Query 039315
Match_columns 77
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 08:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08331 DUF1730: Domain of un 28.9 25 0.00054 21.4 0.6 17 5-21 34-50 (78)
2 PF15434 FAM104: Family 104 25.4 43 0.00093 23.6 1.3 18 21-38 1-21 (110)
3 COG3162 Predicted membrane pro 17.6 38 0.00081 23.6 -0.3 10 52-61 8-17 (102)
4 PF10587 EF-1_beta_acid: Eukar 17.1 59 0.0013 18.1 0.5 7 65-71 4-10 (28)
5 KOG1736 Glia maturation factor 15.7 63 0.0014 23.7 0.5 9 52-60 63-71 (143)
6 PF06679 DUF1180: Protein of u 10.0 1.2E+02 0.0026 21.9 0.5 6 53-58 139-144 (163)
7 KOG1762 60s acidic ribosomal p 9.3 94 0.002 21.9 -0.2 16 53-68 92-107 (114)
8 PF06857 ACP: Malonate decarbo 8.8 1.2E+02 0.0026 19.7 0.1 10 2-11 62-71 (87)
9 PF12576 DUF3754: Protein of u 8.6 1.6E+02 0.0035 19.9 0.7 8 53-60 53-60 (141)
10 PF06084 Cytomega_TRL10: Cytom 8.2 2.5E+02 0.0055 20.6 1.6 16 57-72 133-148 (150)
No 1
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=28.88 E-value=25 Score=21.43 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=13.7
Q ss_pred ccccccccCCCCchHHh
Q 039315 5 TDMGALIGMAEKTDYQR 21 (77)
Q Consensus 5 ~d~ga~~~~~~~rDY~R 21 (77)
...|.+-.-+.|+|||.
T Consensus 34 ~~~g~iarYA~G~DYH~ 50 (78)
T PF08331_consen 34 PGRGRIARYAWGRDYHK 50 (78)
T ss_pred CCCeeEeehhccCChHH
Confidence 44577788899999997
No 2
>PF15434 FAM104: Family 104
Probab=25.43 E-value=43 Score=23.64 Aligned_cols=18 Identities=50% Similarity=0.769 Sum_probs=11.0
Q ss_pred hhhccc---cCcCcccccccC
Q 039315 21 RKRHRE---DDRHAHETSKRS 38 (77)
Q Consensus 21 RKR~Rd---DDr~~~e~SkR~ 38 (77)
|||.|+ +|-|..--+||+
T Consensus 1 rKRrRng~eEd~h~~pq~KR~ 21 (110)
T PF15434_consen 1 RKRRRNGNEEDNHHSPQPKRS 21 (110)
T ss_pred CCcccCCcccccccCCccccc
Confidence 577773 355555566766
No 3
>COG3162 Predicted membrane protein [Function unknown]
Probab=17.63 E-value=38 Score=23.58 Aligned_cols=10 Identities=70% Similarity=1.102 Sum_probs=8.9
Q ss_pred CCCCCCcccc
Q 039315 52 RPEKNPRFRE 61 (77)
Q Consensus 52 rpEKNPRFRE 61 (77)
+++.||+|+|
T Consensus 8 ~i~a~p~f~e 17 (102)
T COG3162 8 RIAANPRFRE 17 (102)
T ss_pred ccccCHhHHH
Confidence 6899999997
No 4
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=17.06 E-value=59 Score=18.08 Aligned_cols=7 Identities=71% Similarity=1.203 Sum_probs=3.3
Q ss_pred CCCcchh
Q 039315 65 SDDDEDD 71 (77)
Q Consensus 65 SDdee~d 71 (77)
||+||+|
T Consensus 4 SddEeed 10 (28)
T PF10587_consen 4 SDDEEED 10 (28)
T ss_pred Ccccccc
Confidence 4555444
No 5
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=15.65 E-value=63 Score=23.75 Aligned_cols=9 Identities=56% Similarity=1.099 Sum_probs=7.6
Q ss_pred CCCCCCccc
Q 039315 52 RPEKNPRFR 60 (77)
Q Consensus 52 rpEKNPRFR 60 (77)
-||.||||-
T Consensus 63 Lpe~~PRFv 71 (143)
T KOG1736|consen 63 LPERQPRFV 71 (143)
T ss_pred ccccCCcEE
Confidence 489999995
No 6
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=9.95 E-value=1.2e+02 Score=21.93 Aligned_cols=6 Identities=33% Similarity=0.307 Sum_probs=2.6
Q ss_pred CCCCCc
Q 039315 53 PEKNPR 58 (77)
Q Consensus 53 pEKNPR 58 (77)
-|-.|-
T Consensus 139 ~Em~pL 144 (163)
T PF06679_consen 139 VEMAPL 144 (163)
T ss_pred ceeccc
Confidence 344444
No 7
>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis]
Probab=9.34 E-value=94 Score=21.87 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=12.6
Q ss_pred CCCCCcccccCCCCCc
Q 039315 53 PEKNPRFRESGDSDDD 68 (77)
Q Consensus 53 pEKNPRFREsgdSDde 68 (77)
-+.|..+.||++|||+
T Consensus 92 kk~eak~EeseesddD 107 (114)
T KOG1762|consen 92 KKEEAKKEESEESDDD 107 (114)
T ss_pred HHHHhhhhhhcccccc
Confidence 3457788999999886
No 8
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=8.83 E-value=1.2e+02 Score=19.72 Aligned_cols=10 Identities=60% Similarity=0.640 Sum_probs=7.7
Q ss_pred cccccccccc
Q 039315 2 VEATDMGALI 11 (77)
Q Consensus 2 ~~~~d~ga~~ 11 (77)
|++.|+|||-
T Consensus 62 v~i~D~GAld 71 (87)
T PF06857_consen 62 VEINDKGALD 71 (87)
T ss_pred EEEEeCCCCH
Confidence 5678999974
No 9
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=8.63 E-value=1.6e+02 Score=19.91 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=6.0
Q ss_pred CCCCCccc
Q 039315 53 PEKNPRFR 60 (77)
Q Consensus 53 pEKNPRFR 60 (77)
|||+|+|+
T Consensus 53 P~~kv~~~ 60 (141)
T PF12576_consen 53 PEKKVRMR 60 (141)
T ss_pred CCCcCCcC
Confidence 77887775
No 10
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=8.18 E-value=2.5e+02 Score=20.63 Aligned_cols=16 Identities=31% Similarity=0.844 Sum_probs=10.1
Q ss_pred CcccccCCCCCcchhh
Q 039315 57 PRFRESGDSDDDEDDD 72 (77)
Q Consensus 57 PRFREsgdSDdee~dD 72 (77)
|-+--.|..||||||+
T Consensus 133 p~~~~~~~dd~e~ed~ 148 (150)
T PF06084_consen 133 PPIEPNGTDDEEDEDD 148 (150)
T ss_pred CcccCCCCCccccccc
Confidence 4455567777777764
Done!