Query 039324
Match_columns 462
No_of_seqs 180 out of 1507
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 99.9 4E-27 8.7E-32 202.3 6.1 100 72-176 1-114 (114)
2 cd00028 B_lectin Bulb-type man 99.9 1.1E-24 2.4E-29 187.8 14.3 111 30-150 3-116 (116)
3 smart00108 B_lectin Bulb-type 99.9 1.4E-23 3E-28 180.4 13.6 110 29-149 2-114 (114)
4 PF00954 S_locus_glycop: S-loc 99.9 5.8E-22 1.3E-26 169.3 10.1 110 206-329 1-110 (110)
5 PF08276 PAN_2: PAN-like domai 99.5 1.5E-14 3.2E-19 112.0 5.2 59 357-415 4-66 (66)
6 cd01098 PAN_AP_plant Plant PAN 99.5 1.4E-13 3.1E-18 111.0 7.2 72 357-432 11-84 (84)
7 cd00129 PAN_APPLE PAN/APPLE-li 99.3 4.3E-12 9.2E-17 101.8 6.1 66 359-431 10-80 (80)
8 smart00473 PAN_AP divergent su 98.7 7.9E-08 1.7E-12 75.7 7.3 71 358-431 4-78 (78)
9 smart00108 B_lectin Bulb-type 98.6 2.8E-07 6.2E-12 79.0 9.3 83 94-209 24-112 (114)
10 cd00028 B_lectin Bulb-type man 98.6 3.1E-07 6.8E-12 79.0 9.0 84 94-210 24-114 (116)
11 PF01453 B_lectin: D-mannose b 98.2 2E-05 4.4E-10 67.6 10.5 99 37-150 11-113 (114)
12 cd01100 APPLE_Factor_XI_like S 97.8 2E-05 4.4E-10 61.9 3.9 49 362-411 8-58 (73)
13 smart00223 APPLE APPLE domain. 94.4 0.05 1.1E-06 43.5 3.9 48 363-410 6-57 (79)
14 PF14295 PAN_4: PAN domain; PD 93.8 0.055 1.2E-06 38.6 2.7 42 367-408 2-51 (51)
15 PF00024 PAN_1: PAN domain Thi 92.7 0.11 2.3E-06 40.5 3.1 52 359-411 3-57 (79)
16 smart00605 CW CW domain. 87.1 4.5 9.8E-05 33.1 8.3 55 377-433 20-76 (94)
17 PF08277 PAN_3: PAN-like domai 86.6 3.4 7.3E-05 31.6 6.9 32 377-409 18-49 (71)
18 PF07645 EGF_CA: Calcium-bindi 84.1 0.48 1E-05 32.8 0.9 33 290-327 3-35 (42)
19 cd01099 PAN_AP_HGF Subfamily o 83.7 3.2 6.9E-05 33.0 5.6 32 378-410 24-59 (80)
20 cd00053 EGF Epidermal growth f 82.2 1.2 2.6E-05 28.4 2.3 27 301-327 5-31 (36)
21 smart00179 EGF_CA Calcium-bind 76.8 2.3 5E-05 28.0 2.3 26 301-326 8-33 (39)
22 PF12947 EGF_3: EGF domain; I 75.2 0.86 1.9E-05 30.7 -0.2 27 301-327 5-31 (36)
23 cd00054 EGF_CA Calcium-binding 71.8 3.6 7.7E-05 26.6 2.3 27 301-327 8-34 (38)
24 PF00008 EGF: EGF-like domain 64.1 1.6 3.5E-05 28.3 -0.7 25 302-326 4-29 (32)
25 PF01683 EB: EB module; Inter 63.8 6.5 0.00014 28.3 2.4 32 287-328 17-48 (52)
26 PF12661 hEGF: Human growth fa 60.0 2.2 4.7E-05 22.1 -0.5 10 318-327 1-10 (13)
27 PF12662 cEGF: Complement Clr- 56.6 5.2 0.00011 24.4 0.7 11 318-328 3-13 (24)
28 PF07974 EGF_2: EGF-like domai 56.0 8.4 0.00018 25.2 1.6 24 302-327 6-29 (32)
29 smart00181 EGF Epidermal growt 53.9 12 0.00026 24.0 2.2 25 302-327 6-30 (35)
30 PF09064 Tme5_EGF_like: Thromb 48.7 11 0.00023 25.1 1.2 18 309-327 11-28 (34)
31 PF13360 PQQ_2: PQQ-like domai 44.0 61 0.0013 30.1 6.3 74 71-146 11-102 (238)
32 PHA02887 EGF-like protein; Pro 38.1 39 0.00084 29.0 3.3 34 288-326 82-117 (126)
33 PF13360 PQQ_2: PQQ-like domai 36.0 3.4E+02 0.0073 25.0 10.1 75 70-146 53-148 (238)
34 PF12690 BsuPI: Intracellular 34.7 45 0.00099 26.6 3.2 15 101-115 28-42 (82)
35 PF15621 PROL5-SMR: Proline-ri 33.0 27 0.00059 29.8 1.6 30 1-30 1-30 (113)
36 PF11355 DUF3157: Protein of u 31.9 2.6E+02 0.0057 26.3 8.0 28 127-158 140-168 (199)
37 PRK11138 outer membrane biogen 31.4 1.4E+02 0.0029 30.8 7.0 54 91-145 69-145 (394)
38 TIGR03300 assembly_YfgL outer 29.4 1.6E+02 0.0035 29.9 7.0 50 95-145 70-130 (377)
39 KOG1214 Nidogen and related ba 29.2 31 0.00068 39.0 1.7 41 298-341 738-778 (1289)
40 PF14670 FXa_inhibition: Coagu 29.1 16 0.00036 24.5 -0.2 20 309-328 11-30 (36)
41 PRK11138 outer membrane biogen 25.8 7.3E+02 0.016 25.3 15.8 51 95-146 261-320 (394)
42 PRK12618 flgA flagellar basal 23.3 2.1E+02 0.0045 25.4 5.7 56 77-133 80-138 (141)
43 PF07172 GRP: Glycine rich pro 22.0 44 0.00094 27.7 1.0 12 1-12 1-12 (95)
44 PF13570 PQQ_3: PQQ-like domai 21.3 1E+02 0.0022 20.5 2.5 8 109-116 2-9 (40)
45 KOG4649 PQQ (pyrrolo-quinoline 20.4 1.5E+02 0.0033 29.3 4.4 45 72-117 168-217 (354)
46 PF04202 Mfp-3: Foot protein 3 20.1 64 0.0014 24.7 1.4 22 1-22 1-22 (71)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.93 E-value=4e-27 Score=202.25 Aligned_cols=100 Identities=39% Similarity=0.587 Sum_probs=72.7
Q ss_pred CCcEEEEccCCCCCcccC---CCcEEEEeCCe-eEEECCCCcEEEec-CCCC---ccceEEEecCCCeEEEecCCCCcee
Q 039324 72 ERTIIWHANEDNHPVLAP---RGSTLELTATG-LQLKDPGGQAIWDE-KPNK---IVSDAATLDTGNFVLIASGNNSDYA 143 (462)
Q Consensus 72 ~~tvVW~ANr~~~P~~v~---~~~~l~l~~~G-LvL~d~~~~~vWst-~~~~---~~~~a~LldsGNLVL~~~~~~~~~l 143 (462)
++|+||+|||+. | +. ...+|.|+.|| |+|++..++.+|++ ++.+ ....|+|+|+|||||++. .+.+|
T Consensus 1 ~~tvvW~an~~~-p--~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~--~~~~l 75 (114)
T PF01453_consen 1 PRTVVWVANRNS-P--LTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS--SGNVL 75 (114)
T ss_dssp ---------TTE-E--EEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET--TSEEE
T ss_pred Cccccccccccc-c--cccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee--cceEE
Confidence 368999999999 9 52 45899999999 99999888899999 5543 267899999999999998 88999
Q ss_pred eeccCCCccccCCCceeec----c--ceeeeccCCCCCC
Q 039324 144 WQSFKSPTDTILPTQILDL----G--SVLVSRLTETNFS 176 (462)
Q Consensus 144 WQSFD~PTDTLLPGqkL~~----~--~~L~S~~s~~dps 176 (462)
||||||||||+||||+|+. + ..|+||++.+|||
T Consensus 76 W~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 76 WQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp EESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred EeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 9999999999999999886 3 3599999999986
No 2
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.92 E-value=1.1e-24 Score=187.83 Aligned_cols=111 Identities=33% Similarity=0.561 Sum_probs=97.6
Q ss_pred ccccCCCCCeEEeCCCeEEEEEEecCCCCCceEEEEEEeecCCCcEEEEccCCCCCcccCCCcEEEEeCCe-eEEECCCC
Q 039324 30 TLSSTSNNSSWISPSRDFAFGFRQLNNNSDLFLLAIWFNKIPERTIIWHANEDNHPVLAPRGSTLELTATG-LQLKDPGG 108 (462)
Q Consensus 30 ~L~~~~~~~~lvS~~g~F~lGF~~~~~~~~~~~l~Iw~~~~~~~tvVW~ANr~~~P~~v~~~~~l~l~~~G-LvL~d~~~ 108 (462)
.|.. +++|+|+++.|++|||.+ .....++++|||.+.+ .++||+|||+. | ....+.|.|+.+| |+|+|.++
T Consensus 3 ~l~~---~~~l~s~~~~f~~G~~~~-~~q~~dgnlv~~~~~~-~~~vW~snt~~-~--~~~~~~l~l~~dGnLvl~~~~g 74 (116)
T cd00028 3 PLSS---GQTLVSSGSLFELGFFKL-IMQSRDYNLILYKGSS-RTVVWVANRDN-P--SGSSCTLTLQSDGNLVIYDGSG 74 (116)
T ss_pred CcCC---CCEEEeCCCcEEEecccC-CCCCCeEEEEEEeCCC-CeEEEECCCCC-C--CCCCEEEEEecCCCeEEEcCCC
Confidence 4556 899999999999999996 3322389999998876 78999999999 8 7778899999999 99999889
Q ss_pred cEEEecCCCC--ccceEEEecCCCeEEEecCCCCceeeeccCCC
Q 039324 109 QAIWDEKPNK--IVSDAATLDTGNFVLIASGNNSDYAWQSFKSP 150 (462)
Q Consensus 109 ~~vWst~~~~--~~~~a~LldsGNLVL~~~~~~~~~lWQSFD~P 150 (462)
.++|++++.+ +..+|+|+|+|||||++. .+.+||||||||
T Consensus 75 ~~vW~S~~~~~~~~~~~~L~ddGnlvl~~~--~~~~~W~Sf~~P 116 (116)
T cd00028 75 TVVWSSNTTRVNGNYVLVLLDDGNLVLYDS--DGNFLWQSFDYP 116 (116)
T ss_pred cEEEEecccCCCCceEEEEeCCCCEEEECC--CCCEEEcCCCCC
Confidence 9999999864 367899999999999998 789999999999
No 3
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=1.4e-23 Score=180.38 Aligned_cols=110 Identities=34% Similarity=0.546 Sum_probs=95.6
Q ss_pred CccccCCCCCeEEeCCCeEEEEEEecCCCCCceEEEEEEeecCCCcEEEEccCCCCCcccCCCcEEEEeCCe-eEEECCC
Q 039324 29 STLSSTSNNSSWISPSRDFAFGFRQLNNNSDLFLLAIWFNKIPERTIIWHANEDNHPVLAPRGSTLELTATG-LQLKDPG 107 (462)
Q Consensus 29 ~~L~~~~~~~~lvS~~g~F~lGF~~~~~~~~~~~l~Iw~~~~~~~tvVW~ANr~~~P~~v~~~~~l~l~~~G-LvL~d~~ 107 (462)
+.|.. ++.|+|+++.|++|||.+. ...++++|||...+ .++||+|||+. | +...+.|.|+.+| |+|+|.+
T Consensus 2 ~~l~~---~~~l~s~~~~f~~G~~~~~--~q~dgnlV~~~~~~-~~~vW~snt~~-~--~~~~~~l~l~~dGnLvl~~~~ 72 (114)
T smart00108 2 NTLSS---GQTLVSGNSLFELGFFTLI--MQNDYNLILYKSSS-RTVVWVANRDN-P--VSDSCTLTLQSDGNLVLYDGD 72 (114)
T ss_pred cccCC---CCEEecCCCcEeeeccccC--CCCCEEEEEEECCC-CcEEEECCCCC-C--CCCCEEEEEeCCCCEEEEeCC
Confidence 34555 8999999999999999963 23578999998876 78999999999 8 6666899999999 9999988
Q ss_pred CcEEEecCCC-C-ccceEEEecCCCeEEEecCCCCceeeeccCC
Q 039324 108 GQAIWDEKPN-K-IVSDAATLDTGNFVLIASGNNSDYAWQSFKS 149 (462)
Q Consensus 108 ~~~vWst~~~-~-~~~~a~LldsGNLVL~~~~~~~~~lWQSFD~ 149 (462)
+.++|++++. + +...++|+|+|||||++. .+++|||||||
T Consensus 73 g~~vW~S~t~~~~~~~~~~L~ddGnlvl~~~--~~~~~W~Sf~~ 114 (114)
T smart00108 73 GRVVWSSNTTGANGNYVLVLLDDGNLVIYDS--DGNFLWQSFDY 114 (114)
T ss_pred CCEEEEecccCCCCceEEEEeCCCCEEEECC--CCCEEeCCCCC
Confidence 8999999986 2 367899999999999998 78899999997
No 4
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.87 E-value=5.8e-22 Score=169.26 Aligned_cols=110 Identities=26% Similarity=0.438 Sum_probs=86.0
Q ss_pred EecCCCCCCCcCcccEEEEcCcceEEEEEcCceEEEecccCcCCCCCCeEEEEEEccCccEEEEEccCCCCCCCCeEEEe
Q 039324 206 YTSDTYSANSFESGHQLVFNESADIYIKKNNGQIVQLPQWNRLSPIADHYFRATLDFDGVFTEYAYPKNSAPNQSWFTIQ 285 (462)
Q Consensus 206 W~sg~~~~~~~~~~~~~~~~~~g~l~~~~~n~~~~~~~~~~~~~~~~~~~~r~~Ld~dG~l~~y~w~~~~~~~~~W~~~~ 285 (462)
||+|+|+|..+.+...+... .-..+.+..+..++++++. ..+...++|++||++|++++|.|.+. .++|.++|
T Consensus 1 wrsG~WnG~~f~g~p~~~~~-~~~~~~fv~~~~e~~~t~~---~~~~s~~~r~~ld~~G~l~~~~w~~~---~~~W~~~~ 73 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMSSN-SLYNYSFVSNNEEVYYTYS---LSNSSVLSRLVLDSDGQLQRYIWNES---TQSWSVFW 73 (110)
T ss_pred CCccccCCeEECCccccccc-ceeEEEEEECCCeEEEEEe---cCCCceEEEEEEeeeeEEEEEEEecC---CCcEEEEE
Confidence 89999998766433333211 1122334455666666665 44667899999999999999999988 78999999
Q ss_pred eecCCCcccccCCCCcccCCCCcccccCCCCCcccCCCCCccCC
Q 039324 286 RLPNNICTSISDEFGSGACGFNSYCLLQNGRPFCECPPGYLFVD 329 (462)
Q Consensus 286 ~~p~~~C~v~~~~~~~g~CG~~giC~~~~~~~~C~C~~GF~~~~ 329 (462)
.+|.++||+ |+.||+||+|+. +..+.|+||+||+|++
T Consensus 74 ~~p~d~Cd~------y~~CG~~g~C~~-~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 74 SAPKDQCDV------YGFCGPNGICNS-NNSPKCSCLPGFEPKN 110 (110)
T ss_pred EecccCCCC------ccccCCccEeCC-CCCCceECCCCcCCCc
Confidence 999999999 999999999986 4578899999999974
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.51 E-value=1.5e-14 Score=111.99 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=50.7
Q ss_pred cccEEEeecccCCCCccccc-CCCChHHHHHHhhcCCCeEEEEec---CCCceeeecccCCcc
Q 039324 357 LYEIRELVDVNWPFGDYERL-EPYDQTECETSCLHDCLCAVAIYN---NARRCWKKRFPLSLG 415 (462)
Q Consensus 357 ~~~f~~l~~~~~p~~~~~~~-~~~s~~~C~~~Cl~nCsC~a~~y~---~g~~C~~~~~~L~~~ 415 (462)
.++|++|++|++|+.+...+ .+.++++||++||+||||+||+|. +|.+|++|+++|+|.
T Consensus 4 ~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d~ 66 (66)
T PF08276_consen 4 GDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVDL 66 (66)
T ss_pred CCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeecC
Confidence 36899999999999866544 568999999999999999999997 234899999999873
No 6
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.46 E-value=1.4e-13 Score=110.97 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=61.0
Q ss_pred cccEEEeecccCCCCcccccCCCChHHHHHHhhcCCCeEEEEecC--CCceeeecccCCcceeecCCCCCeEEEEEee
Q 039324 357 LYEIRELVDVNWPFGDYERLEPYDQTECETSCLHDCLCAVAIYNN--ARRCWKKRFPLSLGAYDNAGTGFTKALIKVR 432 (462)
Q Consensus 357 ~~~f~~l~~~~~p~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~--g~~C~~~~~~L~~~~~~~~~~~~~~~~iKv~ 432 (462)
.++|++++++++|+..+.. ...++++|+++||+||+|+||+|.. + +|++|..++.+.+... ..+.++||||+
T Consensus 11 ~~~f~~~~~~~~~~~~~~~-~~~s~~~C~~~Cl~nCsC~a~~~~~~~~-~C~~~~~~~~~~~~~~--~~~~~~yiKv~ 84 (84)
T cd01098 11 TDGFLKLPDVKLPDNASAI-TAISLEECREACLSNCSCTAYAYNNGSG-GCLLWNGLLNNLRSLS--SGGGTLYLRLA 84 (84)
T ss_pred CCEEEEeCCeeCCCchhhh-ccCCHHHHHHHHhcCCCcceeeecCCCC-eEEEEeceecceEeec--CCCcEEEEEeC
Confidence 4689999999999876654 6689999999999999999999973 5 8999999998877644 44588999985
No 7
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.29 E-value=4.3e-12 Score=101.76 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=56.8
Q ss_pred cEEEeecccCCCCcccccCCCChHHHHHHhhc---CCCeEEEEecC-CCceeeecccC-CcceeecCCCCCeEEEEEe
Q 039324 359 EIRELVDVNWPFGDYERLEPYDQTECETSCLH---DCLCAVAIYNN-ARRCWKKRFPL-SLGAYDNAGTGFTKALIKV 431 (462)
Q Consensus 359 ~f~~l~~~~~p~~~~~~~~~~s~~~C~~~Cl~---nCsC~a~~y~~-g~~C~~~~~~L-~~~~~~~~~~~~~~~~iKv 431 (462)
.|+++.+|+.|+... .++++|+++|++ ||||.||+|.. +.+|++|.++| ++.++.. +++.++|||.
T Consensus 10 ~fl~~~~~klpd~~~-----~s~~eC~~~Cl~~~~nCsC~Aya~~~~~~gC~~W~~~l~~d~~~~~--~~g~~Ly~r~ 80 (80)
T cd00129 10 TTLIKIALKIKTTKA-----NTADECANRCEKNGLPFSCKAFVFAKARKQCLWFPFNSMSGVRKEF--SHGFDLYENK 80 (80)
T ss_pred eEEEeecccCCcccc-----cCHHHHHHHHhcCCCCCCceeeeccCCCCCeEEecCcchhhHHhcc--CCCceeEeEC
Confidence 699999999997743 689999999999 99999999962 23899999999 9988776 6679999984
No 8
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.66 E-value=7.9e-08 Score=75.70 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=55.8
Q ss_pred ccEEEeecccCCCCcccccCCCChHHHHHHhhc-CCCeEEEEec--CCCceeeec-ccCCcceeecCCCCCeEEEEEe
Q 039324 358 YEIRELVDVNWPFGDYERLEPYDQTECETSCLH-DCLCAVAIYN--NARRCWKKR-FPLSLGAYDNAGTGFTKALIKV 431 (462)
Q Consensus 358 ~~f~~l~~~~~p~~~~~~~~~~s~~~C~~~Cl~-nCsC~a~~y~--~g~~C~~~~-~~L~~~~~~~~~~~~~~~~iKv 431 (462)
..|+.++++.+++.........++++|++.|++ +|+|.|+.|. ++ .|++|. .++.+.+... ..+.++|.|.
T Consensus 4 ~~f~~~~~~~l~~~~~~~~~~~s~~~C~~~C~~~~~~C~s~~y~~~~~-~C~l~~~~~~~~~~~~~--~~~~~~y~~~ 78 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIVISVASLEECASKCLNSNCSCRSFTYNNGTK-GCLLWSESSLGDARLFP--SGGVDLYEKI 78 (78)
T ss_pred ceeEEecCccCCCCcceeEcCCCHHHHHHHhCCCCCceEEEEEcCCCC-EEEEeeCCccccceecc--cCCceeEEeC
Confidence 469999999998554433346799999999999 9999999997 45 899999 7787777444 5557778763
No 9
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.59 E-value=2.8e-07 Score=78.96 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=61.8
Q ss_pred EEEeCCe-eEEECCC-CcEEEecCCCCc---cceEEEecCCCeEEEecCCCCceeeeccCCCccccCCCceeeccceeee
Q 039324 94 LELTATG-LQLKDPG-GQAIWDEKPNKI---VSDAATLDTGNFVLIASGNNSDYAWQSFKSPTDTILPTQILDLGSVLVS 168 (462)
Q Consensus 94 l~l~~~G-LvL~d~~-~~~vWst~~~~~---~~~a~LldsGNLVL~~~~~~~~~lWQSFD~PTDTLLPGqkL~~~~~L~S 168 (462)
+.++.|| ||+++.. +.++|++++... ...+.|+++|||||++. .+.++|+|= |-
T Consensus 24 ~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~--~g~~vW~S~-----t~-------------- 82 (114)
T smart00108 24 LIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDG--DGRVVWSSN-----TT-------------- 82 (114)
T ss_pred cCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeC--CCCEEEEec-----cc--------------
Confidence 4556899 9999764 479999998532 35788999999999998 778999971 10
Q ss_pred ccCCCCCCCccEEEEEeCC-ceEEeeccCCCCCCccceEecC
Q 039324 169 RLTETNFSKGRFELHFSNG-SLLLIPVAWPTPFQYKSYYTSD 209 (462)
Q Consensus 169 ~~s~~dps~G~ysl~l~~~-~~~l~~~~~~~~~~~~~YW~sg 209 (462)
...+.|.+.|+++ +++||.. ...+.|++.
T Consensus 83 ------~~~~~~~~~L~ddGnlvl~~~------~~~~~W~Sf 112 (114)
T smart00108 83 ------GANGNYVLVLLDDGNLVIYDS------DGNFLWQSF 112 (114)
T ss_pred ------CCCCceEEEEeCCCCEEEECC------CCCEEeCCC
Confidence 1346789999988 8999852 235788763
No 10
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.56 E-value=3.1e-07 Score=78.97 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=62.1
Q ss_pred EEEeC-Ce-eEEECCC-CcEEEecCCCC---ccceEEEecCCCeEEEecCCCCceeeeccCCCccccCCCceeeccceee
Q 039324 94 LELTA-TG-LQLKDPG-GQAIWDEKPNK---IVSDAATLDTGNFVLIASGNNSDYAWQSFKSPTDTILPTQILDLGSVLV 167 (462)
Q Consensus 94 l~l~~-~G-LvL~d~~-~~~vWst~~~~---~~~~a~LldsGNLVL~~~~~~~~~lWQSFD~PTDTLLPGqkL~~~~~L~ 167 (462)
+..+. +| |++++.. ++++|++++.. ....++|+++|||||++. ++.++|+|=-.
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~--~g~~vW~S~~~------------------ 83 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDG--SGTVVWSSNTT------------------ 83 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcC--CCcEEEEeccc------------------
Confidence 34455 99 9998754 47999999753 256789999999999998 77899997210
Q ss_pred eccCCCCCCCccEEEEEeCC-ceEEeeccCCCCCCccceEecCC
Q 039324 168 SRLTETNFSKGRFELHFSNG-SLLLIPVAWPTPFQYKSYYTSDT 210 (462)
Q Consensus 168 S~~s~~dps~G~ysl~l~~~-~~~l~~~~~~~~~~~~~YW~sg~ 210 (462)
...+.+.+.|+++ +++||.. ...+.|++..
T Consensus 84 -------~~~~~~~~~L~ddGnlvl~~~------~~~~~W~Sf~ 114 (116)
T cd00028 84 -------RVNGNYVLVLLDDGNLVLYDS------DGNFLWQSFD 114 (116)
T ss_pred -------CCCCceEEEEeCCCCEEEECC------CCCEEEcCCC
Confidence 0246789999888 8999862 2467888753
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.16 E-value=2e-05 Score=67.62 Aligned_cols=99 Identities=24% Similarity=0.441 Sum_probs=67.4
Q ss_pred CCeEEeCCCeEEEEEEecCCCCCceEEEEEEeecCCCcEEEEc-cCCCCCcccCCCcEEEEeCCe-eEEECCCCcEEEec
Q 039324 37 NSSWISPSRDFAFGFRQLNNNSDLFLLAIWFNKIPERTIIWHA-NEDNHPVLAPRGSTLELTATG-LQLKDPGGQAIWDE 114 (462)
Q Consensus 37 ~~~lvS~~g~F~lGF~~~~~~~~~~~l~Iw~~~~~~~tvVW~A-Nr~~~P~~v~~~~~l~l~~~G-LvL~d~~~~~vWst 114 (462)
++.+.+.+|.+.|-|.. +++ |.| |.. ..++||.. +... . ....+.+.|.++| |||+|..+.++|++
T Consensus 11 ~~p~~~~s~~~~L~l~~-dGn-----Lvl-~~~--~~~~iWss~~t~~-~--~~~~~~~~L~~~GNlvl~d~~~~~lW~S 78 (114)
T PF01453_consen 11 NSPLTSSSGNYTLILQS-DGN-----LVL-YDS--NGSVIWSSNNTSG-R--GNSGCYLVLQDDGNLVLYDSSGNVLWQS 78 (114)
T ss_dssp TEEEEECETTEEEEEET-TSE-----EEE-EET--TTEEEEE--S-TT-S--S-SSEEEEEETTSEEEEEETTSEEEEES
T ss_pred ccccccccccccceECC-CCe-----EEE-EcC--CCCEEEEecccCC-c--cccCeEEEEeCCCCEEEEeecceEEEee
Confidence 35566656889999986 343 333 432 35779999 5454 3 2267899999999 99999888999999
Q ss_pred CCCCccceEEEec--CCCeEEEecCCCCceeeeccCCC
Q 039324 115 KPNKIVSDAATLD--TGNFVLIASGNNSDYAWQSFKSP 150 (462)
Q Consensus 115 ~~~~~~~~a~Lld--sGNLVL~~~~~~~~~lWQSFD~P 150 (462)
......+.+.+++ .||++ +.. ...+.|.|=+.|
T Consensus 79 f~~ptdt~L~~q~l~~~~~~-~~~--~~~~sw~s~~dp 113 (114)
T PF01453_consen 79 FDYPTDTLLPGQKLGDGNVT-GKN--DSLTSWSSNTDP 113 (114)
T ss_dssp TTSSS-EEEEEET--TSEEE-EES--TSSEEEESS---
T ss_pred cCCCccEEEeccCcccCCCc-ccc--ceEEeECCCCCC
Confidence 5433356777887 89998 655 567899986666
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.81 E-value=2e-05 Score=61.94 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=38.9
Q ss_pred EeecccCCCCcccccCCCChHHHHHHhhcCCCeEEEEec--CCCceeeeccc
Q 039324 362 ELVDVNWPFGDYERLEPYDQTECETSCLHDCLCAVAIYN--NARRCWKKRFP 411 (462)
Q Consensus 362 ~l~~~~~p~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~--~g~~C~~~~~~ 411 (462)
.+++++|+..+.......+.++|++.|+.+|+|.||.|. .+ .|++|...
T Consensus 8 ~~~~~~~~g~d~~~~~~~s~~~Cq~~C~~~~~C~afT~~~~~~-~C~lk~~~ 58 (73)
T cd01100 8 QGSNVDFRGGDLSTVFASSAEQCQAACTADPGCLAFTYNTKSK-KCFLKSSE 58 (73)
T ss_pred ccCCCccccCCcceeecCCHHHHHHHcCCCCCceEEEEECCCC-eEEcccCC
Confidence 346778887666544456899999999999999999997 35 89998653
No 13
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=94.44 E-value=0.05 Score=43.48 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=39.3
Q ss_pred eecccCCCCcccccCCCChHHHHHHhhcCCCeEEEEecC-CC---ceeeecc
Q 039324 363 LVDVNWPFGDYERLEPYDQTECETSCLHDCLCAVAIYNN-AR---RCWKKRF 410 (462)
Q Consensus 363 l~~~~~p~~~~~~~~~~s~~~C~~~Cl~nCsC~a~~y~~-g~---~C~~~~~ 410 (462)
.++++|+..+.......+.++|++.|..+=.|.+|.|.. .. .|+++..
T Consensus 6 ~~~~df~G~Dl~~~~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 6 YKNVDFRGSDINTVYVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred ccCccccCceeeeeecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 457888888877666789999999999999999999962 22 6998854
No 14
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=93.81 E-value=0.055 Score=38.65 Aligned_cols=42 Identities=29% Similarity=0.664 Sum_probs=17.6
Q ss_pred cCCCCcccc--cCCCChHHHHHHhhcCCCeEEEEecC------CCceeee
Q 039324 367 NWPFGDYER--LEPYDQTECETSCLHDCLCAVAIYNN------ARRCWKK 408 (462)
Q Consensus 367 ~~p~~~~~~--~~~~s~~~C~~~Cl~nCsC~a~~y~~------g~~C~~~ 408 (462)
+||..++.. ....+.++|.++|..+=.|.++.|.. ...|++|
T Consensus 2 d~~G~dl~~~~~~~~s~~~C~~~C~~~~~C~~~~~~~~~~~~~~~~C~LK 51 (51)
T PF14295_consen 2 DYPGGDLRSFPVTASSPEECQAACAADPGCQAFTFNPPGCPSSSGRCYLK 51 (51)
T ss_dssp ----------------HHHHHHHHHTSTT--EEEEETTEE----------
T ss_pred cccccccccccccCCCHHHHHHHccCCCCCCEEEEECCCcccccccccCC
Confidence 344444433 24568999999999999999999963 1268764
No 15
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=92.74 E-value=0.11 Score=40.45 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=39.1
Q ss_pred cEEEeecccCCCCcccccCCCChHHHHHHhhcCCC-eEEEEec--CCCceeeeccc
Q 039324 359 EIRELVDVNWPFGDYERLEPYDQTECETSCLHDCL-CAVAIYN--NARRCWKKRFP 411 (462)
Q Consensus 359 ~f~~l~~~~~p~~~~~~~~~~s~~~C~~~Cl~nCs-C~a~~y~--~g~~C~~~~~~ 411 (462)
.|..+++..+...........++++|.+.|+++=. |.++.|. .+ .|.+....
T Consensus 3 ~f~~~~~~~l~~~~~~~~~v~s~~~C~~~C~~~~~~C~s~~y~~~~~-~C~L~~~~ 57 (79)
T PF00024_consen 3 AFERIPGYRLSGHSIKEINVPSLEECAQLCLNEPRRCKSFNYDPSSK-TCYLSSSD 57 (79)
T ss_dssp TEEEEEEEEEESCEEEEEEESSHHHHHHHHHHSTT-ESEEEEETTTT-EEEEECSS
T ss_pred CeEEECCEEEeCCcceEEcCCCHHHHHhhcCcCcccCCeEEEECCCC-EEEEcCCC
Confidence 36777777766544333334599999999999999 9999997 35 89987543
No 16
>smart00605 CW CW domain.
Probab=87.07 E-value=4.5 Score=33.05 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=38.8
Q ss_pred CCCChHHHHHHhhcCCCeEEEEecC-CCceeeecc-cCCcceeecCCCCCeEEEEEeeC
Q 039324 377 EPYDQTECETSCLHDCLCAVAIYNN-ARRCWKKRF-PLSLGAYDNAGTGFTKALIKVRK 433 (462)
Q Consensus 377 ~~~s~~~C~~~Cl~nCsC~a~~y~~-g~~C~~~~~-~L~~~~~~~~~~~~~~~~iKv~~ 433 (462)
...+-++|...|..+..|..+.+.+ . .|.+... .+...++... ..+..+=+|+..
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~~~~-~C~~f~~~~~~~v~~~~~-~~~~~VAfK~~~ 76 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGNSSE-TCYLFSYGTVLTVKKLSS-SSGKKVAFKVST 76 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecCCCC-ceEEEEcCCeEEEEEccC-CCCcEEEEEEeC
Confidence 3567899999999999999887764 5 8987543 4555555431 244567788764
No 17
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=86.63 E-value=3.4 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.593 Sum_probs=27.7
Q ss_pred CCCChHHHHHHhhcCCCeEEEEecCCCceeeec
Q 039324 377 EPYDQTECETSCLHDCLCAVAIYNNARRCWKKR 409 (462)
Q Consensus 377 ~~~s~~~C~~~Cl~nCsC~a~~y~~g~~C~~~~ 409 (462)
...+-++|-+.|..+=.|.++.++.+ .|++..
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~~~-~C~~y~ 49 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFDSG-KCYLYN 49 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeCCC-CEEEEE
Confidence 45678999999999999999999866 899764
No 18
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=84.10 E-value=0.48 Score=32.83 Aligned_cols=33 Identities=36% Similarity=0.899 Sum_probs=25.1
Q ss_pred CCcccccCCCCcccCCCCcccccCCCCCcccCCCCCcc
Q 039324 290 NICTSISDEFGSGACGFNSYCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 290 ~~C~v~~~~~~~g~CG~~giC~~~~~~~~C~C~~GF~~ 327 (462)
|+|.. +...|..++.|......-.|.|++||+.
T Consensus 3 dEC~~-----~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 3 DECAE-----GPHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp STTTT-----TSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred cccCC-----CCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 56776 2568999999975333567999999984
No 19
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=83.66 E-value=3.2 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.462 Sum_probs=26.4
Q ss_pred CCChHHHHHHhhc--CCCeEEEEec--CCCceeeecc
Q 039324 378 PYDQTECETSCLH--DCLCAVAIYN--NARRCWKKRF 410 (462)
Q Consensus 378 ~~s~~~C~~~Cl~--nCsC~a~~y~--~g~~C~~~~~ 410 (462)
..++++|.++|++ +=.|.++.|. .+ .|.+-..
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~~~-~C~L~~~ 59 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYKSK-ECILSDE 59 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcCCC-EEEEeCC
Confidence 4789999999999 7889999986 45 8987543
No 20
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=82.16 E-value=1.2 Score=28.43 Aligned_cols=27 Identities=37% Similarity=0.794 Sum_probs=20.9
Q ss_pred cccCCCCcccccCCCCCcccCCCCCcc
Q 039324 301 SGACGFNSYCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 301 ~g~CG~~giC~~~~~~~~C~C~~GF~~ 327 (462)
...|..++.|........|.|++||..
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 467888899976334678999999965
No 21
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=76.81 E-value=2.3 Score=28.04 Aligned_cols=26 Identities=38% Similarity=0.903 Sum_probs=19.5
Q ss_pred cccCCCCcccccCCCCCcccCCCCCc
Q 039324 301 SGACGFNSYCLLQNGRPFCECPPGYL 326 (462)
Q Consensus 301 ~g~CG~~giC~~~~~~~~C~C~~GF~ 326 (462)
...|...+.|........|.|++||.
T Consensus 8 ~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 8 GNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CCCcCCCCEeECCCCCeEeECCCCCc
Confidence 46788888997533356799999996
No 22
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=75.16 E-value=0.86 Score=30.66 Aligned_cols=27 Identities=37% Similarity=0.769 Sum_probs=19.5
Q ss_pred cccCCCCcccccCCCCCcccCCCCCcc
Q 039324 301 SGACGFNSYCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 301 ~g~CG~~giC~~~~~~~~C~C~~GF~~ 327 (462)
.+-|.++..|........|.|.+||.-
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 678999999987444677999999853
No 23
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=71.83 E-value=3.6 Score=26.61 Aligned_cols=27 Identities=33% Similarity=0.764 Sum_probs=19.3
Q ss_pred cccCCCCcccccCCCCCcccCCCCCcc
Q 039324 301 SGACGFNSYCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 301 ~g~CG~~giC~~~~~~~~C~C~~GF~~ 327 (462)
...|...+.|........|.|++||.-
T Consensus 8 ~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 8 GNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred CCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 357877888975333567999999854
No 24
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=64.06 E-value=1.6 Score=28.35 Aligned_cols=25 Identities=40% Similarity=0.933 Sum_probs=19.3
Q ss_pred ccCCCCcccccCC-CCCcccCCCCCc
Q 039324 302 GACGFNSYCLLQN-GRPFCECPPGYL 326 (462)
Q Consensus 302 g~CG~~giC~~~~-~~~~C~C~~GF~ 326 (462)
..|...|.|.... ....|.|++||.
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCc
Confidence 4788889997544 356899999985
No 25
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=63.85 E-value=6.5 Score=28.31 Aligned_cols=32 Identities=41% Similarity=0.864 Sum_probs=26.2
Q ss_pred ecCCCcccccCCCCcccCCCCcccccCCCCCcccCCCCCccC
Q 039324 287 LPNNICTSISDEFGSGACGFNSYCLLQNGRPFCECPPGYLFV 328 (462)
Q Consensus 287 ~p~~~C~v~~~~~~~g~CG~~giC~~~~~~~~C~C~~GF~~~ 328 (462)
.|.+.|.. ..-|-.+++|.. ..|.|++||.+.
T Consensus 17 ~~g~~C~~------~~qC~~~s~C~~----g~C~C~~g~~~~ 48 (52)
T PF01683_consen 17 QPGESCES------DEQCIGGSVCVN----GRCQCPPGYVEV 48 (52)
T ss_pred CCCCCCCC------cCCCCCcCEEcC----CEeECCCCCEec
Confidence 36678999 889999999953 479999999774
No 26
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=59.96 E-value=2.2 Score=22.13 Aligned_cols=10 Identities=50% Similarity=1.394 Sum_probs=6.9
Q ss_pred cccCCCCCcc
Q 039324 318 FCECPPGYLF 327 (462)
Q Consensus 318 ~C~C~~GF~~ 327 (462)
.|.|++||.-
T Consensus 1 ~C~C~~G~~G 10 (13)
T PF12661_consen 1 TCQCPPGWTG 10 (13)
T ss_dssp EEEE-TTEET
T ss_pred CccCcCCCcC
Confidence 4899999853
No 27
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=56.62 E-value=5.2 Score=24.41 Aligned_cols=11 Identities=55% Similarity=1.512 Sum_probs=9.4
Q ss_pred cccCCCCCccC
Q 039324 318 FCECPPGYLFV 328 (462)
Q Consensus 318 ~C~C~~GF~~~ 328 (462)
.|+|++||+..
T Consensus 3 ~C~C~~Gy~l~ 13 (24)
T PF12662_consen 3 TCSCPPGYQLS 13 (24)
T ss_pred EeeCCCCCcCC
Confidence 59999999873
No 28
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=55.97 E-value=8.4 Score=25.15 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=19.0
Q ss_pred ccCCCCcccccCCCCCcccCCCCCcc
Q 039324 302 GACGFNSYCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 302 g~CG~~giC~~~~~~~~C~C~~GF~~ 327 (462)
.+|...|.|.. ....|.|.+||.-
T Consensus 6 ~~C~~~G~C~~--~~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVS--PCGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeC--CCCEEECCCCCcC
Confidence 57999999974 2468999999854
No 29
>smart00181 EGF Epidermal growth factor-like domain.
Probab=53.87 E-value=12 Score=24.03 Aligned_cols=25 Identities=40% Similarity=0.959 Sum_probs=18.2
Q ss_pred ccCCCCcccccCCCCCcccCCCCCcc
Q 039324 302 GACGFNSYCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 302 g~CG~~giC~~~~~~~~C~C~~GF~~ 327 (462)
..|... .|........|.|++||+.
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 457666 8875334678999999965
No 30
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=48.68 E-value=11 Score=25.06 Aligned_cols=18 Identities=39% Similarity=0.868 Sum_probs=12.4
Q ss_pred ccccCCCCCcccCCCCCcc
Q 039324 309 YCLLQNGRPFCECPPGYLF 327 (462)
Q Consensus 309 iC~~~~~~~~C~C~~GF~~ 327 (462)
.|+. +...+|.||.||-.
T Consensus 11 ~CDp-n~~~~C~CPeGyIl 28 (34)
T PF09064_consen 11 DCDP-NSPGQCFCPEGYIL 28 (34)
T ss_pred ccCC-CCCCceeCCCceEe
Confidence 4543 33458999999965
No 31
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=44.00 E-value=61 Score=30.11 Aligned_cols=74 Identities=16% Similarity=0.382 Sum_probs=43.1
Q ss_pred CCCcEEEEccC----CCCCc--ccCCCcEEEE-eCCe-eEEECC-CCcEEEecCCCCcc--------ceEEE-ecCCCeE
Q 039324 71 PERTIIWHANE----DNHPV--LAPRGSTLEL-TATG-LQLKDP-GGQAIWDEKPNKIV--------SDAAT-LDTGNFV 132 (462)
Q Consensus 71 ~~~tvVW~ANr----~~~P~--~v~~~~~l~l-~~~G-LvL~d~-~~~~vWst~~~~~~--------~~a~L-ldsGNLV 132 (462)
.....+|..+- .. ++ .+..+..+.+ +.+| |+..|. +|+.+|+....... ..+.+ ..+|-|+
T Consensus 11 ~tG~~~W~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~ 89 (238)
T PF13360_consen 11 RTGKELWSYDLGPGIGG-PVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLY 89 (238)
T ss_dssp TTTEEEEEEECSSSCSS-EEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEE
T ss_pred CCCCEEEEEECCCCCCC-ccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeE
Confidence 35677888753 22 32 1223344444 4788 998886 89999998753211 11222 2344566
Q ss_pred EEecCCCCceeeec
Q 039324 133 LIASGNNSDYAWQS 146 (462)
Q Consensus 133 L~~~~~~~~~lWQS 146 (462)
..|. .+++++|+.
T Consensus 90 ~~d~-~tG~~~W~~ 102 (238)
T PF13360_consen 90 ALDA-KTGKVLWSI 102 (238)
T ss_dssp EEET-TTSCEEEEE
T ss_pred eccc-CCcceeeee
Confidence 6663 278899995
No 32
>PHA02887 EGF-like protein; Provisional
Probab=38.05 E-value=39 Score=29.02 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=23.4
Q ss_pred cCCCcccccCCCCcccCCCCcccccCCC--CCcccCCCCCc
Q 039324 288 PNNICTSISDEFGSGACGFNSYCLLQNG--RPFCECPPGYL 326 (462)
Q Consensus 288 p~~~C~v~~~~~~~g~CG~~giC~~~~~--~~~C~C~~GF~ 326 (462)
--++|.-. . .++|= +|.|.+-.. .+.|.|++||.
T Consensus 82 hf~pC~~e--y--k~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 82 FFEKCKND--F--NDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred CccccChH--h--hCEee-CCEEEccccCCCceeECCCCcc
Confidence 34678641 1 56787 799976333 68899999984
No 33
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=35.99 E-value=3.4e+02 Score=24.96 Aligned_cols=75 Identities=16% Similarity=0.330 Sum_probs=46.5
Q ss_pred cCCCcEEEEccCCCCCcc---cC-CCcEEEEeCCe-eEEEC-CCCcEEEec-CCC----C---c------cceEEE-ecC
Q 039324 70 IPERTIIWHANEDNHPVL---AP-RGSTLELTATG-LQLKD-PGGQAIWDE-KPN----K---I------VSDAAT-LDT 128 (462)
Q Consensus 70 ~~~~tvVW~ANr~~~P~~---v~-~~~~l~l~~~G-LvL~d-~~~~~vWst-~~~----~---~------~~~a~L-lds 128 (462)
+...+++|...... ++. +. .+..+..+.+| |...| .+|.++|.. ... . . ...+.+ ..+
T Consensus 53 ~~tG~~~W~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 53 AKTGKVLWRFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp TTTSEEEEEEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred CCCCCEEEEeeccc-cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc
Confidence 45678999988766 531 11 33334555778 88777 689999994 211 1 0 011222 348
Q ss_pred CCeEEEecCCCCceeeec
Q 039324 129 GNFVLIASGNNSDYAWQS 146 (462)
Q Consensus 129 GNLVL~~~~~~~~~lWQS 146 (462)
|.|+..|.. +++.+|+=
T Consensus 132 g~l~~~d~~-tG~~~w~~ 148 (238)
T PF13360_consen 132 GKLVALDPK-TGKLLWKY 148 (238)
T ss_dssp SEEEEEETT-TTEEEEEE
T ss_pred CcEEEEecC-CCcEEEEe
Confidence 889888852 67899984
No 34
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=34.66 E-value=45 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.661 Sum_probs=8.2
Q ss_pred eEEECCCCcEEEecC
Q 039324 101 LQLKDPGGQAIWDEK 115 (462)
Q Consensus 101 LvL~d~~~~~vWst~ 115 (462)
++|.|.+|..||.-.
T Consensus 28 ~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 28 FVVKDKEGKEVWRWS 42 (82)
T ss_dssp EEEE-TT--EEEETT
T ss_pred EEEECCCCCEEEEec
Confidence 667777777777653
No 35
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=33.02 E-value=27 Score=29.76 Aligned_cols=30 Identities=17% Similarity=-0.002 Sum_probs=23.3
Q ss_pred ChhhHHHHHHHHHhcccccccccccCCCCc
Q 039324 1 MDSLALSCLILLSLPLLPFLSAANIPLGST 30 (462)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~l~~g~~ 30 (462)
||+|.|+|-|..+.-||..+.+..-..|+.
T Consensus 1 MK~L~li~GLw~Li~CF~~~E~~Rgpr~~~ 30 (113)
T PF15621_consen 1 MKSLYLIFGLWALIGCFTPGESQRGPRRPH 30 (113)
T ss_pred CcceehHHHHHHHHHHccccccccCCCCCC
Confidence 999999999998888987777655554443
No 36
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.85 E-value=2.6e+02 Score=26.31 Aligned_cols=28 Identities=39% Similarity=0.616 Sum_probs=18.5
Q ss_pred cCCCeEEEecCCCCceeeeccCCCccccC-CCc
Q 039324 127 DTGNFVLIASGNNSDYAWQSFKSPTDTIL-PTQ 158 (462)
Q Consensus 127 dsGNLVL~~~~~~~~~lWQSFD~PTDTLL-PGq 158 (462)
|+|.+.=.. ...+|||-..=-||-| |||
T Consensus 140 ~~G~~L~~e----~v~vWqsIkRMpdTYLR~~q 168 (199)
T PF11355_consen 140 DSGQLLKTE----TVKVWQSIKRMPDTYLRPGQ 168 (199)
T ss_pred CCCCEeeEe----eeehhhhhhhChhhccCccc
Confidence 566653222 2479999888778887 444
No 37
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=31.38 E-value=1.4e+02 Score=30.82 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=31.9
Q ss_pred CcEEE-EeCCe-eEEECC-CCcEEEecCCCC---------------cc-----ceEEEecCCCeEEEecCCCCceeee
Q 039324 91 GSTLE-LTATG-LQLKDP-GGQAIWDEKPNK---------------IV-----SDAATLDTGNFVLIASGNNSDYAWQ 145 (462)
Q Consensus 91 ~~~l~-l~~~G-LvL~d~-~~~~vWst~~~~---------------~~-----~~a~LldsGNLVL~~~~~~~~~lWQ 145 (462)
..++. .+.+| |.-+|. +|+++|+..... +. ....-..+|+|+-.|.. +++.+|+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~-tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAE-DGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECC-CCCCccc
Confidence 33444 44567 766664 689999976422 00 01112356777777752 6889996
No 38
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=29.44 E-value=1.6e+02 Score=29.89 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=30.5
Q ss_pred EEeCCe-eEEEC-CCCcEEEecCCCCcc---------ceEEEecCCCeEEEecCCCCceeee
Q 039324 95 ELTATG-LQLKD-PGGQAIWDEKPNKIV---------SDAATLDTGNFVLIASGNNSDYAWQ 145 (462)
Q Consensus 95 ~l~~~G-LvL~d-~~~~~vWst~~~~~~---------~~a~LldsGNLVL~~~~~~~~~lWQ 145 (462)
..+.+| |.-.| .+|+++|+.+..... ...+-..+|+|+-.|.. +++++|+
T Consensus 70 v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~-tG~~~W~ 130 (377)
T TIGR03300 70 AADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAE-DGKELWR 130 (377)
T ss_pred EECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECC-CCcEeee
Confidence 334567 77777 578999987653211 11122356777777752 6789997
No 39
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=29.20 E-value=31 Score=39.02 Aligned_cols=41 Identities=37% Similarity=0.633 Sum_probs=30.9
Q ss_pred CCCcccCCCCcccccCCCCCcccCCCCCccCCCCCCCCCcccCC
Q 039324 298 EFGSGACGFNSYCLLQNGRPFCECPPGYLFVDPTNIFSGCKPNY 341 (462)
Q Consensus 298 ~~~~g~CG~~giC~~~~~~~~C~C~~GF~~~~~~~~s~GC~r~~ 341 (462)
.+++-.||++++|.+...+..|+|..||++.+.+ .-|++-.
T Consensus 738 a~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~---~tCV~i~ 778 (1289)
T KOG1214|consen 738 ATGFHRCGPNSVCINLPGSYRCECRSGYEFADDR---HTCVLIT 778 (1289)
T ss_pred ccCCCCCCCCceeecCCCceeEEEeecceeccCC---cceEEec
Confidence 3368899999999874447789999999997643 4576644
No 40
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=29.11 E-value=16 Score=24.48 Aligned_cols=20 Identities=40% Similarity=1.025 Sum_probs=12.6
Q ss_pred ccccCCCCCcccCCCCCccC
Q 039324 309 YCLLQNGRPFCECPPGYLFV 328 (462)
Q Consensus 309 iC~~~~~~~~C~C~~GF~~~ 328 (462)
+|........|+|++||...
T Consensus 11 ~C~~~~g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 11 ICVNTPGSYRCSCPPGYKLA 30 (36)
T ss_dssp EEEEETTSEEEE-STTEEE-
T ss_pred CCccCCCceEeECCCCCEEC
Confidence 45443336789999999874
No 41
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=25.81 E-value=7.3e+02 Score=25.35 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred EEeCCe-eEEECC-CCcEEEecCCCCc-------cceEEEecCCCeEEEecCCCCceeeec
Q 039324 95 ELTATG-LQLKDP-GGQAIWDEKPNKI-------VSDAATLDTGNFVLIASGNNSDYAWQS 146 (462)
Q Consensus 95 ~l~~~G-LvL~d~-~~~~vWst~~~~~-------~~~a~LldsGNLVL~~~~~~~~~lWQS 146 (462)
..+.+| |.-+|. +|+++|....... ...-...++|.|+..+.. +++.+|+.
T Consensus 261 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~-tG~~~W~~ 320 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTR-GGVELWSQ 320 (394)
T ss_pred EEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECC-CCcEEEcc
Confidence 345678 776664 6889998764321 111223467888777763 57789973
No 42
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=23.31 E-value=2.1e+02 Score=25.37 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=31.9
Q ss_pred EEccCCCCCcccC-CCcEEEEeCCeeEEECCC-CcEEEecCCCC-ccceEEEecCCCeEE
Q 039324 77 WHANEDNHPVLAP-RGSTLELTATGLQLKDPG-GQAIWDEKPNK-IVSDAATLDTGNFVL 133 (462)
Q Consensus 77 W~ANr~~~P~~v~-~~~~l~l~~~GLvL~d~~-~~~vWst~~~~-~~~~a~LldsGNLVL 133 (462)
|+-.|+. +|++- .+..++++..|-.|.|+. |..|==-|..+ ..-.+...+.|-..+
T Consensus 80 ~lV~rG~-~V~i~~~~ggl~i~~~G~AL~~G~~Gd~IrV~N~~S~riV~g~V~~~g~V~V 138 (141)
T PRK12618 80 AIVDRNQ-LVPLAYRLGGLEIRTEGRALSRGGVGDEIRVMNLSSRTTVSGRIAADGSVIV 138 (141)
T ss_pred cEEeCCC-EEEEEEecCCEEEEEEEEEcccCCCCCEEEEEECCCCCEEEEEEecCCEEEE
Confidence 6667776 65433 556677777776666653 44442223322 245667777666554
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.97 E-value=44 Score=27.67 Aligned_cols=12 Identities=50% Similarity=0.346 Sum_probs=8.0
Q ss_pred ChhhHHHHHHHH
Q 039324 1 MDSLALSCLILL 12 (462)
Q Consensus 1 ~~~~~~~~l~~~ 12 (462)
|+|=++|||.||
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 888776665554
No 44
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.29 E-value=1e+02 Score=20.47 Aligned_cols=8 Identities=13% Similarity=0.709 Sum_probs=3.3
Q ss_pred cEEEecCC
Q 039324 109 QAIWDEKP 116 (462)
Q Consensus 109 ~~vWst~~ 116 (462)
+++|+...
T Consensus 2 ~~~W~~~~ 9 (40)
T PF13570_consen 2 KVLWSYDT 9 (40)
T ss_dssp -EEEEEE-
T ss_pred ceeEEEEC
Confidence 45565544
No 45
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.44 E-value=1.5e+02 Score=29.33 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCcEEEEccCCCCCcccC----CCcEEEEeCCe-eEEECCCCcEEEecCCC
Q 039324 72 ERTIIWHANEDNHPVLAP----RGSTLELTATG-LQLKDPGGQAIWDEKPN 117 (462)
Q Consensus 72 ~~tvVW~ANr~~~P~~v~----~~~~l~l~~~G-LvL~d~~~~~vWst~~~ 117 (462)
+.+..|.|.|.. ||-.. ..++..=+-|| |.-.|+.|+.||.-.+.
T Consensus 168 ~~~~~w~~~~~~-PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 168 SSTEFWAATRFG-PIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK 217 (354)
T ss_pred CcceehhhhcCC-ccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence 348899999999 94111 12233334689 88889999999976653
No 46
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.10 E-value=64 Score=24.74 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=15.7
Q ss_pred ChhhHHHHHHHHHhcccccccc
Q 039324 1 MDSLALSCLILLSLPLLPFLSA 22 (462)
Q Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~ 22 (462)
|.+++..+|+.++|+-+.+.++
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQS 22 (71)
T ss_pred CCchhHHHHHHHHHHhhheeee
Confidence 7788888888888875544444
Done!