Query 039312
Match_columns 579
No_of_seqs 194 out of 2225
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 14:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 5E-29 1.7E-33 268.3 35.6 416 22-509 9-448 (491)
2 2xut_A Proton/peptide symporte 100.0 3.2E-29 1.1E-33 272.1 24.2 441 23-509 9-467 (524)
3 3o7q_A L-fucose-proton symport 99.9 1.8E-23 6E-28 221.1 38.6 354 23-511 23-409 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-24 5.2E-29 230.1 28.1 373 26-510 28-410 (451)
5 4gc0_A D-xylose-proton symport 99.9 2.5E-22 8.4E-27 215.8 30.6 155 60-225 53-215 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1.5E-21 5E-26 202.3 17.5 165 30-224 4-168 (375)
7 2cfq_A Lactose permease; trans 99.8 2.3E-20 8E-25 196.6 12.7 366 26-510 7-376 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 6.3E-12 2.1E-16 132.6 17.3 178 26-230 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 7.7E-11 2.6E-15 123.8 20.5 168 26-225 258-427 (438)
10 2cfq_A Lactose permease; trans 99.2 1.7E-10 5.8E-15 121.0 15.0 174 28-230 222-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 1.6E-09 5.3E-14 115.8 12.4 186 27-233 284-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 3.3E-08 1.1E-12 105.4 20.4 183 27-234 277-466 (491)
13 2gfp_A EMRD, multidrug resista 98.8 3.9E-09 1.3E-13 108.5 5.5 164 26-217 199-363 (375)
14 2xut_A Proton/peptide symporte 97.9 0.00014 4.8E-09 77.8 15.6 116 368-509 56-174 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=5e-29 Score=268.25 Aligned_cols=416 Identities=14% Similarity=0.218 Sum_probs=283.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHh-----cCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHH
Q 039312 22 PGGWRAIKYILGNETFEKLASMSLISNITVYLQNN-----YNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTL 96 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l 96 (579)
+++++.++.+.+..+++++++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~ 88 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV 88 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 45678889999999999999999999999999998 9999999999999999999999999999999944999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhh
Q 039312 97 LVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRA 176 (579)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 176 (579)
+++.++..++.+++.++. +.+.++++|+++|++.|...++..++++|++|+++ +
T Consensus 89 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~ 142 (491)
T 4aps_A 89 FWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----R 142 (491)
T ss_dssp HHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----T
T ss_pred HHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----c
Confidence 999999999998887765 45678999999999999999999999999999633 3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecC---CCC-ChhhHHHHHHH
Q 039312 177 QLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIK---PAG-SVFSDMAKVVV 252 (579)
Q Consensus 177 ~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~v~~ 252 (579)
.|+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++++++..+++.+++ +.. .+.++..+...
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 36788998999999999999999999998899999999987776666555554433322211 111 11111111000
Q ss_pred --------------HHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhH
Q 039312 253 --------------AACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQ 318 (579)
Q Consensus 253 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (579)
........ +. + +..... ............. ..|+... ..
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~----~~-----~--~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~-~~ 275 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWN----SL-----P--AYINLL--TIVAIAIPVFYFA-------------WMISSVK-VT 275 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSC----CT-----T--HHHHHH--HHHHHHHHHHHHH-------------HHC-------
T ss_pred HHHHHHHHHHHHHHHHHhccCc----cc-----c--cchhhh--hHHHHHHHHHHHH-------------HHhhccc-cc
Confidence 00000000 00 0 000000 0000000000000 0000000 01
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhccchHHHHHhhh-cCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhh
Q 039312 319 VEQLKCLIAILPVCVSGIACFISMDQQNTFGILQAIQ-MNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKI 397 (579)
Q Consensus 319 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~ 397 (579)
..++++.....++++....++..+.+..+....+... .+.+. ...+.+...+.+..++..++.+++.+ |+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~----r~ 346 (491)
T 4aps_A 276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLWT----AW 346 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHHHHHHHHHH----HH
Confidence 1233444445566666677777777766654443322 22221 34566777788888888888877744 44
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039312 398 AGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMP 477 (579)
Q Consensus 398 ~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P 477 (579)
.+|+ ......+..|.++.++++++....... . ....+.+++++++.+++.+++.....|..++++.+.+|
T Consensus 347 ~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 347 KKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------Y-GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------C-CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred hccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------c-CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 3332 355677778888888887776654311 0 11123466777888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 039312 478 ESMRTVAGAAFFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 478 ~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
++.||+++|+.+...++|+.+++.+.+.+.+.
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998877654
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.2e-29 Score=272.11 Aligned_cols=441 Identities=20% Similarity=0.274 Sum_probs=277.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcC------CchhHHHHHHHHHHHHHHHhhhhhHHHhhccc-ChhHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYN------LGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL-GRFRT 95 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~------~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~-Gr~~~ 95 (579)
++++.++.+.+..++.++++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~ 87 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT 87 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence 345677788889999999999999999999999999 999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhh
Q 039312 96 LLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGR 175 (579)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 175 (579)
++++.++..++.+++.++. .+.+.++++|++.|++.+...+...++++|++|++ ++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~r 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS---NK 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT---TT
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc---ch
Confidence 9999999999888877753 14567889999999999999999999999999953 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHH
Q 039312 176 AQLESFFNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAAC 255 (579)
Q Consensus 176 ~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (579)
..+.+.+++++.+.++|.+++|.+++++.+..||++.|++.++..+++++.++...++..++++++++..+..+......
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 44566778888899999999999999998888999999998877666655555444433222222211111111111111
Q ss_pred HhcccccCCCCCCcccCCcc----ccccccCcccchhhhhhcccCCCcccccCCCCCCCcc-------ccchhHHHHHHH
Q 039312 256 RKRCFSVEPGCEHNYYDPPL----MIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWR-------LCSLQQVEQLKC 324 (579)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~k~ 324 (579)
+++..+.+ .. ........ .....+.+....+........-.+|. + ...+|+ .......++.|+
T Consensus 224 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (524)
T 2xut_A 224 LTKVEGKG-NI-GLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-V---GAGASLQLERARKSHPDAAVDGVRS 297 (524)
T ss_dssp ---CTTHH-HH-HHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-H---HTGGGTHHHHSCCSCCSSSSTTTTT
T ss_pred hhhhcccC-cc-chhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-c---ccchhhHHhhhhccccHhHHHHHHH
Confidence 11100000 00 00000000 00000000000000000000000000 0 001110 000001122344
Q ss_pred HHhhhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCC
Q 039312 325 LIAILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRL 404 (579)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~ 404 (579)
.+....++.....++..+.+..+.+..+...++... + .+.+.+...+.+..++..++.+++..+..+|+.++ .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 370 (524)
T 2xut_A 298 VLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---L 370 (524)
T ss_dssp HHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---C
Confidence 444455555556666667776666655554443321 1 24566677777777888888888765655654322 3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHH
Q 039312 405 TLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVA 484 (579)
Q Consensus 405 ~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~ 484 (579)
...+++..|+++.++++++.+.....+ +.....+.+++++.+++.++++....|..++++.+.+|++.||++
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 442 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMM--------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTT--------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHH
Confidence 556677788888888876665432100 001123566778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 039312 485 GAAFFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 485 ~gi~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
+|++++..++|+.+++.+.+.+.+.
T Consensus 443 ~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 443 MSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999988763
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.8e-23 Score=221.11 Aligned_cols=354 Identities=9% Similarity=0.004 Sum_probs=228.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH
Q 039312 23 GGWRAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA 102 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~ 102 (579)
+.++.+..+.+..++..+..+.+.. +.+++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHH
Confidence 3445555555566666666554444 4556788999999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHH---HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhh
Q 039312 103 SLLGMLMM---TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLE 179 (579)
Q Consensus 103 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 179 (579)
..++.+++ ..+. +++.++++|++.|++.|...+...++++|.+|+ ++|+
T Consensus 101 ~~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~r~ 152 (438)
T 3o7q_A 101 YALGAALFWPAAEIM----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE------SSGH 152 (438)
T ss_dssp HHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS------TTHH
T ss_pred HHHHHHHHHhccccc----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc------hhHH
Confidence 99999888 4433 678899999999999999999999999999995 4467
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhc-cc
Q 039312 180 SFFNWWYFSFTVALVVVLTGVVYIQ-TNVS-------------------------WVLGFAIPTACLAFSITLFLLG-RR 232 (579)
Q Consensus 180 ~~~~~~~~~~~ig~~i~~~~~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~-~~ 232 (579)
+.+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..+++++. .|
T Consensus 153 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p 232 (438)
T 3o7q_A 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7788999999999999999999887 5444 9999977666544444433332 11
Q ss_pred eeeecCCCCChhhHHHHHHHHHHHhcccccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCcc
Q 039312 233 CYIYIKPAGSVFSDMAKVVVAACRKRCFSVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWR 312 (579)
Q Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~ 312 (579)
+..++++++++ + .
T Consensus 233 ~~~~~~~~~~~---------------------~-------------------~--------------------------- 245 (438)
T 3o7q_A 233 ALQSDNHSDAK---------------------Q-------------------G--------------------------- 245 (438)
T ss_dssp CCTTTCCCCSS---------------------T-------------------T---------------------------
T ss_pred ccccccccccc---------------------c-------------------c---------------------------
Confidence 11000000000 0 0
Q ss_pred ccchhHHHHHHHHHh---hhhHHHHHHHHHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHH
Q 039312 313 LCSLQQVEQLKCLIA---ILPVCVSGIACFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERL 389 (579)
Q Consensus 313 ~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~ 389 (579)
...+..+..++ .....+...++...+........... +....+. -....+.+..+..+..++..++..++
T Consensus 246 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l 318 (438)
T 3o7q_A 246 ----SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA--VEEIPGM-TAGFAANYLTGTMVCFFIGRFTGTWL 318 (438)
T ss_dssp ----SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHSTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 11111111111111111111111110 1111110 00123344455555666666666666
Q ss_pred HHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 039312 390 YIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIM 469 (579)
Q Consensus 390 ~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~ 469 (579)
. +|+ .+.+.+..+.++.+++.+...... +. +.+..+++.+++.....|..+
T Consensus 319 ~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 319 I----SRF-------APHKVLAAYALIAMALCLISAFAG-----------------GH-VGLIALTLCSAFMSIQYPTIF 369 (438)
T ss_dssp H----HHS-------CHHHHHHHHHHHHHHHHHHHHHCC-----------------HH-HHHHHHHHHHHHHTTHHHHHH
T ss_pred H----HHh-------cchHHHHHHHHHHHHHHHHHHHcC-----------------Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 4 342 233556666766666665554432 22 234445777888888999999
Q ss_pred HHhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 039312 470 EFFTNQMPESMRTVAGAAFFLSLSVASYVSSLVINIIHRVTK 511 (579)
Q Consensus 470 ~~~~~~~P~~~rg~~~gi~~~~~~ig~~l~~~l~~~v~~~~~ 511 (579)
.+..+..|++ ++.+.++.. ...+|+.+++.+.+.+.+..+
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999999977 888888877 567999999999999887754
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=1.5e-24 Score=230.08 Aligned_cols=373 Identities=12% Similarity=0.010 Sum_probs=234.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
+.++.+.+..++..+..+.+...+ +++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||++++++.++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHH
Confidence 344445555556555555555555 4556677 999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHH----HhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 106 GMLMMTL----TAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 106 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+.+++.+ +. +++.++++|++.|++.+...+...+++.|.+|+ ++|+++
T Consensus 105 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~------~~r~~~ 156 (451)
T 1pw4_A 105 VMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ------KERGGI 156 (451)
T ss_dssp HHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT------THHHHH
T ss_pred HHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc------hhhhHH
Confidence 9999988 55 456789999999999999999999999999984 456888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccc
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCF 260 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (579)
+++++.+.++|.+++|.+++++.+..| |++.|++.++..++..++.++..++..+.....+.
T Consensus 157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 219 (451)
T 1pw4_A 157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----------------- 219 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-----------------
Confidence 999999999999999999999888888 99999988876655544443333321111000000
Q ss_pred ccCCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHh---hhhHHHHHHH
Q 039312 261 SVEPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIA---ILPVCVSGIA 337 (579)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~ 337 (579)
.+.. ..+. ++. .++. + ...+++ +. ..+..++ ...+.+...+
T Consensus 220 --~~~~------~~~~------~~~--~~~~-----------~---~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~ 263 (451)
T 1pw4_A 220 --EEYK------NDYP------DDY--NEKA-----------E---QELTAK-----QI-FMQYVLPNKLLWYIAIANVF 263 (451)
T ss_dssp --TTTC------CC-----------------------------------CCT-----HH-HHHHTSSCHHHHHHHHHHHH
T ss_pred --hhhc------cccc------ccc--hhhh-----------h---cccccc-----cc-hHHHHHcCHHHHHHHHHHHH
Confidence 0000 0000 000 0000 0 000000 00 0011111 1111111111
Q ss_pred HHHhhhccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHH
Q 039312 338 CFISMDQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMS 417 (579)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~ 417 (579)
....+...... ....+....+. -....+.+.....++.++..++..++ .+|+.+ .+.+.+..+.++.
T Consensus 264 ~~~~~~~~~~~---~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 264 VYLLRYGILDW---SPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHH---HHHHBTTBSCC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHH
Confidence 11111111111 12222222220 00112344555566666666776666 344310 1224444444444
Q ss_pred H-HHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHHHHHHHHH-H
Q 039312 418 I-LCMLVAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAAFFLSLSV-A 495 (579)
Q Consensus 418 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi~~~~~~i-g 495 (579)
. ++++...... ..+.+.++...++.+++.....+..+.+..+.+|++.||+++|+.+....+ |
T Consensus 331 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 395 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395 (451)
T ss_dssp HHHHHHHTTSCC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 3 4444433221 124455666677888888888888899999999999999999999999999 9
Q ss_pred HHHHHHHHHHhhccc
Q 039312 496 SYVSSLVINIIHRVT 510 (579)
Q Consensus 496 ~~l~~~l~~~v~~~~ 510 (579)
..+++.+.+.+.+..
T Consensus 396 ~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 396 SVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887764
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=2.5e-22 Score=215.80 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=113.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHH
Q 039312 60 GGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFC 139 (579)
Q Consensus 60 s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (579)
+..+.+++.+++.++..++++++|+++|| +|||++++++.+++.++.++++++........+... -...-..++.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~----~~~~~a~~~~ 127 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNT----VPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSS----CCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhH----HHHHHhhhHH
Confidence 44567889999999999999999999999 899999999999999999998864310000000000 0000012678
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc--------ccchhH
Q 039312 140 VLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSFTVALVVVLTGVVYIQT--------NVSWVL 211 (579)
Q Consensus 140 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~i~~~~~~~l~~--------~~g~~~ 211 (579)
.++++|+++|+|.|+..+..+++++|..|+ +.|++..++.+.+..+|..+++.++..+.. ..+|+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 899999999999999999999999999994 446777777777888888888877655432 245777
Q ss_pred HHHHHHHHHHHHHH
Q 039312 212 GFAIPTACLAFSIT 225 (579)
Q Consensus 212 ~f~i~~~~~~~~~~ 225 (579)
.+.+..+..++.++
T Consensus 202 ~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 202 MFASECIPALLFLM 215 (491)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhh
Confidence 77766655444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=1.5e-21 Score=202.31 Aligned_cols=165 Identities=17% Similarity=0.172 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHHHHH
Q 039312 30 YILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLGMLM 109 (579)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~~~~ 109 (579)
.+.+..++..+........++. +.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||++++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHH
Confidence 3444555555555555555544 577899999999999999999999999999999999 89999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHHHHHH
Q 039312 110 MTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWWYFSF 189 (579)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 189 (579)
+.++. +.+.++++|++.|++.+...+...+++.|.+|+ ++|++.+++++...
T Consensus 82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER------TQLRHANSLLNMGI 133 (375)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SSCCSHHHHHHHHH
T ss_pred HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH------HHHHHHHHHHHHHH
Confidence 88877 677899999999999999999999999999984 33567788888899
Q ss_pred HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHH
Q 039312 190 TVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSI 224 (579)
Q Consensus 190 ~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 224 (579)
++|..++|.+++++.+..||++.|++.++..++..
T Consensus 134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999988899999988776555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.82 E-value=2.3e-20 Score=196.62 Aligned_cols=366 Identities=11% Similarity=-0.007 Sum_probs=200.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLL 105 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~ 105 (579)
|..+......++..+++..+..+++.|+++++|++..+.+++.+.+.++..++++++|+++|| +|||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH
Confidence 455656666666666667777899999998999999999999999999999999999999999 8999999988877655
Q ss_pred HHHHH---HHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 106 GMLMM---TLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 106 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
+...+ .+..... ..++.++++.+++.|...+...+...+..++ . .+.++..+
T Consensus 86 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~-~~~~~~~~ 140 (417)
T 2cfq_A 86 MFAPFFIFIFGPLLQ---------------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEK---V-SRRSNFEF 140 (417)
T ss_dssp CHHHHHHHTHHHHHH---------------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH---H-HHHHTCCH
T ss_pred HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---h-hhhcccch
Confidence 33222 1111000 0122334444444444333334444343321 1 12234456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccceeeecCCCCChhhHHHHHHHHHHHhccccc
Q 039312 183 NWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRCYIYIKPAGSVFSDMAKVVVAACRKRCFSV 262 (579)
Q Consensus 183 ~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (579)
+..+...++|.+++|.+++++.+ .+|+..|++.++..++.++..+...++. ++..++ +. .
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------------~~--~ 200 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV--------------AN--A 200 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS--------------SS--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc--------------cc--c
Confidence 66666678999999999998876 5899998876654333322222211110 000000 00 0
Q ss_pred CCCCCCcccCCccccccccCcccchhhhhhcccCCCcccccCCCCCCCccccchhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 039312 263 EPGCEHNYYDPPLMIKLKRTNRFKCLDRAALITEPSHELQEQGTPKNGWRLCSLQQVEQLKCLIAILPVCVSGIACFISM 342 (579)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 342 (579)
.+.. .+ ..+++... +...+ +...............+..+
T Consensus 201 ~~~~---------------~~------------------------~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2cfq_A 201 VGAN---------------HS------------------------AFSLKLAL-ELFRQ-PKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp SSSC---------------CC------------------------CCCHHHHH-HHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---------------cc------------------------cccHHHHH-HHhcC-CchhhHHHHHHHHHHHHHHH
Confidence 0000 00 00000000 00001 11111111111111112222
Q ss_pred hccchHHHHHhhhcCCCCCCccccChhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHH
Q 039312 343 DQQNTFGILQAIQMNKSVGPHFKMPPAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCML 422 (579)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l 422 (579)
.++...+.. ........+ ....+....++.+..++..++..++.|++.+| +.+..+.++.+++++
T Consensus 240 ~~~~~~~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 240 DQQFANFFT--SFFATGEQG--TRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHH--HTSSSHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHH
Confidence 222221111 111110000 00112334445555555566666664433322 455666666666654
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH-HHHHHHHHHHHHHH
Q 039312 423 VAGSVEKRRRELALKHDSFVSPMSLLTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA-FFLSLSVASYVSSL 501 (579)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~l~~~ 501 (579)
..++.. +.+.++...++.+++.....+..+.++.|..|++.||++.++ ++..+++|+.++|.
T Consensus 305 ~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 305 GSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHTTCC-----------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred HHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 443321 334444555556666666777788999999999999999998 58889999999999
Q ss_pred HHHHhhccc
Q 039312 502 VINIIHRVT 510 (579)
Q Consensus 502 l~~~v~~~~ 510 (579)
+.+.+.+..
T Consensus 368 l~G~l~~~~ 376 (417)
T 2cfq_A 368 LAGNMYESI 376 (417)
T ss_dssp HHHTHHHHS
T ss_pred hHHHHHHhc
Confidence 999877643
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=6.3e-12 Score=132.64 Aligned_cols=178 Identities=12% Similarity=0.043 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhccc--ChhHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYL--GRFRTLLVGSIAS 103 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~--Gr~~~l~~~~~~~ 103 (579)
+.++...+..++..+.++++..+++.|+++.+|++..+.+.+.+...++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 567777778888888889999999999998899999999999999999999999999999999 8 9999888776665
Q ss_pred H-HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhH
Q 039312 104 L-LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFF 182 (579)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (579)
. ++.+++.+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+ +.|++++
T Consensus 331 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~g~~~ 384 (451)
T 1pw4_A 331 VTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK------KAAGTAA 384 (451)
T ss_dssp HHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT------THHHHHH
T ss_pred HHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch------hhhhhHH
Confidence 5 4444333321 11455667777788998888888888999999984 4578889
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 183 NWWYFSFTV-ALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 183 ~~~~~~~~i-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
++++...++ |..++|.+.+++.+..||+..|++.++..+++.++.+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999998899999998877766665554443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=7.7e-11 Score=123.80 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHH-hHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVY-LQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
+.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++|| +|||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 456666677777777888888999999 888889999999999999999999999999999999 899999999988887
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+++.+.. +.. ..+..++.|++.+...|...++..|.+|++ ++.+.++
T Consensus 337 ~~~~~~~~~~----------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 386 (438)
T 3o7q_A 337 ALCLISAFAG----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_dssp HHHHHHHHCC----------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred HHHHHHHHcC----------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence 7777666543 232 233447788999999999999988988841 2333333
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVS-WVLGFAIPTACLAFSIT 225 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 225 (579)
.. ...+|.+++|.+.+++.+..| ++..|++.++..++.++
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33 456999999999999999888 99999887655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.19 E-value=1.7e-10 Score=120.99 Aligned_cols=174 Identities=7% Similarity=0.028 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCC---chhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHH
Q 039312 28 IKYILGNETFEKLASMSLISNITVYLQNNYNL---GGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASL 104 (579)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~---s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~ 104 (579)
.+...+..+.....++.....++.|+.+.++. +....+...+...++..++.+++|+++|| +|||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHH
Confidence 33333333333344444445677888766653 34455666676677788889999999999 899999988877776
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
++.+++.+.. +...+++...+.+++.+...+....+.+|.+|+ +.|++.++.
T Consensus 301 ~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~------~~~g~~~g~ 352 (417)
T 2cfq_A 301 VRIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV------RFSATIYLV 352 (417)
T ss_dssp HHHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH------HHHHHHHHH
T ss_pred HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHH
Confidence 6654443322 334455566666777666666677899999983 456777877
Q ss_pred -HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhc
Q 039312 185 -WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLG 230 (579)
Q Consensus 185 -~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 230 (579)
++.+.++|.+++|.++|++.+..|+...|.+.++..+++.++.+..
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 4667789999999999999888888888888777666665554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.00 E-value=1.6e-09 Score=115.80 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHH-----HHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLL-----VGSI 101 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~-----~~~~ 101 (579)
..+...+..++....++....+++.|..+.++.+..+.+.+.....++..++.++.|+++|| +|||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34445555566666677777888899998888887778888888888899999999999999 89986644 6666
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhh
Q 039312 102 ASLLGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESF 181 (579)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 181 (579)
+..++..++.+...... .....+...+.++.++.|++.+...+...+++.|.+|+ +.|+++
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------~~~g~~ 423 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK------AFNSQM 423 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT------TCSSSS
T ss_pred HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH------HHHHHH
Confidence 66666665555331100 00112445667777889999999999999999999995 345778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHhccce
Q 039312 182 FNWWYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPTACLAFSITLFLLGRRC 233 (579)
Q Consensus 182 ~~~~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 233 (579)
.++++...++|..+++.+.+++.+. ++...|++.++..+++.++.+...++
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999888764 66677777766666555555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=3.3e-08 Score=105.37 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHHHHHH
Q 039312 27 AIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIASLLG 106 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~~~~~ 106 (579)
.+........+..+..+....+..+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHH
Confidence 33444444444444433344445566677788888888888888888899999999999999 89999999988888877
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHH-HHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHHH
Q 039312 107 MLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLF-AALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNWW 185 (579)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (579)
...+....... ......+. ......+++ .+..|....+.+|.||+ +.|+++.++.
T Consensus 356 ~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt------~~R~~~~g~~ 411 (491)
T 4gc0_A 356 MFSLGTAFYTQ-----------------APGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPN------AIRGKALAIA 411 (491)
T ss_dssp HHHHHHHHHTT-----------------CCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCT------TTHHHHHHHH
T ss_pred HHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCH------hHHHHHHHHH
Confidence 76665543111 11222222 222222333 33456777899999995 5578888888
Q ss_pred HHHHHHHHHHHHHHHhhhcc------ccchhHHHHHHHHHHHHHHHHHHhcccee
Q 039312 186 YFSFTVALVVVLTGVVYIQT------NVSWVLGFAIPTACLAFSITLFLLGRRCY 234 (579)
Q Consensus 186 ~~~~~ig~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~ 234 (579)
+...++|+.+++.+.+.+.+ ..++...|++.++..+++.++.++..|+.
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 88888998888887766543 23455567776666666666555555654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.77 E-value=3.9e-09 Score=108.45 Aligned_cols=164 Identities=11% Similarity=-0.010 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhHHhcCCchhHHHHHHHHHHHHHHHhhhhhHHHhhcccChhHHHHHHHHH-HH
Q 039312 26 RAIKYILGNETFEKLASMSLISNITVYLQNNYNLGGVLLVNIVTIWSGSNNITSLLGAFVSDAYLGRFRTLLVGSIA-SL 104 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laDr~~Gr~~~l~~~~~~-~~ 104 (579)
|.++...+..++.....+++..+++.|+++.+|++..+.+.+.+...++..++.++.|+++|| +||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHH
Confidence 456666777777788888888899999998899999999999999999999999999999999 7872 2333322 22
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCccchhhhhhhcCCCCChhhhhhhhhhHHH
Q 039312 105 LGMLMMTLTAGIHQLRPSSCGDPPHCPQPQGWQFCVLFAALTLLSIGAGGIRPCNIAFGADQFDTTTEKGRAQLESFFNW 184 (579)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (579)
.+.......... ..+.+.+++..++.|++.+...+...++..|.+| +.|++..+.
T Consensus 276 ~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-------~~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWFG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-------FLAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-------HHHHHHHHH
T ss_pred HHHHHHHHhhhc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-------cccchHHHH
Confidence 222211111100 0144556677788899999999999999999876 346788999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Q 039312 185 WYFSFTVALVVVLTGVVYIQTNVSWVLGFAIPT 217 (579)
Q Consensus 185 ~~~~~~ig~~i~~~~~~~l~~~~g~~~~f~i~~ 217 (579)
.+...++|..++|.+.+.+.+..+|...+++.+
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 888999999999999999887777887776644
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.90 E-value=0.00014 Score=77.79 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=86.2
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccch
Q 039312 368 PAWMNITSMLALSLWILIYERLYIPVATKIAGKVKRLTLQQRIKTGIVMSILCMLVAGSVEKRRRELALKHDSFVSPMSL 447 (579)
Q Consensus 368 ~~~~~~i~~~~~ii~~~l~~~~~~~~~~k~~~~~~~~~~~~~i~~G~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (579)
.+.+.....++.++..++.+++.|++ . .+.+.+..+.++.+++.+...+.. .+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~----~------g~r~~~~~~~~~~~~~~~~~~~~~----------------~~~ 109 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRF----F------GKYNTILWLSLIYCVGHAFLAIFE----------------HSV 109 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTS----S------CSHHHHHHHHHHHHHHHHHHHHTS----------------SCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----h------cchHHHHHHHHHHHHHHHHHHHhc----------------ccH
Confidence 44556666777777778777775443 0 223667777777777766655431 145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccChhhHHHHHHH---HHHHHHHHHHHHHHHHHHhhcc
Q 039312 448 LTLLPQYALSGLTEAFAAVAIMEFFTNQMPESMRTVAGAA---FFLSLSVASYVSSLVINIIHRV 509 (579)
Q Consensus 448 ~~li~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~gi---~~~~~~ig~~l~~~l~~~v~~~ 509 (579)
+.+++..++.+++.....|....++.+.+|++.|+...++ .....++|..+++.+.+.+.+.
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677778899999999999999999999999999877666 8888889999999888776653
Done!