Query 039313
Match_columns 100
No_of_seqs 78 out of 80
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:14:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a25_A Ubiquitin ligase SIAH1; 100.0 7.1E-34 2.4E-38 210.4 8.8 99 1-99 92-191 (193)
2 3oky_B Putative uncharacterize 51.4 6.1 0.00021 33.5 1.8 41 37-77 57-104 (565)
3 3jxp_A Coenzyme PQQ synthesis 35.2 39 0.0013 25.5 3.9 45 37-81 180-224 (321)
4 2ope_A PILX; type IV pilin, mi 21.9 81 0.0028 22.4 3.3 30 32-61 51-82 (128)
5 3ugf_A Sucrose:(sucrose/fructa 21.1 69 0.0024 26.8 3.2 23 76-98 482-504 (546)
6 3q4f_C DNA repair protein XRCC 18.3 37 0.0013 25.5 0.9 27 30-58 103-129 (186)
7 3d2w_A TAR DNA-binding protein 16.7 78 0.0027 18.9 2.0 35 24-60 49-84 (89)
8 3mx7_A FAS apoptotic inhibitor 15.5 65 0.0022 21.4 1.5 11 39-49 74-84 (90)
9 2e5i_A Heterogeneous nuclear r 15.5 39 0.0013 22.5 0.4 39 23-62 62-104 (124)
10 2w7q_A Outer-membrane lipoprot 15.2 2E+02 0.0068 19.5 4.0 35 31-67 114-149 (204)
No 1
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=100.00 E-value=7.1e-34 Score=210.40 Aligned_cols=99 Identities=26% Similarity=0.558 Sum_probs=91.4
Q ss_pred CeeecCceeEEEEeeeec-CCccEEEEEEEeeCCHHhHcCceEEEEEcCCCeEEEEeecccchhhhhhhhhcCCCeeEEe
Q 039313 1 VFNCFARHFCLHFEAFHL-GMAPVYVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQ 79 (100)
Q Consensus 1 v~sCfg~hF~l~lek~~~-~~~~~f~A~vqliG~~~eA~nF~Y~LEl~g~~RrLtWEa~PRSI~e~~~~a~~~~DcLv~~ 79 (100)
+++|||+||+|++|+++. .++++|+++|++||++++|+||+|+||+.+++|||+||++||||+|++++++++.|||+|+
T Consensus 92 v~~~~g~~Fll~~~~~~~~~g~~~~~~~V~~ig~~~ea~~f~Y~l~~~~~~r~L~~~~~~~s~~e~~~~~~~~~d~L~ip 171 (193)
T 2a25_A 92 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFD 171 (193)
T ss_dssp EEEETTEEEEEEEEEC------CEEEEEEEESSCHHHHTTEEEEEEEEETTEEEEEEECCEETTTCSHHHHHTTCSEEEE
T ss_pred EEEecCceEEEEEEEeccCCCCcEEEEEEEEeCCcchhcceEEEEEEEcCCCEEEEEEEEEehhhcccccccCCCEEEEc
Confidence 479999999999999998 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecCCeeeEEEEEc
Q 039313 80 RNLALFFSGGDRQELKLKVA 99 (100)
Q Consensus 80 ~~~A~~Fa~~~~~~i~l~it 99 (100)
.++|++|++||++.|+++|+
T Consensus 172 ~~~~~~f~~~~~L~l~v~I~ 191 (193)
T 2a25_A 172 TSIAQLFAENGNLGINVTIS 191 (193)
T ss_dssp HHHHHHHCSSSEEEEEEEEE
T ss_pred HHHHHhhcCCCeEEEEEEEE
Confidence 99999999999999999885
No 2
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=51.41 E-value=6.1 Score=33.52 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=33.7
Q ss_pred HcCceEEEEEcC-------CCeEEEEeecccchhhhhhhhhcCCCeeE
Q 039313 37 ARQFSYSLEVGG-------NGRKLTWQGIPRSIRDSHKKVRDSQDGLI 77 (100)
Q Consensus 37 A~nF~Y~LEl~g-------~~RrLtWEa~PRSI~e~~~~a~~~~DcLv 77 (100)
|++.-|+|.+.. ..++++|++.|.-+.++..+--+.-||--
T Consensus 57 ard~l~~l~l~~~~~~~~~~~~~i~W~~~~~~~~~C~~kGK~~~eC~N 104 (565)
T 3oky_B 57 ARDHIYTVDIDTSHTEEIYCSKKLTWKSRQADVDTCRMKGKHKDECHN 104 (565)
T ss_dssp CBSEEEEEEGGGCCSSEECCCEEEECCCCHHHHHHHHHTTCCTTTSSC
T ss_pred cCCeEEEEECCccccccccccceEEEeCCHHHhhhhhhcCCChHHcCc
Confidence 789999999963 14789999999999999988766667743
No 3
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=35.21 E-value=39 Score=25.51 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=32.7
Q ss_pred HcCceEEEEEcCCCeEEEEeecccchhhhhhhhhcCCCeeEEecc
Q 039313 37 ARQFSYSLEVGGNGRKLTWQGIPRSIRDSHKKVRDSQDGLIIQRN 81 (100)
Q Consensus 37 A~nF~Y~LEl~g~~RrLtWEa~PRSI~e~~~~a~~~~DcLv~~~~ 81 (100)
...+.|+++-..+++++.+-+=-..+-+.+...+.++|.||++..
T Consensus 180 ~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~~~~~~~~~~D~li~eat 224 (321)
T 3jxp_A 180 GDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGT 224 (321)
T ss_dssp TSEEEEEEEETTTCCEEEEESSCCCCCHHHHHHHHHCSEEEEECC
T ss_pred CCcEEEEEEecCCCcEEEEECCCCCCCHHHHHHhcCCCEEEEeCC
Confidence 578999998656678887765434444555556678999999974
No 4
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=21.94 E-value=81 Score=22.39 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=26.1
Q ss_pred CCHHhHcCceEEEEEcC--CCeEEEEeecccc
Q 039313 32 GDEEEARQFSYSLEVGG--NGRKLTWQGIPRS 61 (100)
Q Consensus 32 G~~~eA~nF~Y~LEl~g--~~RrLtWEa~PRS 61 (100)
.+++-|+.|+|+-|+.. +.|....+|+|+.
T Consensus 51 ~~~~ia~KYtfS~~~vn~~~~ray~L~a~Pka 82 (128)
T 2ope_A 51 MNPKIAEKYNVSVHFVNKEKPRAYSLVGVPKT 82 (128)
T ss_dssp CCHHHHTTEEEEEEESCTTCTTSEEEEEEECT
T ss_pred cChhhhhceeeeEEeecCCCceEEEEEEeccC
Confidence 47889999999999976 6799999999964
No 5
>3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A*
Probab=21.05 E-value=69 Score=26.83 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEecceeeeeecCCeeeEEEEE
Q 039313 76 LIIQRNLALFFSGGDRQELKLKV 98 (100)
Q Consensus 76 Lv~~~~~A~~Fa~~~~~~i~l~i 98 (100)
+.+|+++...|+.||+.-|.-||
T Consensus 482 ilvD~SiVE~F~~~Gr~~iTsrv 504 (546)
T 3ugf_A 482 LLVDHSIVESFAQGGRSCITSRV 504 (546)
T ss_dssp EEEETTEEEEEETTTTEEEEEEC
T ss_pred EEEecceeeeeccCCeEEEEEEe
Confidence 68899999999999988887665
No 6
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=18.33 E-value=37 Score=25.52 Aligned_cols=27 Identities=4% Similarity=0.206 Sum_probs=20.2
Q ss_pred eeCCHHhHcCceEEEEEcCCCeEEEEeec
Q 039313 30 FMGDEEEARQFSYSLEVGGNGRKLTWQGI 58 (100)
Q Consensus 30 liG~~~eA~nF~Y~LEl~g~~RrLtWEa~ 58 (100)
|++....|.+|+|++. .+.+.++||-.
T Consensus 103 Lv~~~~~~~~y~F~~S--~e~~~Fs~eK~ 129 (186)
T 3q4f_C 103 LLSGAGPADVYTFNFS--KESCYFFFEKN 129 (186)
T ss_dssp HSSCCCSSCCEEEEEC--TTTCEEEEEEE
T ss_pred HhcCCCCCcceEEEec--cceeEEEEEEE
Confidence 4566677788888886 55888888864
No 7
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=16.74 E-value=78 Score=18.93 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEEEEEeeCCHHhHcCceEEEEEcCCCeEEEEe-eccc
Q 039313 24 YVAFLRFMGDEEEARQFSYSLEVGGNGRKLTWQ-GIPR 60 (100)
Q Consensus 24 f~A~vqliG~~~eA~nF~Y~LEl~g~~RrLtWE-a~PR 60 (100)
=||||.+- +..+|+...= .++.+.+|++.+. +.||
T Consensus 49 GfaFV~F~-~~~~A~~~~~-~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 49 AFAFVTFA-DDKVAQSLCG-EDLIIKGISVHISNAEPK 84 (89)
T ss_dssp SEEEEEES-CHHHHHHHTT-CEEEETTEEEEEEECC--
T ss_pred CEEEEEEC-CHHHHHHHcC-CCcccCCEEEEEEEcCCC
Confidence 38999884 5666663211 1444456666554 3443
No 8
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=15.50 E-value=65 Score=21.38 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=9.3
Q ss_pred CceEEEEEcCC
Q 039313 39 QFSYSLEVGGN 49 (100)
Q Consensus 39 nF~Y~LEl~g~ 49 (100)
.|.|+|+++|.
T Consensus 74 ~y~YtL~VngK 84 (90)
T 3mx7_A 74 AYEYTLEINGK 84 (90)
T ss_dssp EEEEEEEETTE
T ss_pred cEEEEEEECCE
Confidence 48999999985
No 9
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=15.49 E-value=39 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=23.0
Q ss_pred EEEEEEEeeCCHHhHcCceEEE---EEcCCCeEEEEe-ecccch
Q 039313 23 VYVAFLRFMGDEEEARQFSYSL---EVGGNGRKLTWQ-GIPRSI 62 (100)
Q Consensus 23 ~f~A~vqliG~~~eA~nF~Y~L---El~g~~RrLtWE-a~PRSI 62 (100)
-|+|||++ .+..+|++=.-.| ++.|..|+|.++ |.|+++
T Consensus 62 Gf~aFVef-~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 62 GIQAMVEF-ESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SEEEEEEE-SSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCEEEEEE-CCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 37899997 4555554322211 334444778876 778775
No 10
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=15.25 E-value=2e+02 Score=19.50 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=19.8
Q ss_pred eCCHHh-HcCceEEEEEcCCCeEEEEeecccchhhhhh
Q 039313 31 MGDEEE-ARQFSYSLEVGGNGRKLTWQGIPRSIRDSHK 67 (100)
Q Consensus 31 iG~~~e-A~nF~Y~LEl~g~~RrLtWEa~PRSI~e~~~ 67 (100)
.|..+. .++|.... .+.+...+|.-+|++-...+.
T Consensus 114 ~~~~~~l~~~f~v~~--~~~~~~~~~~L~Pk~~~~~~~ 149 (204)
T 2w7q_A 114 SGDISKISESFAITY--KEGGNVVDFVLKPKTKDTLFD 149 (204)
T ss_dssp GSCHHHHTTTEEEEE--EEETTEEEEEEEESSSCSSCS
T ss_pred cCCchHhhcceEEEe--cCCCCeeEEEEEECCCCCCEE
Confidence 455333 34555544 444555788889987544333
Done!