BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039325
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|B Chain B, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|C Chain C, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|D Chain D, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9
Length = 207
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 17 IYCFESLVYKHKYPQGETCFEK 38
+YCFE ++K K P GE EK
Sbjct: 177 VYCFEGQIFKEKEPDGEVIEEK 198
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 AIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAI 67
AID ++F + + ++H Y + F K G++ TP+ T+GY +D F
Sbjct: 59 AIDSTVDIFTF---YVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGY----IDHAAFLGT 111
Query: 68 YNKEITTLPTRI 79
N + +P +
Sbjct: 112 INPDTNKIPKHL 123
>pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTD|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (aldt) In Ligand-free Form
pdb|2DTE|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTE|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With Nadh
pdb|2DTX|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
pdb|2DTX|B Chain B, Structure Of Thermoplasma Acidophilum Aldohexose
Dehydrogenase (Aldt) In Complex With D-Mannose
Length = 264
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 37 EKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSM 92
+ + LD P++ C + +D P+ E+ + P RI+ I+ W H+ M
Sbjct: 158 KSIALDYAPLLRC--NAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPM 211
>pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
pdb|2ZK7|B Chain B, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma
Acidophilum Aldohexose Dehydrogenase (Aldt)
Length = 257
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 37 EKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSM 92
+ + LD P++ C + +D P+ E+ + P RI+ I+ W H+ M
Sbjct: 165 KSIALDYAPLLRC--NAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPM 218
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 26.2 bits (56), Expect = 5.7, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 AIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAI 67
AID ++F + + ++H Y + F K G++ TP+ T+GY +D F
Sbjct: 59 AIDSTVDIFTF---YVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGY----IDHAAFLGT 111
Query: 68 YNKEITTLPTRI 79
N + +P +
Sbjct: 112 INPDTNKIPKHL 123
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 8 AIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAI 67
AID ++F + + ++H Y + F K G++ TP+ T+GY +D F
Sbjct: 59 AIDSTVDIFTF---YVPHRHVYGEQWIKFMKDGVNATPLPTVNTTGY----IDHAAFLGT 111
Query: 68 YNKEITTLPTRI 79
N + +P +
Sbjct: 112 INPDTNKIPKHL 123
>pdb|3EWI|A Chain A, Structural Analysis Of The C-Terminal Domain Of Murine
Cmp- Sialic Acid Synthetase
pdb|3EWI|B Chain B, Structural Analysis Of The C-Terminal Domain Of Murine
Cmp- Sialic Acid Synthetase
Length = 168
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 9 IDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDC 49
+D W + C++ + Y E C +++GL P C
Sbjct: 88 VDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPADAC 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,025,726
Number of Sequences: 62578
Number of extensions: 119585
Number of successful extensions: 445
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 97
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)