Query 039315
Match_columns 77
No_of_seqs 14 out of 16
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 14:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039315.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039315hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r5ba2 b.44.1.1 (A:555-622) E 34.5 6.9 0.0005 21.4 1.1 13 53-65 52-64 (68)
2 d1f60a2 b.44.1.1 (A:335-441) E 12.7 22 0.0016 21.0 0.1 13 53-65 51-63 (107)
3 d1e3pa2 b.40.4.5 (A:656-717) S 11.7 26 0.0019 18.4 0.3 14 4-17 6-19 (62)
4 d1wzca1 c.108.1.10 (A:1-243) P 9.5 28 0.002 19.6 -0.2 15 1-15 211-225 (243)
5 d1tbge_ a.137.3.1 (E:) Transdu 5.7 74 0.0054 17.9 0.4 8 54-62 60-67 (68)
6 d1b9oa_ d.2.1.2 (A:) alpha-Lac 5.1 75 0.0054 19.4 0.2 11 4-14 47-57 (123)
7 d2incc1 d.15.12.1 (C:3-85) Tol 4.3 1.1E+02 0.0084 18.0 0.6 16 51-66 43-58 (83)
8 d1s2oa1 c.108.1.10 (A:1-244) S 4.1 69 0.005 18.3 -0.5 17 1-17 193-209 (244)
9 d2a9da1 b.1.18.6 (A:344-466) S 3.8 97 0.0071 18.2 -0.0 13 1-13 85-98 (123)
10 d1yroa1 d.2.1.2 (A:1-123) alph 3.7 1.1E+02 0.0081 18.5 0.2 7 5-11 48-54 (123)
No 1
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=34.53 E-value=6.9 Score=21.39 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.5
Q ss_pred CCCCCcccccCCC
Q 039315 53 PEKNPRFRESGDS 65 (77)
Q Consensus 53 pEKNPRFREsgdS 65 (77)
.++||+|-.+|+.
T Consensus 52 ~k~~P~flk~G~~ 64 (68)
T d1r5ba2 52 SKKPPMFATKGMK 64 (68)
T ss_dssp CSSCCSBCCTTCB
T ss_pred eccCCceecCCCE
Confidence 6899999999985
No 2
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.70 E-value=22 Score=21.00 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=11.0
Q ss_pred CCCCCcccccCCC
Q 039315 53 PEKNPRFRESGDS 65 (77)
Q Consensus 53 pEKNPRFREsgdS 65 (77)
-++||+|-.+|++
T Consensus 51 ~~~~P~~l~~g~~ 63 (107)
T d1f60a2 51 LEDHPKFLKSGDA 63 (107)
T ss_dssp EEESCSCBCTTCE
T ss_pred eccCCcccCCCCE
Confidence 4689999999975
No 3
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]}
Probab=11.69 E-value=26 Score=18.35 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=7.7
Q ss_pred cccccccccCCCCc
Q 039315 4 ATDMGALIGMAEKT 17 (77)
Q Consensus 4 ~~d~ga~~~~~~~r 17 (77)
-+|||||+-...|.
T Consensus 6 i~~fG~FV~l~~g~ 19 (62)
T d1e3pa2 6 TTTFGAFVSLLPGK 19 (62)
T ss_dssp CC-CSCEECCC---
T ss_pred EEeceEEEEecCCc
Confidence 47889998776554
No 4
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.49 E-value=28 Score=19.63 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.2
Q ss_pred CcccccccccccCCC
Q 039315 1 MVEATDMGALIGMAE 15 (77)
Q Consensus 1 ~~~~~d~ga~~~~~~ 15 (77)
|++++++|...+|++
T Consensus 211 Ml~~a~~~va~~Na~ 225 (243)
T d1wzca1 211 MFEVVDKVFIVGSLK 225 (243)
T ss_dssp HHTTSSEEEEESSCC
T ss_pred HHHcCCcEEEeCCCC
Confidence 678889998888874
No 5
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.66 E-value=74 Score=17.92 Aligned_cols=8 Identities=63% Similarity=1.186 Sum_probs=4.2
Q ss_pred CCCCccccc
Q 039315 54 EKNPRFRES 62 (77)
Q Consensus 54 EKNPRFREs 62 (77)
.+|| |+|+
T Consensus 60 ~~NP-fkEK 67 (68)
T d1tbge_ 60 DKNP-FKEL 67 (68)
T ss_dssp GGCT-TCCC
T ss_pred CCCC-CCCC
Confidence 4564 5554
No 6
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.15 E-value=75 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=8.0
Q ss_pred cccccccccCC
Q 039315 4 ATDMGALIGMA 14 (77)
Q Consensus 4 ~~d~ga~~~~~ 14 (77)
.+|||.||-+-
T Consensus 47 S~dYGiFQIn~ 57 (123)
T d1b9oa_ 47 STEYGLFQISN 57 (123)
T ss_dssp CEEETTTTEET
T ss_pred CcccceEeecc
Confidence 36899998653
No 7
>d2incc1 d.15.12.1 (C:3-85) Toluene, o-xylene monooxygenase oxygenase subunit TouB {Pseudomonas stutzeri [TaxId: 316]}
Probab=4.26 E-value=1.1e+02 Score=18.04 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=12.6
Q ss_pred CCCCCCCcccccCCCC
Q 039315 51 SRPEKNPRFRESGDSD 66 (77)
Q Consensus 51 srpEKNPRFREsgdSD 66 (77)
++|+++++.|--|+..
T Consensus 43 p~P~~~~rvr~~~~ge 58 (83)
T d2incc1 43 PQPEKILRVRRHEDGT 58 (83)
T ss_dssp CCTTSEEEEEETTTCC
T ss_pred CCCCCccEEEEcCCCc
Confidence 4699999999877653
No 8
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=4.09 E-value=69 Score=18.34 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=12.1
Q ss_pred CcccccccccccCCCCc
Q 039315 1 MVEATDMGALIGMAEKT 17 (77)
Q Consensus 1 ~~~~~d~ga~~~~~~~r 17 (77)
|.+++++|...+|++..
T Consensus 193 Ml~~~~~~vav~na~~~ 209 (244)
T d1s2oa1 193 LFETSARGVIVRNAQPE 209 (244)
T ss_dssp HHTSSSEEEECTTCCHH
T ss_pred HHhhCCcEEEeCCCCHH
Confidence 56777888877777654
No 9
>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=3.80 E-value=97 Score=18.16 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=9.9
Q ss_pred Ccccccc-cccccC
Q 039315 1 MVEATDM-GALIGM 13 (77)
Q Consensus 1 ~~~~~d~-ga~~~~ 13 (77)
|+-|+|. |..||.
T Consensus 85 ~~RA~D~~G~~QP~ 98 (123)
T d2a9da1 85 VCKAVDSSYNVQPD 98 (123)
T ss_dssp EEEEEETTCCBCCS
T ss_pred EEEEEcCCCCcCCC
Confidence 4678888 888883
No 10
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.75 E-value=1.1e+02 Score=18.45 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=0.0
Q ss_pred ccccccc
Q 039315 5 TDMGALI 11 (77)
Q Consensus 5 ~d~ga~~ 11 (77)
+|||.||
T Consensus 48 ~dyGlFQ 54 (123)
T d1yroa1 48 TEYGLFQ 54 (123)
T ss_dssp EEETTTT
T ss_pred cccccee
Done!