BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039313
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K2F|A Chain A, Siah, Seven In Absentia Homolog
pdb|1K2F|B Chain B, Siah, Seven In Absentia Homolog
Length = 190
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 113 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 172
Query: 84 LFFS 87
F+
Sbjct: 173 QLFA 176
>pdb|2AN6|A Chain A, Protein-Peptide Complex
pdb|2AN6|B Chain B, Protein-Peptide Complex
pdb|2AN6|C Chain C, Protein-Peptide Complex
pdb|2AN6|D Chain D, Protein-Peptide Complex
Length = 191
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 114 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 173
Query: 84 LFFS 87
F+
Sbjct: 174 QLFA 177
>pdb|2A25|A Chain A, Crystal Structure Of Siah1 Sbd Bound To The Peptide
Ekpaavvapittg From Sip
Length = 193
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 116 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 175
Query: 84 LFFS 87
F+
Sbjct: 176 QLFA 179
>pdb|3AP3|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|C Chain C, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|D Chain D, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
Length = 355
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 57 GIPRS-------IRDSHKKVRDSQDGLIIQRNLAL--FFSGGDRQELKLKVAG 100
G+PRS + D+H +VR ++ II R LA+ +S R++L+L AG
Sbjct: 53 GVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWSKSGREKLRLDEAG 105
>pdb|3AP1|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP1|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP2|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
pdb|3AP2|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
Length = 337
Score = 28.9 bits (63), Expect = 0.79, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 57 GIPRS-------IRDSHKKVRDSQDGLIIQRNLAL--FFSGGDRQELKLKVAG 100
G+PRS + D+H +VR ++ II R LA+ +S R++L+L AG
Sbjct: 53 GVPRSGTTLMRAMLDAHPEVRCGEETRIIPRVLAMRQAWSKSGREKLRLDEAG 105
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 28 LRFMGDEEEARQFSY--SLEVGGNG-----RKLTWQGIPRSIR 63
L F G E EA + L G N R+L+W GIP+ +R
Sbjct: 14 LYFQGSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVR 56
>pdb|2AZ4|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Enterococcus Faecalis V583
pdb|2AZ4|B Chain B, Crystal Structure Of A Protein Of Unknown Function From
Enterococcus Faecalis V583
Length = 429
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 34 EEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
EE+ Q LE+ R++T+ G P ++ K + S ++++ N+A
Sbjct: 237 EEDLVQHLVRLELENPNRQITFNGYPANVERFAKIIEKSPRTVVLEANMA 286
>pdb|1LJ8|A Chain A, Crystal Structure Of Mannitol Dehydrogenase In Complex
With Nad
pdb|1M2W|A Chain A, Pseudomonas Fluorescens Mannitol 2-Dehydrogenase Ternary
Complex With Nad And D-Mannitol
pdb|1M2W|B Chain B, Pseudomonas Fluorescens Mannitol 2-Dehydrogenase Ternary
Complex With Nad And D-Mannitol
Length = 493
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 31 MGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLALFFSGGD 90
+G A Q Y+ + G L W +R +K RD G Q L + GD
Sbjct: 34 VGGFHRAHQAYYTDALXNTGEGLDWSICGVGLRSEDRKARDDLAG---QDYLFTLYELGD 90
Query: 91 RQELKLKVAG 100
+ +++V G
Sbjct: 91 TDDTEVRVIG 100
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
Length = 350
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 35 EEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKV 69
+ +QF E+ NG LTW+ + ++ +D++ KV
Sbjct: 45 QNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKV 79
>pdb|1WEH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
pdb|1WEH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1887 From Thermus Thermophilus Hb8
Length = 171
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 9 FCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSL 44
+ L H +AP V LR + DEE+ R+F SL
Sbjct: 136 YWLGLLKAHGEIAPEDVGLLRVVADEEDLRRFLRSL 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,923,137
Number of Sequences: 62578
Number of extensions: 106880
Number of successful extensions: 267
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 10
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)