCCC--cC----cccccCCCCCCeeecc--------------------cccccccccCcceeecCccc-cccCCCCee
Q 039311 508 NCLRLE--GL----PSKICKLKSLERLNLA--------------------EALKELKAEGIAIREVPSSI-ACLKNLGRL 560 (909)
Q Consensus 508 ~c~~l~--~l----p~~l~~L~~L~~L~l~--------------------~~l~~L~l~~~~~~~lp~~i-~~l~~L~~L 560 (909)
+|...+ .+ ...+..+++|+.|.+. ..++.++++++.+..+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 443211 11 1123455666666542 35777888888888999877 579999999
Q ss_pred ecCccccccccccccCccCCCCCCCEEecCCCCCCCcc---cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecC
Q 039311 561 SFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP---ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp---~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 637 (909)
++++|............+..+++|+.|++++|.+..++ ..+..+++|+.|++++|+++.+|..+..+++|+.|++++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 99984322211001223567899999999999999875 458899999999999999999999999999999999999
Q ss_pred CCCCcccCC-CCCCcCceecccCcccccc
Q 039311 638 CERLHSLPE-LPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 638 c~~L~~lp~-l~~sL~~L~i~~C~~L~~l 665 (909)
|. ++.+|. .+++|+.|++++| .|+.+
T Consensus 420 N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 420 TG-IRVVKTCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp SC-CSCCCTTSCTTCSEEECCSS-CCSCC
T ss_pred CC-cccccchhcCCceEEECCCC-Chhhh
Confidence 75 777775 5678999999988 44443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=264.27 Aligned_cols=348 Identities=15% Similarity=0.125 Sum_probs=251.2
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CCCCeeEEEcCCCCccccccccccCCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLK 388 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~ 388 (909)
++|+.|++++|.+.+... ..+. +++|++|++++|.+..+ |..+ .+.+|++|++++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-----SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-----HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcccccCh-----hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 799999999887654321 1223 78899999999999988 4555 789999999999999999987 899999
Q ss_pred EEecCCCcCCC-cCCC-CCccccccccccccccccceecccccCCCcc--cEeccccccC--ccccCccc----------
Q 039311 389 HINLSHSEHLT-KIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKL--VVLNLKHCRS--LTSLSTSI---------- 452 (909)
Q Consensus 389 ~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L--~~L~L~~c~~--l~~lp~~~---------- 452 (909)
+|++++|.+.. .+|. ++.+++|++|++++|.... ..++.+++| ++|++++|.. ....|..+
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 99999998776 3554 8999999999999987654 456777777 9999998764 22222222
Q ss_pred -----------------cCCcCcEEEccCCC-------C------CcccCc-----------------------cccCcc
Q 039311 453 -----------------HLGSLKKLILSGCS-------N------LMSFPE-----------------------LSCNIE 479 (909)
Q Consensus 453 -----------------~l~~L~~L~Ls~c~-------~------l~~lp~-----------------------~~~~L~ 479 (909)
++++|+.|++++|. . +..++. ...+|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 26677777777664 0 111110 012788
Q ss_pred eeeccccCcc-ccCccc-----ccCCCCCEEe--------------------------ccCCCCCCcCcccccCCCCCCe
Q 039311 480 ELSLDGTAIQ-EFPSSI-----ERLSSLILLN--------------------------LGNCLRLEGLPSKICKLKSLER 527 (909)
Q Consensus 480 ~L~L~~~~i~-~lp~~i-----~~l~~L~~L~--------------------------L~~c~~l~~lp~~l~~L~~L~~ 527 (909)
+|++++|.+. .+|.++ +.+++|+.++ +++|.... .+ ....+++|+.
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccE
Confidence 9999999988 888887 6665555554 44443221 11 1257778887
Q ss_pred eecccccccccccCcceee-cCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC-cccc-cCCC
Q 039311 528 LNLAEALKELKAEGIAIRE-VPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE-LPEC-LGQL 604 (909)
Q Consensus 528 L~l~~~l~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~-l~~l 604 (909)
|++ +++.+.. +|..++.+++|+.|++++|....+. ..+..+..+++|+.|++++|.+.. +|.. +..+
T Consensus 329 L~L---------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 329 LDF---------SNNLLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp EEC---------CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred EEe---------ECCccChhhhhhhccCCCCCEEEccCCccCccc-cchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 777 4555655 6788999999999999984433211 112336789999999999999997 8875 7889
Q ss_pred CCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccCcchhccccCCCcc
Q 039311 605 SSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 680 (909)
Q Consensus 605 ~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~~~l~~~~~~~~~ 680 (909)
++|+.|++++|+++ .+|..+. ++|+.|++++| .++.+|. ..++|+.|++.+| .++.++... + .....+.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~-~--~~l~~L~ 471 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGI-F--DRLTSLQ 471 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT-T--TTCTTCC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHH-h--ccCCccc
Confidence 99999999999996 5665543 79999999998 5678886 3568999999998 577776531 0 1223455
Q ss_pred eeEecccC
Q 039311 681 FFYFVNCF 688 (909)
Q Consensus 681 ~l~~~~C~ 688 (909)
.+.+.+++
T Consensus 472 ~L~l~~N~ 479 (520)
T 2z7x_B 472 KIWLHTNP 479 (520)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 66666554
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6.7e-26 Score=261.42 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=212.2
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC-ccC-CCC-CCCCeeEEEcCCCCcccc-ccccccCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK-SLS-SKI-PPENLVSLEMPHSSIKQL-WKGVQRLVN 386 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~-~lp-~~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~ 386 (909)
++|+.|++++|.+.+. .+..+. +++|++|++++|.+. .++ ..+ .+.+|++|++++|.+..+ |..+.++++
T Consensus 30 ~~l~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-----NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEE-----CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCccCcC-----ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 5677777776654321 123333 667777777777664 443 333 567777777777777665 556777777
Q ss_pred CCEEecCCCcCCCcCC-C--CCccccccccccccccccceeccc-ccCCCcccEeccccccCccccCccc-c--CCcCcE
Q 039311 387 LKHINLSHSEHLTKIP-D--LSLATNLESLNFQGCTCLLETHSS-IQYLNKLVVLNLKHCRSLTSLSTSI-H--LGSLKK 459 (909)
Q Consensus 387 L~~L~Ls~~~~l~~~p-~--l~~l~~L~~L~L~~c~~l~~~p~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~--l~~L~~ 459 (909)
|++|++++|.+....| . +..+++|++|++++|......|.. ++.+++|++|++++|......+..+ . ..+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 7777777776554333 2 667777777777776655554554 6677777777777765333333333 1 256777
Q ss_pred EEccCCCCCcccCc-----------cccCcceeeccccCcc-ccCcccccC---CCCCEEeccCCCCCCcCcccccCCCC
Q 039311 460 LILSGCSNLMSFPE-----------LSCNIEELSLDGTAIQ-EFPSSIERL---SSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 460 L~Ls~c~~l~~lp~-----------~~~~L~~L~L~~~~i~-~lp~~i~~l---~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
|++++|.....-+. ...+|+.|++++|.+. ..|..+..+ ++|+.|++++|........ ...++.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 263 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKD 263 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhcc
Confidence 77776554332211 1135677777777665 344444332 6677777776644332110 011111
Q ss_pred CCeeec----ccccccccccCcceeec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-c
Q 039311 525 LERLNL----AEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-P 598 (909)
Q Consensus 525 L~~L~l----~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p 598 (909)
+....+ ..+++.++++++.+..+ |..++.+++|+.|++++|. +.+.....+..+++|+.|+|++|.+.++ |
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE---INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc---ccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 110000 02344555566666654 5678889999999998843 3333344577889999999999999875 6
Q ss_pred cccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCcccCC----CCCCcCceecccCc
Q 039311 599 ECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLHSLPE----LPCDLSDIEAHCCS 660 (909)
Q Consensus 599 ~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C~ 660 (909)
..++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++| .++.+|. ..++|+.|++.+++
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 7788999999999999999866 678889999999999996 4666664 23466777776654
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8e-25 Score=265.71 Aligned_cols=346 Identities=19% Similarity=0.153 Sum_probs=238.5
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~ 362 (909)
..++.+.+..+.+. .+...+|.++++|++|++.+|.+.+.. +..+. +++|++|++++|.+..+|.. + .+.
T Consensus 25 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLE-----PELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSCCCCCC-----TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCccCccC-----HHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 34565555554443 345678999999999999987654322 12223 78999999999999999974 4 789
Q ss_pred CeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceeccccc--CCCcccEec
Q 039311 363 NLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQ--YLNKLVVLN 438 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~--~L~~L~~L~ 438 (909)
+|++|++++|.+..++ ..++++++|++|++++|.+....|. ++.+++|++|++++|......+..++ .+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 9999999999999887 5688999999999999988777665 88999999999999876555454444 568999999
Q ss_pred cccccCccccCccc-c---------------------------CCcCcEEEccCCCCCcccCccc-----cCcceeeccc
Q 039311 439 LKHCRSLTSLSTSI-H---------------------------LGSLKKLILSGCSNLMSFPELS-----CNIEELSLDG 485 (909)
Q Consensus 439 L~~c~~l~~lp~~~-~---------------------------l~~L~~L~Ls~c~~l~~lp~~~-----~~L~~L~L~~ 485 (909)
+++|......|..+ . .++|+.|++++|...+..|..+ .+|+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 99874332222222 1 2567888888876655555433 3499999999
Q ss_pred cCccccC-cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc------------------------cccccccc
Q 039311 486 TAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE------------------------ALKELKAE 540 (909)
Q Consensus 486 ~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~------------------------~l~~L~l~ 540 (909)
|.+..++ ..++.+++|++|++++|...+..|..++.+++|+.|++.. +++.|+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 9998765 5689999999999999988877888889999999998842 45667777
Q ss_pred CcceeecCc-cccccCCCCeeecCccccccccccccCccC--CCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCC
Q 039311 541 GIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISF--GLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 541 ~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~ 616 (909)
++.+..++. .+..+++|+.|++++|... ........+. ..++|+.|++++|.+..+ |..+..+++|+.|++++|.
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSC-CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchh-hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 777766543 4777888888888763210 0000000011 123455555555555542 3455555666666666665
Q ss_pred Ce-ecc-hhhccCCCCCEEeecCCC
Q 039311 617 FE-RIP-ESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 617 l~-~lp-~~i~~l~~L~~L~L~~c~ 639 (909)
+. .+| ..+..+++|+.|++++|+
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CccccCcccccCcccccEEecCCCC
Confidence 54 343 345555555555555553
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.4e-25 Score=255.47 Aligned_cols=341 Identities=18% Similarity=0.196 Sum_probs=268.0
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~~ 362 (909)
..++.+.+..+.+. .+.+.+|.++++|++|++.+|.... ...+..+. +++|++|++++|.+..+ |..+ .+.
T Consensus 30 ~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCccC--cCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 44566655555443 3456789999999999999876431 11223344 88999999999999887 5556 789
Q ss_pred CeeEEEcCCCCccc-cccc--cccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCC--Cccc
Q 039311 363 NLVSLEMPHSSIKQ-LWKG--VQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYL--NKLV 435 (909)
Q Consensus 363 ~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L--~~L~ 435 (909)
+|++|++++|.+.. ++.. +..+++|++|++++|.+....|. +..+++|++|++++|......+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999985 4444 88999999999999998887776 8899999999999998887778888776 7999
Q ss_pred EeccccccCccccCcc----------ccCCcCcEEEccCCCCCcccCccc------cCcceeeccccCccccC-------
Q 039311 436 VLNLKHCRSLTSLSTS----------IHLGSLKKLILSGCSNLMSFPELS------CNIEELSLDGTAIQEFP------- 492 (909)
Q Consensus 436 ~L~L~~c~~l~~lp~~----------~~l~~L~~L~Ls~c~~l~~lp~~~------~~L~~L~L~~~~i~~lp------- 492 (909)
.|++++|. +..++.. ..+++|+.|++++|...+..|..+ .+++.|+++++.+....
T Consensus 184 ~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 184 LLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred ccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 99999965 4444332 246899999999998776666432 67889999887544211
Q ss_pred ----cccc--cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCcc
Q 039311 493 ----SSIE--RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESF 565 (909)
Q Consensus 493 ----~~i~--~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 565 (909)
..+. ..++|+.|++++|......|..++.+++|+.|++ +++.+..+ |..+..+++|+.|++++|
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L---------s~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL---------AQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC---------TTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC---------CCCcccccChhHhcCcccCCEEECCCC
Confidence 1122 2368999999999988888888999999999988 45566655 557899999999999984
Q ss_pred ccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCCCCcc
Q 039311 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCERLHS 643 (909)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~ 643 (909)
. +.......+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+.-..
T Consensus 334 ~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 334 F---LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp C---CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred c---cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 3 3333344577899999999999999975 77899999999999999999988864 58999999999999875544
Q ss_pred cC
Q 039311 644 LP 645 (909)
Q Consensus 644 lp 645 (909)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.4e-25 Score=263.80 Aligned_cols=349 Identities=19% Similarity=0.198 Sum_probs=255.8
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCe
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENL 364 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L 364 (909)
..++.+.+..+.+ ..+.+.+|.++++|+.|++++|.+... .+..+. +++|++|++++|.++.+|.. .+.+|
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSL-----DFHVFLFNQDLEYLDVSHNRLQNISCC-PMASL 123 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECSC-CCTTC
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcC-----CHHHhCCCCCCCEEECCCCcCCccCcc-ccccC
Confidence 3455555544444 344567899999999999998875432 233444 78999999999999999988 89999
Q ss_pred eEEEcCCCCccccc--cccccCCCCCEEecCCCcCCCcCCCCCccccc--cccccccccc--cceeccccc---------
Q 039311 365 VSLEMPHSSIKQLW--KGVQRLVNLKHINLSHSEHLTKIPDLSLATNL--ESLNFQGCTC--LLETHSSIQ--------- 429 (909)
Q Consensus 365 ~~L~L~~~~i~~lp--~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--l~~~p~~i~--------- 429 (909)
++|++++|.+..++ ..++++++|++|++++|.+.. .++..+++| ++|++++|.. ....|..+.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 99999999999875 689999999999999987654 346666666 9999999876 444444443
Q ss_pred -----------------CCCcccEeccccccC--------------------------------ccccCccccCCcCcEE
Q 039311 430 -----------------YLNKLVVLNLKHCRS--------------------------------LTSLSTSIHLGSLKKL 460 (909)
Q Consensus 430 -----------------~L~~L~~L~L~~c~~--------------------------------l~~lp~~~~l~~L~~L 460 (909)
.+++|+.|++++|.. +..++......+|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 345677777766420 0011111123478888
Q ss_pred EccCCCCCcccCccc----------------------------------cCcceeeccccCccccCcccccCCCCCEEec
Q 039311 461 ILSGCSNLMSFPELS----------------------------------CNIEELSLDGTAIQEFPSSIERLSSLILLNL 506 (909)
Q Consensus 461 ~Ls~c~~l~~lp~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 506 (909)
++++|...+.+|... .+++.|++++|.+..++. .+.+++|++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l 360 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEEC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEEC
Confidence 888776665666543 236666777776654431 268899999999
Q ss_pred cCCCCCCcCcccccCCCCCCeeecccccccccccCcceeec---CccccccCCCCeeecCcccccccccccc-CccCCCC
Q 039311 507 GNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREV---PSSIACLKNLGRLSFESFMCHEQMGLLL-PISFGLT 582 (909)
Q Consensus 507 ~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~ 582 (909)
++|...+.+|..++.+++|+.|++ ++|.+..+ |..+..+++|+.|++++|. +.+... ..+..++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L---------~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~---l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLIL---------QRNGLKNFFKVALMTKNMSSLETLDVSLNS---LNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEEC---------CSSCCCBTTHHHHTTTTCTTCCEEECTTSC---CBSCCSSCCCCCCT
T ss_pred CCCccccchhhhhcccCCCCEEEC---------CCCCcCCcccchhhhcCCCCCCEEECCCCc---CCCccChhhhcCcc
Confidence 999888888999999999999988 44555544 4568899999999999843 332122 2366789
Q ss_pred CCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC----CCCcCceecc
Q 039311 583 SLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL----PCDLSDIEAH 657 (909)
Q Consensus 583 ~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----~~sL~~L~i~ 657 (909)
+|+.|++++|.+.. +|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|++.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence 99999999999974 454443 7999999999999999999999999999999997 56778763 3456667776
Q ss_pred cCc
Q 039311 658 CCS 660 (909)
Q Consensus 658 ~C~ 660 (909)
+++
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5.8e-25 Score=254.27 Aligned_cols=321 Identities=21% Similarity=0.283 Sum_probs=221.1
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCC
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
.+..+++|+.|++++|.+.+... +. +.+|++|++++|.+..++....+.+|++|++++|.+..++. +..++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred chhhhcCCCEEECCCCccCCchh-------hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 36677888888888776544321 23 67788888888888777764477788888888888887765 77788
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++|++++|.+. .++.++.+++|++|++.++ ...++ .++.+++|++|++++|. +..++....+++|+.|++++|
T Consensus 135 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 135 NLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNN 209 (466)
T ss_dssp TCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccC-CChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCC
Confidence 8888888877643 4566777888888887532 22333 37788888888888764 556655456788888888887
Q ss_pred CCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 466 SNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 466 ~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
......| ....+|+.|++++|.+..++ .+..+++|+.|++++|......| +..+++|+.|++ +++.+
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l---------~~n~l 277 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL---------GANQI 277 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC---------CSSCC
T ss_pred cccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC---------CCCcc
Confidence 6544333 23457888888888887764 57778888888888876544333 677777777776 44555
Q ss_pred eecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhh
Q 039311 545 REVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 545 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i 624 (909)
..++. +..+++|+.|++++|.... .+.+..+++|+.|++++|.+.+++. +..+++|+.|++++|+++.++ .+
T Consensus 278 ~~~~~-~~~l~~L~~L~L~~n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l 349 (466)
T 1o6v_A 278 SNISP-LAGLTALTNLELNENQLED-----ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SL 349 (466)
T ss_dssp CCCGG-GTTCTTCSEEECCSSCCSC-----CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GG
T ss_pred Ccccc-ccCCCccCeEEcCCCcccC-----chhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hh
Confidence 55555 7778888888887733222 2235667888888888888877654 677888888888888887775 67
Q ss_pred ccCCCCCEEeecCCCCCcccC-CCCCCcCceecccCc
Q 039311 625 IQLSHLFSLGISHCERLHSLP-ELPCDLSDIEAHCCS 660 (909)
Q Consensus 625 ~~l~~L~~L~L~~c~~L~~lp-~l~~sL~~L~i~~C~ 660 (909)
..+++|+.|++++|+.....| ...++|+.|++.+|+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred ccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 778888888888875433333 123456666666653
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=3.5e-25 Score=245.75 Aligned_cols=298 Identities=20% Similarity=0.243 Sum_probs=230.1
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCe
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENL 364 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L 364 (909)
..++.+.+....+..+ ..+..+++|+.|++.+|.+.+... +. +++|++|++++|.+..+|....+.+|
T Consensus 44 ~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~~~~~~l~~L 112 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDISALQNLTNL 112 (347)
T ss_dssp TTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred ccccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence 3455666655544332 358889999999999887654322 33 78999999999999999866688999
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccC
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS 444 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~ 444 (909)
++|++++|.+..++. +..+++|++|++++|.....++.+..+++|++|++++|.... ++. ++.+++|++|++++|.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~- 188 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQ- 188 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSC-
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCc-
Confidence 999999999999887 889999999999999888888889999999999999987543 333 8899999999999974
Q ss_pred ccccCccccCCcCcEEEccCCCCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCC
Q 039311 445 LTSLSTSIHLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLK 523 (909)
Q Consensus 445 l~~lp~~~~l~~L~~L~Ls~c~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~ 523 (909)
+..++....+++|+.|++++|......+ ....+|++|++++|.+..+|. +..+++|+.|++++|... .++ .+..++
T Consensus 189 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~ 265 (347)
T 4fmz_A 189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-DIN-AVKDLT 265 (347)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCT
T ss_pred ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC-CCh-hHhcCC
Confidence 6677765579999999999976544322 345689999999999999887 889999999999998543 232 355555
Q ss_pred CCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC-cccccC
Q 039311 524 SLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE-LPECLG 602 (909)
Q Consensus 524 ~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~l~ 602 (909)
+|+.|++.. +.+..+ +.+..+++|+.|++++|.+.. .|..++
T Consensus 266 ~L~~L~l~~---------n~l~~~----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 266 KLKMLNVGS---------NQISDI----------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp TCCEEECCS---------SCCCCC----------------------------GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CcCEEEccC---------CccCCC----------------------------hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 555555422 222221 234556778888888888775 456678
Q ss_pred CCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 603 QLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 603 ~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 88888888888888887765 7788888888888875
No 25
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=1.3e-26 Score=300.93 Aligned_cols=234 Identities=19% Similarity=0.231 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHhcCCCC---cccCCccchHHHHHhhCCC--eEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCc
Q 039311 14 LAHLRQILLSAILDDGNV---SIGCPSIGLNFRSKRLSRK--KVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDK 88 (909)
Q Consensus 14 ~~~l~~~ll~~i~~~~~~---~~~~~~~~~~~i~~~L~~k--r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~ 88 (909)
+....++++..+...... ...+.+.....+++.|.+| |+||||||||+.++|+.+ ++|||||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 445566677777532211 1233445666777777766 999999999999888764 6899999999999
Q ss_pred hhhhh-cCCCcEEECCC-CCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHH
Q 039311 89 QVLKN-CGVDTIYEVKE-LFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIK 166 (909)
Q Consensus 89 ~v~~~-~~~~~~y~l~~-L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~ 166 (909)
.|+.. ++...+|+++. |+++||++||...|+.. .+++.+++++|+++|+|+||||+++|++|+++. .+|+..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 99955 56678999996 99999999999999543 345567899999999999999999999999876 57999999
Q ss_pred HHhcCCC-----------cchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcccchhHhhhccc
Q 039311 167 KIKRIPH-----------VDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAEIGISVLVDKCL 233 (909)
Q Consensus 167 ~L~~~~~-----------~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~~~i~~L~~~~l 233 (909)
++..... ..+..++.+||+.|++++|.||+|||+||.++ +++.++.+|.+++..++.++++|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 9976542 24889999999999999999999999999987 8999999999888888899999999999
Q ss_pred cEEe-CC---eEEehHHHHHHHHHHhhhc
Q 039311 234 MVIL-NN---KIMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 234 i~~~-~~---~~~mhdll~e~~~~i~~~~ 258 (909)
|+.. ++ .|.|||++|+++++.+.++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9987 44 3999999999999887654
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.8e-24 Score=250.21 Aligned_cols=317 Identities=20% Similarity=0.242 Sum_probs=254.7
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCC
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L 387 (909)
..+++++.|.+.++.+... .++. +++|++|++++|.++.+|....+.+|++|++++|.+..++. +.++++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI-------DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hHhccccEEecCCCCCccC-------cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence 3467899999987654322 2334 78999999999999999884488999999999999999887 9999999
Q ss_pred CEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCC
Q 039311 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSN 467 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~ 467 (909)
++|++++|.+.. ++.+..+++|++|++++|... .++ .++.+++|++|++++ .+..++...++++|+.|++++|..
T Consensus 115 ~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 115 TGLTLFNNQITD-IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCC-ChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCcC
Confidence 999999997544 555999999999999998644 444 589999999999974 455555555799999999999863
Q ss_pred CcccCc--cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCccee
Q 039311 468 LMSFPE--LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR 545 (909)
Q Consensus 468 l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~ 545 (909)
..++. ...+|++|++++|.+..++. ++.+++|+.|++++|... .++ .+..+++|+.|++ +++.+.
T Consensus 190 -~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l---------~~n~l~ 256 (466)
T 1o6v_A 190 -SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDL---------ANNQIS 256 (466)
T ss_dssp -CCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEEC---------CSSCCC
T ss_pred -CCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEEC---------CCCccc
Confidence 33433 34689999999999998866 888999999999998644 343 4778888888887 445566
Q ss_pred ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhc
Q 039311 546 EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII 625 (909)
Q Consensus 546 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~ 625 (909)
.++. +..+++|+.|++++|.... .+.+..+++|+.|++++|.+..++. ++.+++|+.|++++|+++.++. +.
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~ 328 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VS 328 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCC-----CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GG
T ss_pred cchh-hhcCCCCCEEECCCCccCc-----cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hc
Confidence 6655 8889999999999843332 2237789999999999999998766 7899999999999999997775 78
Q ss_pred cCCCCCEEeecCCCCCcccCC--CCCCcCceecccCc
Q 039311 626 QLSHLFSLGISHCERLHSLPE--LPCDLSDIEAHCCS 660 (909)
Q Consensus 626 ~l~~L~~L~L~~c~~L~~lp~--l~~sL~~L~i~~C~ 660 (909)
.+++|+.|++++| .+..++. ..++|+.|++.+|.
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 9999999999998 4665553 34588889998885
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.8e-24 Score=256.42 Aligned_cols=331 Identities=15% Similarity=0.135 Sum_probs=241.4
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC-CCCCeeEEEcCCCCccccccccccCCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLK 388 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~ 388 (909)
++|+.|++++|.+..... ..+. +++|++|++++|.++.++ ..| .+.+|++|++++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM-----PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCG-----GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCCccccCh-----hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 789999999887654321 2334 789999999999999985 445 789999999999999999987 899999
Q ss_pred EEecCCCcCCCc-CC-CCCccccccccccccccccceecccccCCCcc--cEeccccccC--ccccCccc----------
Q 039311 389 HINLSHSEHLTK-IP-DLSLATNLESLNFQGCTCLLETHSSIQYLNKL--VVLNLKHCRS--LTSLSTSI---------- 452 (909)
Q Consensus 389 ~L~Ls~~~~l~~-~p-~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L--~~L~L~~c~~--l~~lp~~~---------- 452 (909)
+|++++|.+... .| .++++++|++|++++|.... ..++.+++| ++|++++|.. ....|..+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999999987663 34 48999999999999987654 345555565 9999998754 22222211
Q ss_pred -----------------cCCcCcEEEccCCCCC-----------ccc---------------------Cc--cccCccee
Q 039311 453 -----------------HLGSLKKLILSGCSNL-----------MSF---------------------PE--LSCNIEEL 481 (909)
Q Consensus 453 -----------------~l~~L~~L~Ls~c~~l-----------~~l---------------------p~--~~~~L~~L 481 (909)
.+++|+.|++++|... ... +. ...+|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 3567777777775310 000 00 11278899
Q ss_pred eccccCcc-ccCccc-----ccC--------------------------CCCCEEeccCCCCCCcCcccccCCCCCCeee
Q 039311 482 SLDGTAIQ-EFPSSI-----ERL--------------------------SSLILLNLGNCLRLEGLPSKICKLKSLERLN 529 (909)
Q Consensus 482 ~L~~~~i~-~lp~~i-----~~l--------------------------~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~ 529 (909)
++++|.+. .+|..+ ..+ .+|+.|++++|..... + ..+.+++|+.|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-V-CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc-c-CccCCCCceEEE
Confidence 99999988 788766 333 3477777777754221 1 126778888887
Q ss_pred cccccccccccCcceee-cCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC-cccc-cCCCCC
Q 039311 530 LAEALKELKAEGIAIRE-VPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE-LPEC-LGQLSS 606 (909)
Q Consensus 530 l~~~l~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~-l~~l~~ 606 (909)
+ +++.+.. +|..++.+++|+.|++++|....+. .....+..+++|+.|++++|.+.. +|.. +..+++
T Consensus 360 l---------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 360 F---------TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp C---------CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred C---------CCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 7 4455554 6778999999999999984333211 112236789999999999999997 7764 788999
Q ss_pred CcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccCc
Q 039311 607 RSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSGL 668 (909)
Q Consensus 607 L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~ 668 (909)
|+.|++++|+++ .+|..+. ++|+.|++++| .++.+|. -.++|+.|++.++ .|+.++..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 999999999997 5554433 79999999998 6788886 3468999999987 46666653
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-24 Score=244.97 Aligned_cols=296 Identities=11% Similarity=0.099 Sum_probs=141.4
Q ss_pred CCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNF 415 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 415 (909)
.++++|+++++.++.+|..+ .+++|++|++++|.+..++. .+..+++|++|++++|.+....|. ++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 34444444444444444432 33444444444444444432 344444444444444443333333 344444444444
Q ss_pred ccccccceeccc-ccCCCcccEeccccccCccccC-ccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC
Q 039311 416 QGCTCLLETHSS-IQYLNKLVVLNLKHCRSLTSLS-TSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP 492 (909)
Q Consensus 416 ~~c~~l~~~p~~-i~~L~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp 492 (909)
++|... .+|.. ++.+++|++|++++|. +..++ ..+ ++++|+.|++++|.....-...+.+|+.|++++|.+..++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 444322 33322 2444444444444432 22222 112 2444444444444322221223334444444444444322
Q ss_pred cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccc
Q 039311 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 572 (909)
..++|+.|++++|... .+|.. ..++|+.|++ +++.+... ..+..+++|+.|++++| .+.+
T Consensus 203 ----~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l---------~~n~l~~~-~~l~~l~~L~~L~Ls~n---~l~~ 262 (390)
T 3o6n_A 203 ----IPIAVEELDASHNSIN-VVRGP--VNVELTILKL---------QHNNLTDT-AWLLNYPGLVEVDLSYN---ELEK 262 (390)
T ss_dssp ----CCSSCSEEECCSSCCC-EEECC--CCSSCCEEEC---------CSSCCCCC-GGGGGCTTCSEEECCSS---CCCE
T ss_pred ----CCCcceEEECCCCeee-ecccc--ccccccEEEC---------CCCCCccc-HHHcCCCCccEEECCCC---cCCC
Confidence 2234555555554322 22221 1233444433 33333333 24556666666666652 2222
Q ss_pred cccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC-CCCCCc
Q 039311 573 LLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP-ELPCDL 651 (909)
Q Consensus 573 ~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~l~~sL 651 (909)
.....+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|++..+|..+..+++|+.|+|++|+ ++.+| ..+++|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L 341 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTL 341 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCC
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccC
Confidence 2233455677777777777777777666667777777777777777777777777777777777764 34333 233344
Q ss_pred Cceeccc
Q 039311 652 SDIEAHC 658 (909)
Q Consensus 652 ~~L~i~~ 658 (909)
+.|++.+
T Consensus 342 ~~L~l~~ 348 (390)
T 3o6n_A 342 KNLTLSH 348 (390)
T ss_dssp SEEECCS
T ss_pred CEEEcCC
Confidence 5554444
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=4e-24 Score=259.53 Aligned_cols=178 Identities=22% Similarity=0.225 Sum_probs=97.9
Q ss_pred cceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCc-ccccCCCCCCeeecccccccccccCcceeecC-cccccc
Q 039311 478 IEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLP-SKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACL 554 (909)
Q Consensus 478 L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l 554 (909)
|+.|++++|.+..+ |..+..+++|+.|++++|...+.+| ..+..+++|+.| +++++.+..++ ..+..+
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L---------~Ls~n~l~~~~~~~~~~~ 453 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI---------YLSYNKYLQLTRNSFALV 453 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE---------ECCSCSEEECCTTTTTTC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE---------ecCCCCcceeChhhhhcC
Confidence 33334444444332 2234444444444444443333333 234444444444 44555555443 346667
Q ss_pred CCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCeecch---------hh
Q 039311 555 KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPE---------SI 624 (909)
Q Consensus 555 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~---------~i 624 (909)
++|+.|+++++.+... +..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+++.++. .+
T Consensus 454 ~~L~~L~l~~n~l~~~-~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~ 532 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532 (680)
T ss_dssp TTCCEEECTTSCCBCT-TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTT
T ss_pred cccccchhcccccccc-ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhh
Confidence 7777777776443222 1223345667777777777777776554 46777777777777777775432 25
Q ss_pred ccCCCCCEEeecCCCCCcccCC----CCCCcCceecccCcccccccC
Q 039311 625 IQLSHLFSLGISHCERLHSLPE----LPCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 625 ~~l~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C~~L~~l~~ 667 (909)
..+++|+.|+|++| .++.+|. -.++|+.|++.++ .|+.++.
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH
Confidence 66777777777775 4556663 2346677777554 4555443
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=268.17 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=169.8
Q ss_pred CcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CC
Q 039311 285 TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PP 361 (909)
Q Consensus 285 ~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~ 361 (909)
...++.+.+..+.+. .+.+..|.++++|++|++++|.... ...+..+. +++|++|++++|.+..+ |..+ .+
T Consensus 23 p~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 345666666655554 3446788999999999999774311 11134445 78899999999998887 5566 78
Q ss_pred CCeeEEEcCCCCccc-cccc--cccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCC--Ccc
Q 039311 362 ENLVSLEMPHSSIKQ-LWKG--VQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYL--NKL 434 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L--~~L 434 (909)
.+|++|+|++|.+.. +|.. +.++++|++|+|++|.+....+. ++++++|++|++++|......+..++.+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 899999999998875 4544 88899999999999987766553 8889999999999987777677777766 778
Q ss_pred cEeccccccCccccCccc-cCC------cCcEEEccCCCCCcccCcc---------------------------------
Q 039311 435 VVLNLKHCRSLTSLSTSI-HLG------SLKKLILSGCSNLMSFPEL--------------------------------- 474 (909)
Q Consensus 435 ~~L~L~~c~~l~~lp~~~-~l~------~L~~L~Ls~c~~l~~lp~~--------------------------------- 474 (909)
+.|++++|......|..+ .+. +|+.|++++|......+..
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 888888765544444332 122 3778888776433222110
Q ss_pred --------ccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecc
Q 039311 475 --------SCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA 531 (909)
Q Consensus 475 --------~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~ 531 (909)
..+|+.|++++|.+..+ |..+..+++|+.|+|++|......|..++.+++|+.|++.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 13577778887777755 4557778888888888877666666677777777777763
No 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=1.3e-26 Score=275.42 Aligned_cols=220 Identities=13% Similarity=0.160 Sum_probs=173.0
Q ss_pred hhccCChHHHHHHHHHHHhc-CCC----Cc-----ccCCccchHHHHHhh---CCCeEEEEEeCCCCHHHHHHHhhccCC
Q 039311 8 SEKSGGLAHLRQILLSAILD-DGN----VS-----IGCPSIGLNFRSKRL---SRKKVLIVFDDVSTSEQMEFLIGNQGW 74 (909)
Q Consensus 8 s~~~~~~~~l~~~ll~~i~~-~~~----~~-----~~~~~~~~~~i~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~ 74 (909)
++. ++...+.+.|+..+.. ... .+ ..+.+.+...+++.| .+||+||||||||+.++|+.+.
T Consensus 190 s~~-~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----- 263 (1221)
T 1vt4_I 190 KNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----- 263 (1221)
T ss_dssp CCS-SSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----
T ss_pred CCC-CCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----
Confidence 344 5666777776664321 000 00 112234456677755 7899999999999999998752
Q ss_pred CCCCCEEEEEeCCchhhhhcCCCcEEECC------CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 039311 75 LMQGSRLIITARDKQVLKNCGVDTIYEVK------ELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 75 ~~~gSrIivTTR~~~v~~~~~~~~~y~l~------~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
+|||||||||++.++..++...+|+|+ +|+.+|||+||+++ |+.. ..+++.+| |+|+||||++
T Consensus 264 --pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-----~eeL~~eI---CgGLPLALkL 332 (1221)
T 1vt4_I 264 --LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-----PQDLPREV---LTTNPRRLSI 332 (1221)
T ss_dssp --SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-----TTTHHHHH---CCCCHHHHHH
T ss_pred --CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-----HHHHHHHH---hCCCHHHHHH
Confidence 799999999999999766444567777 99999999999998 4432 23444554 9999999999
Q ss_pred HhHhhcCC--CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhh-hhhheeeeeccCCC--CHHHHHHHHHhcCC-Ccc
Q 039311 149 LGRFLCGR--RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEE-QNLFLDIASFFKGE--DKDCVIKFLDGCGF-SAE 222 (909)
Q Consensus 149 lg~~L~~~--~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~-k~cfl~~a~f~~~~--~~~~li~~w~~~g~-~~~ 222 (909)
+|+.|+++ +.++|+.. ....+..+|++||+.||+++ |.||+|||+||.++ +.+.++.+|+++|. .++
T Consensus 333 aGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe 405 (1221)
T 1vt4_I 333 IAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405 (1221)
T ss_dssp HHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHH
T ss_pred HHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHH
Confidence 99999987 68899764 35679999999999999999 99999999999987 68889999999874 366
Q ss_pred cchhHhhhccccEEe--CCeEEehHHHHHHH
Q 039311 223 IGISVLVDKCLMVIL--NNKIMMHDLLQEMG 251 (909)
Q Consensus 223 ~~i~~L~~~~li~~~--~~~~~mhdll~e~~ 251 (909)
.++++|+++|||+.. .++++|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 789999999999986 46799999998855
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-24 Score=257.03 Aligned_cols=301 Identities=16% Similarity=0.159 Sum_probs=165.8
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccccc-cccCCC
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWKG-VQRLVN 386 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~~-~~~L~~ 386 (909)
+.+++.|++.++.+...+.. .+. +++|++|++++|.+..+|. .+ .+.+|++|+|++|.+..++.. ++.+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-----HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHH-----HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 45667777665543221111 011 4567777777777666654 33 566777777777776666543 466777
Q ss_pred CCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 387 LKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 387 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
|++|+|++|.+....+. ++.+++|++|++++|......|..++.+++|++|++++|. ++.++ ...+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC-GGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC-hhhhhhhhhhhcccC
Confidence 77777777665543333 4667777777777766555555566667777777776643 44433 123666666766665
Q ss_pred CCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCccee
Q 039311 466 SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR 545 (909)
Q Consensus 466 ~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~ 545 (909)
... .++ ...+|+.|++++|.+..+|..+. ++|+.|+|++|.... +..++.+++|+.|++. +|.+.
T Consensus 203 ~l~-~l~-~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls---------~N~l~ 267 (597)
T 3oja_B 203 LLS-TLA-IPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLS---------YNELE 267 (597)
T ss_dssp CCS-EEE-CCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECC---------SSCCC
T ss_pred ccc-ccc-CCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECC---------CCccC
Confidence 322 221 22356666666666665554432 466666666664433 2345555555555552 33333
Q ss_pred ec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhh
Q 039311 546 EV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 546 ~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i 624 (909)
.+ |..++.+++|+.|++++|.... .......+++|+.|+|++|.+..+|..++.+++|+.|+|++|.++.+| +
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~ 341 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--L 341 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--C
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--h
Confidence 32 4455555555555555522211 122233455555555555555555555555555555555555555544 4
Q ss_pred ccCCCCCEEeecCCC
Q 039311 625 IQLSHLFSLGISHCE 639 (909)
Q Consensus 625 ~~l~~L~~L~L~~c~ 639 (909)
..+++|+.|+|++|+
T Consensus 342 ~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 342 STHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhcCCCCEEEeeCCC
Confidence 445555555555553
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=248.51 Aligned_cols=288 Identities=19% Similarity=0.198 Sum_probs=200.3
Q ss_pred CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcCCC-CCccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLN 414 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 414 (909)
+..+++|++++|.++.++. .| .+.+|++|+|++|.+..+ |..+.++++|++|+|++|.+....+. +.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4567788888888777753 34 677888888888888776 56677888888888888775544443 67788888888
Q ss_pred cccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCc----cccCcceeeccccCcc
Q 039311 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQ 489 (909)
Q Consensus 415 L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~i~ 489 (909)
+++|......+..++.+++|++|++++|......+..+ ++++|+.|++++|... .++. ...+|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCc
Confidence 88877666667777888888888888754333223333 4778888888876433 3332 3456777778877777
Q ss_pred ccCc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCcccc
Q 039311 490 EFPS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMC 567 (909)
Q Consensus 490 ~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 567 (909)
.++. .+..+++|+.|++++|.....+|.......+|+.|++ +++.+..+|. .+..+++|+.|++++|.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI---------THCNLTAVPYLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE---------ESSCCCSCCHHHHTTCTTCCEEECCSSC-
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC---------cCCcccccCHHHhcCccccCeeECCCCc-
Confidence 6654 5777888888888888777777776666666666665 4455666663 46777788888887733
Q ss_pred ccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 568 HEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+.......+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 260 --l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 260 --ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp --CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred --CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 2222333456677888888888877764 56777788888888888887776653 4667778888877764
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-23 Score=260.67 Aligned_cols=326 Identities=17% Similarity=0.139 Sum_probs=239.0
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCC-CCCcc-CCCC-CCCCeeEEEcCCCCcccc-ccccccC
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGC-PLKSL-SSKI-PPENLVSLEMPHSSIKQL-WKGVQRL 384 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~-~l~~l-p~~~-~~~~L~~L~L~~~~i~~l-p~~~~~L 384 (909)
..++|+.|++++|.+... .+..+. +.+|++|++++| .+..+ |..+ .+.+|++|+|++|.+..+ |..+.++
T Consensus 22 lp~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 457899999998876432 233445 899999999999 45666 5556 789999999999999987 7789999
Q ss_pred CCCCEEecCCCcCCCcCCC---CCccccccccccccccccceec-ccccCCCcccEeccccccCccccCccc-cC--CcC
Q 039311 385 VNLKHINLSHSEHLTKIPD---LSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI-HL--GSL 457 (909)
Q Consensus 385 ~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l--~~L 457 (909)
++|++|+|++|.+...+|. +..+++|++|++++|......+ ..++.+++|++|++++|......+..+ .+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 9999999999988775553 8899999999999988765544 578999999999999976444445544 34 899
Q ss_pred cEEEccCCCCCcccCcccc---------CcceeeccccCcc-ccCccccc------------------------------
Q 039311 458 KKLILSGCSNLMSFPELSC---------NIEELSLDGTAIQ-EFPSSIER------------------------------ 497 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~~~---------~L~~L~L~~~~i~-~lp~~i~~------------------------------ 497 (909)
+.|++++|......|.... .|+.|++++|.+. .+|..+..
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 9999999877666554322 3889999998665 33332221
Q ss_pred --------CCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCccccc
Q 039311 498 --------LSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 498 --------l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~ 568 (909)
.++|+.|++++|......|..++.+++|+.|++ ++|.+..+ |..+..+++|+.|++++|.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---------~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-- 325 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL---------AYNKINKIADEAFYGLDNLQVLNLSYNL-- 325 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE---------ESCCCCEECTTTTTTCSSCCEEEEESCC--
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC---------CCCcCCCCChHHhcCCCCCCEEECCCCC--
Confidence 257888888888777666777888888888877 34455544 4467788888888888733
Q ss_pred cccccccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC
Q 039311 569 EQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647 (909)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 647 (909)
+.......+..+++|+.|++++|.+..++. .+..+++|+.|+|++|.++.++. +++|+.|++++| .+..+|..
T Consensus 326 -l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~ 399 (844)
T 3j0a_A 326 -LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKI 399 (844)
T ss_dssp -CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCC
T ss_pred -CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCC-Cccccccc
Confidence 333333456678888888888888876543 57778888888888888876653 677777877775 34566655
Q ss_pred CCCcCceecc
Q 039311 648 PCDLSDIEAH 657 (909)
Q Consensus 648 ~~sL~~L~i~ 657 (909)
..+++.|++.
T Consensus 400 ~~~l~~L~ls 409 (844)
T 3j0a_A 400 NLTANLIHLS 409 (844)
T ss_dssp CTTCCEEECC
T ss_pred ccccceeecc
Confidence 4444444443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=9.3e-24 Score=238.29 Aligned_cols=302 Identities=16% Similarity=0.158 Sum_probs=237.6
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccccc-ccccCC
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWK-GVQRLV 385 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~-~~~~L~ 385 (909)
.+.+++.|++.++.+...+..+ +. +++|++|+++++.+..++. .+ .+.+|++|++++|.+..++. .+..++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~-----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHH-----HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhH-----hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 4678999999876543322111 22 6789999999999988876 44 78899999999999998864 478899
Q ss_pred CCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 386 NLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+|++|++++|.+....+. +..+++|++|++++|......+..++.+++|++|++++|. ++.++ ...+++|+.|++++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSY 195 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC-GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc-cccccccceeeccc
Confidence 999999999986644444 6889999999999987766667778999999999999864 55543 23588999999998
Q ss_pred CCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 465 CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 465 c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
|.. ..++ ...++++|++++|.+..+|..+ .++|+.|++++|.... . ..++.+++|+.|++ +++.+
T Consensus 196 n~l-~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L---------s~n~l 260 (390)
T 3o6n_A 196 NLL-STLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD-T-AWLLNYPGLVEVDL---------SYNEL 260 (390)
T ss_dssp SCC-SEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCC-C-GGGGGCTTCSEEEC---------CSSCC
T ss_pred ccc-cccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcc-c-HHHcCCCCccEEEC---------CCCcC
Confidence 643 3332 3357899999999999887654 5789999999986554 3 46788888888887 44555
Q ss_pred eec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh
Q 039311 545 REV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623 (909)
Q Consensus 545 ~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 623 (909)
..+ |..+..+++|+.|++++|.... .......+++|+.|+|++|.+..+|..+..+++|+.|++++|.++.+|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCE----EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred CCcChhHccccccCCEEECCCCcCcc----cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--
Confidence 554 6778899999999999844322 233356689999999999999999999999999999999999999887
Q ss_pred hccCCCCCEEeecCCC
Q 039311 624 IIQLSHLFSLGISHCE 639 (909)
Q Consensus 624 i~~l~~L~~L~L~~c~ 639 (909)
+..+++|+.|++++|+
T Consensus 335 ~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred chhhccCCEEEcCCCC
Confidence 7789999999999985
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.6e-23 Score=240.50 Aligned_cols=271 Identities=21% Similarity=0.234 Sum_probs=165.0
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
++|++|++++|.++.+|..+ .+|++|++++|.+..++.. .++|++|++++|.+.. +|+++.+++|++|++++|.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~--~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCcccccc--CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc
Confidence 45666666666666666432 5666666666666655432 1466666666665443 5566666666666666654
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
.. .+|..+ .+|++|++++| .++.+|...++++|+.|++++|.. ..+|....+|++|++++|.+..+|. ++.++
T Consensus 165 l~-~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~ 237 (454)
T 1jl5_A 165 LK-KLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNNILEELPE-LQNLP 237 (454)
T ss_dssp CS-CCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSSCCSSCCC-CTTCT
T ss_pred Cc-ccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC-CcCCCCcCcccEEECcCCcCCcccc-cCCCC
Confidence 32 344332 36666666664 344555433566666666666543 3355555566666666666666663 66666
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeeccc-----------ccccccccCcceeecCccccccCCCCeeecCccccc
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-----------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~-----------~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 568 (909)
+|+.|++++|.. ..+|.. +++|+.|++.. +++.|++++|.+..+|.. .++|+.|++++|...
T Consensus 238 ~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 238 FLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp TCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcC-Cccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCC
Confidence 666666666643 234432 34555555532 244555566666655432 256777777763322
Q ss_pred cccccccCccCCC-CCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 569 EQMGLLLPISFGL-TSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 569 ~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
. +..+ ++|+.|++++|.+..+|.. +++|+.|++++|+++.+|. .+++|+.|++++|+ +..+|
T Consensus 311 ~--------i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~ 373 (454)
T 1jl5_A 311 S--------LCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFP 373 (454)
T ss_dssp E--------ECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred c--------ccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCC
Confidence 1 1122 5888888888888877764 5788888888888888886 47888888888864 44433
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.6e-23 Score=243.05 Aligned_cols=306 Identities=18% Similarity=0.166 Sum_probs=242.5
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
-+.++.++..++.+|..+. .++++|+|++|.+..++ ..+.++++|++|+|++|.+....|. +.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3567788888999998774 68999999999999885 6789999999999999987777675 9999999999999987
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCc---cccCcceeeccccCccccCcc-
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGTAIQEFPSS- 494 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~lp~~- 494 (909)
.....+..++.+++|++|++++|......+..+ ++++|+.|++++|......+. ...+|++|++++|.+..+|..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 554334467899999999999976544445555 599999999999866544443 345799999999999988764
Q ss_pred cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
+.++++|+.|++++|......+..+..+++|+.|++..+ .....+|.......+|+.|++++|. +....
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~--------~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~ 240 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW--------PYLDTMTPNCLYGLNLTSLSITHCN---LTAVP 240 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC--------TTCCEECTTTTTTCCCSEEEEESSC---CCSCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC--------ccccccCcccccCccccEEECcCCc---ccccC
Confidence 889999999999999877766677899999999988543 2345667666667799999999843 33222
Q ss_pred cCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCcccCC----CC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLHSLPE----LP 648 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~ 648 (909)
...+..+++|+.|+|++|.+..++ ..+..+++|+.|+|++|++..+ |..+..+++|+.|+|++| .++.+|. ..
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 319 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSV 319 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCC
Confidence 224677899999999999998754 4678999999999999999965 668889999999999997 5666664 23
Q ss_pred CCcCceecccCc
Q 039311 649 CDLSDIEAHCCS 660 (909)
Q Consensus 649 ~sL~~L~i~~C~ 660 (909)
++|+.|++.+++
T Consensus 320 ~~L~~L~l~~N~ 331 (477)
T 2id5_A 320 GNLETLILDSNP 331 (477)
T ss_dssp GGCCEEECCSSC
T ss_pred cccCEEEccCCC
Confidence 456666665543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-23 Score=249.23 Aligned_cols=290 Identities=14% Similarity=0.137 Sum_probs=242.4
Q ss_pred EeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccc
Q 039311 301 IHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQL 377 (909)
Q Consensus 301 ~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l 377 (909)
..++...|.++++|+.|++.+|.+.+. .+..+. +.+|++|++++|.+..+|... .+.+|++|+|++|.+..+
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 345567789999999999998875432 222444 889999999999999998754 789999999999999999
Q ss_pred ccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCC
Q 039311 378 WKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLG 455 (909)
Q Consensus 378 p~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 455 (909)
|.. +..+++|++|+|++|.+....|. ++.+++|++|++++|.... + .++.+++|+.|++++|. +..++ ...
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~-l~~l~---~~~ 211 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL-LSTLA---IPI 211 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSC-CSEEE---CCT
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCc-ccccc---CCc
Confidence 977 48999999999999998877775 9999999999999987543 3 36788999999999964 44433 357
Q ss_pred cCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccc
Q 039311 456 SLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALK 535 (909)
Q Consensus 456 ~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~ 535 (909)
+|+.|++++|......+....+|+.|++++|.+... .+++.+++|+.|+|++|...+..|..++.+++|+.|++
T Consensus 212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L----- 285 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI----- 285 (597)
T ss_dssp TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC-----
T ss_pred hhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC-----
Confidence 899999999876554445567899999999999985 67999999999999999888888999999999999988
Q ss_pred cccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCC
Q 039311 536 ELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKN 615 (909)
Q Consensus 536 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 615 (909)
++|.+..+|..+..+++|+.|++++|... ..++.+..+++|+.|+|++|.+..++ +..+++|+.|+|++|
T Consensus 286 ----s~N~l~~l~~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 286 ----SNNRLVALNLYGQPIPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp ----TTSCCCEEECSSSCCTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred ----CCCCCCCCCcccccCCCCcEEECCCCCCC----ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 55677788888888999999999984433 23344667899999999999999875 788999999999999
Q ss_pred CCe
Q 039311 616 NFE 618 (909)
Q Consensus 616 ~l~ 618 (909)
.+.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 988
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.2e-23 Score=238.13 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=114.6
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCC
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
.+.++++|+.|++++|.+.+.+ ++. +++|++|++++|.++.+| ...+.+|++|++++|.+..++ ++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-------~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-------GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-------TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred ChhHcCCCCEEEccCCCcccCh-------hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCC
Confidence 4566777777777766544321 233 567777777777777665 335667777777777777664 66677
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++|++++|.+.. +| ++.+++|++|++++|.... + .++.+++|++|++++|..+..++ ...+++|+.|++++|
T Consensus 107 ~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCC
Confidence 77777777765443 33 6666777777777665433 3 25666666666666665555542 224566666666654
Q ss_pred CCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 466 SNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 466 ~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
...+ +| ....+|+.|++++|.++.++ ++.+++|+.|++++|...+ +| ++.+++|+.|++
T Consensus 181 ~l~~-l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 181 KITE-LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp CCCC-CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred ccce-eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 3222 22 12234555555555555442 4455555555555543322 33 444444444444
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.1e-23 Score=237.24 Aligned_cols=288 Identities=19% Similarity=0.180 Sum_probs=171.9
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCC
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
.|..+++|+.|++++|.+.+. . +. +++|++|++++|.++.+| ...+.+|++|++++|.+..+| ++.++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-------~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-------D-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-------C-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred hhcccCCCCEEEccCCcCCeE-------c-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 567777777777777665432 1 23 667777777777777765 336677777777777777765 67777
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++|++++|.+.. + +++.+++|++|++++|.....+ .++.+++|++|++++| .++.+| ...+++|+.|++++|
T Consensus 128 ~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 128 LLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSS
T ss_pred cCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCC
Confidence 77777777776544 3 3677777777777777655555 4667777777777775 355565 335777777777776
Q ss_pred CCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc-ccccccccCcc-
Q 039311 466 SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIA- 543 (909)
Q Consensus 466 ~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~-~l~~L~l~~~~- 543 (909)
.....--....+|+.|++++|.+..+| ++.+++|+.|++++|...+ +| ++.+++|+.|++.. +++.++++++.
T Consensus 202 ~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 202 NITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp CCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred cCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 543321123456777777777777776 6777777777777774433 33 45566666666532 12233333222
Q ss_pred eeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh
Q 039311 544 IREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623 (909)
Q Consensus 544 ~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 623 (909)
.+.+| .+.+++|+.|++++ | ..+..+..+.+.+..+ .+.++++|+.|++++|+++.++
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~--n--------------~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~-- 334 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTH--N--------------TQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD-- 334 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTT--C--------------TTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC--
T ss_pred CCccc--ccccccCCEEECCC--C--------------cccceeccCCCcceEe--chhhcccCCEEECCCCcccccc--
Confidence 11111 12223333333322 0 0112222222222222 2456677777777777777664
Q ss_pred hccCCCCCEEeecCC
Q 039311 624 IIQLSHLFSLGISHC 638 (909)
Q Consensus 624 i~~l~~L~~L~L~~c 638 (909)
+..+++|+.|++++|
T Consensus 335 l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCTTCSEEECCSS
T ss_pred cccCCcCcEEECCCC
Confidence 667777777777775
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.6e-22 Score=243.15 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=100.5
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPEN 363 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~~ 363 (909)
.++.+.+..+.+ ..+.+.+|.++++|++|++++|.+.... +..+. +++|++|++++|.++.+|.. | .+.+
T Consensus 53 ~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-----~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcC-----hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 445444444443 4456778999999999999988654321 23344 78899999999999999864 4 7889
Q ss_pred eeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCc-CCC-CCccccccccccccccccceeccccc
Q 039311 364 LVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTK-IPD-LSLATNLESLNFQGCTCLLETHSSIQ 429 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~ 429 (909)
|++|++++|+++.++. .++++++|++|++++|.+... .|. ++.+++|++|++++|......+..++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 9999999999998885 478899999999999886543 444 77889999999998865444444443
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=6.6e-23 Score=235.30 Aligned_cols=329 Identities=19% Similarity=0.179 Sum_probs=212.9
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CC-------------CccEEEeeCCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-ST-------------ELRYLQWHGCPL 352 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~-------------~Lr~L~l~~~~l 352 (909)
.++.+.+..+.+..+ +.++.++++|+.|++++|.+.+ ..+..+. +. .+++|+++++.+
T Consensus 12 ~L~~L~l~~n~l~~i---P~~i~~L~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEM---PVEAENVKSKTEYYNAWSEWER-----NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHH-----TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cchhhhcccCchhhC---ChhHhcccchhhhhccCCcccc-----cCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 344444444444332 3568999999999998765432 2233333 33 359999999999
Q ss_pred CccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCC
Q 039311 353 KSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLN 432 (909)
Q Consensus 353 ~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~ 432 (909)
+.+|.. +.+|++|++++|.++.+|.. +.+|++|++++|.+. .+|.+. ++|++|++++|... .+| .++.++
T Consensus 84 ~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~~--~~L~~L~L~~n~l~-~lp-~~~~l~ 153 (454)
T 1jl5_A 84 SSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDLP--PLLEYLGVSNNQLE-KLP-ELQNSS 153 (454)
T ss_dssp SCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSCC--TTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred ccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCCC--CCCCEEECcCCCCC-CCc-ccCCCC
Confidence 999883 47999999999999999864 489999999998754 444432 79999999998765 477 699999
Q ss_pred cccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc--cccCcceeeccccCccccCcccccCCCCCEEeccCCC
Q 039311 433 KLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE--LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 433 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 510 (909)
+|++|++++|. ++.+|.. ..+|++|++++|.. ..+|. ...+|+.|++++|.+..+|... ++|+.|++++|.
T Consensus 154 ~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l-~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 154 FLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQL-EELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp TCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC
T ss_pred CCCEEECCCCc-CcccCCC--cccccEEECcCCcC-CcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc
Confidence 99999999974 6667754 46999999999854 44664 2457899999999999888754 589999999995
Q ss_pred CCCcCcccccCCCCCCeeeccc-----------ccccccccCcceeecCccccccCCCCeeecCccccccccccccCccC
Q 039311 511 RLEGLPSKICKLKSLERLNLAE-----------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579 (909)
Q Consensus 511 ~l~~lp~~l~~L~~L~~L~l~~-----------~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 579 (909)
.. .+|. ++.+++|+.|++.. +++.|++++|.+..+|.. +++|+.|++++|....+ +.
T Consensus 227 l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-----~~-- 294 (454)
T 1jl5_A 227 LE-ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-----SE-- 294 (454)
T ss_dssp CS-SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-----SC--
T ss_pred CC-cccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-----cC--
Confidence 54 7884 89999999999843 244445555555444432 24555555554221111 11
Q ss_pred CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCCCCCcCceecccC
Q 039311 580 GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCC 659 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C 659 (909)
..++|+.|++++|.+..++.. .++|+.|++++|+++.+|.. +++|+.|++++| .++.+|..+++|+.|++.++
T Consensus 295 ~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N 367 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYN 367 (454)
T ss_dssp CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCC
Confidence 124556666666555543321 13666666666666666543 466666666665 45566666666666666665
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=4.4e-22 Score=219.34 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=120.6
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
.++.++++++.++.+|..+. .+|++|++++|.+..++ ..+.++++|++|++++|.+....|. ++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 57778888888888877663 57888888888887775 4677888888888888876655554 777888888888876
Q ss_pred cccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCc--ccCcccc--CcceeeccccCccccC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLM--SFPELSC--NIEELSLDGTAIQEFP 492 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~--~lp~~~~--~L~~L~L~~~~i~~lp 492 (909)
.. ..+|..+. ++|++|++++|. ++.++.. + ++++|+.|++++|.... ..+..+. +|+.|++++|.+..+|
T Consensus 113 ~l-~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HL-VEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CC-CSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cC-CccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 53 35666555 678888888754 4555543 3 57778888877765421 2222221 5666666667666666
Q ss_pred cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
..+. ++|+.|++++|......|..+..+++|+.|++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 6543 56666666666554444455555555555554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.2e-21 Score=215.53 Aligned_cols=257 Identities=16% Similarity=0.171 Sum_probs=152.6
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
++++++++++.++.+|..+. .+|++|++++|.++.++. .+.++++|++|++++|.+....|. +..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 57788888888888887664 578888888888888775 577888888888888876666554 778888888888876
Q ss_pred cccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCc--ccCc---cccCcceeeccccCcccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLM--SFPE---LSCNIEELSLDGTAIQEF 491 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~--~lp~---~~~~L~~L~L~~~~i~~l 491 (909)
.. ..+|..+. ++|++|++++|. ++.++.. + ++++|+.|++++|.... ..+. ...+|++|++++|.+..+
T Consensus 111 ~l-~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 QL-KELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CC-SBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred cC-CccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 53 45665554 678888887754 4444432 2 47777777777764421 1111 123444555555555544
Q ss_pred CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccc
Q 039311 492 PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571 (909)
Q Consensus 492 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 571 (909)
|..+. ++|+.|++++|......|..+ ..+++|+.|++++|. +.
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~--------------------------------~~l~~L~~L~Ls~n~---l~ 229 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASL--------------------------------KGLNNLAKLGLSFNS---IS 229 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGG--------------------------------TTCTTCCEEECCSSC---CC
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHh--------------------------------cCCCCCCEEECCCCc---Cc
Confidence 44332 445555555544333333344 444444444444421 11
Q ss_pred ccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhc-------cCCCCCEEeecCCC
Q 039311 572 GLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII-------QLSHLFSLGISHCE 639 (909)
Q Consensus 572 ~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~-------~l~~L~~L~L~~c~ 639 (909)
+.....+..+++|+.|+|++|.+..+|.++..+++|+.|++++|+++.+|.... ..+.|+.|++++++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 111123444556666666666666666666666666666666666665553221 23556666666655
No 45
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=249.64 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=172.8
Q ss_pred CCccchHHHHHhhCC--CeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhcCCCcEEEC---CCCCHHH
Q 039311 35 CPSIGLNFRSKRLSR--KKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEV---KELFDDD 109 (909)
Q Consensus 35 ~~~~~~~~i~~~L~~--kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~y~l---~~L~~~e 109 (909)
+.+.....+++.|.+ +++||||||||+..+++. +++|++||||||++.++..++ ...|++ ++|+.+|
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~e 290 (591)
T 1z6t_A 219 NIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEK 290 (591)
T ss_dssp SHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHH
T ss_pred CHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHH
Confidence 344566777777765 799999999999887764 368999999999999988764 445665 5899999
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCC-----------cchhh
Q 039311 110 ARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPH-----------VDIQK 178 (909)
Q Consensus 110 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~-----------~~i~~ 178 (909)
|++||...++.. .....+.+++|+++|+|+||||+.+|+.|+++. .+|+..++.+..... ..+..
T Consensus 291 a~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 366 (591)
T 1z6t_A 291 GLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366 (591)
T ss_dssp HHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHH
T ss_pred HHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHH
Confidence 999999999752 233456789999999999999999999998764 479999999875432 35889
Q ss_pred hhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcccchhHhhhccccEEeC----CeEEehHHHHHHHH
Q 039311 179 VLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAEIGISVLVDKCLMVILN----NKIMMHDLLQEMGR 252 (909)
Q Consensus 179 ~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~~~i~~L~~~~li~~~~----~~~~mhdll~e~~~ 252 (909)
++..||+.||++.|.||+++|+||.++ +.+.+..+|.+.+..+..+++.|++++||+... ..+.||++++++++
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHH
Confidence 999999999999999999999999876 778889999876555677899999999998762 26999999999988
Q ss_pred HH
Q 039311 253 EI 254 (909)
Q Consensus 253 ~i 254 (909)
+.
T Consensus 447 ~~ 448 (591)
T 1z6t_A 447 EK 448 (591)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.1e-22 Score=222.09 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=138.2
Q ss_pred CeeEEEcCCCCcc---ccccccccCCCCCEEecCC-CcCCCcCCC-CCccccccccccccccccceecccccCCCcccEe
Q 039311 363 NLVSLEMPHSSIK---QLWKGVQRLVNLKHINLSH-SEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVL 437 (909)
Q Consensus 363 ~L~~L~L~~~~i~---~lp~~~~~L~~L~~L~Ls~-~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L 437 (909)
+++.|+++++.+. .+|..+.++++|++|++++ |.+...+|. ++.+++|++|++++|.....+|..++.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 5666666666665 4667777777777777774 665556664 7777777777777776666677777777777777
Q ss_pred ccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC-CCCEEeccCCCCCCcC
Q 039311 438 NLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS-SLILLNLGNCLRLEGL 515 (909)
Q Consensus 438 ~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~c~~l~~l 515 (909)
++++|.....+|..+ .+++|++|++++|...+ .+|..++.++ +|+.|++++|...+.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------AIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------ECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------cCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 777755333455444 35566666555543322 3344444444 5555555555444444
Q ss_pred cccccCCCCCCeeecccccccccccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGI 594 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l 594 (909)
|..++.++ |+.|++ +++.+. ..|..+..+++|+.|++++|.. ...++.+..+++|++|+|++|.+
T Consensus 191 ~~~~~~l~-L~~L~L---------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 191 PPTFANLN-LAFVDL---------SRNMLEGDASVLFGSDKNTQKIHLAKNSL----AFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CGGGGGCC-CSEEEC---------CSSEEEECCGGGCCTTSCCSEEECCSSEE----CCBGGGCCCCTTCCEEECCSSCC
T ss_pred ChHHhCCc-ccEEEC---------cCCcccCcCCHHHhcCCCCCEEECCCCce----eeecCcccccCCCCEEECcCCcc
Confidence 44444443 444433 222222 2233344444444444444211 11222344456666666666666
Q ss_pred C-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCc
Q 039311 595 I-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 595 ~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~ 642 (909)
. .+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+.
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 6 46666666666666666666666 45543 556666666666665444
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=2.3e-21 Score=229.32 Aligned_cols=261 Identities=21% Similarity=0.226 Sum_probs=181.6
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
.++.|+++++.++.+|..+. .+|++|++++|.++.+|. .+++|++|+|++|.+ +.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSNP- 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSCC-
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCCc-
Confidence 35666666777777776655 577777777777777666 456777777777763 34554 56777777777764
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
+..+|. .+++|+.|++++|. ++.+|.. +++|++|++++| .+..+|..+.+|+.|++++|.++.+| ..+++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCC
Confidence 334444 55677777777753 6666653 477888888876 44566777778888888888888887 45678
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCC
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG 580 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 580 (909)
|+.|++++|.. ..+|.. +++|+.|++ ++|.+..+|.. +++|+.|++++|... . ++ ..
T Consensus 183 L~~L~Ls~N~l-~~l~~~---~~~L~~L~L---------~~N~l~~l~~~---~~~L~~L~Ls~N~L~---~--lp--~~ 239 (622)
T 3g06_A 183 LQELSVSDNQL-ASLPTL---PSELYKLWA---------YNNRLTSLPAL---PSGLKELIVSGNRLT---S--LP--VL 239 (622)
T ss_dssp CCEEECCSSCC-SCCCCC---CTTCCEEEC---------CSSCCSSCCCC---CTTCCEEECCSSCCS---C--CC--CC
T ss_pred CcEEECCCCCC-CCCCCc---cchhhEEEC---------cCCcccccCCC---CCCCCEEEccCCccC---c--CC--CC
Confidence 88888888753 345542 355555554 55666666653 477888888874322 2 22 44
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
+++|+.|+|++|.+..+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|+.-...|
T Consensus 240 l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 6889999999998888877 6788999999999988888888889999999999887554443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.5e-21 Score=213.17 Aligned_cols=234 Identities=18% Similarity=0.244 Sum_probs=178.8
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccc-ccccccCCCC
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQL-WKGVQRLVNL 387 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L 387 (909)
..+++.+++.++.+...+ ..+ ++.|++|++++|.++.++. .+ .+.+|++|++++|.+..+ |..+..+++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp------~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVP------KDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EEETTEEECTTSCCCSCC------CSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred cCCCeEEEecCCCccccC------ccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 346788888765443222 111 4689999999999999987 34 789999999999999988 7789999999
Q ss_pred CEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCcc--ccCccc-cCCcCcEEEcc
Q 039311 388 KHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT--SLSTSI-HLGSLKKLILS 463 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~Ls 463 (909)
++|++++|.+. .+|. +. ++|++|++++|......+..++.+++|++|++++|.... ..+..+ ++++|+.|+++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 99999999855 4554 43 799999999988766666678999999999999975422 334444 59999999999
Q ss_pred CCCCCcccCc-cccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccC
Q 039311 464 GCSNLMSFPE-LSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEG 541 (909)
Q Consensus 464 ~c~~l~~lp~-~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~ 541 (909)
+|... .+|. ...+|++|++++|.+..+ |..+..+++|+.|++++|......+..+..+++|+.|++ ++
T Consensus 180 ~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---------~~ 249 (330)
T 1xku_A 180 DTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL---------NN 249 (330)
T ss_dssp SSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC---------CS
T ss_pred CCccc-cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC---------CC
Confidence 97644 4554 347899999999999977 577999999999999999766655556777777777776 44
Q ss_pred cceeecCccccccCCCCeeecCc
Q 039311 542 IAIREVPSSIACLKNLGRLSFES 564 (909)
Q Consensus 542 ~~~~~lp~~i~~l~~L~~L~l~~ 564 (909)
|.+..+|..+..+++|+.|++++
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCS
T ss_pred CcCccCChhhccCCCcCEEECCC
Confidence 55556666666556666665555
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.4e-21 Score=211.37 Aligned_cols=234 Identities=19% Similarity=0.209 Sum_probs=180.4
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccc-ccccccCCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQL-WKGVQRLVNLK 388 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~ 388 (909)
.+++.+++.++.+...+ ..+ .+.|++|++++|.+..++. .+ .+.+|++|++++|.+..+ |..+..+++|+
T Consensus 33 c~l~~l~~~~~~l~~ip------~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVP------KEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCCSSCC------SCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred ccCCEEECCCCCccccC------CCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 46888888876543322 111 4689999999999999965 44 789999999999999988 67899999999
Q ss_pred EEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCc--cccCccccCCcCcEEEccCC
Q 039311 389 HINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSL--TSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 389 ~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l--~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++++|.+. .+|. +. ++|++|++++|......+..++.+++|++|++++|..- ...+..+...+|+.|++++|
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC
Confidence 9999999865 4554 44 89999999998766544456899999999999997542 13344443229999999997
Q ss_pred CCCcccCc-cccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcc
Q 039311 466 SNLMSFPE-LSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIA 543 (909)
Q Consensus 466 ~~l~~lp~-~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~ 543 (909)
... .+|. ...+|++|++++|.+..++ ..+..+++|+.|++++|......+..++.+++|+.|++ ++|.
T Consensus 183 ~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---------~~N~ 252 (332)
T 2ft3_A 183 KLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL---------DNNK 252 (332)
T ss_dssp BCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC---------CSSC
T ss_pred CCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC---------CCCc
Confidence 644 4554 3468999999999999876 67999999999999999776666667888888888877 4556
Q ss_pred eeecCccccccCCCCeeecCcc
Q 039311 544 IREVPSSIACLKNLGRLSFESF 565 (909)
Q Consensus 544 ~~~lp~~i~~l~~L~~L~l~~~ 565 (909)
+..+|..+..+++|+.|++++|
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSS
T ss_pred CeecChhhhcCccCCEEECCCC
Confidence 6677776666666666666653
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.3e-21 Score=213.55 Aligned_cols=248 Identities=17% Similarity=0.168 Sum_probs=198.8
Q ss_pred CCCCEEecCCCcCCC--cCCC-CCcccccccccccc-ccccceecccccCCCcccEeccccccCccccCccc-cCCcCcE
Q 039311 385 VNLKHINLSHSEHLT--KIPD-LSLATNLESLNFQG-CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKK 459 (909)
Q Consensus 385 ~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~-c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 459 (909)
.+++.|+|+++.+.+ .+|. +.++++|++|++++ |.....+|..++.+++|++|++++|.....+|..+ ++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888776 5664 88888888888885 66666778888888888888888866444666655 4666666
Q ss_pred EEccCCCCCcccCccccCcceeeccccCcc-ccCcccccCCCCCEEeccCCCCCCcCcccccCCC-CCCeeecccccccc
Q 039311 460 LILSGCSNLMSFPELSCNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLK-SLERLNLAEALKEL 537 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~-~L~~L~l~~~l~~L 537 (909)
|++++ |.+. .+|..++.+++|++|++++|...+.+|..++.++ +|+.|++
T Consensus 130 L~Ls~---------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L------- 181 (313)
T 1ogq_A 130 LDFSY---------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI------- 181 (313)
T ss_dssp EECCS---------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC-------
T ss_pred EeCCC---------------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC-------
Confidence 66665 5555 5788899999999999999988778999999998 8998887
Q ss_pred cccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCC
Q 039311 538 KAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 538 ~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~ 616 (909)
+++.+. .+|..+..++ |+.|++++| .+.+.....+..+++|+.|+|++|.+...+..+..+++|+.|+|++|+
T Consensus 182 --~~N~l~~~~~~~~~~l~-L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 182 --SRNRLTGKIPPTFANLN-LAFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp --CSSEEEEECCGGGGGCC-CSEEECCSS---EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred --cCCeeeccCChHHhCCc-ccEEECcCC---cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 455555 6788888887 999999984 333334445778999999999999999766678999999999999999
Q ss_pred Ce-ecchhhccCCCCCEEeecCCCCCcccCCC--CCCcCceecccCccccccc
Q 039311 617 FE-RIPESIIQLSHLFSLGISHCERLHSLPEL--PCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 617 l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~l~ 666 (909)
++ .+|..+..+++|+.|+|++|+.-..+|.. .++|+.|++.+++.|...|
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 99 89999999999999999999766688874 4577888888888776543
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2e-21 Score=213.46 Aligned_cols=226 Identities=27% Similarity=0.338 Sum_probs=121.1
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEecccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
+++.|+++++.+..+|..+.++++|++|+|++|.+. .+|. ++.+++|++|++++|... .+|..++.+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 444555555555555555555555666666555544 3443 555555555555555433 5555566666666666666
Q ss_pred ccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccC
Q 039311 442 CRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICK 521 (909)
Q Consensus 442 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~ 521 (909)
|..+..+|..+. ...+.+ . -..+.+|++|++++|.+..+|.+++.+++|+.|++++|... .+|.
T Consensus 160 n~~~~~~p~~~~-----~~~~~~-----~-~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~---- 223 (328)
T 4fcg_A 160 CPELTELPEPLA-----STDASG-----E-HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP---- 223 (328)
T ss_dssp ETTCCCCCSCSE-----EEC-CC-----C-EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCG----
T ss_pred CCCccccChhHh-----hccchh-----h-hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCch----
Confidence 555555554321 000000 0 00112334444444555555555666666666666555332 2333
Q ss_pred CCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC-Ccccc
Q 039311 522 LKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPEC 600 (909)
Q Consensus 522 L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~ 600 (909)
.++.+++|+.|++++| +..+..+..+..+++|+.|+|++|++. .+|..
T Consensus 224 ----------------------------~l~~l~~L~~L~Ls~n---~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 224 ----------------------------AIHHLPKLEELDLRGC---TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp ----------------------------GGGGCTTCCEEECTTC---TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred ----------------------------hhccCCCCCEEECcCC---cchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 3444444444444441 112222333555667777777776655 46777
Q ss_pred cCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecC
Q 039311 601 LGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 601 l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~ 637 (909)
++.+++|+.|+|++|++. .+|..+..+++|+.+++..
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 777777777777776655 7777777777777777765
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=218.14 Aligned_cols=270 Identities=18% Similarity=0.148 Sum_probs=181.9
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 417 (909)
.....++.+++.++.+|..+. .+|++|++++|.++.++. .+.++++|++|++++|.+....|. +..+++|++|++++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 344567888889999998765 489999999999998886 688999999999999987766665 88999999999999
Q ss_pred ccccceecccccCCCcccEeccccccCccccCc--cc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLST--SI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS 494 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~ 494 (909)
|......+..++.+++|++|++++| .++.+|. .+ ++++|++|++++|..+..++ |..
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~ 169 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------------RKD 169 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------TTT
T ss_pred CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-------------------HHH
Confidence 8655433334888999999999986 4667766 33 58888888888875544432 223
Q ss_pred cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcc-ccccCCCCeeecCcccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSS-IACLKNLGRLSFESFMCHEQMGL 573 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~ 573 (909)
++.+++|+.|++++|......|..++.+++|+.|++. ++.+..+|.. +..+++|+.|++++|........
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~---------~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH---------MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE---------CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC---------CCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 4444445555555544444444444444444444442 2223333332 22355566666655322222111
Q ss_pred ccCccCCCCCCCEEecCCCCCC-----CcccccCCCCCCcEEECCCCCCeecchhh-ccCCCCCEEeecCCC
Q 039311 574 LLPISFGLTSLTYLRLTDCGII-----ELPECLGQLSSRSILLLEKNNFERIPESI-IQLSHLFSLGISHCE 639 (909)
Q Consensus 574 ~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 639 (909)
.++.......++.++++++.+. .+|..+..+++|+.|++++|+++.+|..+ ..+++|+.|+|++|+
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 1222233567778888887776 36778888999999999999999888875 788899999998885
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.7e-21 Score=212.37 Aligned_cols=223 Identities=23% Similarity=0.356 Sum_probs=165.2
Q ss_pred CCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC-CCCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-DLSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 417 (909)
..++.|+++++.++.+|..+ .+.+|++|++++|.+..+|..++.+++|++|+|++|.+. .+| .++.+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 56777888888888888766 678888888888888888888888889999999888766 555 488888899999988
Q ss_pred ccccceecccccC---------CCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccC
Q 039311 418 CTCLLETHSSIQY---------LNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTA 487 (909)
Q Consensus 418 c~~l~~~p~~i~~---------L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~ 487 (909)
|.....+|..++. +++|++|++++|. ++.+|..+ ++++|++|+ +++|.
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~---------------------L~~N~ 217 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK---------------------IRNSP 217 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEE---------------------EESSC
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEE---------------------ccCCC
Confidence 8888888877654 6777777777653 44555444 355555554 44566
Q ss_pred ccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccc
Q 039311 488 IQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMC 567 (909)
Q Consensus 488 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 567 (909)
+..+|..++.+++|+.|++++|...+.+|..++.+++|+.|++..| ...+.+|.
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n--------~~~~~~p~------------------ 271 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--------SNLLTLPL------------------ 271 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC--------TTCCBCCT------------------
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC--------Cchhhcch------------------
Confidence 6778888999999999999999888888888888887777777432 11222333
Q ss_pred ccccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCeec
Q 039311 568 HEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFERI 620 (909)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~~l 620 (909)
.+..+++|+.|+|++|++. .+|.+++.+++|+.+.+..+.+..+
T Consensus 272 ---------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 272 ---------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp ---------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred ---------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 3445677777777777766 5888889999999998887655443
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=4.9e-20 Score=217.97 Aligned_cols=265 Identities=23% Similarity=0.227 Sum_probs=183.1
Q ss_pred CCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEec
Q 039311 313 KLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINL 392 (909)
Q Consensus 313 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L 392 (909)
+++.|++.++.+...+. .+ +++|++|++++|.++.+|. .+.+|++|+|++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~------~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD------CL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCS------CC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccCh------hh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 35666666554432221 11 2567777777777777777 45677778887777777776 5677777888
Q ss_pred CCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC
Q 039311 393 SHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP 472 (909)
Q Consensus 393 s~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp 472 (909)
++|.+.. +|. .+++|++|++++|. +..+|.. +++|++|++++| .++.+|. .+.+|+.|++++|. +..+|
T Consensus 109 s~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~-l~~l~ 177 (622)
T 3g06_A 109 FSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNNQ-LTSLP 177 (622)
T ss_dssp CSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCC
T ss_pred cCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCCC-CCCCc
Confidence 7776433 444 56777777777765 3445543 377788888875 4555554 35678888887754 44567
Q ss_pred ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcccc
Q 039311 473 ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIA 552 (909)
Q Consensus 473 ~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~ 552 (909)
..+.+|+.|++++|.+..+|.. +++|+.|++++|.. ..+|.. +++|+.|++ ++|.+..+| .
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l-~~l~~~---~~~L~~L~L---------s~N~L~~lp---~ 238 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIV---------SGNRLTSLP---V 238 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCCCC---CTTCCEEEC---------CSSCCSCCC---C
T ss_pred ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcc-cccCCC---CCCCCEEEc---------cCCccCcCC---C
Confidence 6677788888888888877764 46788888888743 345542 355666655 556666676 4
Q ss_pred ccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe-ecchhhcc
Q 039311 553 CLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE-RIPESIIQ 626 (909)
Q Consensus 553 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~ 626 (909)
.+++|+.|++++|.... +|. .+++|+.|+|++|.+..+|..+.++++|+.|+|++|.++ ..|..+..
T Consensus 239 ~l~~L~~L~Ls~N~L~~-----lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-----LPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCTTCCEEECCSSCCSC-----CCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCc-----CCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 56788899998843322 222 578999999999999999999999999999999999998 45554443
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=9.5e-22 Score=215.10 Aligned_cols=259 Identities=17% Similarity=0.093 Sum_probs=156.6
Q ss_pred CeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
.++.++++.+.+...+.. +..+++|++|++++|.+....|. +..+++|++|++++|......+ ++.+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455666777777655543 34566888888888876655543 7788888888888876544333 7888888888888
Q ss_pred cccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcccc
Q 039311 441 HCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 441 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+|. ++.++. .++|+.|++++|......+..+.+|++|++++|.+..++. .++.+++|+.|++++|......|..+
T Consensus 89 ~n~-l~~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 89 NNY-VQELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp SSE-EEEEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CCc-cccccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 864 555442 4778888888776555445555667777777777776643 56677777777777775544444433
Q ss_pred -cCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc
Q 039311 520 -CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP 598 (909)
Q Consensus 520 -~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 598 (909)
..+++|+.|++ ++|.+..++. ...+++|+.|+|++|.+..+|
T Consensus 165 ~~~l~~L~~L~L---------~~N~l~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 165 AASSDTLEHLNL---------QYNFIYDVKG----------------------------QVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp GGGTTTCCEEEC---------TTSCCCEEEC----------------------------CCCCTTCCEEECCSSCCCEEC
T ss_pred hhccCcCCEEEC---------CCCcCccccc----------------------------ccccccCCEEECCCCcCCcch
Confidence 24555555554 2233333322 223555666666666666555
Q ss_pred cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCC-cccCC---CCCCcCceecccCccccc
Q 039311 599 ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL-HSLPE---LPCDLSDIEAHCCSSLEA 664 (909)
Q Consensus 599 ~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~~lp~---l~~sL~~L~i~~C~~L~~ 664 (909)
..+..+++|+.|+|++|+++.+|..+..+++|+.|++++|+.. ..+|. -.++|+.|++.+|..++.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 5556666666666666666666665666666666666665433 23332 122444455554444443
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=5.4e-20 Score=221.00 Aligned_cols=346 Identities=20% Similarity=0.182 Sum_probs=208.2
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCCCeeEEEcCCCCccccccc-cccCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPENLVSLEMPHSSIKQLWKG-VQRLVNL 387 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~lp~~-~~~L~~L 387 (909)
.+++.|++++|.+.... +..+. +++|++|++++|.++.+|.. | .+.+|++|+|++|+++.+|.+ +.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 36788888877654321 23344 77888888888888888754 4 678888888888888888754 6788888
Q ss_pred CEEecCCCcCCCcCCC-CCccccccccccccccccc-eecccccCCCcccEeccccccCccccC-ccc-cCCc----CcE
Q 039311 388 KHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL-ETHSSIQYLNKLVVLNLKHCRSLTSLS-TSI-HLGS----LKK 459 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~-~~p~~i~~L~~L~~L~L~~c~~l~~lp-~~~-~l~~----L~~ 459 (909)
++|+|++|.+....+. ++++++|++|++++|.... ..|..++.+++|++|++++|. ++.++ ..+ .+.+ +..
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhh
Confidence 8888888876554443 7888888888888876543 456777888888888888864 44433 332 2322 335
Q ss_pred EEccCCCCCcccCcccc--CcceeeccccCcc--ccCcccccC-------------------------------------
Q 039311 460 LILSGCSNLMSFPELSC--NIEELSLDGTAIQ--EFPSSIERL------------------------------------- 498 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~~--~L~~L~L~~~~i~--~lp~~i~~l------------------------------------- 498 (909)
++++.+.....-+.... .+..+.+.++... ..+..+..+
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 66666443222222222 2345556555322 111111111
Q ss_pred ------------------------------------------CCCCEEeccCCCCCCcCc-------------------c
Q 039311 499 ------------------------------------------SSLILLNLGNCLRLEGLP-------------------S 517 (909)
Q Consensus 499 ------------------------------------------~~L~~L~L~~c~~l~~lp-------------------~ 517 (909)
.+|+.|++.+|......+ .
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 233344444332211100 0
Q ss_pred cccCCCCCCeeeccc-----------------ccccccccCcceeecCccccccCCCCeeecCcccccc-----------
Q 039311 518 KICKLKSLERLNLAE-----------------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE----------- 569 (909)
Q Consensus 518 ~l~~L~~L~~L~l~~-----------------~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~----------- 569 (909)
....+++|+.|++.. +++.+++..+....++..+..+++|+.+++.++....
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 112345555555522 2333444444444445555556666666655422111
Q ss_pred -----------ccccccCccCCCCCCCEEecCCCCCCC--cccccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEee
Q 039311 570 -----------QMGLLLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGI 635 (909)
Q Consensus 570 -----------~~~~~~~~~~~l~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L 635 (909)
+.......+..+++|+.|++++|.... .|..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 111111224456788888888887553 567788899999999999999866 567889999999999
Q ss_pred cCCCCCcccCC----CCCCcCceecccCcccccc
Q 039311 636 SHCERLHSLPE----LPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 636 ~~c~~L~~lp~----l~~sL~~L~i~~C~~L~~l 665 (909)
++| +++.++. ..++|+.|+++++. |+.+
T Consensus 526 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~ 557 (635)
T 4g8a_A 526 SHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTS 557 (635)
T ss_dssp TTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCBC
T ss_pred CCC-cCCCCChhHHhCCCCCCEEECCCCc-CCCC
Confidence 987 5666654 24578888888863 4444
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.9e-19 Score=195.77 Aligned_cols=238 Identities=21% Similarity=0.253 Sum_probs=116.6
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcC---CCCCccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKI---PDLSLATNLESLNFQGC 418 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~c 418 (909)
+.++++++.++.+|..+. .+|++|++++|.++.+|.. +.++++|++|++++|.+.... +.+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 356667777777776554 4677777777777777654 466777777777766543210 11333444444444444
Q ss_pred cccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC--cccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP--SSIE 496 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp--~~i~ 496 (909)
.. ..+|..+..+++|++|++++| .+..++ ..+.
T Consensus 89 ~i-~~l~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~ 123 (306)
T 2z66_A 89 GV-ITMSSNFLGLEQLEHLDFQHS--------------------------------------------NLKQMSEFSVFL 123 (306)
T ss_dssp SE-EEEEEEEETCTTCCEEECTTS--------------------------------------------EEESSTTTTTTT
T ss_pred cc-ccChhhcCCCCCCCEEECCCC--------------------------------------------cccccccchhhh
Confidence 32 233333444444444444442 222222 1344
Q ss_pred cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee--cCccccccCCCCeeecCccccccccccc
Q 039311 497 RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE--VPSSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
.+++|++|++++|......|..+..+++|+.|++. ++.+.. +|..+..+++|+.|++++| .+....
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---------~n~l~~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~ 191 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA---------GNSFQENFLPDIFTELRNLTFLDLSQC---QLEQLS 191 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT---------TCEEGGGEECSCCTTCTTCCEEECTTS---CCCEEC
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECC---------CCccccccchhHHhhCcCCCEEECCCC---CcCCcC
Confidence 45555555555554443444444445555544442 222221 3444444444444444442 111111
Q ss_pred cCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCee-cchhhccCC-CCCEEeecCC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFER-IPESIIQLS-HLFSLGISHC 638 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~-~L~~L~L~~c 638 (909)
...+..+++|+.|++++|.+..++. .+..+++|+.|+|++|++.. .|..+..++ +|+.|+|++|
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 2234445555555555555554332 44555555555555555552 333444442 5555555554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=4.5e-19 Score=203.99 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=117.0
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
..+.++..+..++.+|..+. .+|++|+|++|++..++ ..+.++++|++|+|++|.+....|. +.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34567778888888887765 68899999999988874 6688899999999999887666654 888999999999988
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCcc----ccCcceeeccccCccccC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPEL----SCNIEELSLDGTAIQEFP 492 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~----~~~L~~L~L~~~~i~~lp 492 (909)
......+..++.+++|++|++++|. ++.+|... ++++|+.|++++|..++.++.. +.+|++|++++|.+..+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 7554444558889999999999865 56666533 5888999988887777665531 233444444444444443
Q ss_pred cccccCCCCCEEeccCCC
Q 039311 493 SSIERLSSLILLNLGNCL 510 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~ 510 (909)
.+..+++|+.|+|++|.
T Consensus 213 -~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp -CCTTCTTCCEEECTTSC
T ss_pred -cccccccccEEECcCCc
Confidence 23444444444444443
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=5.5e-19 Score=202.47 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=129.6
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
.+.++..+..++.+|..+. .+++.|+|++|.+..++ ..+.++++|++|+|++|.+....+. +.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4556666666777776554 46667777777666665 4566666666666666654433332 5555566666665554
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
.....+..+..+++|++|++++|. ++.++.. .+..++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~------------------------------------------~~~~l~ 160 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNP-IESIPSY------------------------------------------AFNRIP 160 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCC-CCEECTT------------------------------------------TTTTCT
T ss_pred CCeeCHhHhhccccCceeeCCCCc-ccccCHH------------------------------------------HhhhCc
Confidence 332222345555555555555533 3333321 233444
Q ss_pred CCCEEeccCCCCCCcCcc-cccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCcc
Q 039311 500 SLILLNLGNCLRLEGLPS-KICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
+|+.|++++|..+..++. .+..+++|+.|++ ++|.+..+|. +..+++|+.|++++| .+.......+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L---------~~n~l~~~~~-~~~l~~L~~L~Ls~N---~l~~~~~~~~ 227 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNL---------AMCNLREIPN-LTPLIKLDELDLSGN---HLSAIRPGSF 227 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEEC---------TTSCCSSCCC-CTTCSSCCEEECTTS---CCCEECTTTT
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecC---------CCCcCccccc-cCCCcccCEEECCCC---ccCccChhhh
Confidence 444444444433333332 2344444444443 2223333332 444555555555552 2222223345
Q ss_pred CCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 579 FGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
.++++|+.|+|++|.+..+ +..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 5566777777777776653 44566777777777777777766643 4567777777777664
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=5.8e-19 Score=202.28 Aligned_cols=223 Identities=20% Similarity=0.229 Sum_probs=166.1
Q ss_pred CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLN 414 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 414 (909)
+..+++|++++|.++.++. .+ .+.+|++|+|++|.+..++ ..+..+++|++|+|++|.+....+. +..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4789999999999999874 44 7899999999999999887 5688999999999999987655554 89999999999
Q ss_pred cccccccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC
Q 039311 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP 492 (909)
Q Consensus 415 L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp 492 (909)
+++|......+..+..+++|++|++++|..+..++... ++++|+.|++++| .++.+|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n---------------------~l~~~~ 201 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---------------------NLREIP 201 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS---------------------CCSSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC---------------------cCcccc
Confidence 99987665455578999999999999988888777633 4666666666664 344444
Q ss_pred cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccc
Q 039311 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 572 (909)
.+..+++|+.|+|++|......|..+..+++|+.|++. ++.+..
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~---------~n~l~~-------------------------- 245 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI---------QSQIQV-------------------------- 245 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT---------TCCCCE--------------------------
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC---------CCceeE--------------------------
Confidence 35667777777777775554445555555555555542 222222
Q ss_pred cccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCe
Q 039311 573 LLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 573 ~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 618 (909)
.....+..+++|+.|+|++|.+..+|. .+..+++|+.|+|++|.+.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 122335567788888888888887654 4577889999999988765
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=5.5e-19 Score=203.19 Aligned_cols=240 Identities=23% Similarity=0.289 Sum_probs=161.5
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEecccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
....++.++..++.+|.++. ++|++|+|++|.+....|+ +.++++|++|+|++|......+..+..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888889999998764 6899999999987776665 88899999999999876665667788888888888888
Q ss_pred ccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcc-
Q 039311 442 CRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPS- 517 (909)
Q Consensus 442 c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~- 517 (909)
|. ++.+|.. + ++++|++|++++ |.+..+|. .+.++++|+.|++++|..++.++.
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRN---------------------NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCS---------------------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred Cc-CCccChhhhcccCCCCEEECCC---------------------CCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 64 5555543 2 366666666655 45555554 467888888888888777777665
Q ss_pred cccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc
Q 039311 518 KICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL 597 (909)
Q Consensus 518 ~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l 597 (909)
.+..+++|+.|++ ++|.+..+|. +..+++|+.|++++|. +.......+.++++|+.|+|++|.+..+
T Consensus 191 ~~~~l~~L~~L~L---------~~n~l~~~~~-~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 191 AFEGLFNLKYLNL---------GMCNIKDMPN-LTPLVGLEELEMSGNH---FPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp TTTTCTTCCEEEC---------TTSCCSSCCC-CTTCTTCCEEECTTSC---CSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred hccCCCCCCEEEC---------CCCccccccc-ccccccccEEECcCCc---CcccCcccccCccCCCEEEeCCCcCceE
Confidence 3667777777766 3444455543 5566666666666532 2222233355566666666666666643
Q ss_pred -ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 598 -PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 598 -p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 44556666666666666666655543 3556666666666653
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=7.8e-20 Score=198.83 Aligned_cols=224 Identities=23% Similarity=0.273 Sum_probs=157.2
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccc---ccccccCCCCCEEecCCCcCCCcCCCCCcccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQL---WKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 413 (909)
+.+|++|++++|.++.+|..+ .+.+|++|++++|.+..+ +..+..+++|++|++++|.+....+.+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 468999999999999999864 789999999999999866 567778999999999999866544458899999999
Q ss_pred ccccccccceec-ccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccc-
Q 039311 414 NFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQE- 490 (909)
Q Consensus 414 ~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~- 490 (909)
++++|......+ ..+..+++|++|++++|......+..+ ++++|++|++++ |.+..
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~ 165 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG---------------------NSFQEN 165 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT---------------------CEEGGG
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC---------------------Cccccc
Confidence 999986544333 467788888888888865333333333 355555555555 44432
Q ss_pred -cCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccc
Q 039311 491 -FPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE 569 (909)
Q Consensus 491 -lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 569 (909)
+|..+..+++|+.|++++|......|..+..+++|+.|++. +|.+..++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~---------~N~l~~~~--------------------- 215 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS---------HNNFFSLD--------------------- 215 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT---------TSCCSBCC---------------------
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC---------CCccCccC---------------------
Confidence 56666777777777777775544445555555555555542 22222221
Q ss_pred ccccccCccCCCCCCCEEecCCCCCCC-cccccCCCC-CCcEEECCCCCCe
Q 039311 570 QMGLLLPISFGLTSLTYLRLTDCGIIE-LPECLGQLS-SRSILLLEKNNFE 618 (909)
Q Consensus 570 ~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~-~L~~L~L~~n~l~ 618 (909)
...+..+++|+.|+|++|.+.. .|..+..++ +|+.|+|++|.+.
T Consensus 216 -----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 216 -----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp -----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred -----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 1124456778888888888775 456677774 8888888888876
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=5.2e-19 Score=190.20 Aligned_cols=220 Identities=21% Similarity=0.193 Sum_probs=108.8
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++.+++.++.+|..+ +.+|++|+++++.+..++. .+..+++|++|++++|.+....|. +..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666666676666554 3466677777766666653 456666666666666654444332 55555555555555542
Q ss_pred ccee-cccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 421 LLET-HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 421 l~~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
+..+ |..+..+++|++|++++|. +..++ |..+..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------------------------------------------~~~~~~l~ 129 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG-LQELG------------------------------------------PGLFRGLA 129 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC-CCCCC------------------------------------------TTTTTTCT
T ss_pred ccccCHHHhcCCcCCCEEECCCCc-CCEEC------------------------------------------HhHhhCCc
Confidence 2222 3344444444444444432 11111 22233444
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCcc
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
+|++|++++|......+..++.+++|+.|++ +++.+..+|. .+..+++|+.|++++|. +.+.....+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~ 197 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFL---------HGNRISSVPERAFRGLHSLDRLLLHQNR---VAHVHPHAF 197 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------CSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTT
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEEC---------CCCcccccCHHHhcCccccCEEECCCCc---ccccCHhHc
Confidence 4444444444332222222344444444443 2223333332 24444444455544421 222222334
Q ss_pred CCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCe
Q 039311 579 FGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 618 (909)
..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 456666666666666665543 3666666666666666655
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1e-21 Score=226.77 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=102.3
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC--CCC----CeeEEEcCCCCcc----
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI--PPE----NLVSLEMPHSSIK---- 375 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~--~~~----~L~~L~L~~~~i~---- 375 (909)
|..+++|+.|++.+|.+.+... ..+...+. .++|++|++++|.+.... ..+ .+. +|++|++++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARC-KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHH-HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHH-HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 5566666666666554332100 00111111 355666666666553311 011 122 4666666666655
Q ss_pred -ccccccccCCCCCEEecCCCcCCCcCCC------CCccccccccccccccccce----ecccccCCCcccEeccccccC
Q 039311 376 -QLWKGVQRLVNLKHINLSHSEHLTKIPD------LSLATNLESLNFQGCTCLLE----THSSIQYLNKLVVLNLKHCRS 444 (909)
Q Consensus 376 -~lp~~~~~L~~L~~L~Ls~~~~l~~~p~------l~~l~~L~~L~L~~c~~l~~----~p~~i~~L~~L~~L~L~~c~~ 444 (909)
.++..+..+++|++|++++|.+....+. ....++|++|++++|..... ++..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND- 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence 3455566666666666666653322111 11234566666666644332 23444555666666666654
Q ss_pred ccccC-ccc------cCCcCcEEEccCCCCCcc----cCc---cccCcceeeccccCcccc------CcccccCCCCCEE
Q 039311 445 LTSLS-TSI------HLGSLKKLILSGCSNLMS----FPE---LSCNIEELSLDGTAIQEF------PSSIERLSSLILL 504 (909)
Q Consensus 445 l~~lp-~~~------~l~~L~~L~Ls~c~~l~~----lp~---~~~~L~~L~L~~~~i~~l------p~~i~~l~~L~~L 504 (909)
+.... ..+ ..++|+.|++++|..... ++. ...+|++|++++|.+... +..+..+++|++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 22211 111 134666666666543221 222 124455555555554421 1112235555555
Q ss_pred eccCCCCCCc----CcccccCCCCCCeeec
Q 039311 505 NLGNCLRLEG----LPSKICKLKSLERLNL 530 (909)
Q Consensus 505 ~L~~c~~l~~----lp~~l~~L~~L~~L~l 530 (909)
++++|..... ++..+..+++|+.|++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 5555533221 3444444555555554
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.6e-21 Score=224.99 Aligned_cols=340 Identities=16% Similarity=0.170 Sum_probs=233.6
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC-----ccCCCC-CCCCeeEEEcCCCCcccc-ccc-cc
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK-----SLSSKI-PPENLVSLEMPHSSIKQL-WKG-VQ 382 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~l-p~~-~~ 382 (909)
++|+.|++.++.+.+.. ....+. +++|++|++++|.+. .++..+ .+++|++|++++|.+... +.. ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~----~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR----WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHH----HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchh----HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 45788888877654321 111122 678999999999987 445555 678999999999998752 222 22
Q ss_pred cCC----CCCEEecCCCcCCC----cCCC-CCccccccccccccccccceeccccc-----CCCcccEeccccccCcc--
Q 039311 383 RLV----NLKHINLSHSEHLT----KIPD-LSLATNLESLNFQGCTCLLETHSSIQ-----YLNKLVVLNLKHCRSLT-- 446 (909)
Q Consensus 383 ~L~----~L~~L~Ls~~~~l~----~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~-----~L~~L~~L~L~~c~~l~-- 446 (909)
.++ +|++|++++|.+.. .++. +..+++|++|++++|......+..+. ..++|++|++++|..-.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 344 79999999998663 3344 88999999999999886544343332 35689999999985322
Q ss_pred --ccCccc-cCCcCcEEEccCCCCCcc----cCc----cccCcceeeccccCccc-----cCcccccCCCCCEEeccCCC
Q 039311 447 --SLSTSI-HLGSLKKLILSGCSNLMS----FPE----LSCNIEELSLDGTAIQE-----FPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 447 --~lp~~~-~l~~L~~L~Ls~c~~l~~----lp~----~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~ 510 (909)
.++..+ .+++|+.|++++|..... +.. ...+|++|++++|.+.. ++..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 123333 479999999999874332 112 23489999999999985 67888899999999999996
Q ss_pred CCCc----C-cccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCc--cCCCCC
Q 039311 511 RLEG----L-PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPI--SFGLTS 583 (909)
Q Consensus 511 ~l~~----l-p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~ 583 (909)
.... + +.....+++|+.|++..| .+.......++..+..+++|+.|++++|.........+.. ....++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTS----CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCC----CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 4332 1 222346888998888543 1111122236777888999999999984322111001111 122469
Q ss_pred CCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCeec-chhhc----c-CCCCCEEeecCCCCCc-----ccCCC
Q 039311 584 LTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFERI-PESII----Q-LSHLFSLGISHCERLH-----SLPEL 647 (909)
Q Consensus 584 L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~----~-l~~L~~L~L~~c~~L~-----~lp~l 647 (909)
|+.|++++|.+.. ++..+..+++|+.|+|++|.+... +..+. . .++|+.|+|++|. ++ .+|..
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 393 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAAT 393 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHH
Confidence 9999999999884 567778889999999999988743 23332 2 6799999999985 44 45542
Q ss_pred ---CCCcCceecccCc
Q 039311 648 ---PCDLSDIEAHCCS 660 (909)
Q Consensus 648 ---~~sL~~L~i~~C~ 660 (909)
.++|++|++++|+
T Consensus 394 l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HHhCCCccEEECCCCC
Confidence 4689999999884
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2e-19 Score=193.48 Aligned_cols=170 Identities=22% Similarity=0.282 Sum_probs=134.5
Q ss_pred CCCccEEEeeCCCCCccCCC-C-CCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcC-CC-CCcccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSK-I-PPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKI-PD-LSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~-p~-l~~l~~L~~L 413 (909)
+.+|++|+++++.++.+|.. + .+.+|++|++++|.+..+ |..+..+++|++|++++|..++.+ |. +..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 57899999999999999864 4 789999999999999988 678999999999999999745554 44 8899999999
Q ss_pred ccccccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcccc
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEF 491 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~l 491 (909)
++++|......+..++.+++|++|++++|. ++.++.. + .+++|+.|++++ |.++.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~ 168 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG---------------------NRISSV 168 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---------------------SCCCEE
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCC---------------------Cccccc
Confidence 999998777667888999999999999864 4555442 2 355565555555 555555
Q ss_pred Cc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 492 PS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 492 p~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
|. .+..+++|+.|++++|......|..+..+++|+.|++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 54 4778888999999888766666777777777777766
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=7.1e-20 Score=212.10 Aligned_cols=231 Identities=17% Similarity=0.116 Sum_probs=131.1
Q ss_pred CCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 386 NLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+|++|+|++|.+....|. ++.+++|++|+|++|......| ++.+++|++|++++|. ++.+|. .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEECcC
Confidence 566666666655544442 5666666666666655443333 6666667777776653 444443 26677777777
Q ss_pred CCCCcccCccccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCccccc-CCCCCCeeecccccccccccCc
Q 039311 465 CSNLMSFPELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSKIC-KLKSLERLNLAEALKELKAEGI 542 (909)
Q Consensus 465 c~~l~~lp~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~-~L~~L~~L~l~~~l~~L~l~~~ 542 (909)
|......+..+.+|+.|++++|.+..+ |..++.+++|+.|+|++|...+..|..+. .+++|+.|++ ++|
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L---------s~N 179 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL---------QYN 179 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC---------TTS
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec---------CCC
Confidence 655554444556677777777777755 44677778888888888766665565554 5666666665 333
Q ss_pred ceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe--ec
Q 039311 543 AIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE--RI 620 (909)
Q Consensus 543 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~l 620 (909)
.+..+|. ...+++|+.|++++|... ..++.+..+++|+.|+|++|.+..+|..+..+++|+.|++++|.+. .+
T Consensus 180 ~l~~~~~-~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDVKG-QVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEEEC-CCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccccc-cccCCCCCEEECCCCCCC----CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 4444433 223555555555542221 1222344455555555555555555555555555555555555555 44
Q ss_pred chhhccCCCCCEEeec
Q 039311 621 PESIIQLSHLFSLGIS 636 (909)
Q Consensus 621 p~~i~~l~~L~~L~L~ 636 (909)
|..+..++.|+.|++.
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 4455555555555443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=4.6e-20 Score=201.68 Aligned_cols=235 Identities=15% Similarity=0.068 Sum_probs=159.2
Q ss_pred CCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 386 NLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
.++.++++.+.+...++. +..+++|++|++++|......|..++.+++|++|++++|. +...+....+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcC
Confidence 355566666654333333 4567789999999987766666788899999999999865 44444444688888888887
Q ss_pred CCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 465 CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 465 c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
|. +..++. ..+|+.|++++|.+..++.. .+++|+.|++++|......|.
T Consensus 90 n~-l~~l~~-~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~--------------------------- 138 (317)
T 3o53_A 90 NY-VQELLV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDL--------------------------- 138 (317)
T ss_dssp SE-EEEEEE-CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGB---------------------------
T ss_pred Cc-cccccC-CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccch---------------------------
Confidence 64 233332 14556666666665555432 244555555555543332222
Q ss_pred eecCccccccCCCCeeecCccccccccccccCcc-CCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh
Q 039311 545 REVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS-FGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623 (909)
Q Consensus 545 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 623 (909)
.+..+++|+.|++++|. +.......+ ..+++|+.|++++|.+..++.. ..+++|+.|+|++|+++.+|..
T Consensus 139 -----~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 139 -----DEGCRSRVQYLDLKLNE---IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp -----CTGGGSSEEEEECTTSC---CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG
T ss_pred -----hhhccCCCCEEECCCCC---CCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh
Confidence 34555666666666532 222222333 2578999999999999987544 4599999999999999999989
Q ss_pred hccCCCCCEEeecCCCCCcccCCC---CCCcCceecccCccc
Q 039311 624 IIQLSHLFSLGISHCERLHSLPEL---PCDLSDIEAHCCSSL 662 (909)
Q Consensus 624 i~~l~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L 662 (909)
+..+++|+.|++++| .++.+|.. .++|+.|++.+++--
T Consensus 210 ~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 210 FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999999997 57788863 458899999887544
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=4.9e-19 Score=196.70 Aligned_cols=261 Identities=22% Similarity=0.220 Sum_probs=194.6
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC-CCCccccccccccccccccceecccccCCCcccEeccc
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-DLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
......+.+++.++.+|.++. ++|++|++++|.+....+ .+.++++|++|++++|......+..++.+++|++|+++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 334458899999999998765 589999999998766555 38899999999999987665556778889999999998
Q ss_pred cccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc--ccccCCCCCEEeccCCCCCCcC-
Q 039311 441 HCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS--SIERLSSLILLNLGNCLRLEGL- 515 (909)
Q Consensus 441 ~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l- 515 (909)
+|. ++.+|.. + ++++|++|++++ |.+..+|. .+..+++|++|++++|.....+
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~L~~---------------------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 109 YNY-LSNLSSSWFKPLSSLTFLNLLG---------------------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp SSC-CSSCCHHHHTTCTTCSEEECTT---------------------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCc-CCcCCHhHhCCCccCCEEECCC---------------------CCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 864 5566554 2 466666666655 55566665 6889999999999999656555
Q ss_pred cccccCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCccccccccccccCc-cCCCCCCCEEecCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCG 593 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~ 593 (909)
|..++.+++|+.|++. ++.+..+ |..+..+++|+.|++++|... . .... +..+++|+.|++++|.
T Consensus 167 ~~~~~~l~~L~~L~l~---------~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 167 RKDFAGLTFLEELEID---------ASDLQSYEPKSLKSIQNVSHLILHMKQHI---L-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TTTTTTCCEEEEEEEE---------ETTCCEECTTTTTTCSEEEEEEEECSCST---T-HHHHHHHHTTTEEEEEEESCB
T ss_pred HHHccCCCCCCEEECC---------CCCcCccCHHHHhccccCCeecCCCCccc---c-chhhhhhhcccccEEECCCCc
Confidence 5668889888888874 4445544 778999999999999984322 1 1111 3348999999999999
Q ss_pred CCCccc----ccCCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCCCCcccCCC----CCCcCceecccCc
Q 039311 594 IIELPE----CLGQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCERLHSLPEL----PCDLSDIEAHCCS 660 (909)
Q Consensus 594 l~~lp~----~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----~~sL~~L~i~~C~ 660 (909)
+..++. .....+.++.++|+++.+. .+|..+..+++|+.|++++| .++.+|.. .++|+.|++.+++
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 986432 2345678889999888776 57888999999999999997 56677752 3466667766653
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=3.2e-19 Score=194.52 Aligned_cols=238 Identities=19% Similarity=0.155 Sum_probs=166.1
Q ss_pred ccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc-cceeccccc-------CCCcccEeccccccCccccCccc
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC-LLETHSSIQ-------YLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~-l~~~p~~i~-------~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
+..++|+.|++++|.+ .+|. +... |++|++++|.. ...+|..+. .+++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4455667777777665 4443 3322 77777777655 234454444 57777777777765444555543
Q ss_pred ---cCCcCcEEEccCCCCCcccCcc--------ccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCc--Cccc
Q 039311 453 ---HLGSLKKLILSGCSNLMSFPEL--------SCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEG--LPSK 518 (909)
Q Consensus 453 ---~l~~L~~L~Ls~c~~l~~lp~~--------~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--lp~~ 518 (909)
.+++|++|++++|...+. |.. ..+|++|++++|.+..++ ..++.+++|+.|++++|...+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 477777777777654443 431 157788888888888776 6788999999999999876654 3444
Q ss_pred c--cCCCCCCeeecccccccccccCcceeecC---cc-ccccCCCCeeecCccccccccccc-cCccCCCCCCCEEecCC
Q 039311 519 I--CKLKSLERLNLAEALKELKAEGIAIREVP---SS-IACLKNLGRLSFESFMCHEQMGLL-LPISFGLTSLTYLRLTD 591 (909)
Q Consensus 519 l--~~L~~L~~L~l~~~l~~L~l~~~~~~~lp---~~-i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~ 591 (909)
+ +.+++|+.|++. +|.+..++ .. +..+++|+.|++++|. +.+.. .+.+..+++|+.|+|++
T Consensus 195 ~~~~~l~~L~~L~L~---------~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 195 LCPLKFPTLQVLALR---------NAGMETPSGVCSALAAARVQLQGLDLSHNS---LRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp SCTTSCTTCCEEECT---------TSCCCCHHHHHHHHHHTTCCCSEEECTTSC---CCSSCCCSCCCCCTTCCEEECTT
T ss_pred HHhccCCCCCEEECC---------CCcCcchHHHHHHHHhcCCCCCEEECCCCc---CCcccchhhhhhcCCCCEEECCC
Confidence 4 788888888874 44555332 22 3567899999998843 33222 23455688999999999
Q ss_pred CCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 592 CGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
|.+.++|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 263 N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 263 TGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 99998888777 899999999999998886 8889999999999875
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.6e-18 Score=200.84 Aligned_cols=222 Identities=16% Similarity=0.076 Sum_probs=183.7
Q ss_pred ccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccc
Q 039311 406 LATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDG 485 (909)
Q Consensus 406 ~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~ 485 (909)
.+++|++|+|++|......|..++.+++|++|+|++|. +...+....+++|++|++++|. +..+|.. .+|+.|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG-PSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-CCcCEEECcC
Confidence 56799999999998777667899999999999999976 5545544579999999999974 4455533 7899999999
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee-cCcccc-ccCCCCeeecC
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE-VPSSIA-CLKNLGRLSFE 563 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i~-~l~~L~~L~l~ 563 (909)
|.+..+|.. .+++|+.|++++|......|..++.+++|+.|++ ++|.+.. .|..+. .+++|+.|+++
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---------s~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL---------KLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC---------TTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC---------CCCCCCCcChHHHhhhCCcccEEecC
Confidence 999988764 5789999999999888777888899999988887 4455554 455554 78999999999
Q ss_pred ccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCC-c
Q 039311 564 SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL-H 642 (909)
Q Consensus 564 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~ 642 (909)
+|..... +....+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+.. .
T Consensus 178 ~N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 178 YNFIYDV-----KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TSCCCEE-----ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCccccc-----cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 8543322 445568999999999999999988899999999999999999999999999999999999998765 3
Q ss_pred ccCC
Q 039311 643 SLPE 646 (909)
Q Consensus 643 ~lp~ 646 (909)
.+|.
T Consensus 253 ~~~~ 256 (487)
T 3oja_A 253 TLRD 256 (487)
T ss_dssp HHHH
T ss_pred chHH
Confidence 4443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=2e-17 Score=176.83 Aligned_cols=145 Identities=21% Similarity=0.246 Sum_probs=90.9
Q ss_pred EEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccccc
Q 039311 344 YLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCL 421 (909)
Q Consensus 344 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 421 (909)
..+..+..+..+|..++ .+|++|++++|.++.++. .+.++++|++|++++|.+....+. +..+++|++|++++|...
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 34455566777777664 578888888888888775 677888888888888876554443 777778888888777655
Q ss_pred ceecccccCCCcccEeccccccCccccCc-cc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccc--cCccccc
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLST-SI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQE--FPSSIER 497 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~--lp~~i~~ 497 (909)
...+..+..+++|++|++++|. +..++. .+ ++++|++|++++ |.+.. +|..++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH---------------------NLIQSFKLPEYFSN 147 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS---------------------SCCCCCCCCGGGGG
T ss_pred ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcC---------------------CccceecCchhhcc
Confidence 5555666777777777776643 333322 11 234444443333 33332 4555566
Q ss_pred CCCCCEEeccCCCC
Q 039311 498 LSSLILLNLGNCLR 511 (909)
Q Consensus 498 l~~L~~L~L~~c~~ 511 (909)
+++|+.|++++|..
T Consensus 148 l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 148 LTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 66666666666543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=3.4e-19 Score=194.29 Aligned_cols=238 Identities=17% Similarity=0.131 Sum_probs=152.1
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccc--cccccc-------cCCCCCEEecCCCcCCCcCCC-C--Ccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQ--LWKGVQ-------RLVNLKHINLSHSEHLTKIPD-L--SLA 407 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--lp~~~~-------~L~~L~~L~Ls~~~~l~~~p~-l--~~l 407 (909)
.+|++|++++|.+ .+|..+.. .|++|+++++.+.. +|..+. .+++|++|++++|.+.+.+|. + ..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3566677777777 66654422 27788888887754 454444 688888888888887766765 3 788
Q ss_pred ccccccccccccccceecccccCC-----CcccEeccccccCccccC-ccc-cCCcCcEEEccCCCCCccc--C-----c
Q 039311 408 TNLESLNFQGCTCLLETHSSIQYL-----NKLVVLNLKHCRSLTSLS-TSI-HLGSLKKLILSGCSNLMSF--P-----E 473 (909)
Q Consensus 408 ~~L~~L~L~~c~~l~~~p~~i~~L-----~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls~c~~l~~l--p-----~ 473 (909)
++|++|++++|..... |..++.+ ++|++|++++|. +..++ ..+ ++++|++|++++|...+.. + .
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 8888888888765554 7777766 888888888865 44444 444 5888888888887654331 1 2
Q ss_pred cccCcceeeccccCccccC---cc-cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 474 LSCNIEELSLDGTAIQEFP---SS-IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 474 ~~~~L~~L~L~~~~i~~lp---~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
...+|++|++++|.+..++ .. +..+++|+.|++++|......|. .
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------------------------~ 247 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-------------------------------P 247 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-------------------------------S
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-------------------------------h
Confidence 3345666666666665332 22 24556666666666654443321 1
Q ss_pred cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCee
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER 619 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~ 619 (909)
.+..+++|+.|++++|... ..+..+. ++|+.|+|++|.+..+|. +..+++|+.|+|++|.++.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~----~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK----QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS----SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccC----hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 1223344555555542221 1111122 678888888888888876 8888999999999988763
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=8.4e-19 Score=209.05 Aligned_cols=320 Identities=16% Similarity=0.080 Sum_probs=163.2
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-----CCCC-CCCCeeEEEcCCCCccccccccc
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-----SSKI-PPENLVSLEMPHSSIKQLWKGVQ 382 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-----p~~~-~~~~L~~L~L~~~~i~~lp~~~~ 382 (909)
++++|+.|++.+|.+.+..... +...+. .++|++|+++++.+..+ +..+ .+.+|++|+++++.+..++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhH-HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 5667777777655432110000 000011 45667777766665422 2222 45667777777766666666666
Q ss_pred cCCCCCEEecCCCcCCCc----CCCCCccccccccccccccccceecccccCCCcccEeccccccCccccC--cc-ccCC
Q 039311 383 RLVNLKHINLSHSEHLTK----IPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLS--TS-IHLG 455 (909)
Q Consensus 383 ~L~~L~~L~Ls~~~~l~~----~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp--~~-~~l~ 455 (909)
.+++|+.|++++...... ...+..+++|+.|++.++ ....+|..+..+++|++|++++|. +.... .. .+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCc
Confidence 677777777664322211 112556666666666653 334455566666677777777665 32211 11 2466
Q ss_pred cCcEEEccCCCCCcccC---ccccCcceeeccc-----------cCcc--ccCcccccCCCCCEEeccCCCCCCcCcccc
Q 039311 456 SLKKLILSGCSNLMSFP---ELSCNIEELSLDG-----------TAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 456 ~L~~L~Ls~c~~l~~lp---~~~~~L~~L~L~~-----------~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+|+.|+++++-....++ ....+|++|++++ +.++ .++..+..+++|++|+++.+......+..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 67777666332111121 2234566666662 3333 233334456666666664444433333334
Q ss_pred cC-CCCCCeeecccccccccccCcceee------cCccccccCCCCeeecCcccccc-ccccccCccC-CCCCCCEEecC
Q 039311 520 CK-LKSLERLNLAEALKELKAEGIAIRE------VPSSIACLKNLGRLSFESFMCHE-QMGLLLPISF-GLTSLTYLRLT 590 (909)
Q Consensus 520 ~~-L~~L~~L~l~~~l~~L~l~~~~~~~------lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~~-~l~~L~~L~Ls 590 (909)
+. +++|+.|++..+- ..+.++. ++..+..+++|+.|+++. |.+ +.+..+..+. .+++|+.|+|+
T Consensus 399 ~~~~~~L~~L~l~~~~-----~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~--~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLD-----REERITDLPLDNGVRSLLIGCKKLRRFAFYL--RQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHCCSCCEEEEEECS-----CCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC--CGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HhhCCCCcEEEEeecC-----CCccccCchHHHHHHHHHHhCCCCCEEEEec--CCCCccHHHHHHHHHhCccceEeecc
Confidence 33 6666666653210 1122222 222245566666666654 332 2222222222 25666666666
Q ss_pred CCCCCC--cccccCCCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCC
Q 039311 591 DCGIIE--LPECLGQLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 591 ~~~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~ 639 (909)
+|.+.+ ++..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|+
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 666653 4445566666666666666655 244444566666666666665
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.4e-16 Score=176.63 Aligned_cols=231 Identities=22% Similarity=0.240 Sum_probs=174.5
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC--CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~ 419 (909)
+.++.+++.++.+|..+ +.++++|+|++|+|+.+|. .+.++++|++|+|++|.+.+.+|. |.++++|+++...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56778889999999887 4689999999999999996 478999999999999998887774 7889998876665555
Q ss_pred cccee-cccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCcc-----ccCcceeeccccCcccc
Q 039311 420 CLLET-HSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPEL-----SCNIEELSLDGTAIQEF 491 (909)
Q Consensus 420 ~l~~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~-----~~~L~~L~L~~~~i~~l 491 (909)
.+..+ |..++.+++|++|++++|. ++.+|... ...++..|++.++..+..++.. ...++.|++++|.|+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 56666 5678999999999999964 66666544 4677888999888888777652 34577899999999999
Q ss_pred CcccccCCCCCEEeccCCCCCCcCccc-ccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccc
Q 039311 492 PSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 492 p~~i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
|..+....+|+.|.+.++..++.+|.. +..+++|+.|++ ++|.++.+|.. .+.+|+.|.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL---------s~N~l~~lp~~--~~~~L~~L~--------- 229 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI---------SRTRIHSLPSY--GLENLKKLR--------- 229 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC---------TTSCCCCCCSS--SCTTCCEEE---------
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc---------CCCCcCccChh--hhccchHhh---------
Confidence 988888888999999888788888764 577777777776 44555666542 233444443
Q ss_pred cccccCccCCCCCCCEEecCCCC-CCCcccccCCCCCCcEEECCC
Q 039311 571 MGLLLPISFGLTSLTYLRLTDCG-IIELPECLGQLSSRSILLLEK 614 (909)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp~~l~~l~~L~~L~L~~ 614 (909)
+.++. +..+| .+..+++|+.+++.+
T Consensus 230 ------------------~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ------------------ARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ------------------CTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ------------------hccCCCcCcCC-CchhCcChhhCcCCC
Confidence 33332 22344 366677777777765
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=4.2e-16 Score=167.72 Aligned_cols=200 Identities=22% Similarity=0.238 Sum_probs=119.6
Q ss_pred cccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEE
Q 039311 381 VQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKL 460 (909)
Q Consensus 381 ~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 460 (909)
+.++++|+.++++++.+....+.+. ++|++|++++|......+..+..+++|++|++++|. ++.++....+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEE
Confidence 3445556666666554332222232 456666666665544445667777777777777743 4444443334444444
Q ss_pred EccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccccccccc
Q 039311 461 ILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAE 540 (909)
Q Consensus 461 ~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~ 540 (909)
++++ |.+..+|..+..+++|+.|++++|......|..+..+++|+.|++.
T Consensus 83 ~Ls~---------------------N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~--------- 132 (290)
T 1p9a_G 83 DLSH---------------------NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--------- 132 (290)
T ss_dssp ECCS---------------------SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT---------
T ss_pred ECCC---------------------CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC---------
Confidence 4444 5555666666777777777777765443333445555555555442
Q ss_pred CcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCCCee
Q 039311 541 GIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFER 619 (909)
Q Consensus 541 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~ 619 (909)
+|.+..+|. ..+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+++.
T Consensus 133 ~N~l~~~~~--------------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 133 GNELKTLPP--------------------------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp TSCCCCCCT--------------------------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCccCh--------------------------hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 222222221 1234567777888888888777654 4678888888888888888
Q ss_pred cchhhccCCCCCEEeecCCC
Q 039311 620 IPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 620 lp~~i~~l~~L~~L~L~~c~ 639 (909)
+|..+..+++|+.|+|++|+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCC
T ss_pred cChhhcccccCCeEEeCCCC
Confidence 88888777788888888764
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.7e-17 Score=182.75 Aligned_cols=223 Identities=18% Similarity=0.221 Sum_probs=112.3
Q ss_pred eeEEEcCCCCccccccccccC--CCCCEEecCCCcCCCcCCCCCccccccccccccccccce-ecccccCCCcccEeccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQRL--VNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE-THSSIQYLNKLVVLNLK 440 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~~L--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~-~p~~i~~L~~L~~L~L~ 440 (909)
++.++++++.+. +..+..+ ++++.|+++++.+....+.+..+++|++|++++|..... ++..++.+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455556555554 3344455 667777777776666666666677777777777664433 55666677777777777
Q ss_pred cccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc--Ccc
Q 039311 441 HCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG--LPS 517 (909)
Q Consensus 441 ~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~ 517 (909)
+|......+..+ .+++|++|++++|..+.. ..+|..+..+++|++|++++|..+.. ++.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCH------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 764322333333 366666666666533221 01333344555555555555522221 333
Q ss_pred cccCCC-CCCeeecccccccccccCcce--eecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCC-
Q 039311 518 KICKLK-SLERLNLAEALKELKAEGIAI--REVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCG- 593 (909)
Q Consensus 518 ~l~~L~-~L~~L~l~~~l~~L~l~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~- 593 (909)
.+..++ +|+.|++..+-. .+ ..+|..+..+++|+.|++++ |..+.+..++.+..+++|+.|++++|.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~-------~~~~~~l~~~~~~~~~L~~L~l~~--~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRK-------NLQKSDLSTLVRRCPNLVHLDLSD--SVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHHSCTTCCEEECCSCGG-------GSCHHHHHHHHHHCTTCSEEECTT--CTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred HHHhcccCCCEEEeCCCcc-------cCCHHHHHHHHhhCCCCCEEeCCC--CCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 344444 444444422100 00 22333444455555555555 222223333344445556666665553
Q ss_pred CCC-cccccCCCCCCcEEECCCC
Q 039311 594 IIE-LPECLGQLSSRSILLLEKN 615 (909)
Q Consensus 594 l~~-lp~~l~~l~~L~~L~L~~n 615 (909)
+.. ....+..+++|+.|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 111 1123445555666666555
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=2.4e-18 Score=205.12 Aligned_cols=191 Identities=17% Similarity=0.159 Sum_probs=94.2
Q ss_pred CCCccEEEeeCCCCCccC-CCC-C-C-CCeeEEEcCCCC-cc--ccccccccCCCCCEEecCCCcCCCc----CCC-CCc
Q 039311 339 STELRYLQWHGCPLKSLS-SKI-P-P-ENLVSLEMPHSS-IK--QLWKGVQRLVNLKHINLSHSEHLTK----IPD-LSL 406 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp-~~~-~-~-~~L~~L~L~~~~-i~--~lp~~~~~L~~L~~L~Ls~~~~l~~----~p~-l~~ 406 (909)
+++|++|+++++.+.... ..+ . . .+|++|+++++. +. .++.....+++|++|+|++|.+... ++. ...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 455666666665433211 111 1 1 236666666554 11 1222233566666666666653322 111 234
Q ss_pred ccccccccccccccc----ceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcc---cC---ccc
Q 039311 407 ATNLESLNFQGCTCL----LETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMS---FP---ELS 475 (909)
Q Consensus 407 l~~L~~L~L~~c~~l----~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~---lp---~~~ 475 (909)
+++|++|++++|... ..++..+..+++|++|++++|. +..++..+ ++++|+.|+++++..... .+ ...
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 566666666665443 2334444556666666666643 33344333 366666666654322211 11 122
Q ss_pred cCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc-CcccccCCCCCCeeec
Q 039311 476 CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG-LPSKICKLKSLERLNL 530 (909)
Q Consensus 476 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~l~~L~~L~~L~l 530 (909)
.+|+.|.+.++....+|..+..+++|++|++++|..... ++..+..+++|+.|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 355566666555556666666666666666666652221 1222456666666665
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.4e-15 Score=161.94 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 417 (909)
..++.++++++.++.+|..+. .+|++|++++|.+..++. .+..+++|++|++++|.+....+. +..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 356788888888888887665 678888888888888774 577888888888888875544444 57778888888887
Q ss_pred ccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccC
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSG 464 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~ 464 (909)
|......+..+..+++|++|++++|. ++.++.. + ++++|++|++++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCC
Confidence 76544334455667777777777643 3343332 2 355555555554
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=4.9e-16 Score=168.82 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=49.4
Q ss_pred cCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 578 SFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
+..+++|+.|++++|.+.+++. +..+++|+.|+|++|+++.++ .+..+++|+.|++++|+ +...|
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe-eecCC
Confidence 5556778888888888777665 777888888888888888777 37888888888888875 44444
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=8.2e-18 Score=185.33 Aligned_cols=197 Identities=21% Similarity=0.291 Sum_probs=102.7
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCc-CCC-CCccccccccccccccccceecccccCCCcccEecc
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTK-IPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L 439 (909)
.+++.|+++++.+...+..+..+++|++|++++|.+... +|. +..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345555555555555554455566666666666654332 333 555666666666666554455556666666777777
Q ss_pred ccccCccc--cCccc-cCCcCcEEEccCCCCCcc--cCc---ccc-CcceeeccccC--c--cccCcccccCCCCCEEec
Q 039311 440 KHCRSLTS--LSTSI-HLGSLKKLILSGCSNLMS--FPE---LSC-NIEELSLDGTA--I--QEFPSSIERLSSLILLNL 506 (909)
Q Consensus 440 ~~c~~l~~--lp~~~-~l~~L~~L~Ls~c~~l~~--lp~---~~~-~L~~L~L~~~~--i--~~lp~~i~~l~~L~~L~L 506 (909)
++|..++. ++..+ ++++|++|++++|..+.. ++. ..+ +|++|++++|. + ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 66644442 44433 466666666666533221 111 112 33444444442 1 234455555666666666
Q ss_pred cCCCC-CCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCC
Q 039311 507 GNCLR-LEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLT 585 (909)
Q Consensus 507 ~~c~~-l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 585 (909)
++|.. ....+.. +..+++|+.|++++ |.......+..+..+++|+
T Consensus 230 ~~~~~l~~~~~~~--------------------------------l~~l~~L~~L~l~~--~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 230 SDSVMLKNDCFQE--------------------------------FFQLNYLQHLSLSR--CYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp TTCTTCCGGGGGG--------------------------------GGGCTTCCEEECTT--CTTCCGGGGGGGGGCTTCC
T ss_pred CCCCcCCHHHHHH--------------------------------HhCCCCCCEeeCCC--CCCCCHHHHHHHhcCCCCC
Confidence 66542 2233333 44445555555555 3333333333455577777
Q ss_pred EEecCCC
Q 039311 586 YLRLTDC 592 (909)
Q Consensus 586 ~L~Ls~~ 592 (909)
.|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 7777777
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=6.5e-16 Score=161.34 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=42.8
Q ss_pred CCCCEEecCCCC-CCCcc-cccCCC-CCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCC
Q 039311 582 TSLTYLRLTDCG-IIELP-ECLGQL-SSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL 641 (909)
Q Consensus 582 ~~L~~L~Ls~~~-l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 641 (909)
++|+.|++++|. +..+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..|
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccCC
Confidence 567777777774 76664 456777 8888888888888888865 6888888888887643
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=2.2e-18 Score=205.48 Aligned_cols=366 Identities=15% Similarity=0.136 Sum_probs=184.0
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCC--CCCCccEEEeeCC-CCCc--cCCCC-CCCCeeEEEcCCCCccc-----c
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGL--ESTELRYLQWHGC-PLKS--LSSKI-PPENLVSLEMPHSSIKQ-----L 377 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l--~~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~i~~-----l 377 (909)
..+++|+.|++.++.+.+... ..+ .+++|+.|++.+| .+.. ++..+ .+++|++|++++|.+.. +
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL-----ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH-----HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHH-----HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 356677777777554322110 001 1456777777666 3322 33333 45667777777666443 2
Q ss_pred ccccccCCCCCEEecCCCcCCCcCC-----C-CCccccccccccccccccceecccccCCCcccEeccccccC------c
Q 039311 378 WKGVQRLVNLKHINLSHSEHLTKIP-----D-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS------L 445 (909)
Q Consensus 378 p~~~~~L~~L~~L~Ls~~~~l~~~p-----~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~------l 445 (909)
+.....+++|++|++++|. ..++ . +..+++|++|++++|.....++..+..+++|+.|++..|.. +
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 2223355667777776664 1111 1 23456677777776655555666666666777776554421 1
Q ss_pred cccCccc-cCCcCcEE-EccCCCCCcccCc---cccCcceeeccccCccc--cCcccccCCCCCEEeccCCCCCCcCccc
Q 039311 446 TSLSTSI-HLGSLKKL-ILSGCSNLMSFPE---LSCNIEELSLDGTAIQE--FPSSIERLSSLILLNLGNCLRLEGLPSK 518 (909)
Q Consensus 446 ~~lp~~~-~l~~L~~L-~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 518 (909)
..++..+ ++++|+.| .+.+. ....++. ...+|++|++++|.+.. ++..+..+++|+.|++++|.....++..
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l 333 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence 1122222 35555555 22221 1122332 24567777777776552 3333556777777777776221222222
Q ss_pred ccCCCCCCeeecccccccccccCccee--ecCccccccCCCCeeecCccccccccccccCccC-CCCCCCEEecC--C--
Q 039311 519 ICKLKSLERLNLAEALKELKAEGIAIR--EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLT--D-- 591 (909)
Q Consensus 519 l~~L~~L~~L~l~~~l~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls--~-- 591 (909)
...+++|+.|++..+-..-....+.++ .+......+++|+.|.+. |+++....+..+. .+++|+.|+++ +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~---~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF---CRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE---ESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh---cCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 334667777766321000000011111 111112346777777554 4444443333333 36788888887 2
Q ss_pred --CCCCCcc------cccCCCCCCcEEECCCCCCe-ecchhhcc-CCCCCEEeecCCCCCcc-cC---CCCCCcCceecc
Q 039311 592 --CGIIELP------ECLGQLSSRSILLLEKNNFE-RIPESIIQ-LSHLFSLGISHCERLHS-LP---ELPCDLSDIEAH 657 (909)
Q Consensus 592 --~~l~~lp------~~l~~l~~L~~L~L~~n~l~-~lp~~i~~-l~~L~~L~L~~c~~L~~-lp---~l~~sL~~L~i~ 657 (909)
+.++..| ..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|..-.. ++ ...++|+.|++.
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 3344222 2255677888888876 444 22333433 77888888888763111 11 124678888888
Q ss_pred cCcccccccCcchhccccCCCcceeEecccCC
Q 039311 658 CCSSLEALSGLSILFTQTSWNSQFFYFVNCFK 689 (909)
Q Consensus 658 ~C~~L~~l~~~~~l~~~~~~~~~~l~~~~C~~ 689 (909)
+|+- +...... +. .....++.+.+.+|+.
T Consensus 490 ~n~~-~~~~~~~-~~-~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 490 DCPF-GDKALLA-NA-SKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCSC-CHHHHHH-TG-GGGGGSSEEEEESSCC
T ss_pred CCCC-cHHHHHH-HH-HhCCCCCEEeeeCCCC
Confidence 8874 2211110 00 1123456778888865
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=3.7e-15 Score=158.64 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=44.7
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecc-cccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~-~i~~L~~L~~L~L~ 440 (909)
++++++++++.++.+|..+. ++|+.|++++|.+....+. +..+++|++|++++|... .++. .++.+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 45677777777777776554 5677777777765444332 666666666666665432 2332 23445555555555
Q ss_pred c
Q 039311 441 H 441 (909)
Q Consensus 441 ~ 441 (909)
+
T Consensus 94 ~ 94 (270)
T 2o6q_A 94 D 94 (270)
T ss_dssp S
T ss_pred C
Confidence 4
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=9.5e-16 Score=163.81 Aligned_cols=190 Identities=19% Similarity=0.132 Sum_probs=113.0
Q ss_pred CCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNF 415 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 415 (909)
..|++|++++|.++.++. .+ .+.+|++|++++|.+..++. .+..+++|++|++++|.+....+. +..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 456677777777766664 33 56677777777777766654 466677777777777765555443 666777777777
Q ss_pred ccccccceecccccCCCcccEeccccccCccc--cCccc-cCCcCcEEEccCCCCCcccCccc---cCcc----eeeccc
Q 039311 416 QGCTCLLETHSSIQYLNKLVVLNLKHCRSLTS--LSTSI-HLGSLKKLILSGCSNLMSFPELS---CNIE----ELSLDG 485 (909)
Q Consensus 416 ~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~---~~L~----~L~L~~ 485 (909)
++|......+..++.+++|++|++++|. ++. +|..+ ++++|+.|++++|......+..+ .+++ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 7765544444456677777777777654 333 34444 46677777777654433222221 2333 566666
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
|.+..+|.......+|+.|++++|......+..+..+++|+.|++
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 666666665555556777777766533222223455666666655
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=7.5e-16 Score=167.63 Aligned_cols=217 Identities=18% Similarity=0.175 Sum_probs=117.8
Q ss_pred CeeEEEcCCCCccc-----cccccccCCCCCEEecCCCcCCCcCCC-C--Cccccccccccccccccceec----ccccC
Q 039311 363 NLVSLEMPHSSIKQ-----LWKGVQRLVNLKHINLSHSEHLTKIPD-L--SLATNLESLNFQGCTCLLETH----SSIQY 430 (909)
Q Consensus 363 ~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~c~~l~~~p----~~i~~ 430 (909)
.++.|.+.+..+.. +.. ...+++|++|++++|.+....|. + ..+++|++|++++|......+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45566666555431 111 22346688888888877766665 4 778888888888877654333 23456
Q ss_pred CCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcc--c-----CccccCcceeeccccCccccCcc----cccC
Q 039311 431 LNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMS--F-----PELSCNIEELSLDGTAIQEFPSS----IERL 498 (909)
Q Consensus 431 L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~--l-----p~~~~~L~~L~L~~~~i~~lp~~----i~~l 498 (909)
+++|++|++++|......+..+ ++++|++|++++|...+. + .....+|++|++++|.++.+|.. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 7788888888765433333333 577777777777654321 1 11222333444444443332221 2333
Q ss_pred CCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCcc
Q 039311 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
++|++|+|++|......|..++. +
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~--------------------------------------------------------~ 247 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPR--------------------------------------------------------C 247 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSS--------------------------------------------------------C
T ss_pred CCCCEEECCCCCCCccchhhHHh--------------------------------------------------------c
Confidence 44444444443322222221111 1
Q ss_pred CCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 579 FGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
..+++|++|+|++|.+..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 123566666666666666665553 567777777777666654 5566677777776654
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.8e-17 Score=186.34 Aligned_cols=248 Identities=16% Similarity=0.114 Sum_probs=127.8
Q ss_pred EcCCCCccccccccccCCCCCEEecCCCcCCCcCC-----CCCccccccccccccccc---cceeccc-------ccCCC
Q 039311 368 EMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-----DLSLATNLESLNFQGCTC---LLETHSS-------IQYLN 432 (909)
Q Consensus 368 ~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~c~~---l~~~p~~-------i~~L~ 432 (909)
.+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|++++|.. ...+|.. +..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 33334444455555556666666666655433211 144555566666555421 1222332 35666
Q ss_pred cccEeccccccCcc----ccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccC---------
Q 039311 433 KLVVLNLKHCRSLT----SLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERL--------- 498 (909)
Q Consensus 433 ~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l--------- 498 (909)
+|++|+|++|..-. .+|..+ .+++|++|++++|......+. .++..+..+
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~----------------~l~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA----------------KIARALQELAVNKKAKNA 158 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH----------------HHHHHHHHHHHHHHHHTC
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH----------------HHHHHHHHHhhhhhcccC
Confidence 67777776654222 233333 366666666666543211110 111112222
Q ss_pred CCCCEEeccCCCCC-CcCc---ccccCCCCCCeeecccccccccccCccee------ecCccccccCCCCeeecCccccc
Q 039311 499 SSLILLNLGNCLRL-EGLP---SKICKLKSLERLNLAEALKELKAEGIAIR------EVPSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 499 ~~L~~L~L~~c~~l-~~lp---~~l~~L~~L~~L~l~~~l~~L~l~~~~~~------~lp~~i~~l~~L~~L~l~~~~~~ 568 (909)
++|++|++++|... ..+| ..+..+++|+.|++.. |.+. -+|..+..+++|+.|++++|...
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~---------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ---------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS---------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC---------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 44444444444332 1222 2233444444444422 1221 12224556666666666653221
Q ss_pred ccc-ccccCccCCCCCCCEEecCCCCCCC-----ccccc--CCCCCCcEEECCCCCCee-----cchhh-ccCCCCCEEe
Q 039311 569 EQM-GLLLPISFGLTSLTYLRLTDCGIIE-----LPECL--GQLSSRSILLLEKNNFER-----IPESI-IQLSHLFSLG 634 (909)
Q Consensus 569 ~~~-~~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~i-~~l~~L~~L~ 634 (909)
... ......+..+++|+.|+|++|.+.. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 100 1112234567788888888888774 46666 448888888888888886 77777 5688888888
Q ss_pred ecCCCC
Q 039311 635 ISHCER 640 (909)
Q Consensus 635 L~~c~~ 640 (909)
+++|+.
T Consensus 310 l~~N~l 315 (386)
T 2ca6_A 310 LNGNRF 315 (386)
T ss_dssp CTTSBS
T ss_pred ccCCcC
Confidence 888753
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=4.5e-15 Score=159.62 Aligned_cols=191 Identities=20% Similarity=0.240 Sum_probs=116.9
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
+.+++.++++++.++.+|..+. .++++|++++|.+..++ ..+..+++|++|+|++|.+.. ++..+.+++|++|++++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSH 86 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCS
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCC
Confidence 4567778888888888887775 68888888888888775 567888888888888887543 44457777888888887
Q ss_pred ccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc-
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS- 494 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~- 494 (909)
|.. ..+|..+..+++|++|++++|. ++.+|.. + ++++|+.|++++| .+..+|..
T Consensus 87 N~l-~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~ 143 (290)
T 1p9a_G 87 NQL-QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN---------------------ELKTLPPGL 143 (290)
T ss_dssp SCC-SSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS---------------------CCCCCCTTT
T ss_pred CcC-CcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC---------------------CCCccChhh
Confidence 653 4667677777777777777753 4444432 2 3555555555553 33333332
Q ss_pred cccCCCCCEEeccCCCCCCcCcc-cccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPS-KICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFES 564 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 564 (909)
+..+++|+.|+|++|... .+|. .+..+++|+.|++ ++|.+..+|..+..+.+|+.|++.+
T Consensus 144 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L---------~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL---------QENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEEC---------CSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred cccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEEC---------CCCcCCccChhhcccccCCeEEeCC
Confidence 345555555655555332 3332 2344555555544 3334444444444444444444443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1e-15 Score=159.87 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=114.7
Q ss_pred CCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceec-cc
Q 039311 352 LKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETH-SS 427 (909)
Q Consensus 352 l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~ 427 (909)
++.+|. + ..+|++|++++|+++.+|. .+..+++|++|++++|..++.++ .+..+++|++|++++|..+..++ ..
T Consensus 23 l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 667777 3 3478888888888888775 57778888888888886344444 37788888888888744444554 46
Q ss_pred ccCCCcccEeccccccCccccCccccCCcCc---EEEccCCCCCcccCc----cccCcc-eeeccccCccccCcccccCC
Q 039311 428 IQYLNKLVVLNLKHCRSLTSLSTSIHLGSLK---KLILSGCSNLMSFPE----LSCNIE-ELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 428 i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~---~L~Ls~c~~l~~lp~----~~~~L~-~L~L~~~~i~~lp~~i~~l~ 499 (909)
++.+++|++|++++|. ++.+|....+++|+ .|++++|..+..+|. ...+|+ .|++++|.++.+|......+
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 7788888888888854 55677634566666 777777644554443 133555 66666666666666544446
Q ss_pred CCCEEeccCCCCCCcCc-ccccCC-CCCCeeec
Q 039311 500 SLILLNLGNCLRLEGLP-SKICKL-KSLERLNL 530 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp-~~l~~L-~~L~~L~l 530 (909)
+|+.|++++|..+..+| ..+..+ ++|+.|++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 66777776664344443 334555 55555554
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=1.4e-17 Score=198.43 Aligned_cols=337 Identities=16% Similarity=0.070 Sum_probs=219.8
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCC-CCCCccEEEeeCCCCCc-----cCCCC-CCCCeeEEEcCCCC--cc--ccc
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGL-ESTELRYLQWHGCPLKS-----LSSKI-PPENLVSLEMPHSS--IK--QLW 378 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l-~~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~--i~--~lp 378 (909)
.+++|+.|++.++.... ........ .+++|++|++++|.+.. ++... .+.+|++|+++++. +. .++
T Consensus 128 ~~~~L~~L~L~~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFS---TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HCTTCCEEEEESCEEEE---HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred hCCCCcEEeCCCcCCCC---HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 68999999999763111 00011111 16899999999987543 33333 56799999999986 22 233
Q ss_pred cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc------cceecccccCCCcccEe-ccccccCccccCc
Q 039311 379 KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC------LLETHSSIQYLNKLVVL-NLKHCRSLTSLST 450 (909)
Q Consensus 379 ~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~------l~~~p~~i~~L~~L~~L-~L~~c~~l~~lp~ 450 (909)
.-+..+++|++|++++|...+.+|. +..+++|++|++..|.. ...++..++.+++|+.| .+.+.. ...++.
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~ 283 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPA 283 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHH
Confidence 3345679999999999865555554 67889999999876642 33455678889999998 454422 344554
Q ss_pred cc-cCCcCcEEEccCCCCCcc-c---CccccCcceeeccccCcc--ccCcccccCCCCCEEeccCC--------CCCCc-
Q 039311 451 SI-HLGSLKKLILSGCSNLMS-F---PELSCNIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNC--------LRLEG- 514 (909)
Q Consensus 451 ~~-~l~~L~~L~Ls~c~~l~~-l---p~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c--------~~l~~- 514 (909)
.. .+++|+.|++++|..... + ....++|++|+++++ +. .++.....+++|+.|++.+| .....
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 44 589999999999983221 1 224578999999988 43 34444456899999999543 22221
Q ss_pred Ccccc-cCCCCCCeeecccccccccccCcceee-cCccc-cccCCCCeeecCcc---cccccccc----ccCc-cCCCCC
Q 039311 515 LPSKI-CKLKSLERLNLAEALKELKAEGIAIRE-VPSSI-ACLKNLGRLSFESF---MCHEQMGL----LLPI-SFGLTS 583 (909)
Q Consensus 515 lp~~l-~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i-~~l~~L~~L~l~~~---~~~~~~~~----~~~~-~~~l~~ 583 (909)
-...+ ..+++|+.|.+.. +.++. .+..+ ..+++|+.|+++.+ .|+.+... .++. +..+++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~---------~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFC---------RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEE---------SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred HHHHHHHhchhHHHHHHhc---------CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 11112 3478888885522 22221 11223 35889999999821 25555522 1111 445789
Q ss_pred CCEEecCCCCCCC-cccccC-CCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCCCCcc----cCCCCCCcCcee
Q 039311 584 LTYLRLTDCGIIE-LPECLG-QLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCERLHS----LPELPCDLSDIE 655 (909)
Q Consensus 584 L~~L~Ls~~~l~~-lp~~l~-~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~----lp~l~~sL~~L~ 655 (909)
|+.|+|++ .+.+ .+..+. .+++|+.|+|++|.++ .++.....+++|+.|+|++|+.-.. +....++|+.|+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 99999987 5553 333444 3889999999999986 3333337799999999999986221 222356899999
Q ss_pred cccCcc
Q 039311 656 AHCCSS 661 (909)
Q Consensus 656 i~~C~~ 661 (909)
+++|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 999975
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=4.1e-15 Score=161.53 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=99.8
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
.+|++|+++++.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|.+ +.++.+..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCC
Confidence 3455555555555555543355666666666666666655 66666666666666653 334556666666666666654
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc--cccCcceeeccccCccccCccccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE--LSCNIEELSLDGTAIQEFPSSIER 497 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~ 497 (909)
.. .++ .++.+++|++|++++|. ++.++....+++|+.|++++|.. ..++. .+.+|+.|++++|.+..++. +..
T Consensus 119 l~-~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~ 193 (308)
T 1h6u_A 119 IT-DVT-PLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISDISP-LAS 193 (308)
T ss_dssp CC-CCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CC-Cch-hhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcC-CCChhhcCCCCCCEEECCCCccCcChh-hcC
Confidence 32 233 25666666666666643 44444433456666666665432 22221 22345555555555555544 556
Q ss_pred CCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 498 LSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
+++|+.|++++|... .++ .+..+++|+.|++
T Consensus 194 l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 194 LPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTL 224 (308)
T ss_dssp CTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEE
T ss_pred CCCCCEEEccCCccC-ccc-cccCCCCCCEEEc
Confidence 666666666666433 233 2555555555555
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=6e-15 Score=163.37 Aligned_cols=232 Identities=20% Similarity=0.247 Sum_probs=141.2
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecc-cccCCCcccEeccccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLKHC 442 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~-~i~~L~~L~~L~L~~c 442 (909)
++++-++++++++|.++ .++++.|+|++|++....++ |.++++|++|+|++|.....+|. .+..+++|+.+...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667778888888766 36788888888875544443 78888888888888877666664 4567777776555555
Q ss_pred cCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCccc-
Q 039311 443 RSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSK- 518 (909)
Q Consensus 443 ~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~- 518 (909)
+.++.++... ++++|++|++++ |.+..+|. .+....++..|++.++..+..+|..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISN---------------------TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEE---------------------ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred CcccccCchhhhhccccccccccc---------------------cccccCCchhhcccchhhhhhhccccccccccccc
Confidence 5566664432 356666665555 33333332 2334445566666555444444432
Q ss_pred ccCCC-CCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCC-CCCCC
Q 039311 519 ICKLK-SLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTD-CGIIE 596 (909)
Q Consensus 519 l~~L~-~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~ 596 (909)
+..+. .|+.|++ ++|.++.+|.. .....+|+.|++++ |.+..
T Consensus 149 f~~~~~~l~~L~L---------~~N~i~~i~~~---------------------------~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 149 FVGLSFESVILWL---------NKNGIQEIHNS---------------------------AFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp STTSBSSCEEEEC---------CSSCCCEECTT---------------------------SSTTEEEEEEECTTCTTCCC
T ss_pred hhhcchhhhhhcc---------ccccccCCChh---------------------------hccccchhHHhhccCCcccC
Confidence 22221 2223322 33334444332 22345666677664 44556
Q ss_pred ccc-ccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC--CCCcCceecc
Q 039311 597 LPE-CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL--PCDLSDIEAH 657 (909)
Q Consensus 597 lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~ 657 (909)
+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+ +++|+.+++.
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred CCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 664 457788888888888888888753 3677888888888888888753 3456666554
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=2.9e-17 Score=184.72 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=155.2
Q ss_pred CCCccCCCC-CCCCeeEEEcCCCCccc-----cccccccCCCCCEEecCCCcCC---CcCCC--------CCcccccccc
Q 039311 351 PLKSLSSKI-PPENLVSLEMPHSSIKQ-----LWKGVQRLVNLKHINLSHSEHL---TKIPD--------LSLATNLESL 413 (909)
Q Consensus 351 ~l~~lp~~~-~~~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~~~~l---~~~p~--------l~~l~~L~~L 413 (909)
.+..++..+ .+.+|++|+|++|.+.. ++..+..+++|++|+|++|... ..+|. +..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 334444444 45678888888887764 4455778888888888886422 23332 3677889999
Q ss_pred ccccccccc----eecccccCCCcccEeccccccCccc----cCccc-cC---------CcCcEEEccCCCCC-cccCcc
Q 039311 414 NFQGCTCLL----ETHSSIQYLNKLVVLNLKHCRSLTS----LSTSI-HL---------GSLKKLILSGCSNL-MSFPEL 474 (909)
Q Consensus 414 ~L~~c~~l~----~~p~~i~~L~~L~~L~L~~c~~l~~----lp~~~-~l---------~~L~~L~Ls~c~~l-~~lp~~ 474 (909)
+|++|.... .+|..+..+++|++|+|++|..-.. ++..+ .+ ++|++|++++|... ..++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~-- 177 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK-- 177 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--
Confidence 999887665 4677888899999999999763211 22111 12 67777777776533 1121
Q ss_pred ccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC-----cCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 475 SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE-----GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 475 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~-----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
.+...+..+++|+.|++++|.... ..|..+..+++|+.|++..|- +.......+|.
T Consensus 178 ---------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~----l~~~g~~~l~~ 238 (386)
T 2ca6_A 178 ---------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT----FTHLGSSALAI 238 (386)
T ss_dssp ---------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC----CHHHHHHHHHH
T ss_pred ---------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC----CCcHHHHHHHH
Confidence 111344556666666666664331 122245556666666553220 00011144566
Q ss_pred cccccCCCCeeecCccccccccccccC-cc--CCCCCCCEEecCCCCCCC-----ccccc-CCCCCCcEEECCCCCCeec
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLP-IS--FGLTSLTYLRLTDCGIIE-----LPECL-GQLSSRSILLLEKNNFERI 620 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~--~~l~~L~~L~Ls~~~l~~-----lp~~l-~~l~~L~~L~L~~n~l~~l 620 (909)
.+..+++|+.|++++|.........++ .+ ..+++|+.|+|++|.+.. +|..+ .++++|+.|++++|.++..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 677777788888777332221111112 23 347899999999999996 88887 6689999999999999844
Q ss_pred c
Q 039311 621 P 621 (909)
Q Consensus 621 p 621 (909)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=2.2e-15 Score=160.57 Aligned_cols=200 Identities=19% Similarity=0.144 Sum_probs=111.1
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
.+|+.|++.++.++.++....+.+|++|++++|.+..++ .+..+++|++|++++|.+....+. ++.+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 445555555555555544345555666666655555543 455566666666666554433333 455666666666665
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCc---cccCcceeeccccCccccCc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGTAIQEFPS 493 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~lp~ 493 (909)
......+..++.+++|++|++++| .++.++... ++++|+.|++++|......+. .+.+|+.|++++|.+..+|.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 544333334556666666666664 344444322 456666666666543322221 23456677777777776665
Q ss_pred c-cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCC
Q 039311 494 S-IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKN 556 (909)
Q Consensus 494 ~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~ 556 (909)
. ++.+++|+.|++++|.... .+++|+.|++..+ ...+.+|.+++.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n--------~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN--------KHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHH--------HTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHH--------hCCCcccCcccccCC
Confidence 4 6788899999998886543 3455666655322 122356666665544
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=7e-15 Score=156.71 Aligned_cols=223 Identities=20% Similarity=0.172 Sum_probs=142.1
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l 421 (909)
+..+.+.++.+..+.....+.+|+.|+++++.+..++ ++..+++|++|++++|.+. .++.+..+++|++|++++|...
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccC
Confidence 3344445555555544446789999999999999875 4889999999999999854 4677999999999999999766
Q ss_pred ceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
...+..++.+++|++|++++|. ++.++.. + ++++|++|++++|... .+|. ..++.++
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-------------------~~~~~l~ 157 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPK-------------------GVFDKLT 157 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCT-------------------TTTTTCT
T ss_pred ccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccC-ccCH-------------------HHhccCc
Confidence 5555668999999999999975 5566554 3 5888888888886432 3221 1134444
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCcc
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
+|+.|++++|......+..++.+++|+.|++ ++|.+..++. .+..+++|+.|++++|.. .
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L---------~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----------~ 218 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRL---------YQNQLKSVPDGVFDRLTSLQYIWLHDNPW----------D 218 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------CSSCCSCCCTTTTTTCTTCCEEECCSSCB----------C
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEEC---------CCCcCCccCHHHHhCCcCCCEEEccCCCc----------c
Confidence 5555555554333222233344444444444 2233333333 245555566666555221 1
Q ss_pred CCCCCCCEEecCCCCCC-CcccccCCCCC
Q 039311 579 FGLTSLTYLRLTDCGII-ELPECLGQLSS 606 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~ 606 (909)
+.+++|+.|++..|.+. .+|.+++.++.
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 23456666666666665 46666655543
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=3.1e-16 Score=174.61 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=34.1
Q ss_pred CCCCEEecCCCCCCCc-----ccccCCCCCCcEEECCCCCCe--------ecchhhccCCCCCEEeecCCC
Q 039311 582 TSLTYLRLTDCGIIEL-----PECLGQLSSRSILLLEKNNFE--------RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~l-----p~~l~~l~~L~~L~L~~n~l~--------~lp~~i~~l~~L~~L~L~~c~ 639 (909)
++|+.|+|++|.+.+. ...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3566666666666542 233456666777777766522 333445566667777777664
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=5.2e-14 Score=148.01 Aligned_cols=123 Identities=23% Similarity=0.254 Sum_probs=93.1
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
..+.++++++.++.+|..+. .+|+.|++++|.+..++. .+..+++|++|+|++|.+....|. +..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 46778888888999988776 588999999999888764 578889999999999887666665 788888888888887
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGC 465 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c 465 (909)
......+..++.+++|++|++++| .++.++... ++++|+.|++++|
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC
Confidence 765544556778888888888885 455555532 3666666666664
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=2.4e-14 Score=167.20 Aligned_cols=189 Identities=19% Similarity=0.214 Sum_probs=145.3
Q ss_pred CCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEec
Q 039311 313 KLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINL 392 (909)
Q Consensus 313 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L 392 (909)
+|+.|++.+|.+.+.+ ..+ .++|++|++++|.++.+| -.+.+|++|++++|.+..+|. +.. +|++|+|
T Consensus 60 ~L~~L~Ls~n~L~~lp------~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP------DNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCC------SCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccC------HhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 7888888877654322 212 367899999999988888 346789999999999988887 655 8999999
Q ss_pred CCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC
Q 039311 393 SHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP 472 (909)
Q Consensus 393 s~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp 472 (909)
++|.+.. +|. .+++|++|++++|... .+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|. +..+|
T Consensus 128 s~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L~Ls~N~-L~~lp 196 (571)
T 3cvr_A 128 DNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ESLEALDVSTNL-LESLP 196 (571)
T ss_dssp CSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECCSSC-CSSCC
T ss_pred CCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hh-CCCCEEECcCCC-CCchh
Confidence 9887655 666 6888999999987654 4665 57889999999864 666777 55 889999999874 44777
Q ss_pred ccccCc-------ceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCC
Q 039311 473 ELSCNI-------EELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 473 ~~~~~L-------~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
....+| +.|+|++|.|+.+|..+..+++|+.|+|++|...+.+|..++.+..
T Consensus 197 ~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 197 AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 644567 8999999999999998888999999999999888878877665543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=5.9e-14 Score=163.95 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=114.9
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
+|+.|+++++.++.+|..+. .+|++|++++|.|+.+| ..+++|++|++++|.+.. +|.+.. +|++|++++|..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP-PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC
Confidence 78899999999988888764 78999999999998888 457889999999887655 665544 888888888764
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
.. +|. .+++|++|++++|. ++.+|. .+++|+.|++++|.. ..+|....+|+.|+|++|.|+.+|. +.. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L-~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~ 201 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLESLPA-VPV--R 201 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCC-CC----
T ss_pred CC-CCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCC-CCcchhhCCCCEEECcCCCCCchhh-HHH--h
Confidence 43 665 57778888887754 555665 566777777777543 3355433556666666666666665 433 4
Q ss_pred C-------CEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 501 L-------ILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 501 L-------~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
| +.|+|++|.. ..+|..+..+++|+.|++
T Consensus 202 L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRI-THIPENILSLDPTCTIIL 237 (571)
T ss_dssp ------CCEEEECCSSCC-CCCCGGGGGSCTTEEEEC
T ss_pred hhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEe
Confidence 4 6666666532 345555555555555554
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.6e-13 Score=144.35 Aligned_cols=170 Identities=22% Similarity=0.278 Sum_probs=107.0
Q ss_pred CcEEEccCCCCCcccCc-cccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccc
Q 039311 457 LKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEAL 534 (909)
Q Consensus 457 L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l 534 (909)
.+.++++++ .+..+|. ...+++.|++++|.+..++. .+.++++|++|+|++|......|..+..+++|+.|++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L---- 90 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL---- 90 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC----
T ss_pred CeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC----
Confidence 344444442 2333433 23456666666677765544 4777788888888887666555556677777777766
Q ss_pred ccccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEEC
Q 039311 535 KELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLL 612 (909)
Q Consensus 535 ~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L 612 (909)
+++.+..+|. .+..+++|+.|++++|. +.......+..+++|+.|+|++|.+..+|. .++.+++|+.|+|
T Consensus 91 -----~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 91 -----ANNQLASLPLGVFDHLTQLDKLYLGGNQ---LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp -----TTSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -----CCCcccccChhHhcccCCCCEEEcCCCc---CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 3445555553 35667777777777632 222222224567777777777777777655 5677777777777
Q ss_pred CCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 613 EKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 613 ~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
++|+++.+|. .+..+++|+.|+|++|+
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 7777776654 56677777777777764
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=158.11 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=98.8
Q ss_pred ccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee---c--CccccccCCCCeeecCccccccc
Q 039311 496 ERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE---V--PSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~---l--p~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
..+++|++|++++|......|..++.+++|+.|+++.| .+.. + +..++.+++|++|++++|.....
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N---------~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN---------PGLGERGLMAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC---------TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC---------CCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence 35666666666666555555555666666666666332 2111 2 12235667777777776332211
Q ss_pred cccccCc-cCCCCCCCEEecCCCCCCCc-ccccCCC---CCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 571 MGLLLPI-SFGLTSLTYLRLTDCGIIEL-PECLGQL---SSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 571 ~~~~~~~-~~~l~~L~~L~Ls~~~l~~l-p~~l~~l---~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
.. .... +..+++|++|+|++|.+... |..+..+ ++|+.|+|++|+++.+|..+. ++|+.|+|++|+ ++.+|
T Consensus 213 ~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~ 288 (310)
T 4glp_A 213 TG-VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAP 288 (310)
T ss_dssp HH-HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCC
T ss_pred HH-HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCc
Confidence 11 1111 34578999999999999975 7777666 799999999999999998774 899999999974 55554
Q ss_pred --CCCCCcCceecccC
Q 039311 646 --ELPCDLSDIEAHCC 659 (909)
Q Consensus 646 --~l~~sL~~L~i~~C 659 (909)
..+++|+.|++.+.
T Consensus 289 ~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 QPDELPEVDNLTLDGN 304 (310)
T ss_dssp CTTSCCCCSCEECSST
T ss_pred hhhhCCCccEEECcCC
Confidence 34557777777664
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=1.6e-15 Score=168.77 Aligned_cols=253 Identities=16% Similarity=0.134 Sum_probs=124.2
Q ss_pred EEeeCCCCCccCCCC--CCCCeeEEEcCCCCccccc-----cccccCC-CCCEEecCCCcCCCcCCC-CCcc-----ccc
Q 039311 345 LQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLW-----KGVQRLV-NLKHINLSHSEHLTKIPD-LSLA-----TNL 410 (909)
Q Consensus 345 L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~Ls~~~~l~~~p~-l~~l-----~~L 410 (909)
++++.+.+....+.+ ...+|++|++++|.+...+ ..+..++ +|++|+|++|.+....+. +..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344555544332222 2344777777777666554 4455666 677777777655444332 3332 666
Q ss_pred cccccccccccceeccccc----CC-CcccEeccccccCccccCccc------c-CCcCcEEEccCCCCCcccCccccCc
Q 039311 411 ESLNFQGCTCLLETHSSIQ----YL-NKLVVLNLKHCRSLTSLSTSI------H-LGSLKKLILSGCSNLMSFPELSCNI 478 (909)
Q Consensus 411 ~~L~L~~c~~l~~~p~~i~----~L-~~L~~L~L~~c~~l~~lp~~~------~-l~~L~~L~Ls~c~~l~~lp~~~~~L 478 (909)
++|++++|......+..+. .+ ++|++|++++|. ++..+... . .++|++|++++|.....-+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------ 155 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------ 155 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence 6666666655444443332 23 566666666654 33332211 1 2355555555543221100
Q ss_pred ceeeccccCccccCcccccCC-CCCEEeccCCCCCCcCccc----ccCC-CCCCeeecccccccccccCcceeecCcccc
Q 039311 479 EELSLDGTAIQEFPSSIERLS-SLILLNLGNCLRLEGLPSK----ICKL-KSLERLNLAEALKELKAEGIAIREVPSSIA 552 (909)
Q Consensus 479 ~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~----l~~L-~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~ 552 (909)
..++..+..++ +|++|+|++|......+.. +..+ ++|+.|+++.|- +.......++..+.
T Consensus 156 ----------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 156 ----------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIFS 221 (362)
T ss_dssp ----------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHH
T ss_pred ----------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHHh
Confidence 02333333333 5555555555433333222 2223 245555443220 01111112444444
Q ss_pred cc-CCCCeeecCccccccccccccC-ccCCCCCCCEEecCCCCCC--------CcccccCCCCCCcEEECCCCCCe
Q 039311 553 CL-KNLGRLSFESFMCHEQMGLLLP-ISFGLTSLTYLRLTDCGII--------ELPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 553 ~l-~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~~l~--------~lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
.+ ++|+.|++++|.........+. .+..+++|+.|+|++|.+. .++..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 42 4677777766332221111111 1345677888888877633 24456677788888888888776
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=3.7e-14 Score=152.56 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSE 396 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~ 396 (909)
.+|++|+++++.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 3445555555554444432244444444444444444443 4444444444444443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=2.5e-13 Score=146.04 Aligned_cols=134 Identities=25% Similarity=0.299 Sum_probs=88.4
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcc
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESF 565 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 565 (909)
|.+..++. +..+++|+.|++++|.. ..+|. ++.+++|+.|++ ++|.+..+ ..+..+++|+.|++++|
T Consensus 78 n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L---------~~n~i~~~-~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 78 NKLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSL---------EHNGISDI-NGLVHLPQLESLYLGNN 144 (291)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEEC---------TTSCCCCC-GGGGGCTTCCEEECCSS
T ss_pred CccCCCcc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEEC---------CCCcCCCC-hhhcCCCCCCEEEccCC
Confidence 33344433 55555555555555532 22332 555555555554 23333333 23566677777777763
Q ss_pred ccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.... ++.+..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 145 ~l~~-----~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 145 KITD-----ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCC-----CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCc-----chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 3222 2456678889999999999888776 8889999999999999998874 8889999999999874
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.1e-13 Score=139.71 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=90.2
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC-CCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-DLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 417 (909)
+.+|++|+++++.+..+|....+.+|++|++++|.+..++ .+..+++|++|++++|.+....| .++.+++|++|++++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 3456666666666666663335566677777666665553 46667777777777766554333 466677777777777
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCccccc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIER 497 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~ 497 (909)
|......+..++.+++|++|++++|..++.+|...++++|+.|++++ |.+..++ .+..
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~---------------------n~i~~~~-~l~~ 179 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF---------------------DGVHDYR-GIED 179 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTT---------------------BCCCCCT-TGGG
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCC---------------------CCCcChH-Hhcc
Confidence 66655556666667777777777665455555433455555555554 3344444 4556
Q ss_pred CCCCCEEeccCCC
Q 039311 498 LSSLILLNLGNCL 510 (909)
Q Consensus 498 l~~L~~L~L~~c~ 510 (909)
+++|+.|++++|.
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 6666666666654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=5.2e-14 Score=166.24 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
.+|+.|+++++.+..+|....+.+|+.|+|++|.+..++. +..+++|+.|+|++|.+ ..+|.+..+++|++|+|++
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecC
Confidence 3444444444444444432234444444444444444433 34444444444444432 2233333334444444433
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.7e-15 Score=176.18 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=106.5
Q ss_pred CccccccccccccccccceecccccCCCcccEecccccc-------------CccccCccc-cCCcCcEEE-ccCCCCCc
Q 039311 405 SLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR-------------SLTSLSTSI-HLGSLKKLI-LSGCSNLM 469 (909)
Q Consensus 405 ~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~-------------~l~~lp~~~-~l~~L~~L~-Ls~c~~l~ 469 (909)
..+++|+.|+|++|. +..+|.+|+.+++|+.|++++|. .....|..+ ++++|+.|+ ++.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-Y-- 421 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-H--
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-c--
Confidence 344555555555543 33555555555555555554432 112222222 244455444 2221 1
Q ss_pred ccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 470 SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 470 ~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
+.+|+.+.+.+|.+..+|.. .|+.|+|++|. +..+|. ++.+++|+.|++ ++|.+..+|.
T Consensus 422 -----~~~L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~L---------s~N~l~~lp~ 480 (567)
T 1dce_A 422 -----LDDLRSKFLLENSVLKMEYA-----DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDL---------SHNRLRALPP 480 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHT-----TCSEEECTTSC-CSSCCC-GGGGTTCCEEEC---------CSSCCCCCCG
T ss_pred -----cchhhhhhhhcccccccCcc-----CceEEEecCCC-CCCCcC-ccccccCcEeec---------Ccccccccch
Confidence 11233334444444444321 35666666653 333554 555555555554 3344555666
Q ss_pred cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc--ccccCCCCCCcEEECCCCCCeecchhh---
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL--PECLGQLSSRSILLLEKNNFERIPESI--- 624 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~i--- 624 (909)
.++.+++|+.|++++|... + +|.+..+++|+.|+|++|.+..+ |..++.+++|+.|+|++|.++.+|..+
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~---~--lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l 555 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALE---N--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555 (567)
T ss_dssp GGGGCTTCCEEECCSSCCC---C--CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred hhhcCCCCCEEECCCCCCC---C--CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence 6666666666666653222 1 23556677777777777777765 677777777777777777777665432
Q ss_pred -ccCCCCCEEee
Q 039311 625 -IQLSHLFSLGI 635 (909)
Q Consensus 625 -~~l~~L~~L~L 635 (909)
..+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 33677776653
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=2.6e-13 Score=160.19 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=81.2
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCC
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L 387 (909)
..+.+|+.|++.++.+... ..+. +++|+.|++++|.+..+|....+.+|+.|+|++|.+..++ .+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-------TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCCC-------hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 4556666666665543221 1233 5667777777776666665336666777777777666655 46666777
Q ss_pred CEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+.|+|++|.+. .++.+..+++|+.|+|++|.... + ..++.+++|+.|+|++|. +..++....+++|+.|+|++
T Consensus 112 ~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 112 KSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp CEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCS
T ss_pred CEEEecCCCCC-CCccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcC
Confidence 77777766543 34556666666666666654332 2 345556666666665543 33333322344444444444
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=5.3e-13 Score=134.68 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred CcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee-cCccccccC
Q 039311 477 NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE-VPSSIACLK 555 (909)
Q Consensus 477 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i~~l~ 555 (909)
+|+.|++++|.+..+| .+..+++|++|++++| ....++ .+..+++|+.|++. ++.+.. .+..+..++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~---------~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIM---------GKDVTSDKIPNLSGLT 112 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEE---------CTTCBGGGSCCCTTCT
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeE---------CCccCcccChhhcCCC
Confidence 4555555556666676 5778888888888887 334443 57777777777763 344443 456677778
Q ss_pred CCCeeecCccccccccccccCccCCCCCCCEEecCCCC-CCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEe
Q 039311 556 NLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCG-IIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLG 634 (909)
Q Consensus 556 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 634 (909)
+|+.|++++| .+.+..+..+..+++|+.|++++|. +.++| .+..+++|+.|++++|.++.++ .+..+++|+.|+
T Consensus 113 ~L~~L~Ls~n---~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHS---AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSS---BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred CCCEEEecCC---ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence 8888888763 2333334456678888888888887 66776 6788888888888888888877 778888888888
Q ss_pred ecCCC
Q 039311 635 ISHCE 639 (909)
Q Consensus 635 L~~c~ 639 (909)
+++++
T Consensus 188 l~~N~ 192 (197)
T 4ezg_A 188 AFSQT 192 (197)
T ss_dssp ECBC-
T ss_pred eeCcc
Confidence 88864
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.1e-12 Score=133.63 Aligned_cols=156 Identities=21% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLN 414 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 414 (909)
+.+|++|+++++.++.+|... .+.+|++|++++|.++.++.. +..+++|++|++++|.+....+. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 346677777777776666543 566777777777777766644 45677777777777765544443 56677777777
Q ss_pred cccccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcc-cc
Q 039311 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQ-EF 491 (909)
Q Consensus 415 L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~-~l 491 (909)
+++|......+..++.+++|++|++++|. ++.++.. + .+++|+.|++++|...... .+++.|++..|.+. .+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCCT----TTTHHHHHHHHHCTTTB
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecCC----CCHHHHHHHHHhCCcee
Confidence 77765443333345667777777777753 4444443 2 4667777777665433222 23445555554444 44
Q ss_pred CcccccCC
Q 039311 492 PSSIERLS 499 (909)
Q Consensus 492 p~~i~~l~ 499 (909)
|.+++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 54444443
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=2.4e-15 Score=176.52 Aligned_cols=214 Identities=19% Similarity=0.208 Sum_probs=128.3
Q ss_pred CCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEec-c
Q 039311 361 PENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLN-L 439 (909)
Q Consensus 361 ~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~-L 439 (909)
.++|+.|+|++|.++.+|.+++++++|+.|+++++..+...| . .+..+......|..++.+++|+.|+ +
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~-ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------L-LMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------H-HHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------H-HHHhcccccCCHHHHHHHHhcccCcch
Confidence 445556666666666666666666666666654432111111 0 0011123445667778888888887 4
Q ss_pred ccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccc
Q 039311 440 KHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 440 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+. ..+.. |+.+.++++. +..+|. ..|+.|++++|.++.+|. ++.+++|+.|+|++|... .+|..+
T Consensus 418 ~~-n~~~~---------L~~l~l~~n~-i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 418 RA-AYLDD---------LRSKFLLENS-VLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp GH-HHHHH---------HHHHHHHHHH-HHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred hh-cccch---------hhhhhhhccc-ccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhh
Confidence 44 22222 2222222211 111111 135666677777777776 777888888888877544 777777
Q ss_pred cCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccc-cCccCCCCCCCEEecCCCCCCCcc
Q 039311 520 CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL-LPISFGLTSLTYLRLTDCGIIELP 598 (909)
Q Consensus 520 ~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~~~l~~lp 598 (909)
+.+++|+.|++ ++|.++.+| .++.+++|+.|++++| .+.+.. +..+..+++|+.|+|++|.+..+|
T Consensus 483 ~~l~~L~~L~L---------s~N~l~~lp-~l~~l~~L~~L~Ls~N---~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 483 AALRCLEVLQA---------SDNALENVD-GVANLPRLQELLLCNN---RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGCTTCCEEEC---------CSSCCCCCG-GGTTCSSCCEEECCSS---CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hcCCCCCEEEC---------CCCCCCCCc-ccCCCCCCcEEECCCC---CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 77777777776 455666676 6778888888888773 333333 445677888888888888888766
Q ss_pred ccc----CCCCCCcEEEC
Q 039311 599 ECL----GQLSSRSILLL 612 (909)
Q Consensus 599 ~~l----~~l~~L~~L~L 612 (909)
... ..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 543 33788888864
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.4e-12 Score=132.86 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=103.6
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++..++.+..+|..+. .+|++|++++|.+..++.. +..+++|++|++++|.+....+. +..+++|++|++++|..
T Consensus 10 ~~v~c~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 456777788888887663 5899999999999988765 57899999999999876654444 67888999999988765
Q ss_pred cceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc-ccc
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS-IER 497 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~-i~~ 497 (909)
....+..++.+++|++|++++|. ++.++... ++++|+.|++++| .+..+|.. +..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N---------------------~l~~~~~~~~~~ 146 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN---------------------QLKSVPDGVFDR 146 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---------------------CCSCCCTTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC---------------------ccceeCHHHhcc
Confidence 54444456788888888888854 55555432 4666666666664 44444443 566
Q ss_pred CCCCCEEeccCCCC
Q 039311 498 LSSLILLNLGNCLR 511 (909)
Q Consensus 498 l~~L~~L~L~~c~~ 511 (909)
+++|+.|++++|..
T Consensus 147 l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 147 LTSLQYIWLHDNPW 160 (208)
T ss_dssp CTTCCEEECCSCCB
T ss_pred CCCccEEEecCCCe
Confidence 67777777777643
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=3e-12 Score=132.37 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=98.3
Q ss_pred cceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcc-ccccCC
Q 039311 478 IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSS-IACLKN 556 (909)
Q Consensus 478 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~-i~~l~~ 556 (909)
.+.++.+++.+..+|..+. ++|+.|+|++|......|..+..+++|+.|++ ++|.+..+|.. +..+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---------~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYL---------GSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC---------CSSCCCCCCTTTTTTCTT
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEEC---------CCCCCCCcChhhcccCCC
Confidence 3455666666666666543 66777777777665555666666666666665 34455555543 466667
Q ss_pred CCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEee
Q 039311 557 LGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGI 635 (909)
Q Consensus 557 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 635 (909)
|+.|++++|. +.......+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|
T Consensus 90 L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 90 LTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCc---CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 7777776632 22222222556788888888888888888888888888888888888887764 4677788888888
Q ss_pred cCCC
Q 039311 636 SHCE 639 (909)
Q Consensus 636 ~~c~ 639 (909)
++|+
T Consensus 167 ~~N~ 170 (229)
T 3e6j_A 167 FGNP 170 (229)
T ss_dssp TTSC
T ss_pred eCCC
Confidence 8765
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=1.4e-12 Score=137.96 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEe
Q 039311 555 KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLG 634 (909)
Q Consensus 555 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 634 (909)
++|+.|++++|.... ++.+..+++|+.|++++|.+.+++ .+..+++|+.|++++|+++.+ ..+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~-----~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-----TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp SSCCEEECCSSCCSB-----SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred CcccEEEccCCccCC-----ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 556666666532221 234566778888888888887775 577788888888888888877 5677788888888
Q ss_pred ecCCC
Q 039311 635 ISHCE 639 (909)
Q Consensus 635 L~~c~ 639 (909)
+++|+
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 88764
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=4.9e-12 Score=129.92 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=95.0
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc--ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK--GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
+.++++++.++.+|..+ ...+++|++++|.++.++. .+..+++|++|+|++|.+....+. +..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46778888888888765 3456788888888887742 367788888888888876655553 7777777777777776
Q ss_pred ccceecccccCCCcccEeccccccCcccc-Cccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcccc-Ccccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSL-STSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEF-PSSIE 496 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~l-p~~i~ 496 (909)
.....+..++.+++|++|+|++|. ++.+ |..+ ++++|+.|++++ |.++.+ |..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~ 150 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD---------------------NQITTVAPGAFD 150 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT---------------------SCCCCBCTTTTT
T ss_pred cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC---------------------CcCCEECHHHhc
Confidence 555445556777777777777754 3333 3222 344444444444 444444 45566
Q ss_pred cCCCCCEEeccCCCC
Q 039311 497 RLSSLILLNLGNCLR 511 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~ 511 (909)
.+++|+.|++++|..
T Consensus 151 ~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 151 TLHSLSTLNLLANPF 165 (220)
T ss_dssp TCTTCCEEECCSCCE
T ss_pred CCCCCCEEEecCcCC
Confidence 677777777777644
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=5.6e-12 Score=129.46 Aligned_cols=144 Identities=20% Similarity=0.295 Sum_probs=84.0
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++++++.++.+|..+. .+|+.|++++|.|..++. .+..+++|++|+|++|.+....|+ +..+++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 456677777777776654 577777777777777764 566677777777777766555443 66666666666666543
Q ss_pred cceecc-cccCCCcccEeccccccCccccC-ccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccc
Q 039311 421 LLETHS-SIQYLNKLVVLNLKHCRSLTSLS-TSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIE 496 (909)
Q Consensus 421 l~~~p~-~i~~L~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~ 496 (909)
. .+|. .+..+++|++|+|++|. ++.++ ..+ ++++|+.|++ ++|.+..++. .+.
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L---------------------~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSL---------------------YDNKLQTIAKGTFS 149 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC---------------------CSSCCSCCCTTTTT
T ss_pred C-ccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEEC---------------------CCCcCCEECHHHHh
Confidence 3 3332 34555666666665543 33322 222 2344444433 3344444443 355
Q ss_pred cCCCCCEEeccCCC
Q 039311 497 RLSSLILLNLGNCL 510 (909)
Q Consensus 497 ~l~~L~~L~L~~c~ 510 (909)
.+++|+.|+|++|.
T Consensus 150 ~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 150 PLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEEeCCCC
Confidence 66666666666664
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=8.6e-12 Score=128.06 Aligned_cols=145 Identities=26% Similarity=0.326 Sum_probs=80.9
Q ss_pred EEEccCCCCCcccCc-cccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccccc
Q 039311 459 KLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKE 536 (909)
Q Consensus 459 ~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~ 536 (909)
.++++++ .+..+|. ...+++.|++++|.+..+|. .+..+++|+.|+|++|......|..+..+++|+.|++
T Consensus 15 ~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L------ 87 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL------ 87 (220)
T ss_dssp EEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC------
T ss_pred EEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC------
Confidence 4455442 3444443 23355666666666655544 4555556666666555444333444444444444444
Q ss_pred ccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCC
Q 039311 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKN 615 (909)
Q Consensus 537 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n 615 (909)
++|.+..+|. ..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|
T Consensus 88 ---s~N~l~~l~~--------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 88 ---YGNKITELPK--------------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ---CSSCCCCCCT--------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ---CCCcCCccCH--------------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 2222222222 1244566777777777777764 456677777777777777
Q ss_pred CCeecch-hhccCCCCCEEeecCCC
Q 039311 616 NFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 616 ~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
+++.++. .+..+++|+.|+|++|+
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 7776654 36667777777777764
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=7.5e-12 Score=138.99 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=86.8
Q ss_pred EEEccCCCCCcccCc-cccCcceeeccccCccccCcc-cc-cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccc
Q 039311 459 KLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSS-IE-RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALK 535 (909)
Q Consensus 459 ~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~ 535 (909)
.+++++ ..+..+|. ....++.|+|++|.+..++.. +. .+++|+.|+|++|......+..+..+++|+.|++
T Consensus 22 ~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L----- 95 (361)
T 2xot_A 22 ILSCSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL----- 95 (361)
T ss_dssp EEECCS-SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC-----
T ss_pred EEEeCC-CCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC-----
Confidence 444444 23344443 233466666777777766554 33 6777777777777554444455666666666665
Q ss_pred cccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccccc----CCCCCCcEE
Q 039311 536 ELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECL----GQLSSRSIL 610 (909)
Q Consensus 536 ~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l----~~l~~L~~L 610 (909)
++|.+..++. .+..+++|+.|++++|. +.......+..+++|+.|+|++|.+..+|..+ ..+++|+.|
T Consensus 96 ----s~N~l~~~~~~~~~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 96 ----SSNHLHTLDEFLFSDLQALEVLLLYNNH---IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp ----CSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred ----CCCcCCcCCHHHhCCCcCCCEEECCCCc---ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 3344444443 34555555555555522 22222223444555566666666555555443 345555566
Q ss_pred ECCCCCCeecch-hhccCCC--CCEEeecCC
Q 039311 611 LLEKNNFERIPE-SIIQLSH--LFSLGISHC 638 (909)
Q Consensus 611 ~L~~n~l~~lp~-~i~~l~~--L~~L~L~~c 638 (909)
+|++|+++.+|. .+..++. |+.|+|++|
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 666555555542 3344443 244444443
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=4e-12 Score=141.17 Aligned_cols=146 Identities=23% Similarity=0.322 Sum_probs=91.6
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cc-cCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQ-RLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~-~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
+.++++++.++.+|..+. ..++.|+|++|.|..++.. +. .+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 567778888888887653 4578888888888877755 33 778888888888776555554 7777777777777766
Q ss_pred ccceecccccCCCcccEeccccccCcccc-Cccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCccc--
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSL-STSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSI-- 495 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i-- 495 (909)
.....+..+..+++|++|+|++|. +..+ |..+ ++++|+.|+|++ |.+..+|..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~l~~~~~~ 157 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ---------------------NQISRFPVELIK 157 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS---------------------SCCCSCCGGGTC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC---------------------CcCCeeCHHHhc
Confidence 443334456677777777777654 3333 2222 345555554444 4444455443
Q ss_pred --ccCCCCCEEeccCCCC
Q 039311 496 --ERLSSLILLNLGNCLR 511 (909)
Q Consensus 496 --~~l~~L~~L~L~~c~~ 511 (909)
..+++|+.|+|++|..
T Consensus 158 ~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp ----CTTCCEEECCSSCC
T ss_pred CcccCCcCCEEECCCCCC
Confidence 4566666666666643
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1e-11 Score=128.44 Aligned_cols=148 Identities=22% Similarity=0.192 Sum_probs=92.9
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
-+.++.+++.+..+|..+. .+|++|+|++|.+..+ |..+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3456777777778877664 6788888888888776 45567778888888887775433333 5677777777777765
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-cccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIER 497 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~ 497 (909)
.....+..+..+++|++|++++|. ++.+|..+ .+++|+.|++++ |.+..+|. .+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ---------------------NQLKSIPHGAFDR 157 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCS---------------------SCCCCCCTTTTTT
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCC---------------------CcCCccCHHHHhC
Confidence 443333345666777777776643 44555444 345555554444 44444443 3566
Q ss_pred CCCCCEEeccCCCCC
Q 039311 498 LSSLILLNLGNCLRL 512 (909)
Q Consensus 498 l~~L~~L~L~~c~~l 512 (909)
+++|+.|++++|...
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 677777777776543
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=1e-11 Score=127.48 Aligned_cols=146 Identities=20% Similarity=0.167 Sum_probs=79.2
Q ss_pred cEEEccCCCCCcccCcc-ccCcceeeccccCccccCc--ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccc
Q 039311 458 KKLILSGCSNLMSFPEL-SCNIEELSLDGTAIQEFPS--SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEAL 534 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~-~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l 534 (909)
+.++++++. +..+|.. ...+++|++++|.+..++. .+..+++|+.|+|++|......+..+..++
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~----------- 81 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS----------- 81 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-----------
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-----------
Confidence 355555532 3444442 2345566666666665532 255566666666655543333333344444
Q ss_pred ccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECC
Q 039311 535 KELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLE 613 (909)
Q Consensus 535 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~ 613 (909)
+|+.|++++|. +.......+.++++|+.|+|++|.+..+ |..+..+++|+.|+|+
T Consensus 82 ---------------------~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 82 ---------------------GVNEILLTSNR---LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp ---------------------TCCEEECCSSC---CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred ---------------------CCCEEECCCCc---cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 44444444421 1111122244566667777777766654 4566667777777777
Q ss_pred CCCCeec-chhhccCCCCCEEeecCCC
Q 039311 614 KNNFERI-PESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 614 ~n~l~~l-p~~i~~l~~L~~L~L~~c~ 639 (909)
+|+++.+ |..+..+++|+.|+|++|+
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7777755 5566667777777777653
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.5e-12 Score=137.75 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=20.7
Q ss_pred eeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 480 ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 480 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
.|++++|.++.+| .++.+++|+.|++++|..... ..+..+++|+.|++
T Consensus 132 ~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp EEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred EEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 3333334444443 344555555555555433222 23444444444444
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=3.4e-12 Score=154.50 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=89.8
Q ss_pred EEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccc
Q 039311 345 LQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL 422 (909)
Q Consensus 345 L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 422 (909)
+++..+.+...|..+ .+.+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|. ++.+++|++|+|++|...
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 334444444444444 667777777777777777777777777777777777655 5554 777777777777777644
Q ss_pred eecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCc----ceeeccccCcc-ccCcccc
Q 039311 423 ETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNI----EELSLDGTAIQ-EFPSSIE 496 (909)
Q Consensus 423 ~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L----~~L~L~~~~i~-~lp~~i~ 496 (909)
.+|..++.|++|++|+|++| .++.+|..+ ++++|+.|+|++|...+.+|..+..+ ..|++++|.+. .+|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--- 359 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--- 359 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred ccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---
Confidence 67777777777777777775 456777666 47777777777777666666544321 13456666655 3333
Q ss_pred cCCCCCEEeccCC
Q 039311 497 RLSSLILLNLGNC 509 (909)
Q Consensus 497 ~l~~L~~L~L~~c 509 (909)
.|..|+++.|
T Consensus 360 ---~l~~l~l~~n 369 (727)
T 4b8c_D 360 ---ERRFIEINTD 369 (727)
T ss_dssp ---C---------
T ss_pred ---ccceeEeecc
Confidence 3444555554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=8e-11 Score=118.02 Aligned_cols=125 Identities=20% Similarity=0.229 Sum_probs=101.7
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc--cccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG--VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
++++++++.++.+|..+.. +|++|++++|.+..++.. +..+++|++|+|++|.+....|. +..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6788899999999987754 899999999999988864 88999999999999988777675 8899999999999987
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNL 468 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l 468 (909)
.....+..++.+++|++|++++|......|..+ .+++|+.|++++|...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 766666678899999999999975444445555 4888888888886544
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=2.8e-11 Score=118.45 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCeeEEEcCCCCcc--ccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEecc
Q 039311 362 ENLVSLEMPHSSIK--QLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439 (909)
Q Consensus 362 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L 439 (909)
.+|++|++++|.+. .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.....+|..++.+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45666666666665 5665566666666666666654333 45666666666666666544445555555666666666
Q ss_pred ccc
Q 039311 440 KHC 442 (909)
Q Consensus 440 ~~c 442 (909)
++|
T Consensus 103 s~N 105 (168)
T 2ell_A 103 SGN 105 (168)
T ss_dssp BSS
T ss_pred cCC
Confidence 654
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=4.5e-11 Score=116.97 Aligned_cols=130 Identities=23% Similarity=0.216 Sum_probs=78.0
Q ss_pred CcceeeccccCcc--ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee-cCccccc
Q 039311 477 NIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE-VPSSIAC 553 (909)
Q Consensus 477 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i~~ 553 (909)
+++.|++++|.+. .+|..+..+++|+.|++++|... .+ ..++.+++|+.|++. +|.+.. +|..
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls---------~N~l~~~~~~~--- 90 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS---------ENRIFGGLDML--- 90 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEE---------SCCCCSCCCHH---
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECc---------CCcCchHHHHH---
Confidence 4555555555555 66666666777777777776532 22 344555555555442 222222 2222
Q ss_pred cCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc--cccCCCCCCcEEECCCCCCeecch----hhccC
Q 039311 554 LKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP--ECLGQLSSRSILLLEKNNFERIPE----SIIQL 627 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l 627 (909)
+..+++|+.|++++|.+..+| ..+..+++|+.|++++|.++.+|. .+..+
T Consensus 91 ------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 91 ------------------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp ------------------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred ------------------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 223566777777777777655 567777777777777777776665 66777
Q ss_pred CCCCEEeecCCCCCcccC
Q 039311 628 SHLFSLGISHCERLHSLP 645 (909)
Q Consensus 628 ~~L~~L~L~~c~~L~~lp 645 (909)
++|+.|++++|. +..+|
T Consensus 147 ~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 147 PQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp SSCCEETTEETT-SCBCC
T ss_pred ccCcEecCCCCC-hhhcc
Confidence 788888877764 34444
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.3e-10 Score=116.60 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=103.8
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCL 421 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 421 (909)
++++++++.++.+|..+. .+|++|++++|.+..+|..+..+++|++|+|++|.+....+. |..+++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 578889999999998764 689999999999999999999999999999999987766665 899999999999998876
Q ss_pred ceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSN 467 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~ 467 (909)
...+..++.+++|++|+|++|. ++.+|.. + .+++|+.|++++|..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 6666689999999999999964 6677664 3 588888888887643
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=2.5e-11 Score=146.93 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=82.8
Q ss_pred eeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEecccccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~ 443 (909)
+..+++..+.+...+..+..+.+|+.|+|++|.+....+.+..+++|++|+|++|... .+|..++.|++|++|+|++|.
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3344555566666677788899999999999986643335778999999999998655 888889999999999999865
Q ss_pred CccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccc
Q 039311 444 SLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 444 ~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
++.+|..+ ++++|++|+|++| .+..+|..|+.+++|+.|+|++|...+.+|..+
T Consensus 282 -l~~lp~~~~~l~~L~~L~L~~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 282 -LTSLPAELGSCFQLKYFYFFDN---------------------MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp -CSSCCSSGGGGTTCSEEECCSS---------------------CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred -CCccChhhcCCCCCCEEECCCC---------------------CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66777766 4777777777764 344455555566666666666665554444433
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=6.1e-11 Score=113.48 Aligned_cols=124 Identities=22% Similarity=0.217 Sum_probs=72.9
Q ss_pred cCcceeeccccCcc--ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccc
Q 039311 476 CNIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIAC 553 (909)
Q Consensus 476 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~ 553 (909)
.+++.|++++|.+. .+|..++.+++|+.|++++|.... + ..++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l------------------------------- 63 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKL------------------------------- 63 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCC-------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcC-------------------------------
Confidence 45666666666665 566655666666666666653222 2 233333
Q ss_pred cCCCCeeecCccccccccccccCc-cCCCCCCCEEecCCCCCCCcc--cccCCCCCCcEEECCCCCCeecch----hhcc
Q 039311 554 LKNLGRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCGIIELP--ECLGQLSSRSILLLEKNNFERIPE----SIIQ 626 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~ 626 (909)
++|+.|++++|. +.+. ++. +..+++|+.|++++|.+.+++ ..++.+++|+.|++++|.++.+|. .+..
T Consensus 64 -~~L~~L~Ls~n~---i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 64 -NKLKKLELSDNR---VSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp -TTCCEEECCSSC---CCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred -CCCCEEECCCCc---ccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 444444444311 1111 122 223667777777777777654 677777888888888887776665 5677
Q ss_pred CCCCCEEeecC
Q 039311 627 LSHLFSLGISH 637 (909)
Q Consensus 627 l~~L~~L~L~~ 637 (909)
+++|+.|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 78888877653
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=7e-11 Score=113.06 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=36.2
Q ss_pred CeeEEEcCCCCcc--ccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIK--QLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
+|+.|++++|.+. .+|..+..+++|++|++++|.+... +.++.+++|++|++++|.....+|..++.+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 4444444444444 4444444555555555555543322 334444455555554444333344444444444444444
Q ss_pred c
Q 039311 441 H 441 (909)
Q Consensus 441 ~ 441 (909)
+
T Consensus 97 ~ 97 (149)
T 2je0_A 97 G 97 (149)
T ss_dssp T
T ss_pred C
Confidence 4
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=1.3e-10 Score=114.61 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=69.0
Q ss_pred CCCccEEEeeCCCCCccCCCCCCC-CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPE-NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQ 416 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 416 (909)
+.+|+.|++++|.++.+|...... +|++|++++|.+..+ ..+..+++|++|++++|.+....+. +..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 345555555556555555433333 666666666666655 4556666666666666654433333 3566666666666
Q ss_pred cccccceecc--cccCCCcccEeccccccCccccCcc----c-cCCcCcEEEccCC
Q 039311 417 GCTCLLETHS--SIQYLNKLVVLNLKHCRSLTSLSTS----I-HLGSLKKLILSGC 465 (909)
Q Consensus 417 ~c~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~Ls~c 465 (909)
+|.. ..+|. .++.+++|++|++++|. +..+|.. + .+++|+.|++++|
T Consensus 97 ~N~i-~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 97 NNSL-VELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SCCC-CCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCcC-CcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6543 34444 55666666666666643 3444442 2 3566666665554
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=7.2e-10 Score=111.03 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=93.7
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
++++++++.++.+|..+.. +|++|++++|.+....+. ++.+++|++|++++|......|..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999987654 899999999987666654 788999999999998877666788888888999988886
Q ss_pred cCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCc
Q 039311 443 RSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEG 514 (909)
Q Consensus 443 ~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~ 514 (909)
. ++.++.. + ++++|++|++++ |.+..+ |..+..+++|++|++++|.....
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYD---------------------NQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCS---------------------SCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred c-CCccCHHHhcCCCCCCEEECCC---------------------CcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 4 4444432 3 466666666555 444433 55677778888888888765443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.7e-09 Score=108.28 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=43.7
Q ss_pred cCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 578 SFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+.++++|+.|+|++|.+..++. .+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 4556777777777777776543 567777777777777777777653 5667777777777764
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=5.7e-10 Score=110.03 Aligned_cols=60 Identities=25% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCCCCCCEEecCCCCCCCccc--ccCCCCCCcEEECCCCCCeecchh----hccCCCCCEEeecCC
Q 039311 579 FGLTSLTYLRLTDCGIIELPE--CLGQLSSRSILLLEKNNFERIPES----IIQLSHLFSLGISHC 638 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~----i~~l~~L~~L~L~~c 638 (909)
..+++|+.|++++|.+.++|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 345566666666666666555 566666666666666666666653 566666666666655
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.01 E-value=1.4e-09 Score=107.25 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=95.2
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
.+.++++++.+..+|..+. .+|++|++++|.+..++.. +..+++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4567788888888886554 6889999999988888754 57888999999998876654444 6888899999998876
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLM 469 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~ 469 (909)
.....+..++.+++|++|++++| .++.+|... .+++|+.|++++|....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 65444445788888999999886 466666643 47888888888865443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=2.8e-09 Score=116.53 Aligned_cols=252 Identities=12% Similarity=0.044 Sum_probs=123.2
Q ss_pred CCCccEEEeeCCCCC--ccCCCCCCCCeeEEEcCCCCccccc-ccccc--------CCCCCEEecCCCcCCCcCCC--CC
Q 039311 339 STELRYLQWHGCPLK--SLSSKIPPENLVSLEMPHSSIKQLW-KGVQR--------LVNLKHINLSHSEHLTKIPD--LS 405 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~--------L~~L~~L~Ls~~~~l~~~p~--l~ 405 (909)
+.+|+.|++++|.+. ..+... ...+..+.+..+ .+| ..+.. +++|+.|+|.+ . ++.+++ |.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccc-cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhh
Confidence 467888888887776 222211 111344444444 233 23445 78888888877 3 444553 77
Q ss_pred ccccccccccccccccceecccccCCCcccEecccccc---CccccCcc--ccCCcCc-EEEccCCCCCcccC----ccc
Q 039311 406 LATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR---SLTSLSTS--IHLGSLK-KLILSGCSNLMSFP----ELS 475 (909)
Q Consensus 406 ~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~---~l~~lp~~--~~l~~L~-~L~Ls~c~~l~~lp----~~~ 475 (909)
+|++|+.|++.++....-.+..+..+.++..+.+.... ....+... .++.+|+ .+.+.....+.... -..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 88888888888765544444556666666665554311 11111111 1233444 33333221111100 011
Q ss_pred cCcceeeccccCccccCccc-ccCCCCCEEeccCCCCCCcCcc-cccCCCCCCeeecccccccccccCcceeecCccccc
Q 039311 476 CNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPS-KICKLKSLERLNLAEALKELKAEGIAIREVPSSIAC 553 (909)
Q Consensus 476 ~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~ 553 (909)
.++..+.+.++-...-...+ ..+++|+.|+|.+|. +..+|. .+.++++|+.|
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l------------------------- 255 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKI------------------------- 255 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEE-------------------------
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEE-------------------------
Confidence 22333333332111000011 124555555555543 222222 24444444444
Q ss_pred cCCCCeeecCccccccccccccCccCCCCCCC-EEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCC
Q 039311 554 LKNLGRLSFESFMCHEQMGLLLPISFGLTSLT-YLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHL 630 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L 630 (909)
.+.++ +.......+.++++|+ .|.+.+ ++..++ ..|.++++|+.|++.+|+++.++. .+.++++|
T Consensus 256 -------~l~~n----i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 256 -------KLPHN----LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp -------ECCTT----CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred -------ECCcc----cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 44331 2211222355566676 777766 555543 567778888888888888877765 56677777
Q ss_pred CEEe
Q 039311 631 FSLG 634 (909)
Q Consensus 631 ~~L~ 634 (909)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7765
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.8e-09 Score=118.05 Aligned_cols=255 Identities=13% Similarity=0.153 Sum_probs=158.4
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC--C--------CCCeeEEEcCCCCcccccc-
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI--P--------PENLVSLEMPHSSIKQLWK- 379 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~--~--------~~~L~~L~L~~~~i~~lp~- 379 (909)
+++|+.|++++|.+... ....+ ....++++.+..+ .+|... . +.+|+.|++++ .++.++.
T Consensus 48 l~~L~~LdLs~n~i~~~----~~~~~-~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY----SGKAG-TYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCE----EESSS-SSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred hccCeEEecCcceeEEe----cCccc-ccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 78999999998865411 11111 1222455555555 566544 6 79999999999 9999985
Q ss_pred ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc---ccee-cccccCCCccc-EeccccccCccccC--cc
Q 039311 380 GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC---LLET-HSSIQYLNKLV-VLNLKHCRSLTSLS--TS 451 (909)
Q Consensus 380 ~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~---l~~~-p~~i~~L~~L~-~L~L~~c~~l~~lp--~~ 451 (909)
.+..+++|+.|+++++......+. |..+.++..+.+..... ...+ ...+..+..|+ .+.+.....+...- ..
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 478899999999999876654444 77777777776654211 0111 12233444555 44443322222111 11
Q ss_pred ccCCcCcEEEccCCCCCcc---cCccccCcceeeccccCccccCcc-cccCCCCCEEeccCCCCCCcCcc-cccCCCCCC
Q 039311 452 IHLGSLKKLILSGCSNLMS---FPELSCNIEELSLDGTAIQEFPSS-IERLSSLILLNLGNCLRLEGLPS-KICKLKSLE 526 (909)
Q Consensus 452 ~~l~~L~~L~Ls~c~~l~~---lp~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~ 526 (909)
....+++.+.+.+.-.... +.....+|+.|+|.+|.++.+|.. |.++++|+.|++.++ +..++. .+.++++|+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhcc
Confidence 2467777787776422211 112356899999999999999876 889999999999986 555554 467777777
Q ss_pred -eeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccc-ccCCC
Q 039311 527 -RLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQL 604 (909)
Q Consensus 527 -~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l 604 (909)
.+.+..+ +..++ ...+.++++|+.|+++++++..++. .|.++
T Consensus 277 ~~l~l~~~----------l~~I~--------------------------~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 277 GTLELPAS----------VTAIE--------------------------FGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp EEEEECTT----------CCEEC--------------------------TTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred EEEEEccc----------ceEEc--------------------------hhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 7776332 12221 1234456677777777777766543 66777
Q ss_pred CCCcEEEC
Q 039311 605 SSRSILLL 612 (909)
Q Consensus 605 ~~L~~L~L 612 (909)
++|+.+..
T Consensus 321 ~~L~~ly~ 328 (329)
T 3sb4_A 321 VPSKLIYK 328 (329)
T ss_dssp CCCCEEEC
T ss_pred cchhhhcc
Confidence 77777653
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=6.4e-09 Score=102.50 Aligned_cols=124 Identities=24% Similarity=0.312 Sum_probs=70.6
Q ss_pred ceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCC
Q 039311 479 EELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG 558 (909)
Q Consensus 479 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~ 558 (909)
+.++++++.++.+|..+. ++|+.|++++|......+..++.+++|+.|++. ++.+..+|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---------~n~l~~~~~--------- 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLS---------QNQIQSLPD--------- 69 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC---------SSCCCCCCT---------
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECC---------CCcceEeCh---------
Confidence 456666666666665443 567777777765433222334555555555442 222222222
Q ss_pred eeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCCCeecchhh-ccCCCCCEEeec
Q 039311 559 RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESI-IQLSHLFSLGIS 636 (909)
Q Consensus 559 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~ 636 (909)
..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|+++.+|..+ ..+++|+.|+++
T Consensus 70 -----------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 70 -----------------GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -----------------hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 1134456666666666666665443 466677777777777777666543 567777777777
Q ss_pred CCC
Q 039311 637 HCE 639 (909)
Q Consensus 637 ~c~ 639 (909)
+|+
T Consensus 133 ~N~ 135 (177)
T 2o6r_A 133 TNP 135 (177)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=3.4e-11 Score=121.44 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=67.6
Q ss_pred CccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc
Q 039311 373 SIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 373 ~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
.++.+|..+..+++|++|++++|.+.. +|.+..+++|++|++++|.. ..+|..++.+++|++|++++| .++.+|...
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~ 112 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYN-QIASLSGIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEE-ECCCHHHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCC-cCCcCCccc
Confidence 455566666677777777777665433 55666666677777766543 355655566666666666665 344444322
Q ss_pred cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc--ccccCCCCCEEeccCCCCCC
Q 039311 453 HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS--SIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~ 513 (909)
.+++|+.|++++ |.+..+|. .+..+++|++|++++|....
T Consensus 113 ~l~~L~~L~l~~---------------------N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 113 KLVNLRVLYMSN---------------------NKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHSSEEEESE---------------------EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCCCCEEECCC---------------------CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 355555555544 44444332 45566666666666664433
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=5.3e-11 Score=119.96 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=78.2
Q ss_pred CccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccc
Q 039311 487 AIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFM 566 (909)
Q Consensus 487 ~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 566 (909)
.++.+|..+..+++|+.|++++|... .+| .+..+++|+.|++ ++|.+..+|..+..+++|+.|++++|.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l---------~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSL---------GRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEE---------EEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEEC---------CCCCcccccchhhcCCcCCEEECcCCc
Confidence 34455667777777777777777433 355 5666666666666 334555666666666666666666532
Q ss_pred cccccccccCccCCCCCCCEEecCCCCCCCccc--ccCCCCCCcEEECCCCCCeec-ch----------hhccCCCCCEE
Q 039311 567 CHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE--CLGQLSSRSILLLEKNNFERI-PE----------SIIQLSHLFSL 633 (909)
Q Consensus 567 ~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~l-p~----------~i~~l~~L~~L 633 (909)
... ++.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+... |. .+..+++|+.|
T Consensus 105 l~~-----l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 105 IAS-----LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp CCC-----HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCc-----CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 221 2234455666666666666665543 566666666666666666533 21 14556666655
Q ss_pred e
Q 039311 634 G 634 (909)
Q Consensus 634 ~ 634 (909)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=7.2e-09 Score=101.44 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=69.2
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
.+.++++++.++.+|..+. .+|++|+|++|.|+.++ ..+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4577778888888887664 67888888888888774 5577788888888888776554444 5677777777777765
Q ss_pred ccceecccccCCCcccEecccccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~ 443 (909)
.....+..++.+++|++|+|++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 443333346666666666666643
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=9.8e-09 Score=100.85 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=69.1
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++++++.+..+|..+. .+|++|+|++|.|..++ ..+..+++|++|+|++|.+....+. +..+++|++|+|++|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 567778888888887664 77888888888888774 5577788888888888765554444 56777777777777654
Q ss_pred cceecc-cccCCCcccEecccccc
Q 039311 421 LLETHS-SIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 421 l~~~p~-~i~~L~~L~~L~L~~c~ 443 (909)
. .+|. .++.+++|++|+|++|.
T Consensus 94 ~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 K-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp C-CCCTTTTTTCTTCSEEECCSSC
T ss_pred c-eeCHHHhccccCCCEEEeCCCC
Confidence 4 3443 36667777777776653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.71 E-value=4.1e-08 Score=96.37 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=67.8
Q ss_pred cccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCC
Q 039311 538 KAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNN 616 (909)
Q Consensus 538 ~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~ 616 (909)
+++++.++.+|..+. ++|+.|++++|. +.......+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 18 ~~~~n~l~~iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 18 NCQNIRLASVPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555566666543 667777777632 2222233466778888888888888887765 4778888888888888
Q ss_pred Ceecchh-hccCCCCCEEeecCCC
Q 039311 617 FERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 617 l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
++.+|.. +..+++|+.|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 8877765 7778888888888864
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=5.6e-07 Score=100.65 Aligned_cols=231 Identities=9% Similarity=0.086 Sum_probs=106.6
Q ss_pred CeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEecc
Q 039311 363 NLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L 439 (909)
+|+.+.++.+ ++.++.. +.+ .+|+.+.+..+ ++.++. |.+|++|+.+++..+. +..++...-...+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 5566665544 5555432 223 35666666542 333332 5666666666665532 3344443333456666666
Q ss_pred ccccCccccCccc--cCCcCcEEEccCCCCCcccCcc---ccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCC
Q 039311 440 KHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPEL---SCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 440 ~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~ 513 (909)
.. .++.++... ++++|+.+.+..+ +..++.. ..+|+.+.+ .+.++.++ ..|.++++|+.+.+.++...
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~- 284 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN- 284 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC-
T ss_pred CC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc-
Confidence 53 245554433 4566666666542 2222211 123444444 23344443 23455566666655554221
Q ss_pred cCcccccCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCC
Q 039311 514 GLPSKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDC 592 (909)
Q Consensus 514 ~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~ 592 (909)
......++ ..+..+++|+.+.+.. ++.......+.++++|+.+.|..+
T Consensus 285 ---------------------------~~~~~~I~~~aF~~c~~L~~l~l~~----~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 285 ---------------------------DDPEAMIHPYCLEGCPKLARFEIPE----SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ---------------------------CCTTCEECTTTTTTCTTCCEECCCT----TCCEECTTTTTTCCSCCEEEECTT
T ss_pred ---------------------------CCcccEECHHHhhCCccCCeEEeCC----ceEEEhhhhhcCCCCccEEEECcc
Confidence 00011111 1234444444444432 111111223444566666666433
Q ss_pred CCCCc-ccccCCCCCCcEEECCCCCCeecch-hhccCC-CCCEEeecC
Q 039311 593 GIIEL-PECLGQLSSRSILLLEKNNFERIPE-SIIQLS-HLFSLGISH 637 (909)
Q Consensus 593 ~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~-~L~~L~L~~ 637 (909)
+..+ ..+|.++ +|+.+.+.+|....++. .+..++ .++.|++..
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 3333 2345556 67777777766655443 233442 456666554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=6e-08 Score=94.78 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=66.9
Q ss_pred ccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCC
Q 039311 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKN 615 (909)
Q Consensus 537 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n 615 (909)
++++++.+..+|..+. ++|+.|++++| .+.......+.++++|+.|+|++|.+..+|.. +..+++|+.|+|++|
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCC---cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3345555566665442 66777777663 23322333466778888888888888876654 477888888888888
Q ss_pred CCeecchh-hccCCCCCEEeecCCC
Q 039311 616 NFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 616 ~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+++.+|.. +..+++|+.|+|++|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88877764 6778888888888864
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=1.6e-06 Score=97.01 Aligned_cols=195 Identities=10% Similarity=0.129 Sum_probs=97.5
Q ss_pred CcccccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCC-C-CCCCeeEEEcCCCCcccccccc
Q 039311 304 NAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSK-I-PPENLVSLEMPHSSIKQLWKGV 381 (909)
Q Consensus 304 ~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~lp~~~ 381 (909)
...+|.+. +|+.+.+.++ +. .+. ...+.-..|+.+.+.. .++.++.. | .+.+|+.+++++++++.++...
T Consensus 128 ~~~aF~~~-~L~~i~l~~~-i~----~I~-~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLNEG-LK----SIG-DMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CTTTTTTC-CCSEEECCTT-CC----EEC-TTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred hHhhcccC-CccEEEeCCC-cc----EEC-HHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 34566664 5666666533 11 110 1111223466666654 45555533 2 5566666666666666666554
Q ss_pred ccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccccccCccccCccc--cCCcC
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSL 457 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L 457 (909)
....+|+.+.+..+ ++.++. |.++++|+.+++..+ +..++...-.-.+|+.+.+.+ .++.++... ++++|
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTC
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCC
Confidence 44566666666543 344443 666666666666542 333333222225566666632 344443332 35555
Q ss_pred cEEEccCCCCCcccCccccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcc-cccCCCCCCeeec
Q 039311 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPS-KICKLKSLERLNL 530 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l 530 (909)
+.+.+.++... .+.+..++ ..|.++++|+.+.|.++ +..++. .+.++++|+.+.+
T Consensus 274 ~~l~l~~~~~~----------------~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 274 AEVTTYGSTFN----------------DDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CEEEEESSCCC----------------CCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEE
T ss_pred CEEEeCCcccc----------------CCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEE
Confidence 55555442211 01111333 33667777777777642 333332 3555566666655
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=3.6e-06 Score=94.19 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=54.2
Q ss_pred cCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcCcee
Q 039311 578 SFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLSDIE 655 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~ 655 (909)
+.++.+|+.+.+.++ +..+ ..++.++.+|+.++|.. .++.++. .+.++.+|+.+.+... ++.|+.- -
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------a 361 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------A 361 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT-------T
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH-------H
Confidence 445667777777543 3333 34566777788777754 3666653 4566777777766542 4444431 1
Q ss_pred cccCcccccccCcchhccccCCCcceeEecccCCCC
Q 039311 656 AHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLD 691 (909)
Q Consensus 656 i~~C~~L~~l~~~~~l~~~~~~~~~~l~~~~C~~L~ 691 (909)
..+|++|+++..+..+... ...|.+|.+|+
T Consensus 362 F~~C~~L~~i~lp~~~~~~------~~~F~~c~~L~ 391 (394)
T 4fs7_A 362 FQGCINLKKVELPKRLEQY------RYDFEDTTKFK 391 (394)
T ss_dssp BTTCTTCCEEEEEGGGGGG------GGGBCTTCEEE
T ss_pred hhCCCCCCEEEECCCCEEh------hheecCCCCCc
Confidence 3466666666543322111 12477787775
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=7.2e-07 Score=97.99 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=36.9
Q ss_pred EEeeCC-CCCccCCCC-CCCCeeEEEcCC-CCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 345 LQWHGC-PLKSLSSKI-PPENLVSLEMPH-SSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 345 L~l~~~-~l~~lp~~~-~~~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
++.+++ .+..+|. + .+.+|++|+|++ |.+..++ ..+..|++|++|+|++|.+....|. |.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344454 5555555 4 344555555553 5555555 2355555555555555554443333 444444444444444
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=8.1e-07 Score=97.58 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=30.8
Q ss_pred cCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCC
Q 039311 578 SFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 638 (909)
+.++++|+.|+|++|.+..++ ..|.++++|+.|+|++|+++.+|..+.....|+.|+|.+|
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 444555555555555555433 2445555555555555555555543332223555555554
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=3.3e-05 Score=86.27 Aligned_cols=321 Identities=13% Similarity=0.095 Sum_probs=168.6
Q ss_pred EEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCccc
Q 039311 300 EIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQ 376 (909)
Q Consensus 300 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~ 376 (909)
...+...||.++.+|+.+.+..+ +. .+. ...+. +.+|+.+.+..+ ++.++... ....|+.+.++.+ +..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~----~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~ 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR----EIG-EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKS 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC----EEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc----Ccc-hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eee
Confidence 34567788888888888887632 11 111 12233 567777777543 55665433 4556666655533 333
Q ss_pred cc-cccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceec-ccccCCCcccEeccccccCccccCccc
Q 039311 377 LW-KGVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 377 lp-~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
+. ..+..+..+........ ..+. .|.++.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+ ++.++...
T Consensus 131 i~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~ 203 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYC 203 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTT
T ss_pred ecceeeecccccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchh
Confidence 32 12233322222222111 1112 2556666666666432 12222 23445566666655432 34433322
Q ss_pred --cCCcCcEEEccCCCC-CcccCccccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcccccCCCCCCee
Q 039311 453 --HLGSLKKLILSGCSN-LMSFPELSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERL 528 (909)
Q Consensus 453 --~l~~L~~L~Ls~c~~-l~~lp~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L 528 (909)
++..|+.+.+..... ++.......+|+.+.+..+ +..+. ..+..+..|+.+.+..+. ...-...+..+..|+.+
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKV 281 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEE
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeecccccccccccee
Confidence 345555544433211 1111112234555544322 22232 235567777777776542 22222345666666666
Q ss_pred ecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCC
Q 039311 529 NLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSS 606 (909)
Q Consensus 529 ~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~ 606 (909)
.... . .++ ..+..+.+|+.+.+.. ++....-..+.++.+|+.++|.++ +..+ ..++.++.+
T Consensus 282 ~~~~---------~---~i~~~~F~~~~~L~~i~l~~----~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 282 IYGS---------V---IVPEKTFYGCSSLTEVKLLD----SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp EECS---------S---EECTTTTTTCTTCCEEEECT----TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccCc---------e---eecccccccccccccccccc----ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 5421 1 122 2356677788877754 222222334667888999988643 5554 357788999
Q ss_pred CcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcCceecccCcccccc
Q 039311 607 RSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 607 L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l 665 (909)
|+.+.+..+ ++.++. .+.++++|+.+.+... ++.+. -...+|++|+.+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~--------~~F~~c~~L~~I 393 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYR--------YDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGG--------GGBCTTCEEEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhh--------heecCCCCCcEE
Confidence 999999766 777764 6678889999888642 32221 135688888765
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=4e-08 Score=108.93 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=33.0
Q ss_pred CccccccCCCCeeecCcccccccccccc-CccCCCCCCCEEecCCCCCCCc-cc---ccCCCCC--CcEEE--CCCCCCe
Q 039311 548 PSSIACLKNLGRLSFESFMCHEQMGLLL-PISFGLTSLTYLRLTDCGIIEL-PE---CLGQLSS--RSILL--LEKNNFE 618 (909)
Q Consensus 548 p~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~l-p~---~l~~l~~--L~~L~--L~~n~l~ 618 (909)
+..+...++|+.|++++|.........+ ..+...++|+.|+|++|.+.+. .. .+..... |+.+. +..+.+.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445555667777776632211110011 1123457889999999988731 11 1222222 77776 6666554
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=9.6e-08 Score=105.85 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.++|++|+|++|.+.+ ++..+...++|+.|+|++|.++ .++..+...++|++|+|++|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3445555555555442 2344444555566666655554 223334445556666666553
No 153
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.12 E-value=7.1e-06 Score=92.21 Aligned_cols=217 Identities=11% Similarity=0.027 Sum_probs=127.9
Q ss_pred CChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhC--CCeEEEEEeCCCCH--------HHHHHHhhccCCC---C--
Q 039311 12 GGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTS--------EQMEFLIGNQGWL---M-- 76 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~--------~~~~~l~~~~~~~---~-- 76 (909)
.+...+.++++.++.........+..+....+.+.|. +++++|||||++.. +.+..+...+... +
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 4667888888888852111111222344556666665 68999999999764 3344443322211 2
Q ss_pred CCCEEEEEeCCchhhhhcC---------CCcEEECCCCCHHHHHHHHHHh---hcCCCCCCchhHHHHHHHHHHhC----
Q 039311 77 QGSRLIITARDKQVLKNCG---------VDTIYEVKELFDDDARMLFSRY---AFGKNYPNVGYMELSNKIIKYAK---- 140 (909)
Q Consensus 77 ~gSrIivTTR~~~v~~~~~---------~~~~y~l~~L~~~es~~LF~~~---af~~~~~~~~~~~l~~~iv~~c~---- 140 (909)
..-.||+|||+.++...+. ....+++++++.++++++|... +|.....+ .+....|+++++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKG 254 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGT
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhcc
Confidence 2334888998765432211 1233999999999999999754 44432222 356788889999
Q ss_pred --CCchHHHHHhHhh------cCC---CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccC-C---C
Q 039311 141 --GVPLAIKVLGRFL------CGR---RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFK-G---E 205 (909)
Q Consensus 141 --GlPLal~~lg~~L------~~~---~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~-~---~ 205 (909)
|.|..+..+.... .+. +.+.+..++..... ...+.-+++.||...+.++..+|.++. + .
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997655554321 122 34555555443210 344566788999999999988887642 1 2
Q ss_pred CHHHHHHHH-----HhcCCC------cccchhHhhhccccEEe
Q 039311 206 DKDCVIKFL-----DGCGFS------AEIGISVLVDKCLMVIL 237 (909)
Q Consensus 206 ~~~~li~~w-----~~~g~~------~~~~i~~L~~~~li~~~ 237 (909)
....+...+ ...|.. ...+++.|++.++|...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 344333322 223432 13468899999999875
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=9.6e-07 Score=97.03 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=40.8
Q ss_pred CCCCCCEEecCCCCCCC-ccccc---CCCCCCcEEECCCCCCee-----cchhhccCCCCCEEeecCCC
Q 039311 580 GLTSLTYLRLTDCGIIE-LPECL---GQLSSRSILLLEKNNFER-----IPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~-lp~~l---~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 639 (909)
.+|+|+.|+|++|.+.+ .+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 36778888887777662 11111 357788888888887763 45555677888888888774
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2.4e-06 Score=93.84 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=70.3
Q ss_pred cccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceeccccc--CCCcccEecccccc-------CccccC
Q 039311 379 KGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQ--YLNKLVVLNLKHCR-------SLTSLS 449 (909)
Q Consensus 379 ~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~--~L~~L~~L~L~~c~-------~l~~lp 449 (909)
.-+..+++|+.|+|+++.... ++.+ .+++|++|++..|.........+. .+++|++|+|+.+. .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 334566778888887764332 3334 367788888877664433333343 67788888775321 121221
Q ss_pred ccc---cCCcCcEEEccCCCCCcccC------ccccCcceeeccccCccc-----cCcccccCCCCCEEeccCCC
Q 039311 450 TSI---HLGSLKKLILSGCSNLMSFP------ELSCNIEELSLDGTAIQE-----FPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 450 ~~~---~l~~L~~L~Ls~c~~l~~lp------~~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~ 510 (909)
..+ .+++|+.|++++|......+ ...++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111 36677777777665432111 123455666666555542 34444555666666666553
No 156
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.03 E-value=2.4e-05 Score=85.54 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=119.3
Q ss_pred chHHHHHhhCC-CeEEEEEeCCCCHH---------HHHHHhhccCCCCCCCEEEEEeCCchhhhhc-----------CC-
Q 039311 39 GLNFRSKRLSR-KKVLIVFDDVSTSE---------QMEFLIGNQGWLMQGSRLIITARDKQVLKNC-----------GV- 96 (909)
Q Consensus 39 ~~~~i~~~L~~-kr~LlVLDDv~~~~---------~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~-----------~~- 96 (909)
....+.+..+. ++++|||||++... .+..+...... .++.++|+|++...+.... +.
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 33444444432 49999999997643 23444332221 2578999999886542211 11
Q ss_pred CcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC-CCHHHHH-HHHHHHhcCCCc
Q 039311 97 DTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG-RRIKDWE-STIKKIKRIPHV 174 (909)
Q Consensus 97 ~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~-~~~~~W~-~~l~~L~~~~~~ 174 (909)
...+++.+|+.+|+.+++....-....... .+.+..++..++|.|+++..++..+.. .+..++- ...+........
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMG 272 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHH
Confidence 248999999999999999764321111111 356789999999999999999876532 2322221 111111110011
Q ss_pred chhhhhhhcccCCChhhhhhheeeeeccCCCCHHHHHHHHHhc--CCCc---ccchhHhhhccccEEeCCeEEe-hHHHH
Q 039311 175 DIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGC--GFSA---EIGISVLVDKCLMVILNNKIMM-HDLLQ 248 (909)
Q Consensus 175 ~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~~~~~li~~w~~~--g~~~---~~~i~~L~~~~li~~~~~~~~m-hdll~ 248 (909)
++. .+.++ ++..+.++..+|+ .......+...+... |... ..+++.|++.++|....+.+.+ |.+++
T Consensus 273 ~l~---~l~~~--~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~ 345 (350)
T 2qen_A 273 ELE---ELRRR--SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVA 345 (350)
T ss_dssp HHH---HHHHH--CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHH
T ss_pred HHH---HHHhC--ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHH
Confidence 111 11122 6778888888887 223555555554322 3322 3568999999999987777776 55665
Q ss_pred HH
Q 039311 249 EM 250 (909)
Q Consensus 249 e~ 250 (909)
+.
T Consensus 346 ~~ 347 (350)
T 2qen_A 346 TV 347 (350)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.0011 Score=73.78 Aligned_cols=129 Identities=11% Similarity=0.179 Sum_probs=71.0
Q ss_pred EeeCcccccCCC-CCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCC---CCccCCCC--CCCCeeEEEcCCCC
Q 039311 301 IHLNAGSFTNMH-KLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCP---LKSLSSKI--PPENLVSLEMPHSS 373 (909)
Q Consensus 301 ~~~~~~~f~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~---l~~lp~~~--~~~~L~~L~L~~~~ 373 (909)
..+...+|.+++ .|+.+.+-++- . .+. ...+. ..+|+.+.+..+. ++.++... ...+|+.+.+..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~sv-t----~Ig-~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDTV-T----EIG-SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTTC-C----EEC-TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred eEcCHhhccCCCCcCEEEEECCCe-e----EEh-HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 346677888774 58887776321 0 111 12233 5677777776552 55554433 4556666666543
Q ss_pred ccccc-cccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccc
Q 039311 374 IKQLW-KGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 374 i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
++.++ ..+..+.+|+.+.+..+ ...+++ +..+.+|+.+.+..+ +..+....-...+|+.+.+.
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEEC
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEEC
Confidence 44444 33566777777777643 333443 667777777776542 33343332233456666554
No 158
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.99 E-value=7.6e-06 Score=89.89 Aligned_cols=189 Identities=13% Similarity=0.123 Sum_probs=115.0
Q ss_pred CeEEEEEeCCCCHH-----H-HHHHhhccCCCCCCCEEEEEeCCchhhhh-----------cCC-CcEEECCCCCHHHHH
Q 039311 50 KKVLIVFDDVSTSE-----Q-MEFLIGNQGWLMQGSRLIITARDKQVLKN-----------CGV-DTIYEVKELFDDDAR 111 (909)
Q Consensus 50 kr~LlVLDDv~~~~-----~-~~~l~~~~~~~~~gSrIivTTR~~~v~~~-----------~~~-~~~y~l~~L~~~es~ 111 (909)
++++|||||++... + +..+..... ..++.++|+|+|....... .+. ...+++.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 49999999997632 2 233322221 1247899999998754321 111 358999999999999
Q ss_pred HHHHHhhcC-CCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC-CCHHHHHHH-HHHHhcCCCcchhhhhhhccc--C
Q 039311 112 MLFSRYAFG-KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG-RRIKDWEST-IKKIKRIPHVDIQKVLKVSFD--G 186 (909)
Q Consensus 112 ~LF~~~af~-~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~-~~~~~W~~~-l~~L~~~~~~~i~~~L~~sy~--~ 186 (909)
+++...+-. +..+.+ . ..|+..++|.|+++..++..+.. .+..+|-.. .+........++. .+.++ .
T Consensus 216 ~~l~~~~~~~~~~~~~-~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ 287 (357)
T 2fna_A 216 EFLRRGFQEADIDFKD-Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFE---NFLHGREI 287 (357)
T ss_dssp HHHHHHHHHHTCCCCC-H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---HHHTTCGG
T ss_pred HHHHHHHHHcCCCCCc-H----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHH---HHhhcccc
Confidence 999874321 112222 1 78999999999999999987642 233344221 1111110011111 12221 6
Q ss_pred CChhhhhhheeeeeccCCCCHHHHHHHHH-hcC--CC---cccchhHhhhccccEEeCCeEEe-hHHHHHH
Q 039311 187 LDDEEQNLFLDIASFFKGEDKDCVIKFLD-GCG--FS---AEIGISVLVDKCLMVILNNKIMM-HDLLQEM 250 (909)
Q Consensus 187 L~~~~k~cfl~~a~f~~~~~~~~li~~w~-~~g--~~---~~~~i~~L~~~~li~~~~~~~~m-hdll~e~ 250 (909)
|++..+..+..+|+ |.+...+..... ..| .. ...+++.|++.++|....+.+.+ |.++++.
T Consensus 288 l~~~~~~~l~~la~---g~~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 288 ARKRYLNIMRTLSK---CGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp GHHHHHHHHHHHTT---CBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 88888999998887 224455544332 234 32 24568999999999987677774 6777664
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.88 E-value=0.0016 Score=71.87 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=71.2
Q ss_pred cccCCCCCEEeccCCCCCCcCc-ccccCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLP-SKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~ 572 (909)
+....+|+.+.+... +..++ ..+..+..|+.+.+..+++ .+. ..+..+.+|+.+.+.. ++..
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~----------~I~~~aF~~~~~l~~i~l~~----~i~~ 276 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVT----------SIGSFLLQNCTALKTLNFYA----KVKT 276 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCC----------EECTTTTTTCTTCCEEEECC----CCSE
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCCcc----------EeCccccceeehhccccccc----ccee
Confidence 444556666655432 22222 2345666676666644322 222 2345566677776643 2222
Q ss_pred cccCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeec
Q 039311 573 LLLPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGIS 636 (909)
Q Consensus 573 ~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~ 636 (909)
.....+.++.+|+.+.+.++.+..++ ..+.++.+|+.+.|..+ ++.++. .+.++.+|+.+.+.
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 22234566788888888877777654 46778888888888643 666654 44556666655553
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=0.002 Score=71.56 Aligned_cols=272 Identities=11% Similarity=0.205 Sum_probs=137.9
Q ss_pred CeeEEEcCCCCccccc-cccccCCCCCEEecCCCc--CCCcCCC--CCccccccccccccccccceec-ccccCCCcccE
Q 039311 363 NLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSE--HLTKIPD--LSLATNLESLNFQGCTCLLETH-SSIQYLNKLVV 436 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~--~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~ 436 (909)
.|+.+.++.+ ++.+. ..+.++.+|+.+.+..+. .++.+.. |..+.+|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 4666666643 55554 346667777777776542 2334443 666777777666542 33333 34556677777
Q ss_pred eccccccCccccCccc--cCCcCcEEEccCCCCCcccCc---cccCcceeeccccCccccCcccccCCCCCEEeccCCCC
Q 039311 437 LNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLR 511 (909)
Q Consensus 437 L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~ 511 (909)
+.+.. .+..++... ++.+|+.+.+.+. +..+.. ...+|+.+.+..+-..--...+..+..|..........
T Consensus 142 i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccc--eeeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc
Confidence 77653 234443332 4666666666532 222211 11234444443322221122344455555554433211
Q ss_pred CCcCcccc--------------cCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccccC
Q 039311 512 LEGLPSKI--------------CKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLLLP 576 (909)
Q Consensus 512 l~~lp~~l--------------~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 576 (909)
. .+...+ .....+..+.+.. .+..+. ..+..+++|+.+.+.. ......-.
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~----------~v~~i~~~aF~~c~~L~~i~lp~----~~~~I~~~ 282 (394)
T 4gt6_A 218 P-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN----------GVARIETHAFDSCAYLASVKMPD----SVVSIGTG 282 (394)
T ss_dssp C-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT----------TEEEECTTTTTTCSSCCEEECCT----TCCEECTT
T ss_pred c-cccceeecccccccccccccccccccceEEcCC----------cceEcccceeeecccccEEeccc----ccceecCc
Confidence 1 111000 0111122222211 122222 2356677788887754 12222223
Q ss_pred ccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcCce
Q 039311 577 ISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLSDI 654 (909)
Q Consensus 577 ~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L 654 (909)
.+.++++|+.+.+. ..+..++ ..+.++.+|+.+.|..+ ++.+.. .+.++.+|+.+.|.. .++.|++ =
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~-------~ 351 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPE-------S 351 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCG-------G
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhH-------h
Confidence 35667888888885 3444443 45677888999888754 666654 567788888887753 2444443 1
Q ss_pred ecccCcccccccC
Q 039311 655 EAHCCSSLEALSG 667 (909)
Q Consensus 655 ~i~~C~~L~~l~~ 667 (909)
-..+|.+|+++..
T Consensus 352 aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 352 AFSNCTALNNIEY 364 (394)
T ss_dssp GGTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 2346777766654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=1.2e-05 Score=77.75 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=48.6
Q ss_pred ccCCCC-CCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCC--CCCc----cccccccccccccccc-ee
Q 039311 354 SLSSKI-PPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIP--DLSL----ATNLESLNFQGCTCLL-ET 424 (909)
Q Consensus 354 ~lp~~~-~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~----l~~L~~L~L~~c~~l~-~~ 424 (909)
.+|... .-.+|+.||++++.|+..- ..+..+++|+.|+|++|..++.-- .++. +++|++|+|++|..++ .-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 445443 3446777777777765321 335567777777777776443211 1222 2345566666554322 22
Q ss_pred cccccCCCcccEeccccccCccc
Q 039311 425 HSSIQYLNKLVVLNLKHCRSLTS 447 (909)
Q Consensus 425 p~~i~~L~~L~~L~L~~c~~l~~ 447 (909)
-..+..+++|++|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 23344455555555555554443
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=1.5e-05 Score=77.06 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=67.4
Q ss_pred ccccccccCCCCCEEecCCCcCCCc-CCCCCccccccccccccccccce-ecccccCC----CcccEeccccccCcccc-
Q 039311 376 QLWKGVQRLVNLKHINLSHSEHLTK-IPDLSLATNLESLNFQGCTCLLE-THSSIQYL----NKLVVLNLKHCRSLTSL- 448 (909)
Q Consensus 376 ~lp~~~~~L~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~~l~~-~p~~i~~L----~~L~~L~L~~c~~l~~l- 448 (909)
.+|.....-.+|+.||+++|.+... +..+..+++|++|+|++|..++. --..+..+ ++|++|+|++|..+++-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4555433345799999999974332 23478899999999999975433 33445554 47999999999888762
Q ss_pred -CccccCCcCcEEEccCCCCCcc
Q 039311 449 -STSIHLGSLKKLILSGCSNLMS 470 (909)
Q Consensus 449 -p~~~~l~~L~~L~Ls~c~~l~~ 470 (909)
.....+++|+.|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 2223689999999999987654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.55 E-value=0.005 Score=67.90 Aligned_cols=147 Identities=11% Similarity=0.142 Sum_probs=88.3
Q ss_pred ccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccc
Q 039311 496 ERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
.....+..+.+.... .......+....+|+.+.+..++. .+. ..+..+.+|+.+.+.. ++....
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~~----------~i~~~~f~~~~~L~~i~lp~----~v~~I~ 255 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGVT----------TLGDGAFYGMKALDEIAIPK----NVTSIG 255 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTCC----------EECTTTTTTCSSCCEEEECT----TCCEEC
T ss_pred cccccccccccccce-eEEeecccccccccceeeecccee----------EEccccccCCccceEEEcCC----CccEeC
Confidence 344455555444321 111223355667777777644322 222 2356677888888754 222222
Q ss_pred cCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLS 652 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~ 652 (909)
...+.++.+|+.+.+... +..++ ..+.++++|+.+.+.++.++.++. .+.++.+|+.+.|.. .++.|+..
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~----- 327 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVY----- 327 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT-----
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHH-----
Confidence 334566888999988654 44443 467889999999999999988875 567888999988853 24444431
Q ss_pred ceecccCcccccccC
Q 039311 653 DIEAHCCSSLEALSG 667 (909)
Q Consensus 653 ~L~i~~C~~L~~l~~ 667 (909)
-..+|.+|+++..
T Consensus 328 --aF~~C~~L~~i~i 340 (379)
T 4h09_A 328 --AFKNCKALSTISY 340 (379)
T ss_dssp --TTTTCTTCCCCCC
T ss_pred --HhhCCCCCCEEEE
Confidence 1235666665544
No 164
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.55 E-value=0.0013 Score=72.75 Aligned_cols=214 Identities=13% Similarity=0.005 Sum_probs=128.1
Q ss_pred ChHHHHHHHHHHHhcCCCC-cccCCccchHHHHHhhCCCeEEEEEeCCCCHHH---HHH-HhhccCCCCCCCEEEEEeCC
Q 039311 13 GLAHLRQILLSAILDDGNV-SIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQ---MEF-LIGNQGWLMQGSRLIITARD 87 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~-~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~---~~~-l~~~~~~~~~gSrIivTTR~ 87 (909)
....+..+++.++.+.... ...+.......+.+.++.++.+|||||++.... .+. +.....+. .+.+||+||+.
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 4556777788887522111 112234456778888888777999999986543 222 22222333 78899999997
Q ss_pred chhhhhc------CCCcEEECCCCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhC---CCch-HHHHHhHhh-
Q 039311 88 KQVLKNC------GVDTIYEVKELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAK---GVPL-AIKVLGRFL- 153 (909)
Q Consensus 88 ~~v~~~~------~~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~---GlPL-al~~lg~~L- 153 (909)
....... .....+++++++.++..++|...+ |.....++ +..+.++++++ |.|- |+..+-.+.
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 6322111 112389999999999999999874 43333333 44567777777 8876 444433332
Q ss_pred -c----CCCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccC-CCCHHHHHHHHHhcCCCc------
Q 039311 154 -C----GRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFK-GEDKDCVIKFLDGCGFSA------ 221 (909)
Q Consensus 154 -~----~~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~-~~~~~~li~~w~~~g~~~------ 221 (909)
. ..+.+.++.+++.... ..+.-++++|+..+|..+..++.... +...+....+....|..+
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 2368888888876532 34556678889888877766665111 111112223333334211
Q ss_pred ccchhHhhhccccEEe
Q 039311 222 EIGISVLVDKCLMVIL 237 (909)
Q Consensus 222 ~~~i~~L~~~~li~~~ 237 (909)
..+++.|.++++|...
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 2346778888988864
No 165
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.46 E-value=0.0025 Score=70.45 Aligned_cols=246 Identities=13% Similarity=0.004 Sum_probs=137.5
Q ss_pred ChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhh--CCCeEEEEEeCCCCHH----HHHHHhhccCCC-----CCCCEE
Q 039311 13 GLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRL--SRKKVLIVFDDVSTSE----QMEFLIGNQGWL-----MQGSRL 81 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L--~~kr~LlVLDDv~~~~----~~~~l~~~~~~~-----~~gSrI 81 (909)
+...+..+++.++.........+..+....+.+.+ .+++++|||||++... +.+.+...+.+. ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 44566777777774211111222334455666666 4568999999998754 223333222221 456688
Q ss_pred EEEeCCchh--------hhhcCCCcEEECCCCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhC---CCc-hHH
Q 039311 82 IITARDKQV--------LKNCGVDTIYEVKELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAK---GVP-LAI 146 (909)
Q Consensus 82 ivTTR~~~v--------~~~~~~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~---GlP-Lal 146 (909)
|.||+.... ...++ ...+.+++++.++..+++...+ +.....++ +..+.++++++ |.| .|+
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHH
Confidence 888887632 22221 2589999999999999998874 33333233 34567777777 999 343
Q ss_pred HHHhHhhc-----C---CCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccCCC---CHHHHH----
Q 039311 147 KVLGRFLC-----G---RRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE---DKDCVI---- 211 (909)
Q Consensus 147 ~~lg~~L~-----~---~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~---~~~~li---- 211 (909)
..+..+.. + .+.+.++.+++.... ..+.-++.+|+...+..++.++....+. ....+.
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIER-------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 43333321 2 267788888776532 2455567889998888777777554443 222222
Q ss_pred HHHHhcCCCc------ccchhHhhhccccEEeCCeEEehHHHHHHHHHHhhhcccCCCCCeeeeccchhHHHHhhcCCCC
Q 039311 212 KFLDGCGFSA------EIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGT 285 (909)
Q Consensus 212 ~~w~~~g~~~------~~~i~~L~~~~li~~~~~~~~mhdll~e~~~~i~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~ 285 (909)
.+....|..+ ...++.|...|++...... ...-......+..|.++++..++.+....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~----------------~g~~g~~~~~~l~~~~~~i~~~l~~~~~~ 383 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVS----------------RGRYGKTREVSLDADRLAVENALSEDPFV 383 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEE----------------CGGGCEEEEEEECSCHHHHHHHHHHSTTG
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeec----------------CCCCCceeEEEecCCHHHHHHHHhccHhh
Confidence 2222233211 2346777777777763100 00000011334567778888887765443
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.0015 Score=66.72 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=75.1
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCchhhh-h-cCCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQVLK-N-CGVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~-~-~~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++.+|||||++. .+.++.+...+.....+.+||+||+...... . ......+++++++.+|..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 34689999999965 5567777776655567889999997754222 1 122368999999999999999888754332
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHHhHhh
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAIKVLGRFL 153 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal~~lg~~L 153 (909)
..+ .+..+.++++|+|.|..+..+...+
T Consensus 204 ~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 3567889999999999888776543
No 167
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00013 Score=72.01 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEEC--CCCCCee-----cchhhccCCCCCEEeecCC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLL--EKNNFER-----IPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L--~~n~l~~-----lp~~i~~l~~L~~L~L~~c 638 (909)
.++|++|+|++|.+.+ +...+...++|+.|+| ++|.+.. +...+...+.|++|+|++|
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456666666666663 4455555666666666 5566651 3344455566666666655
No 168
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.97 E-value=0.00039 Score=72.35 Aligned_cols=60 Identities=30% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCCeeEEEcCCCCccccc---cccccCCCCCEEecCCCcCCCcCCCCCccc--ccccccccccccc
Q 039311 361 PENLVSLEMPHSSIKQLW---KGVQRLVNLKHINLSHSEHLTKIPDLSLAT--NLESLNFQGCTCL 421 (909)
Q Consensus 361 ~~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~--~L~~L~L~~c~~l 421 (909)
+.+|++|+|++|.|..++ ..+..+++|++|+|++|.+... .++..+. +|++|+|++|...
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 345555555555555433 3344566666666666553322 2222222 4555555554433
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.00077 Score=70.09 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCCEEecCCCCCCCc---ccccCCCCCCcEEECCCCCCeecchhhccCC--CCCEEeecCCCCCcccC
Q 039311 581 LTSLTYLRLTDCGIIEL---PECLGQLSSRSILLLEKNNFERIPESIIQLS--HLFSLGISHCERLHSLP 645 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~l---p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~--~L~~L~L~~c~~L~~lp 645 (909)
+++|+.|+|++|.+..+ |..+..+++|+.|+|++|++..+. .+..+. +|++|+|++|+--..+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 55666666666666643 344456777777777777776552 233333 67777777766433343
No 170
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.85 E-value=0.00017 Score=70.98 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=69.6
Q ss_pred cccCCCCCEEeccCC-CCCC----cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccc
Q 039311 495 IERLSSLILLNLGNC-LRLE----GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE 569 (909)
Q Consensus 495 i~~l~~L~~L~L~~c-~~l~----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 569 (909)
+...+.|+.|+|++| .... .+...+...++|+.|++..| .+.......+...+...++|+.|++++|....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n----~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT----RSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS----CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC----CCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 445566666666666 3322 13334455566666665332 01111112344445566778888888743322
Q ss_pred ccccc-cCccCCCCCCCEEec--CCCCCCC-----cccccCCCCCCcEEECCCCCCe
Q 039311 570 QMGLL-LPISFGLTSLTYLRL--TDCGIIE-----LPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 570 ~~~~~-~~~~~~l~~L~~L~L--s~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
..... ...+...++|++|+| ++|.+.+ +...+...++|+.|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 11111 122445678999999 7888883 5566677789999999999875
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.84 E-value=0.0031 Score=69.61 Aligned_cols=188 Identities=11% Similarity=0.012 Sum_probs=110.4
Q ss_pred hHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhhccCC-CCCCCEEEEEeCCchhhhhcC-------CCcEEECC
Q 039311 40 LNFRSKRLS--RKKVLIVFDDVSTSE------QMEFLIGNQGW-LMQGSRLIITARDKQVLKNCG-------VDTIYEVK 103 (909)
Q Consensus 40 ~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~~~~-~~~gSrIivTTR~~~v~~~~~-------~~~~y~l~ 103 (909)
...+.+.+. +++.+|||||++... .+..+...... ...+..||+||++......+. ....++++
T Consensus 116 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~ 195 (386)
T 2qby_A 116 YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP 195 (386)
T ss_dssp HHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC
T ss_pred HHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC
Confidence 445555554 458999999997633 34444433321 234567788998775443331 12589999
Q ss_pred CCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhC---CCchHHH-HHhHhh-----cC---CCHHHHHHHHHHH
Q 039311 104 ELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAK---GVPLAIK-VLGRFL-----CG---RRIKDWESTIKKI 168 (909)
Q Consensus 104 ~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~---GlPLal~-~lg~~L-----~~---~~~~~W~~~l~~L 168 (909)
+++.++..+++...+ +...... .+..+.++++++ |.|..+. .+.... .+ .+.+.++.+++..
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999999999998764 3222222 355667777777 9997443 333322 12 2577777777655
Q ss_pred hcCCCcchhhhhhhcccCCChhhhhhheeeeeccC-CC---CHHHH----HHHHHhcCCCc------ccchhHhhhcccc
Q 039311 169 KRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFK-GE---DKDCV----IKFLDGCGFSA------EIGISVLVDKCLM 234 (909)
Q Consensus 169 ~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~-~~---~~~~l----i~~w~~~g~~~------~~~i~~L~~~~li 234 (909)
. ...+.-++.+++..++..+..++...+ +. ....+ ..+-...|..+ ..+++.|.+.|+|
T Consensus 273 ~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli 345 (386)
T 2qby_A 273 E-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGIL 345 (386)
T ss_dssp H-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSE
T ss_pred h-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCE
Confidence 3 234556677889888888877775443 22 12222 22222334322 2457778888888
Q ss_pred EEe
Q 039311 235 VIL 237 (909)
Q Consensus 235 ~~~ 237 (909)
...
T Consensus 346 ~~~ 348 (386)
T 2qby_A 346 TAK 348 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.07 E-value=0.033 Score=61.32 Aligned_cols=236 Identities=13% Similarity=0.040 Sum_probs=130.2
Q ss_pred ChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhC--CCeEEEEEeCCCCH--HHHHHHhhccCCCC----CCCEEEEE
Q 039311 13 GLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTS--EQMEFLIGNQGWLM----QGSRLIIT 84 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~--~~~~~l~~~~~~~~----~gSrIivT 84 (909)
....+.++++..+.........+..+....+.+.+. +++.+|||||++.. +.+..+........ .+-.||+|
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 345666677666632111111122233444444443 56899999999763 44666655443322 46688888
Q ss_pred eCCchhhhhcC-------CCcEEECCCCCHHHHHHHHHHhhc---CCCCCCchhHHHHHHHHHHh---------CCCchH
Q 039311 85 ARDKQVLKNCG-------VDTIYEVKELFDDDARMLFSRYAF---GKNYPNVGYMELSNKIIKYA---------KGVPLA 145 (909)
Q Consensus 85 TR~~~v~~~~~-------~~~~y~l~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~iv~~c---------~GlPLa 145 (909)
|++..+..... ....+++++++.++..+++...+- .....+ .+....+++++ +|.|-.
T Consensus 166 ~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 166 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred ECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 88775443321 124799999999999999987653 222222 35677888888 788754
Q ss_pred HHHHh-Hhhc-----CC---CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeecc---CC--CCHHHHH
Q 039311 146 IKVLG-RFLC-----GR---RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFF---KG--EDKDCVI 211 (909)
Q Consensus 146 l~~lg-~~L~-----~~---~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~---~~--~~~~~li 211 (909)
+..+. .+.. +. +.+....++..... . ...-.+..|+...|.++..++.+. .+ .....+.
T Consensus 243 ~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 315 (389)
T 1fnn_A 243 AIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF---G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAE 315 (389)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC---C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh---h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHH
Confidence 44332 2221 22 34444444444321 1 122234567777777776666554 22 2333443
Q ss_pred HHHH----hcCCCc------ccchhHhhhccccEEeC--------Ce-------EEehHHHHHHHHHHhhhc
Q 039311 212 KFLD----GCGFSA------EIGISVLVDKCLMVILN--------NK-------IMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 212 ~~w~----~~g~~~------~~~i~~L~~~~li~~~~--------~~-------~~mhdll~e~~~~i~~~~ 258 (909)
+.+. ..|..+ ..+++.|.++++|.... ++ +..||+++.+...|..++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 316 ESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 3322 234322 14588899999998852 11 124566666665555443
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.52 E-value=0.028 Score=56.16 Aligned_cols=101 Identities=8% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCchhh-hhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQVL-KNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
.++.+|||||++.. +.++.+...+.....+.++|+||+...-. ... ..-..+++.+++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999764 44566665555456778999999875421 111 122389999999999999998877532221
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHhH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLGR 151 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg~ 151 (909)
-+ .+..+.+++.++|.|..+..+..
T Consensus 181 ~~--~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 181 IT--EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp BC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 34567888999999986655433
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.026 Score=60.40 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++.+|||||++. .+.++.+...+.....+.++|+||+... +.... ..-..+++.+++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 45689999999976 3445555554444456788999887643 21211 22348999999999999999887643221
Q ss_pred CCchhHHHHHHHHHHhCCCchH-HHHHhH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLA-IKVLGR 151 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLa-l~~lg~ 151 (909)
..+ .+....++++++|.|.. +..+..
T Consensus 185 ~~~--~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 185 KYT--NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111 35568899999999954 444433
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.69 E-value=0.1 Score=47.58 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=40.5
Q ss_pred EEEeeCCCCC--ccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcC
Q 039311 344 YLQWHGCPLK--SLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEH 397 (909)
Q Consensus 344 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~ 397 (909)
.++.+++.++ .+|..++ .+|++|+|++|.|+.++.+ +..+++|++|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777777 8887654 4688888888888888855 56688888888888753
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.06 E-value=0.14 Score=46.56 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=33.7
Q ss_pred EEecCCCCCC--CcccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 586 YLRLTDCGII--ELPECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 586 ~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
.++-++..++ .+|..+ .++|+.|+|++|+++.+|.. +..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666666 666443 23577777777777777653 4667777777777764
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.47 E-value=1.4 Score=46.66 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=105.3
Q ss_pred HHHHHhhCC---CeEEEEEeCCCCHH--HHHHHhhccCCC------------------CCCCEEEEEeCCchhhh-hc--
Q 039311 41 NFRSKRLSR---KKVLIVFDDVSTSE--QMEFLIGNQGWL------------------MQGSRLIITARDKQVLK-NC-- 94 (909)
Q Consensus 41 ~~i~~~L~~---kr~LlVLDDv~~~~--~~~~l~~~~~~~------------------~~gSrIivTTR~~~v~~-~~-- 94 (909)
..+...+.. +..+|+|||++... ..+.+...+... .++.++|.||....... ..
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~ 157 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT
T ss_pred HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh
Confidence 344444443 66799999997642 334333222111 12456777776543221 11
Q ss_pred CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhc------CC---CHHHHHHHH
Q 039311 95 GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC------GR---RIKDWESTI 165 (909)
Q Consensus 95 ~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~------~~---~~~~W~~~l 165 (909)
....++.+.+++.+|..+++...+......-+ .+....++++++|.|-.+..+...+. +. +.+....++
T Consensus 158 R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 158 RFGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEAL 235 (324)
T ss_dssp TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHH
T ss_pred cccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 12468999999999999999887754332211 35678899999999988776655442 11 344455544
Q ss_pred HHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcc----cchhHhhhccccEEeCC
Q 039311 166 KKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAE----IGISVLVDKCLMVILNN 239 (909)
Q Consensus 166 ~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~----~~i~~L~~~~li~~~~~ 239 (909)
..+ ...+..++..++..+...+..+.|. ....+.+. .|.... ..-+.+++.++|+....
T Consensus 236 ~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~---lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 236 AAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATA---LSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp HHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHH---TTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred HHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHH---hCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 432 2345667777777766555444433 24443332 233211 11223777888877643
Q ss_pred eEEehH
Q 039311 240 KIMMHD 245 (909)
Q Consensus 240 ~~~mhd 245 (909)
-..+-+
T Consensus 301 g~~~~~ 306 (324)
T 1hqc_A 301 GRVPTE 306 (324)
T ss_dssp EEEECH
T ss_pred cceecH
Confidence 333333
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.38 E-value=0.25 Score=52.55 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCchh-hhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQV-LKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.+||+||++. .+.++.+...+.....+.++|+||....- .... ..-..+++.+++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 5788999999975 35566666655555677899999876532 1111 112379999999999999998876543321
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHhHhh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLGRFL 153 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg~~L 153 (909)
-+ .+....+++.++|.|-.+..+...+
T Consensus 189 ~~--~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 189 LT--EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 11 3566788899999998665544333
No 179
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.66 E-value=0.26 Score=48.20 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=39.4
Q ss_pred CCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCC
Q 039311 580 GLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c 638 (909)
.-+.|+.|+|++|.+.+ +...+..-+.|+.|+|+.|.+. .+-..+..-..|++|+|++|
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34677888888887772 4555556677888888888776 23344555566777777764
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.03 E-value=1.6 Score=47.25 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.+||+||++. .+.++.+...+.....+..+|+||.... +.... .....+++.+++.++..+++...+-.....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999999975 4456666665554456678888876543 21211 123689999999999999998765322211
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
.+ .+....++++++|.|..+..+.
T Consensus 198 ~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 3456788999999998776654
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.84 E-value=2.9 Score=43.01 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=69.5
Q ss_pred hCCCeEEEEEeCCCCH------------HHHHHHhhccCC---CCCCCEEEEEeCCchhhhhc---C-CCcEEECCCCCH
Q 039311 47 LSRKKVLIVFDDVSTS------------EQMEFLIGNQGW---LMQGSRLIITARDKQVLKNC---G-VDTIYEVKELFD 107 (909)
Q Consensus 47 L~~kr~LlVLDDv~~~------------~~~~~l~~~~~~---~~~gSrIivTTR~~~v~~~~---~-~~~~y~l~~L~~ 107 (909)
.+.+..+|+|||++.. ..++.+...... .+....||.||...+.+... + ....++++++++
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 3467899999998643 223444443332 23344577788877655432 1 256789999998
Q ss_pred -HHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCC------CchHHHHHhHhhcCCCHHHHHHHHHHHhcCC
Q 039311 108 -DDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKG------VPLAIKVLGRFLCGRRIKDWESTIKKIKRIP 172 (909)
Q Consensus 108 -~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G------lPLal~~lg~~L~~~~~~~W~~~l~~L~~~~ 172 (909)
++-.+++.... ... .+....+++.+.| ++-++.++-.+-.......|+.++..+....
T Consensus 201 r~~i~~i~~~~~---~~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 201 GEQLLEALELLG---NFK----DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHHHT---CSC----HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC---CCC----HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 66666655421 111 3446777888877 4444444444333334567777777665543
No 182
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.27 E-value=0.31 Score=47.72 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=40.4
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCC---CCe-----ecchhhccCCCCCEEeecC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKN---NFE-----RIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n---~l~-----~lp~~i~~l~~L~~L~L~~ 637 (909)
-+.|+.|+|++|.+.. +...+..-..|+.|+|++| .+. .+-..+..-+.|+.|+++.
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 4678999999998883 5667777788999999865 333 2334455566777777754
No 183
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.83 E-value=5.2 Score=41.85 Aligned_cols=99 Identities=8% Similarity=0.054 Sum_probs=67.8
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.+||+||++. .+..+.+...+.....+.++|+||.... +.... ..-..+++.+++.++..+++...+-.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6688999999975 3456777776666667788888887654 22211 122489999999999999998776443322
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
-+ .+....++..++|.+-.+..+
T Consensus 181 i~--~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 181 IT--EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp BC--HHHHHHHHHTTTTCHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11 345677888899988765443
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.19 E-value=1.4 Score=49.25 Aligned_cols=123 Identities=10% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHhhCCCeEEEEEeCCCCHH----HHHHHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHH
Q 039311 43 RSKRLSRKKVLIVFDDVSTSE----QMEFLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDD 108 (909)
Q Consensus 43 i~~~L~~kr~LlVLDDv~~~~----~~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~ 108 (909)
+.+.+..+.-+|+|||++... .-+.+...+.. ...|..||+||... .+...+....++.+++++.+
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 444455467799999996432 22333332211 23577899998762 23333444468999999999
Q ss_pred HHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhH------hhcCC--CHHHHHHHHHHH
Q 039311 109 DARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGR------FLCGR--RIKDWESTIKKI 168 (909)
Q Consensus 109 es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~------~L~~~--~~~~W~~~l~~L 168 (909)
+-.+++.+.+-... ..++ +....|+++++|.+-.+..+-. .+.++ +.+.++.++..+
T Consensus 267 ~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999988774222 1122 3456778888888754432211 12333 567777776643
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.06 E-value=0.9 Score=45.59 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=58.0
Q ss_pred CeEEEEEeCCCCHH--H--HHHHhhccCC-CCCCC-EEEEEeCCch---------hhhhcCCCcEEECCCCCHHHHHHHH
Q 039311 50 KKVLIVFDDVSTSE--Q--MEFLIGNQGW-LMQGS-RLIITARDKQ---------VLKNCGVDTIYEVKELFDDDARMLF 114 (909)
Q Consensus 50 kr~LlVLDDv~~~~--~--~~~l~~~~~~-~~~gS-rIivTTR~~~---------v~~~~~~~~~y~l~~L~~~es~~LF 114 (909)
+..+|||||++... . .+.+...+.. ...|. +||+||+... +...+....++++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45688999997532 1 2223222111 11232 5888876432 2222222368999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 115 SRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 115 ~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
...+-.....-+ .+....++++++|.+-.+..+
T Consensus 184 ~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGLQLP--EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTCCCC--HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCCC--HHHHHHHHHHccCCHHHHHHH
Confidence 887643221111 356678888899887665543
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.84 E-value=4.7 Score=42.92 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=65.6
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++. .+..+.+...+.....+..+|++|.+.+ +.... ..-..+++++++.++..+.....+ ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 4678899999985 3446666666655556778888877653 33322 223589999999999999887765 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
+ .+....++..++|.|..+..+.
T Consensus 183 ~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 183 S---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp C---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred C---HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2445778899999997765543
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.71 E-value=6.4 Score=44.77 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=67.5
Q ss_pred CCeEEEEEeCCCCHH-----HHHHHhhccCCCCCCCEEEEEeCCch---hhhhcCCCcEEECCCCCHHHHHHHHHHhhcC
Q 039311 49 RKKVLIVFDDVSTSE-----QMEFLIGNQGWLMQGSRLIITARDKQ---VLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~~---v~~~~~~~~~y~l~~L~~~es~~LF~~~af~ 120 (909)
.++.+||||+|+... .+..+..... ..+.+||++|.+.. +.........+++++++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 578899999996431 1233333222 12445777766533 2221223458999999999999998877654
Q ss_pred CC-CCCchhHHHHHHHHHHhCCC-chHHHHHhHhhcC-C--CHHHHHHHHHHHhcCC
Q 039311 121 KN-YPNVGYMELSNKIIKYAKGV-PLAIKVLGRFLCG-R--RIKDWESTIKKIKRIP 172 (909)
Q Consensus 121 ~~-~~~~~~~~l~~~iv~~c~Gl-PLal~~lg~~L~~-~--~~~~W~~~l~~L~~~~ 172 (909)
.. ..++ +....|++.++|. +-|+..+...-.+ + +.+.-+.++....+..
T Consensus 225 ~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~ 278 (516)
T 1sxj_A 225 EKFKLDP---NVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNI 278 (516)
T ss_dssp HTCCCCT---THHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTT
T ss_pred cCCCCCH---HHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCC
Confidence 32 1222 3467788899994 4555555433222 1 4444445555444433
No 188
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.46 E-value=4.5 Score=41.72 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCCeEEEEEeCCCCH----------------HHHHHHhhccCC--CCCCCEEEEEeCCchhhh-----hcCCCcEEECCC
Q 039311 48 SRKKVLIVFDDVSTS----------------EQMEFLIGNQGW--LMQGSRLIITARDKQVLK-----NCGVDTIYEVKE 104 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~----------------~~~~~l~~~~~~--~~~gSrIivTTR~~~v~~-----~~~~~~~y~l~~ 104 (909)
..+..+|+|||++.. ..+..+...... ...+..||.||...+.+. ....+.++.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 345689999999653 123333333221 234567888887654333 112346899999
Q ss_pred CCHHHHHHHHHHhhcCCCC-CCchhHHHHHHHHHHhCCC-chHHHHHh------HhhcCC---CHHHHHHHHHHH
Q 039311 105 LFDDDARMLFSRYAFGKNY-PNVGYMELSNKIIKYAKGV-PLAIKVLG------RFLCGR---RIKDWESTIKKI 168 (909)
Q Consensus 105 L~~~es~~LF~~~af~~~~-~~~~~~~l~~~iv~~c~Gl-PLal~~lg------~~L~~~---~~~~W~~~l~~L 168 (909)
++.++-.++|..++.+... ...++ ..++..+.|. |-.+..+- ...+++ +.+..+.++.+.
T Consensus 188 p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 9999999999888755432 22333 4455556663 32333221 112232 566666666654
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.39 E-value=7.9 Score=41.32 Aligned_cols=99 Identities=8% Similarity=0.095 Sum_probs=61.5
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
+.-+||||++... +..+.+...+.....+.+||+||.+.. +.... ..-..+++++++.++..+.+...+-.....-
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 5669999999763 223444443333345778888887642 32222 1226899999999999999987764322110
Q ss_pred chhHHHHHHHHHHhCCCchHHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
+ -.+....|++.++|.+-.+..+
T Consensus 214 ~-~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 214 E-TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp C-CSHHHHHHHHHHTTCHHHHHHH
T ss_pred C-cHHHHHHHHHHcCCCHHHHHHH
Confidence 0 0245678888999988655443
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.33 E-value=52 Score=34.45 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=97.1
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCC------------------CCCCEEEEEeCCchhhh-h--cCCCcEEECCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWL------------------MQGSRLIITARDKQVLK-N--CGVDTIYEVKEL 105 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~------------------~~gSrIivTTR~~~v~~-~--~~~~~~y~l~~L 105 (909)
.+..+|+||+++.. +..+.+...+... .++-++|.||....... . -..+.++++..+
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 45678999999753 3333333322211 11346777766543211 1 023578999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhh------cCC---CHHHHHHHHHHHhcCCCcch
Q 039311 106 FDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFL------CGR---RIKDWESTIKKIKRIPHVDI 176 (909)
Q Consensus 106 ~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L------~~~---~~~~W~~~l~~L~~~~~~~i 176 (909)
+.++..+++...+-..... --.+..+.+++.+.|.|-.+..+...+ .+. +.+..+.++..
T Consensus 185 ~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~--------- 253 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS--------- 253 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH---------
Confidence 9999999998776432211 113556778888999985444333221 111 34444444433
Q ss_pred hhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCc---ccchh-HhhhccccEEe-CCeEEehHHHHH
Q 039311 177 QKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSA---EIGIS-VLVDKCLMVIL-NNKIMMHDLLQE 249 (909)
Q Consensus 177 ~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~---~~~i~-~L~~~~li~~~-~~~~~mhdll~e 249 (909)
+..+..+++..++..+..++-. .+. ....+.+. .|... ...++ .|++.++|... .|++.-.--++.
T Consensus 254 ---~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~~~ 326 (338)
T 3pfi_A 254 ---LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA---LSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSA 326 (338)
T ss_dssp ---HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH---TTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred ---hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH---hCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHHHH
Confidence 2333445555544444333333 222 23333332 23311 12344 78889999877 455555444444
Q ss_pred HH
Q 039311 250 MG 251 (909)
Q Consensus 250 ~~ 251 (909)
++
T Consensus 327 ~~ 328 (338)
T 3pfi_A 327 LK 328 (338)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.97 E-value=25 Score=37.16 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=63.6
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
.++-+|++|+++. .+..+.+...+.......++|++|.... +.... ..-..+++.+++.++..+.+...+-.....
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 3556999999974 3334555544443445678888875442 22211 111379999999999999988776433321
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
-+ .+..+.++++++|.|-.+..+.
T Consensus 212 i~--~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 212 CD--DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CC--HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 3567889999999987655443
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=63.24 E-value=35 Score=34.18 Aligned_cols=95 Identities=9% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCH-----------------HHHHHHhhccCCC--CCCCEEEEEeCCchhhhh-c----CCCcEEECCC
Q 039311 49 RKKVLIVFDDVSTS-----------------EQMEFLIGNQGWL--MQGSRLIITARDKQVLKN-C----GVDTIYEVKE 104 (909)
Q Consensus 49 ~kr~LlVLDDv~~~-----------------~~~~~l~~~~~~~--~~gSrIivTTR~~~v~~~-~----~~~~~y~l~~ 104 (909)
....+|+|||++.. ..+..+...+... ..+-.||.||.....+.. . ..+..+.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 45789999999864 1133333333222 235567777766543221 1 2357899999
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 105 LFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 105 L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
.+.++-.+++..++-..... .........+++.+.|.+-
T Consensus 177 p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCH
T ss_pred cCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCH
Confidence 99999999998876433221 2222234677778888754
No 193
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=62.70 E-value=15 Score=38.74 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhcCCCCcccCCccchHHHHHhh---CCCeEEEEEeCCCCHHHHHHHhhccCCC-CCCCEE--EEEeCC
Q 039311 14 LAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRL---SRKKVLIVFDDVSTSEQMEFLIGNQGWL-MQGSRL--IITARD 87 (909)
Q Consensus 14 ~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~~-~~gSrI--ivTTR~ 87 (909)
...+..+|+.++.+ .........+....+.+.+ ++++++||||+++...+-+.+...+.|. ..+|++ |.++.+
T Consensus 94 ~~~~~~~I~~~L~g-~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 94 MDALYEKIWFAISK-ENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp -HHHHHHHHHHHSC-CC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecC
Confidence 34677788888863 3222222222233333433 4678999999998753322222222221 234444 344544
Q ss_pred chh---------hhhcCCCcEEECCCCCHHHHHHHHHHhh
Q 039311 88 KQV---------LKNCGVDTIYEVKELFDDDARMLFSRYA 118 (909)
Q Consensus 88 ~~v---------~~~~~~~~~y~l~~L~~~es~~LF~~~a 118 (909)
.+. ...++ ...+..++++.+|-.+++...+
T Consensus 173 ~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 173 NVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp SCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred cccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 332 22332 2478999999999999887664
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=61.03 E-value=20 Score=37.64 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=55.1
Q ss_pred CeEEEEEeCCCCHH---HHHHHhhccCCCCCCCEEEEEeCCch-----hhhhcCCCcEEECCCCCHHHHHHHH-------
Q 039311 50 KKVLIVFDDVSTSE---QMEFLIGNQGWLMQGSRLIITARDKQ-----VLKNCGVDTIYEVKELFDDDARMLF------- 114 (909)
Q Consensus 50 kr~LlVLDDv~~~~---~~~~l~~~~~~~~~gSrIivTTR~~~-----v~~~~~~~~~y~l~~L~~~es~~LF------- 114 (909)
++-+|||||++... +.+.+...+.....+.+||+||.... +...+ .+++++.++.++-.+++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHHHHHHHHHHHH
Confidence 78899999998754 45555544433335678888887643 22222 47999999988843332
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHhCCCchHH
Q 039311 115 SRYAFGKNYPNVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 115 ~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal 146 (909)
...+-.....-+ -.+....++++++|.+-.+
T Consensus 182 ~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 182 TEICKHEGIAIA-DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHH
Confidence 222211111111 0256677888888876543
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=54.86 E-value=17 Score=38.16 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=53.7
Q ss_pred eEEEEEeCCCCHH----HHHHHhhccC-CCCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 51 KVLIVFDDVSTSE----QMEFLIGNQG-WLMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 51 r~LlVLDDv~~~~----~~~~l~~~~~-~~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
.-+|+||||+... ..+.+...+. ....|.+||+||... .+...+....++++++ +.++-.+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 5689999996532 1222322221 123566888888532 2333334446899999 99999999988
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCc
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVP 143 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlP 143 (909)
.+......-+ .+....+++++ |..
T Consensus 178 ~~~~~~~~l~--~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 178 KLKEFNLELR--KEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHTTCCCC--HHHHHHHHHHC-SSH
T ss_pred HHHhcCCCCC--HHHHHHHHHhC-CCH
Confidence 8753322111 34556677777 654
No 196
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=54.30 E-value=74 Score=33.13 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCCHH-------------HHHHHhhcc---CCCCCCCEEEEEeCCchhhhhc---CCCcEEECCCCCHHH
Q 039311 49 RKKVLIVFDDVSTSE-------------QMEFLIGNQ---GWLMQGSRLIITARDKQVLKNC---GVDTIYEVKELFDDD 109 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~-------------~~~~l~~~~---~~~~~gSrIivTTR~~~v~~~~---~~~~~y~l~~L~~~e 109 (909)
.+..+|+||+++... ....+...+ .....+..||.||...+.+... ..+..+.+...+.++
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 188 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHH
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHH
Confidence 456899999997431 122332222 2234556777788764332210 245688999999999
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCC
Q 039311 110 ARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGV 142 (909)
Q Consensus 110 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 142 (909)
-.++|..++.+...... ......+++++.|.
T Consensus 189 r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 189 RTTMFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred HHHHHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 99999988754332211 23346677777774
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=53.25 E-value=60 Score=34.52 Aligned_cols=99 Identities=6% Similarity=-0.006 Sum_probs=56.4
Q ss_pred CCeEEEEEeCCCCH-------------HHHHHHhhccC----CCCCCCEEEEEeCCchhhhh-c--CCCcEEECCCCCHH
Q 039311 49 RKKVLIVFDDVSTS-------------EQMEFLIGNQG----WLMQGSRLIITARDKQVLKN-C--GVDTIYEVKELFDD 108 (909)
Q Consensus 49 ~kr~LlVLDDv~~~-------------~~~~~l~~~~~----~~~~gSrIivTTR~~~v~~~-~--~~~~~y~l~~L~~~ 108 (909)
.+..+|+||+++.. .....+...+. ....+-.||.||...+.+.. . ..+..+.+...+.+
T Consensus 175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~ 254 (357)
T 3d8b_A 175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS 254 (357)
T ss_dssp TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence 45689999999532 11223332222 12234466667765432211 1 33568899999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCC-chHHHHH
Q 039311 109 DARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGV-PLAIKVL 149 (909)
Q Consensus 109 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl-PLal~~l 149 (909)
+-.+++...+-.....-. .+....+++.+.|. +-++..+
T Consensus 255 ~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 255 ARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp HHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHHH
Confidence 999998877643221111 24566778888884 4445444
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=49.06 E-value=1.1e+02 Score=32.32 Aligned_cols=90 Identities=12% Similarity=-0.021 Sum_probs=53.7
Q ss_pred CCeEEEEEeCCCCHH-------------HHHHHhhcc---CCCCCCCEEEEEeCCch-----hhhhcCCCcEEECCCCCH
Q 039311 49 RKKVLIVFDDVSTSE-------------QMEFLIGNQ---GWLMQGSRLIITARDKQ-----VLKNCGVDTIYEVKELFD 107 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~-------------~~~~l~~~~---~~~~~gSrIivTTR~~~-----v~~~~~~~~~y~l~~L~~ 107 (909)
.+..+|+||+++... ....+...+ .....+-.||.||...+ +.. ..+..+.+...+.
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~ 219 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDL 219 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCH
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCH
Confidence 467899999997532 122222222 22234556676776543 333 3567889999999
Q ss_pred HHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCC
Q 039311 108 DDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGV 142 (909)
Q Consensus 108 ~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 142 (909)
++-.+++..++-+...... ......+++++.|.
T Consensus 220 ~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCC
Confidence 9999999887744322111 23346677778774
No 199
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=48.52 E-value=25 Score=36.36 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=47.7
Q ss_pred eEEEEEeCCC-----------CHHHHHHHhhccCCCCCCCEEEEEeCCc----------hhhhhcCCCcEEECCCCCHHH
Q 039311 51 KVLIVFDDVS-----------TSEQMEFLIGNQGWLMQGSRLIITARDK----------QVLKNCGVDTIYEVKELFDDD 109 (909)
Q Consensus 51 r~LlVLDDv~-----------~~~~~~~l~~~~~~~~~gSrIivTTR~~----------~v~~~~~~~~~y~l~~L~~~e 109 (909)
.-+|+||+++ ..+..+.+...+.....+.+||.||... .+...+ +.++++++++.++
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~ 208 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEE 208 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHH
Confidence 4589999998 4444566665555445667888888643 333333 4689999999999
Q ss_pred HHHHHHHhhcC
Q 039311 110 ARMLFSRYAFG 120 (909)
Q Consensus 110 s~~LF~~~af~ 120 (909)
-.+++...+-.
T Consensus 209 ~~~il~~~l~~ 219 (309)
T 3syl_A 209 LFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=48.46 E-value=1.3e+02 Score=31.24 Aligned_cols=99 Identities=9% Similarity=0.001 Sum_probs=57.1
Q ss_pred CCeEEEEEeCCCCH-------------HHHHHHhhccCC---CCCCCEEEEEeCCchhhhhc---CCCcEEECCCCCHHH
Q 039311 49 RKKVLIVFDDVSTS-------------EQMEFLIGNQGW---LMQGSRLIITARDKQVLKNC---GVDTIYEVKELFDDD 109 (909)
Q Consensus 49 ~kr~LlVLDDv~~~-------------~~~~~l~~~~~~---~~~gSrIivTTR~~~v~~~~---~~~~~y~l~~L~~~e 109 (909)
.+..+|+||+++.. .....+...+.. ...+-.||.||...+.+... ..+..+.+...+.++
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHH
Confidence 56789999999754 112223222221 23445566677544322110 356789999999999
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCc-hHHHHH
Q 039311 110 ARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVP-LAIKVL 149 (909)
Q Consensus 110 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlP-Lal~~l 149 (909)
-.+++..+.-+...... ......+++.+.|.. -.|..+
T Consensus 184 r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp HHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 99999887643322111 234567777888763 334433
No 201
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=44.02 E-value=58 Score=34.27 Aligned_cols=100 Identities=12% Similarity=-0.008 Sum_probs=65.7
Q ss_pred hCCCeEEEEEeCCCC---HHHHHHHhhccCCCCCCCEEEEEeCC-------chhhhhcC-CCcEEECCCCCHHHHHHHHH
Q 039311 47 LSRKKVLIVFDDVST---SEQMEFLIGNQGWLMQGSRLIITARD-------KQVLKNCG-VDTIYEVKELFDDDARMLFS 115 (909)
Q Consensus 47 L~~kr~LlVLDDv~~---~~~~~~l~~~~~~~~~gSrIivTTR~-------~~v~~~~~-~~~~y~l~~L~~~es~~LF~ 115 (909)
+-+++-++|+|+++. .+.++.+...+....++..+|++|.. +.+..... ...+++..+++.++..+...
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 356677888999864 45677777766655578888877743 24444432 33689999999998887776
Q ss_pred HhhcCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 039311 116 RYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 116 ~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
..+-.....-+ .+....+++.++|...++..
T Consensus 153 ~~~~~~g~~i~--~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNLELD--DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTCEEC--HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCCCCC--HHHHHHHHHHhchHHHHHHH
Confidence 65532221111 34577788888888776654
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=43.30 E-value=1.5e+02 Score=31.74 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=55.0
Q ss_pred CCeEEEEEeCCCCH-------------HHHHHHhhcc----CCCCCCCEEEEEeCCchhhhh-c--CCCcEEECCCCCHH
Q 039311 49 RKKVLIVFDDVSTS-------------EQMEFLIGNQ----GWLMQGSRLIITARDKQVLKN-C--GVDTIYEVKELFDD 108 (909)
Q Consensus 49 ~kr~LlVLDDv~~~-------------~~~~~l~~~~----~~~~~gSrIivTTR~~~v~~~-~--~~~~~y~l~~L~~~ 108 (909)
.+..+|+||+|+.. .....+...+ ......-+||.||...+-+.. . .....+.+...+.+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~ 285 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHH
Confidence 35579999999643 1112222211 111233456667765332211 1 23467899999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCch-HHHHH
Q 039311 109 DARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPL-AIKVL 149 (909)
Q Consensus 109 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPL-al~~l 149 (909)
+-.+++...+-.....-. .+....+++.+.|..- ++..+
T Consensus 286 ~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 286 TRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp HHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 999999877744332211 2355678888888654 44443
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=41.83 E-value=1.9e+02 Score=31.71 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=56.4
Q ss_pred CCeEEEEEeCCCCH-------------HHHHHHhhccCCC---CCCCEEEEEeCCchhhhh---cCCCcEEECCCCCHHH
Q 039311 49 RKKVLIVFDDVSTS-------------EQMEFLIGNQGWL---MQGSRLIITARDKQVLKN---CGVDTIYEVKELFDDD 109 (909)
Q Consensus 49 ~kr~LlVLDDv~~~-------------~~~~~l~~~~~~~---~~gSrIivTTR~~~v~~~---~~~~~~y~l~~L~~~e 109 (909)
.+..+|+||+|+.. .....+...+... ..+-.||.||.....+.. -..+..+.+...+.++
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHH
Confidence 46789999999854 1233444444332 345677777765432221 0345789999999999
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCC
Q 039311 110 ARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGV 142 (909)
Q Consensus 110 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 142 (909)
-.++|..++-+...... ......+++.+.|.
T Consensus 306 r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~ 336 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLT--EADFQELGRKTDGY 336 (444)
T ss_dssp HHHHHHHHHTTSCEECC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCC
Confidence 99999887743321111 23345677778874
No 204
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=37.78 E-value=20 Score=34.65 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=39.3
Q ss_pred chHHHHHhhCCCeE-EEEEeCCCCH-----HHHHHHhhccCCCCCCCEEEEEeCCch--hhhhcCCCcEEECCCCC
Q 039311 39 GLNFRSKRLSRKKV-LIVFDDVSTS-----EQMEFLIGNQGWLMQGSRLIITARDKQ--VLKNCGVDTIYEVKELF 106 (909)
Q Consensus 39 ~~~~i~~~L~~kr~-LlVLDDv~~~-----~~~~~l~~~~~~~~~gSrIivTTR~~~--v~~~~~~~~~y~l~~L~ 106 (909)
.-+.+++.+.+.+| |||||++... -..+.+...+...-.+--||+|+|... +.+. +|.+-+|....
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~--AD~VTem~~vk 181 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL--ADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH--CSEEEECCCSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh--Ccceeeeccee
Confidence 45567777766665 9999999432 112333333332336678999999962 2222 45566666554
No 205
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=34.18 E-value=84 Score=33.21 Aligned_cols=90 Identities=12% Similarity=0.073 Sum_probs=55.4
Q ss_pred EEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-----------------chhhhhcCCCcEEECCCCCHHHHHH
Q 039311 52 VLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-----------------KQVLKNCGVDTIYEVKELFDDDARM 112 (909)
Q Consensus 52 ~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-----------------~~v~~~~~~~~~y~l~~L~~~es~~ 112 (909)
.+|+||+++.. +..+.+...+...... .||++|.. ..+...+ ..+++.+++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHH
Confidence 49999999754 4455565555433333 44444431 2233333 358999999999999
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHhC-CCchHHH
Q 039311 113 LFSRYAFGKNYPNVGYMELSNKIIKYAK-GVPLAIK 147 (909)
Q Consensus 113 LF~~~af~~~~~~~~~~~l~~~iv~~c~-GlPLal~ 147 (909)
++...+-.....- -.+....+++++. |.|-.+.
T Consensus 267 il~~~~~~~~~~~--~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 267 ILRIRCEEEDVEM--SEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHHHHHTTCCB--CHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHhcCCCHHHHH
Confidence 9987764322211 1356678888887 7775444
No 206
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=31.56 E-value=73 Score=25.92 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=62.2
Q ss_pred CCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhc-------CCCcEEECCCCCH
Q 039311 35 CPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNC-------GVDTIYEVKELFD 107 (909)
Q Consensus 35 ~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~-------~~~~~y~l~~L~~ 107 (909)
+-++++..|++...+.-|-+ -||.+.+.+..-...+....+--+|+|++.+++++..| |- +++-+-.-.+
T Consensus 10 nndelikkikkevenqgyqv--rdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgy-kvflllqdqd 86 (134)
T 2lci_A 10 NNDELIKKIKKEVENQGYQV--RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGY-KVFLLLQDQD 86 (134)
T ss_dssp SCHHHHHHHHHHTTTTTCEE--EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTC-CEEEEEECSC
T ss_pred CcHHHHHHHHHHHHccCeee--eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCc-eeEEEeecCc
Confidence 34567888999888887753 57887777654433332233445899999999988766 32 3333333344
Q ss_pred HHHHHHHHHhhcCCCC------CCchhHHHHHHHHHHhC
Q 039311 108 DDARMLFSRYAFGKNY------PNVGYMELSNKIIKYAK 140 (909)
Q Consensus 108 ~es~~LF~~~af~~~~------~~~~~~~l~~~iv~~c~ 140 (909)
+.-++=|.++.-.+.+ .+++-..+.++...++|
T Consensus 87 eneleefkrkiesqgyevrkvtddeealkivrefmqkag 125 (134)
T 2lci_A 87 ENELEEFKRKIESQGYEVRKVTDDEEALKIVREFMQKAG 125 (134)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCeeeeecCChHHHHHHHHHHHHhcc
Confidence 5556667776644331 22333445555555543
No 207
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.73 E-value=1.6e+02 Score=32.22 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=54.9
Q ss_pred CCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEE-EeCCch--hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCC
Q 039311 48 SRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLII-TARDKQ--VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGK 121 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIiv-TTR~~~--v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~ 121 (909)
..++.+|+||+|+.. .+.+.+...+.. + .-++|. ||.+.. +.... ..-.++.+++++.++..+++.+.+-..
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 357899999999754 334444443332 1 123443 444432 11111 223489999999999999988776431
Q ss_pred CC----CCc-hhHHHHHHHHHHhCCCchHHH
Q 039311 122 NY----PNV-GYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 122 ~~----~~~-~~~~l~~~iv~~c~GlPLal~ 147 (909)
.. ... =-.+....++++++|.+-.+.
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 10 111 113566778888888775444
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=27.46 E-value=3e+02 Score=27.69 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCCeEEEEEeCCCCH-------------HHHHHHhh---ccCC--CCCCCEEEEEeCCch-----hhhhcCCCcEEECCC
Q 039311 48 SRKKVLIVFDDVSTS-------------EQMEFLIG---NQGW--LMQGSRLIITARDKQ-----VLKNCGVDTIYEVKE 104 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~-------------~~~~~l~~---~~~~--~~~gSrIivTTR~~~-----v~~~~~~~~~y~l~~ 104 (909)
..+..+|+||+++.. .....+.. .... .+.+-.||.||...+ +... .+..+.+..
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~ 188 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSL 188 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEEECCC
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCC
Confidence 346689999999643 11112222 1221 123456777787643 2332 346788899
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCch-HHHHH
Q 039311 105 LFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPL-AIKVL 149 (909)
Q Consensus 105 L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPL-al~~l 149 (909)
.+.++-.+++...+-.....-. .+....+++.+.|.+- ++..+
T Consensus 189 p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 9999988888776643222111 2345678888888875 44443
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.93 E-value=2.1e+02 Score=29.68 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
..+-++|+|+++. .+..+.+...+.......++|++|.... +.... ..-..+++.+++.++..+.....+-.....
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK 188 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC
Confidence 3477889999964 3444555444433345667787775542 21111 112478999999999888877655222211
Q ss_pred CchhHHHHHHHHHHhCCCchHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
-+ .+..+.+++.++|.+-.+.
T Consensus 189 i~--~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 189 LS--PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp BC--HHHHHHHHHHHTTCHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHH
Confidence 11 3456788888999876443
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=24.45 E-value=3.9e+02 Score=27.12 Aligned_cols=93 Identities=8% Similarity=0.096 Sum_probs=53.3
Q ss_pred CCCeEEEEEeCCCCHHH----------------HHHHhhccCC--CCCCCEEEEEeCCchhhhh-----cCCCcEEECCC
Q 039311 48 SRKKVLIVFDDVSTSEQ----------------MEFLIGNQGW--LMQGSRLIITARDKQVLKN-----CGVDTIYEVKE 104 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~~~----------------~~~l~~~~~~--~~~gSrIivTTR~~~v~~~-----~~~~~~y~l~~ 104 (909)
..+..+|+||+++.... ...+...+.. ...+-.||.||...+.+.. -..+..+.+..
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCC
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCC
Confidence 34568999999974211 2223322221 1235677888876543321 13457899999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCch
Q 039311 105 LFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 105 L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPL 144 (909)
.+.++-.+++..+.-+.. ..+.++. .++..+.|.|-
T Consensus 186 p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 186 PDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCH
T ss_pred cCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCH
Confidence 999999999877663322 1222333 34445666553
No 211
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=24.10 E-value=56 Score=33.95 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=49.9
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhcCCCcEEECCCCCHHHHHHHHHHhh
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDK-QVLKNCGVDTIYEVKELFDDDARMLFSRYA 118 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~~~~~y~l~~L~~~es~~LF~~~a 118 (909)
+++-++|+|+++. .+..+.|...+....+.+++|++|.+. .+......- +++++++++++..+...+.+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 4567889999975 445666766665455678888777554 455555444 89999999999999887765
No 212
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=20.52 E-value=44 Score=19.53 Aligned_cols=14 Identities=50% Similarity=0.954 Sum_probs=7.4
Q ss_pred cCCCCCCCC-CCCCc
Q 039311 886 QGELPLQPP-PPPKR 899 (909)
Q Consensus 886 ~~~~~~~~~-~~~~~ 899 (909)
|+-.-+||| |||+-
T Consensus 3 qrhsivqppapppna 17 (26)
T 2lkw_A 3 QRHSIVQPPAPPPNA 17 (26)
T ss_pred cccccccCCCcCCCe
Confidence 344456666 55553
Done!