BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039315
(77 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553647|ref|XP_002517864.1| 20 kD nuclear cap binding protein, putative [Ricinus communis]
gi|223542846|gb|EEF44382.1| 20 kD nuclear cap binding protein, putative [Ricinus communis]
Length = 255
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 53/60 (88%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKR R+DDR A E S+R++D ESRRN+D DSRPEKNPRFRESG+SD++E+DDRK+RS
Sbjct: 196 DYHRKRFRDDDRQAREPSRRTSDHESRRNNDPDSRPEKNPRFRESGNSDEEEEDDRKRRS 255
>gi|224133438|ref|XP_002328042.1| predicted protein [Populus trichocarpa]
gi|222837451|gb|EEE75830.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 54/66 (81%), Gaps = 1/66 (1%)
Query: 13 MAEKTDYQ-RKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDD 71
+ + DY RKRHREDDR E+SKR++D ESRRN D DSRPEKNPRFRES +SDD+E+D
Sbjct: 198 LRQSGDYHHRKRHREDDRPPRESSKRTSDHESRRNFDPDSRPEKNPRFRESANSDDEEED 257
Query: 72 DRKQRS 77
D++QR+
Sbjct: 258 DKQQRT 263
>gi|224092924|ref|XP_002309756.1| predicted protein [Populus trichocarpa]
gi|118488601|gb|ABK96113.1| unknown [Populus trichocarpa]
gi|222852659|gb|EEE90206.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 20 QRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQR 76
QRKR+REDD+ E+SKR++D ESRRN D DSRPEKNPRFRES +SDD+E+DDR+QR
Sbjct: 198 QRKRNREDDQQPRESSKRTSDHESRRNFDPDSRPEKNPRFRESTNSDDEEEDDRQQR 254
>gi|356549892|ref|XP_003543324.1| PREDICTED: nuclear cap-binding protein subunit 2-like [Glycine max]
Length = 258
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 57/60 (95%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKRHR+D+RH HE+SKR++D ESRRN+DH+SRPEKNPRFRESGDSD+DE+DDRK+R+
Sbjct: 199 DYYRKRHRDDERHTHESSKRTSDHESRRNTDHESRPEKNPRFRESGDSDEDEEDDRKRRA 258
>gi|449438721|ref|XP_004137136.1| PREDICTED: nuclear cap-binding protein subunit 2-like [Cucumis
sativus]
gi|449476391|ref|XP_004154724.1| PREDICTED: nuclear cap-binding protein subunit 2-like [Cucumis
sativus]
Length = 251
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 56/56 (100%)
Query: 21 RKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQR 76
RKR+R+DDRHAHE+SKR++D+ESRRNS+++SRPEKNPRFRESGDSD+++DDDRKQR
Sbjct: 195 RKRYRDDDRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQR 250
>gi|225446445|ref|XP_002276868.1| PREDICTED: nuclear cap-binding protein subunit 2-like isoform 1
[Vitis vinifera]
gi|359485224|ref|XP_003633238.1| PREDICTED: nuclear cap-binding protein subunit 2-like isoform 2
[Vitis vinifera]
gi|359485226|ref|XP_003633239.1| PREDICTED: nuclear cap-binding protein subunit 2-like isoform 3
[Vitis vinifera]
Length = 253
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQR 76
DY RKRHR+DDRH+H+ SKR++D +SRRNSDHDSRPEKNPRFRESGDSDD+E+DDRK+R
Sbjct: 194 DYPRKRHRDDDRHSHDFSKRTSDHDSRRNSDHDSRPEKNPRFRESGDSDDEEEDDRKRR 252
>gi|388501070|gb|AFK38601.1| unknown [Lotus japonicus]
Length = 253
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/60 (78%), Positives = 56/60 (93%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKRHR+DD H +E+SKR++D ESRRNSDH+SRPEKNPRFRESGDSDD+E+DDRK+RS
Sbjct: 194 DYHRKRHRDDDHHTNESSKRTSDHESRRNSDHESRPEKNPRFRESGDSDDEEEDDRKRRS 253
>gi|302143336|emb|CBI21897.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQR 76
DY RKRHR+DDRH+H+ SKR++D +SRRNSDHDSRPEKNPRFRESGDSDD+E+DDRK+R
Sbjct: 73 DYPRKRHRDDDRHSHDFSKRTSDHDSRRNSDHDSRPEKNPRFRESGDSDDEEEDDRKRR 131
>gi|219944397|gb|ACL54980.1| nuclear cap-binding protein CBP20 [Solanum tuberosum]
gi|219944399|gb|ACL54981.1| nuclear cap-binding protein CBP20 [Solanum tuberosum]
gi|224460063|gb|ACN43582.1| nuclear cap-binding protein [Solanum tuberosum]
gi|262065509|gb|ACY07775.1| CBP20 protein [Solanum tuberosum]
Length = 255
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 53/60 (88%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DYQRKRHREDD H + KR+ D ESRRNSDH+SRPEKNPRFRESGDSD+++DDDRK+R+
Sbjct: 196 DYQRKRHREDDHHRPDYPKRTYDRESRRNSDHESRPEKNPRFRESGDSDEEDDDDRKRRT 255
>gi|224460055|gb|ACN43578.1| nuclear cap-binding protein [Nicotiana tabacum]
gi|261866539|gb|ACY02034.1| cap binding protein 20 [Nicotiana tabacum]
Length = 254
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 51/60 (85%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKRHREDD H + KRS D ESRR SDH+SRPEKNPRFRESGDSD+++DDDRK+R+
Sbjct: 195 DYHRKRHREDDHHRSDYPKRSYDRESRRTSDHESRPEKNPRFRESGDSDEEDDDDRKRRT 254
>gi|224460059|gb|ACN43580.1| nuclear cap-binding protein [Solanum tuberosum]
Length = 255
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 52/60 (86%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
+Y RKRHREDD H + KR+ D ESRRNSDH+SRPEKNPRFRESGDSD+++DDDRK+R+
Sbjct: 196 EYHRKRHREDDHHRPDYPKRTYDRESRRNSDHESRPEKNPRFRESGDSDEEDDDDRKRRT 255
>gi|219944401|gb|ACL54982.1| nuclear cap-binding protein CBP20 [Solanum tuberosum]
gi|219944403|gb|ACL54983.1| nuclear cap-binding protein CBP20 [Solanum tuberosum]
gi|224460057|gb|ACN43579.1| nuclear cap-binding protein [Solanum tuberosum]
Length = 255
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKRHREDD + KR+ D ESRRNSDH+SRPEKNPRFRESGDSD+++DDDRK+R+
Sbjct: 196 DYHRKRHREDDHPRPDYPKRTYDRESRRNSDHESRPEKNPRFRESGDSDEEDDDDRKRRT 255
>gi|224460061|gb|ACN43581.1| nuclear cap-binding protein [Solanum tuberosum]
Length = 255
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKRHREDD + KR+ D ESRRNSDH+SRPEKNPRFRESGDSD+++DDDRK+R+
Sbjct: 196 DYHRKRHREDDHPRPDYPKRTYDRESRRNSDHESRPEKNPRFRESGDSDEEDDDDRKRRT 255
>gi|297791443|ref|XP_002863606.1| cap-binding protein 20 [Arabidopsis lyrata subsp. lyrata]
gi|297309441|gb|EFH39865.1| cap-binding protein 20 [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQ 75
+ DY RKR R+DDR+ + S+R+ D ESRR++DHD RPEKNPRFRESGDSDDD +DDRK+
Sbjct: 196 RGDYHRKRQRDDDRYGRDNSRRNTDHESRRDTDHDMRPEKNPRFRESGDSDDDGEDDRKR 255
Query: 76 RS 77
RS
Sbjct: 256 RS 257
>gi|15241430|ref|NP_199233.1| nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]
gi|145334719|ref|NP_001078705.1| nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]
gi|75338554|sp|Q9XFD1.1|NCBP2_ARATH RecName: Full=Nuclear cap-binding protein subunit 2; AltName:
Full=20 kDa nuclear cap-binding protein; AltName:
Full=NCBP 20 kDa subunit; Short=AtCBP20
gi|4768968|gb|AAD29697.1|AF140219_1 nuclear cap-binding protein [Arabidopsis thaliana]
gi|9759521|dbj|BAB10987.1| nuclear cap-binding protein; CBP20 [Arabidopsis thaliana]
gi|28466941|gb|AAO44079.1| At5g44200 [Arabidopsis thaliana]
gi|110735694|dbj|BAE99827.1| nuclear cap-binding protein [Arabidopsis thaliana]
gi|332007690|gb|AED95073.1| nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]
gi|332007691|gb|AED95074.1| nuclear cap-binding protein subunit 2 [Arabidopsis thaliana]
Length = 257
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
DY RKR R+DDR+ + S+R+ D ESRR++D D RPEKNPRFRESGDSDDD +DDRK+RS
Sbjct: 198 DYHRKRQRDDDRYGRDNSRRNTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRRS 257
>gi|363808374|ref|NP_001242001.1| uncharacterized protein LOC100789535 [Glycine max]
gi|255647255|gb|ACU24095.1| unknown [Glycine max]
Length = 235
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRN 46
DY RKRHR+DDRH HE+SKR++D ESRR
Sbjct: 194 DYYRKRHRDDDRHIHESSKRNSDHESRRT 222
>gi|168472717|gb|ACA24134.1| cap-binding protein CBP20 [Lolium temulentum]
Length = 231
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 8/51 (15%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDD 68
DYQR+R D TS+R+ D +SRR+++ + PEKNPRFRE GDSD++
Sbjct: 188 DYQRRRSGPD------TSRRAPDSDSRRDANQE--PEKNPRFREKGDSDEE 230
>gi|242065748|ref|XP_002454163.1| hypothetical protein SORBIDRAFT_04g025800 [Sorghum bicolor]
gi|241933994|gb|EES07139.1| hypothetical protein SORBIDRAFT_04g025800 [Sorghum bicolor]
Length = 242
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 9/61 (14%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQ 75
+ DYQRKR+R DDR A E SKR+ D SD EKNPRFRE GDSD++EDD K+
Sbjct: 189 RGDYQRKRYRNDDRSAPEESKRAPD------SDP---AEKNPRFREKGDSDEEEDDYDKR 239
Query: 76 R 76
R
Sbjct: 240 R 240
>gi|116791485|gb|ABK25999.1| unknown [Picea sitchensis]
Length = 235
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 14/50 (28%)
Query: 21 RKRHR-EDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDE 69
RKR+R EDDR + SKRS R EKNPRFRE GDSD+DE
Sbjct: 195 RKRYRSEDDRPPTDVSKRS-------------RQEKNPRFRERGDSDEDE 231
>gi|226492429|ref|NP_001147247.1| LOC100280855 [Zea mays]
gi|195609038|gb|ACG26349.1| nuclear cap-binding protein subunit 2 [Zea mays]
gi|219886131|gb|ACL53440.1| unknown [Zea mays]
gi|413923017|gb|AFW62949.1| nuclear cap-binding protein subunit 2 [Zea mays]
Length = 242
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFR 60
+ DYQRKR+R DDR A E SKR+ D SD EKNPRFR
Sbjct: 189 RGDYQRKRYRNDDRSAPEESKRAPD------SDP---AEKNPRFR 224
>gi|224031685|gb|ACN34918.1| unknown [Zea mays]
gi|413923018|gb|AFW62950.1| hypothetical protein ZEAMMB73_103683 [Zea mays]
Length = 273
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFR 60
+ DYQRKR+R DDR A E SKR+ D SD EKNPRFR
Sbjct: 220 RGDYQRKRYRNDDRSAPEESKRAPD------SDPA---EKNPRFR 255
>gi|222623228|gb|EEE57360.1| hypothetical protein OsJ_07502 [Oryza sativa Japonica Group]
Length = 91
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 7/56 (12%)
Query: 8 GALIGMAEKTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESG 63
G + + + DYQRKR+R D+R +S+R+ D E +R++ DS EKNPRFRE G
Sbjct: 28 GQMTEVTGREDYQRKRYRNDER----SSQRAPDSEFKRDA-IDS--EKNPRFREKG 76
>gi|195659473|gb|ACG49204.1| nuclear cap-binding protein subunit 2 [Zea mays]
gi|413923013|gb|AFW62945.1| nuclear cap-binding protein subunit 2 [Zea mays]
Length = 202
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFR 60
+ DYQRKR+R DDR A E SKR+ D SD EKNPRFR
Sbjct: 149 RGDYQRKRYRNDDRSAPEESKRAPD------SDPA---EKNPRFR 184
>gi|218191154|gb|EEC73581.1| hypothetical protein OsI_08042 [Oryza sativa Indica Group]
Length = 80
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 8 GALIGMAEKTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESG 63
GA A YQRKR+R D+R +S+R+ D E +R++ DS EKNPRFRE G
Sbjct: 17 GAFQPNAPPQYYQRKRYRNDER----SSQRAPDSEFKRDA-IDS--EKNPRFREKG 65
>gi|219887841|gb|ACL54295.1| unknown [Zea mays]
gi|413923011|gb|AFW62943.1| hypothetical protein ZEAMMB73_103683 [Zea mays]
Length = 144
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 9/45 (20%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFR 60
+ DYQRKR+R DDR A E SKR+ D + EKNPRFR
Sbjct: 91 RGDYQRKRYRNDDRSAPEESKRAPDSDP---------AEKNPRFR 126
>gi|413923016|gb|AFW62948.1| hypothetical protein ZEAMMB73_103683 [Zea mays]
Length = 248
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 16 KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFR 60
+ DYQRKR+R DDR A E SKR+ D + + EKNPRFR
Sbjct: 189 RGDYQRKRYRNDDRSAPEESKRAPDSDPAVLALFL---EKNPRFR 230
>gi|223973755|gb|ACN31065.1| unknown [Zea mays]
Length = 216
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 10/49 (20%)
Query: 16 KTDYQRKRHRE-DDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESG 63
+ DYQRKR+R DDR A E SKR+ D SD EKNPRFRE G
Sbjct: 162 RGDYQRKRYRSSDDRSAPEESKRAPD------SDPA---EKNPRFREKG 201
>gi|115447265|ref|NP_001047412.1| Os02g0612300 [Oryza sativa Japonica Group]
gi|75327885|sp|Q84L14.1|NCBP2_ORYSJ RecName: Full=Nuclear cap-binding protein subunit 2; AltName:
Full=20 kDa nuclear cap-binding protein; AltName:
Full=NCBP 20 kDa subunit; Short=CBP20
gi|30692291|gb|AAP33448.1| cap-binding protein CBP20 [Oryza sativa Japonica Group]
gi|47497621|dbj|BAD19690.1| cap-binding protein CBP20 [Oryza sativa Japonica Group]
gi|113536943|dbj|BAF09326.1| Os02g0612300 [Oryza sativa Japonica Group]
gi|215715365|dbj|BAG95116.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 243
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 7/46 (15%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESG 63
DYQRKR+R D+R +S+R+ D E +R++ DS EKNPRFRE G
Sbjct: 190 DYQRKRYRNDER----SSQRAPDSEFKRDA-IDS--EKNPRFREKG 228
>gi|226502054|ref|NP_001150096.1| LOC100283725 [Zea mays]
gi|195636696|gb|ACG37816.1| nuclear cap-binding protein subunit 2 [Zea mays]
Length = 243
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 41/62 (66%), Gaps = 10/62 (16%)
Query: 16 KTDYQRKRHRE-DDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRK 74
+ DYQRKR+R DDR A E SKR+ D SD EKNPRFRE GDSD++EDD K
Sbjct: 189 RGDYQRKRYRSSDDRSAPEESKRAPD------SDPA---EKNPRFREKGDSDEEEDDYDK 239
Query: 75 QR 76
+R
Sbjct: 240 RR 241
>gi|149393013|gb|ABR26569.1| cap-binding protein CPB20 [Lolium perenne]
Length = 218
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 8/44 (18%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRE 61
DYQR+R D TS+R+ D +SRR+++ + PEKNPRFRE
Sbjct: 182 DYQRRRSGPD------TSRRAPDSDSRRDANQE--PEKNPRFRE 217
>gi|357150102|ref|XP_003575342.1| PREDICTED: nuclear cap-binding protein subunit 2-like isoform 1
[Brachypodium distachyon]
Length = 240
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 8/59 (13%)
Query: 18 DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQR 76
DYQR+R A + S+R+ D +SR++++ + PEKNPRFRE GDSDD++DD K+R
Sbjct: 188 DYQRRRS------APDMSRRAPDSDSRKDANQE--PEKNPRFREKGDSDDEDDDYDKKR 238
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.125 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,276,710,736
Number of Sequences: 23463169
Number of extensions: 45354049
Number of successful extensions: 596554
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 889
Number of HSP's that attempted gapping in prelim test: 583624
Number of HSP's gapped (non-prelim): 12322
length of query: 77
length of database: 8,064,228,071
effective HSP length: 48
effective length of query: 29
effective length of database: 6,937,995,959
effective search space: 201201882811
effective search space used: 201201882811
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 69 (31.2 bits)