BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039315
         (77 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
           GN=CBP20 PE=1 SV=1
          Length = 257

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 50/60 (83%)

Query: 18  DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESGDSDDDEDDDRKQRS 77
           DY RKR R+DDR+  + S+R+ D ESRR++D D RPEKNPRFRESGDSDDD +DDRK+RS
Sbjct: 198 DYHRKRQRDDDRYGRDNSRRNTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRRS 257


>sp|Q84L14|NCBP2_ORYSJ Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp.
           japonica GN=CBP20 PE=2 SV=1
          Length = 243

 Score = 37.4 bits (85), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 7/46 (15%)

Query: 18  DYQRKRHREDDRHAHETSKRSADFESRRNSDHDSRPEKNPRFRESG 63
           DYQRKR+R D+R    +S+R+ D E +R++  DS  EKNPRFRE G
Sbjct: 190 DYQRKRYRNDER----SSQRAPDSEFKRDA-IDS--EKNPRFREKG 228


>sp|A7M9B2|YCF1_CUSRE Putative membrane protein ycf1 OS=Cuscuta reflexa GN=ycf1 PE=3 SV=1
          Length = 1750

 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 16   KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDS--RPEKNPRFRESGDSDDDEDDDR 73
            +TD ++K   +  + +   SK+ ++ +S++ S+ DS  + E + + +   DS    + D 
Sbjct: 1419 ETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDS 1478

Query: 74   KQRS 77
            KQ+S
Sbjct: 1479 KQKS 1482



 Score = 29.6 bits (65), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 16   KTDYQRKRHREDDRHAHETSKRSADFESRRNSDHDS--RPEKNPRFRESGDSDDDEDDDR 73
            +TD ++K   +  + +   SK+ ++ +S++ S+ DS  + E + + +   DS    + D 
Sbjct: 1427 ETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDSKQKSETDS 1486

Query: 74   KQRS 77
            KQ++
Sbjct: 1487 KQKN 1490


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,481,305
Number of Sequences: 539616
Number of extensions: 1081840
Number of successful extensions: 17338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 10643
Number of HSP's gapped (non-prelim): 5664
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)