BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039313
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana
GN=SINAT2 PE=2 SV=1
Length = 308
Score = 195 bits (496), Expect = 6e-50, Method: Composition-based stats.
Identities = 86/100 (86%), Positives = 93/100 (93%)
Query: 1 VFNCFARHFCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 60
VFNCF R FCLHFEAF LGMAPVY+AFLRFMGDE EA++FSYSLEVG +GRKLTWQGIPR
Sbjct: 203 VFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRKLTWQGIPR 262
Query: 61 SIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKVAG 100
SIRDSH+KVRDSQDGLII RNLAL+FSGGDRQELKL+V G
Sbjct: 263 SIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTG 302
>sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana
GN=SINAT4 PE=2 SV=1
Length = 327
Score = 187 bits (476), Expect = 1e-47, Method: Composition-based stats.
Identities = 81/100 (81%), Positives = 93/100 (93%)
Query: 1 VFNCFARHFCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 60
VF+CF ++FCLHFEAF LGM PVY+AFLRFMGDEE+AR +SYSLEVGG+GRKLTW+G PR
Sbjct: 207 VFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRKLTWEGTPR 266
Query: 61 SIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKVAG 100
SIRDSH+KVRDS DGLIIQRN+ALFFSGGDR+ELKL+V G
Sbjct: 267 SIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTG 306
>sp|P93748|SINA1_ARATH Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana
GN=SINAT1 PE=3 SV=1
Length = 305
Score = 186 bits (473), Expect = 3e-47, Method: Composition-based stats.
Identities = 82/100 (82%), Positives = 91/100 (91%)
Query: 1 VFNCFARHFCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 60
VFNCF R FCLHFEAF LGMAPVY+AFLRFMGDE EA++FSYSLEVG + RKLTWQGIPR
Sbjct: 200 VFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRKLTWQGIPR 259
Query: 61 SIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKVAG 100
SIRDSH+KVRDSQDGLII RNLAL+FSG D++ELKL+V G
Sbjct: 260 SIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTG 299
>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana
GN=SINAT3 PE=2 SV=1
Length = 326
Score = 183 bits (464), Expect = 3e-46, Method: Composition-based stats.
Identities = 79/100 (79%), Positives = 91/100 (91%)
Query: 1 VFNCFARHFCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 60
VF+CF ++FCLHFEAF LGMAPVY+AFLRFMGDE EAR ++YSLEVGG GRKL W+G PR
Sbjct: 206 VFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRKLIWEGTPR 265
Query: 61 SIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKVAG 100
S+RDSH+KVRDS DGLIIQRN+ALFFSGGDR+ELKL+V G
Sbjct: 266 SVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTG 305
>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana
GN=SINAT5 PE=1 SV=2
Length = 309
Score = 182 bits (461), Expect = 7e-46, Method: Composition-based stats.
Identities = 77/100 (77%), Positives = 92/100 (92%)
Query: 1 VFNCFARHFCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 60
VF CF ++FCLHFEAF LGMAPVY+AFLRFMGDE++AR ++YSLEVGG+GRK TW+G PR
Sbjct: 189 VFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPR 248
Query: 61 SIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKVAG 100
S+RDSH+KVRDS DGLIIQRN+ALFFSGGD++ELKL+V G
Sbjct: 249 SVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTG 288
>sp|Q86MW9|SINA_SCHMA E3 ubiquitin-protein ligase sina OS=Schistosoma mansoni GN=SINA
PE=1 SV=1
Length = 371
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 3 NCFARHFCLHFEAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSI 62
+CF F L E ++ A ++ +G ++A QF Y LE+ G+ R+LTW+ PRSI
Sbjct: 268 SCFGHSFMLVLEKQERVPDQIFFALVQLIGTRKQADQFVYRLELNGHRRRLTWEACPRSI 327
Query: 63 RDSHKKVRDSQDGLIIQRNLALFFS 87
D + D L+ N A F+
Sbjct: 328 HDGVQSAIAVSDCLVFDSNTAHSFA 352
>sp|Q8I147|SINA_DROWI E3 ubiquitin-protein ligase sina OS=Drosophila willistoni GN=sina
PE=3 SV=1
Length = 331
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFH-LGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A ++ +G +EA F Y LE+ GN R+LTW+ +PRS
Sbjct: 232 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 291
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I + + D L+ ++A F+
Sbjct: 292 IHEGVASAIHNSDCLVFDTSIAQLFA 317
>sp|P29304|SINA_DROVI E3 ubiquitin-protein ligase sina OS=Drosophila virilis GN=sina PE=3
SV=1
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFH-LGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A ++ +G +EA F Y LE+ GN R+LTW+ +PRS
Sbjct: 215 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 274
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I + + D L+ ++A F+
Sbjct: 275 IHEGVASAIHNSDCLVFDTSIAQLFA 300
>sp|P21461|SINA_DROME E3 ubiquitin-protein ligase sina OS=Drosophila melanogaster GN=sina
PE=1 SV=2
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFH-LGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A ++ +G +EA F Y LE+ GN R+LTW+ +PRS
Sbjct: 215 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 274
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I + + D L+ ++A F+
Sbjct: 275 IHEGVASAIHNSDCLVFDTSIAQLFA 300
>sp|P61093|SINA_DROER E3 ubiquitin-protein ligase sina OS=Drosophila erecta GN=sina PE=3
SV=1
Length = 314
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFH-LGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A ++ +G +EA F Y LE+ GN R+LTW+ +PRS
Sbjct: 215 SCFGHHFMLVLEKQEKYDGHQQFFAIVQLIGSRKEAENFVYRLELNGNRRRLTWEAMPRS 274
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I + + D L+ ++A F+
Sbjct: 275 IHEGVASAIHNSDCLVFDTSIAQLFA 300
>sp|Q7SYL3|SIAH2_DANRE E3 ubiquitin-protein ligase Siah2 OS=Danio rerio GN=siah2l PE=2
SV=2
Length = 331
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFHLGMA-PVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A + +G ++A F+Y LE+ GN R+LTW+ PRS
Sbjct: 232 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 291
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I D + D L+ ++A F+
Sbjct: 292 IHDGVAAAIMNSDCLVFDTSIAHLFA 317
>sp|Q8R4T2|SIAH2_RAT E3 ubiquitin-protein ligase SIAH2 OS=Rattus norvegicus GN=Siah2
PE=1 SV=2
Length = 325
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFHLGMA-PVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A + +G ++A F+Y LE+ GN R+LTW+ PRS
Sbjct: 224 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 283
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I D + D L+ +A F+
Sbjct: 284 IHDGVAAAIMNSDCLVFDTAIAHLFA 309
>sp|Q06986|SIAH2_MOUSE E3 ubiquitin-protein ligase SIAH2 OS=Mus musculus GN=Siah2 PE=1
SV=2
Length = 325
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFHLGMA-PVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A + +G ++A F+Y LE+ GN R+LTW+ PRS
Sbjct: 224 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 283
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I D + D L+ +A F+
Sbjct: 284 IHDGVAAAIMNSDCLVFDTAIAHLFA 309
>sp|O43255|SIAH2_HUMAN E3 ubiquitin-protein ligase SIAH2 OS=Homo sapiens GN=SIAH2 PE=1
SV=1
Length = 324
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 3 NCFARHFCLHFEAFHLGMA-PVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRS 61
+CF HF L E + A + +G ++A F+Y LE+ GN R+LTW+ PRS
Sbjct: 223 SCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRS 282
Query: 62 IRDSHKKVRDSQDGLIIQRNLALFFS 87
I D + D L+ +A F+
Sbjct: 283 IHDGVAAAIMNSDCLVFDTAIAHLFA 308
>sp|Q8T3Y0|SINAL_DROME Probable E3 ubiquitin-protein ligase sinah OS=Drosophila
melanogaster GN=sinah PE=1 SV=2
Length = 351
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 1 VFNCFARHFCLHFEAFHLGM-APVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIP 59
V +C RHF L E +LG Y R +G ++A +F Y++ + R L WQ P
Sbjct: 246 VQSCHGRHFLLSLEKINLGEDCQQYFTACRMIGSMKDAAEFVYNISLEAYNRTLRWQSKP 305
Query: 60 RSIRDSHKKVRDSQDGLIIQRNLALFFS 87
RSIR++ ++ D L++ ++ FS
Sbjct: 306 RSIRENFSSFTNA-DFLVLNKHTVELFS 332
>sp|Q9I8X5|SIAH2_XENLA E3 ubiquitin-protein ligase siah2 OS=Xenopus laevis GN=siah2 PE=2
SV=1
Length = 313
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 CFARHFCLHFEAFHLGMA-PVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSI 62
CF HF L E + A + +G ++A ++Y LE+ GN R+LTW+ PRSI
Sbjct: 213 CFNHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENYAYRLELNGNRRRLTWEATPRSI 272
Query: 63 RDSHKKVRDSQDGLIIQRNLALFFS 87
D + D L+ +A F+
Sbjct: 273 HDGVAAAIMNSDCLVFDTAIAHLFA 297
>sp|Q8IW03|SIAH3_HUMAN Seven in absentia homolog 3 OS=Homo sapiens GN=SIAH3 PE=2 SV=3
Length = 269
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 3 NCFARHFCLHF--EAFHLGMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPR 60
+C HF L + H G P + A + +G +A F+Y LE+ N R+L W+ PR
Sbjct: 161 SCLGHHFLLVLRKQERHEG-HPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPR 219
Query: 61 SIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKVA 99
S+ + V D L++ +LA FS D L + +A
Sbjct: 220 SVLECVDSVITDGDCLVLNTSLAQLFS--DNGSLAIGIA 256
>sp|Q920M9|SIAH1_RAT E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1
PE=1 SV=2
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264
Query: 84 LFFS 87
F+
Sbjct: 265 QLFA 268
>sp|Q06985|SIA1B_MOUSE E3 ubiquitin-protein ligase SIAH1B OS=Mus musculus GN=Siah1b PE=2
SV=2
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264
Query: 84 LFFS 87
F+
Sbjct: 265 QLFA 268
>sp|P61092|SIA1A_MOUSE E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1
SV=1
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264
Query: 84 LFFS 87
F+
Sbjct: 265 QLFA 268
>sp|Q7ZVG6|SIAH1_DANRE E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264
Query: 84 LFFS 87
F+
Sbjct: 265 QLFA 268
>sp|Q8IUQ4|SIAH1_HUMAN E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1
SV=2
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNLA 83
+ A ++ +G ++A F+Y LE+ G+ R+LTW+ PRSI + + D L+ ++A
Sbjct: 205 FFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIA 264
Query: 84 LFFS 87
F+
Sbjct: 265 QLFA 268
>sp|A8X679|SIAH1_CAEBR E3 ubiquitin-protein ligase siah-1 OS=Caenorhabditis briggsae
GN=siah-1 PE=3 SV=2
Length = 434
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 23 VYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNL 82
++ A ++ +G ++EA F Y LE+ N R+++W+ PRSI + D L +
Sbjct: 337 MFYAVVQLIGSKKEADNFVYRLELSANRRRMSWEATPRSIHEGVAFAIQQSDCLAFDTSA 396
Query: 83 ALFFS 87
A F+
Sbjct: 397 AQLFA 401
>sp|Q965X6|SIAH1_CAEEL E3 ubiquitin-protein ligase siah-1 OS=Caenorhabditis elegans
GN=siah-1 PE=1 SV=3
Length = 419
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 23 VYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRNL 82
++ A ++ +G ++EA F Y LE+ + R+++W+ PRSI + D L N
Sbjct: 322 MFYAVVQLIGSKKEADNFVYRLELSASRRRMSWEATPRSIHEGVVVAIQQSDCLAFDSNA 381
Query: 83 ALFFS 87
A F+
Sbjct: 382 AQLFA 386
>sp|Q2VZP8|MTNA_MAGSA Methylthioribose-1-phosphate isomerase OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=mtnA PE=3
SV=1
Length = 362
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 19 GMAPVYVAF-----LRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQ 73
+AP+Y AF L DE R SL R+L W G+P H + D+
Sbjct: 175 ALAPIYKAFDAGIPLHVWVDETRPRNQGASL----TARELNWHGVP------HTVIADNT 224
Query: 74 DGLIIQRNLA-LFFSGGDR 91
G ++Q + L G DR
Sbjct: 225 GGHLMQHGMVDLCIVGTDR 243
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 49 NGRKLTWQGIP-----------RSIRDSHKKVRDSQDGLIIQRNLALFFS 87
NG+K+ WQGI +++R+ + K+ DS+ +++ AL S
Sbjct: 717 NGKKMAWQGIALLPFIDETRLLKTVREQYSKLSDSEKARNVRKKDALLIS 766
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,015,551
Number of Sequences: 539616
Number of extensions: 1355316
Number of successful extensions: 3377
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3351
Number of HSP's gapped (non-prelim): 29
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)