Query 039315
Match_columns 77
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 14:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brq_C Integrin beta-7 subunit 8.8 92 0.0032 16.0 0.4 11 54-64 18-28 (31)
2 3dui_A Beta-galactoside-bindin 6.5 73 0.0025 20.0 -0.8 9 55-63 47-55 (135)
3 2rr3_B OSBP, oxysterol-binding 6.0 1.8E+02 0.0061 17.1 0.8 10 62-71 9-18 (47)
4 1is3_A Congerin II; complex wi 5.9 1.1E+02 0.0039 19.2 -0.1 10 55-64 45-54 (135)
5 3v5w_G G gamma-I, guanine nucl 5.9 1.5E+02 0.005 18.5 0.4 8 54-62 63-70 (77)
6 3us3_A Calsequestrin-1; calciu 5.8 1.3E+02 0.0043 21.0 0.0 9 63-71 356-364 (367)
7 2dt7_A Splicing factor 3A subu 5.7 1.5E+02 0.0051 15.9 0.3 7 17-23 23-29 (38)
8 1wyn_A Calponin-2; CH domain, 5.2 2.4E+02 0.0083 18.1 1.1 10 54-63 136-146 (146)
9 1g9g_A Cellulase CEL48F; proce 4.8 1.9E+02 0.0064 24.5 0.4 8 1-8 42-49 (629)
10 2iu1_A EIF5, eukaryotic transl 4.6 2.2E+02 0.0076 19.7 0.7 12 61-72 157-168 (208)
No 1
>2brq_C Integrin beta-7 subunit; structural protein, cytoskeleton/complex, actin-binding, cytoskeleton, immunoglobulin like, cell adhesion; HET: GSH; 2.10A {Homo sapiens}
Probab=8.80 E-value=92 Score=16.00 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=7.3
Q ss_pred CCCCcccccCC
Q 039315 54 EKNPRFRESGD 64 (77)
Q Consensus 54 EKNPRFREsgd 64 (77)
-+||.|++.|-
T Consensus 18 f~Np~~~~~~~ 28 (31)
T 2brq_C 18 TINPRFQEADS 28 (31)
T ss_pred EECccccccCc
Confidence 35788877653
No 2
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} SCOP: b.29.1.3
Probab=6.48 E-value=73 Score=20.03 Aligned_cols=9 Identities=56% Similarity=0.958 Sum_probs=6.5
Q ss_pred CCCcccccC
Q 039315 55 KNPRFRESG 63 (77)
Q Consensus 55 KNPRFREsg 63 (77)
=||||.++|
T Consensus 47 fnpRf~~~~ 55 (135)
T 3dui_A 47 FNPRFDAHG 55 (135)
T ss_dssp EEEEEEETT
T ss_pred EEeecCcCC
Confidence 488888754
No 3
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=5.99 E-value=1.8e+02 Score=17.09 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=5.6
Q ss_pred cCCCCCcchh
Q 039315 62 SGDSDDDEDD 71 (77)
Q Consensus 62 sgdSDdee~d 71 (77)
+|+..||+||
T Consensus 9 KGe~SdEDed 18 (47)
T 2rr3_B 9 KGDMSDEDDE 18 (47)
T ss_dssp CCCSCCCCCS
T ss_pred cccccccccc
Confidence 5665555554
No 4
>1is3_A Congerin II; complex with lactose and MES, sugar binding protein; HET: LAT MES; 1.45A {Conger myriaster} SCOP: b.29.1.3 PDB: 1is4_A* 1is5_A 1is6_A* 1wld_A* 1wlw_A* 1wlc_A* 3ak0_A* 3ajz_A*
Probab=5.94 E-value=1.1e+02 Score=19.15 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=6.9
Q ss_pred CCCcccccCC
Q 039315 55 KNPRFRESGD 64 (77)
Q Consensus 55 KNPRFREsgd 64 (77)
=||||.++|+
T Consensus 45 fnpRf~~~~~ 54 (135)
T 1is3_A 45 MDHRFSYGAD 54 (135)
T ss_dssp EEEESSBTTB
T ss_pred EeecCCCCCC
Confidence 3788886654
No 5
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=5.92 E-value=1.5e+02 Score=18.53 Aligned_cols=8 Identities=63% Similarity=1.174 Sum_probs=5.0
Q ss_pred CCCCccccc
Q 039315 54 EKNPRFRES 62 (77)
Q Consensus 54 EKNPRFREs 62 (77)
.+|| |+|+
T Consensus 63 ~~NP-FkeK 70 (77)
T 3v5w_G 63 SENP-FREK 70 (77)
T ss_dssp GGCT-TTTC
T ss_pred CCCC-CCCC
Confidence 4575 7775
No 6
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=5.76 E-value=1.3e+02 Score=20.99 Aligned_cols=9 Identities=56% Similarity=1.092 Sum_probs=0.0
Q ss_pred CCCCCcchh
Q 039315 63 GDSDDDEDD 71 (77)
Q Consensus 63 gdSDdee~d 71 (77)
+|+||+++|
T Consensus 356 ~~~~~~~~~ 364 (367)
T 3us3_A 356 DDDEDDDDD 364 (367)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344444443
No 7
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.72 E-value=1.5e+02 Score=15.91 Aligned_cols=7 Identities=29% Similarity=0.838 Sum_probs=5.0
Q ss_pred chHHhhh
Q 039315 17 TDYQRKR 23 (77)
Q Consensus 17 rDY~RKR 23 (77)
|+||||.
T Consensus 23 ke~Hrr~ 29 (38)
T 2dt7_A 23 KEFHRKH 29 (38)
T ss_dssp HHHHHSC
T ss_pred HHHHHhC
Confidence 6788764
No 8
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=5.23 E-value=2.4e+02 Score=18.13 Aligned_cols=10 Identities=50% Similarity=0.488 Sum_probs=4.7
Q ss_pred CCCCc-ccccC
Q 039315 54 EKNPR-FRESG 63 (77)
Q Consensus 54 EKNPR-FREsg 63 (77)
+||+| |-|+|
T Consensus 136 ~~~~r~f~e~~ 146 (146)
T 1wyn_A 136 EKQERSGPSSG 146 (146)
T ss_dssp CCCCCCSSCCC
T ss_pred ccCCCCCCCCC
Confidence 44543 55544
No 9
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=4.77 E-value=1.9e+02 Score=24.46 Aligned_cols=8 Identities=75% Similarity=1.037 Sum_probs=0.0
Q ss_pred Cccccccc
Q 039315 1 MVEATDMG 8 (77)
Q Consensus 1 ~~~~~d~g 8 (77)
||||.|+|
T Consensus 42 ivEApDyG 49 (629)
T 1g9g_A 42 MVEAPDYG 49 (629)
T ss_dssp CCSSSSST
T ss_pred eEecCCCC
No 10
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=4.64 E-value=2.2e+02 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.767 Sum_probs=0.0
Q ss_pred ccCCCCCcchhh
Q 039315 61 ESGDSDDDEDDD 72 (77)
Q Consensus 61 EsgdSDdee~dD 72 (77)
|+.+++||++|+
T Consensus 157 Es~eeeeeeed~ 168 (208)
T 2iu1_A 157 ESSGGEEEDEDE 168 (208)
T ss_dssp CCCCCCCCCCSC
T ss_pred cccccccccccc
Done!