Query 039325
Match_columns 96
No_of_seqs 101 out of 110
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd5_A Thiol:disulfide interch 17.4 39 0.0013 22.3 0.8 37 32-68 110-156 (195)
2 1ich_A TNF-1, tumor necrosis f 12.4 78 0.0027 21.1 1.2 20 28-47 24-43 (112)
3 3c7m_A Thiol:disulfide interch 12.4 56 0.0019 21.2 0.5 38 31-68 116-167 (195)
4 1fad_A Protein (FADD protein); 11.3 2.7E+02 0.0094 16.8 3.5 43 30-90 26-68 (99)
5 3bt4_A Amfpi-1, fungal proteas 9.3 64 0.0022 20.8 -0.1 31 48-78 36-66 (86)
6 2o71_A Death domain-containing 9.3 1.2E+02 0.004 19.9 1.2 23 28-50 34-56 (115)
7 2of5_A Death domain-containing 9.0 1.1E+02 0.0037 20.0 1.0 23 28-50 34-56 (114)
8 1ngr_A P75 low affinity neurot 8.9 1.2E+02 0.0042 18.6 1.1 21 29-49 21-41 (85)
9 2imf_A HCCA isomerase, 2-hydro 8.7 70 0.0024 21.5 -0.1 28 31-58 125-152 (203)
10 3oq9_A Tumor necrosis factor r 8.7 71 0.0024 20.2 -0.1 23 28-50 11-33 (86)
No 1
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=17.38 E-value=39 Score=22.34 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=27.7
Q ss_pred HHhHHHHcCCCcccchhhccCCcccHhhcC----------CCCcccc
Q 039325 32 GETCFEKLGLDLTPIIDCYTSGYGNLFLDK----------PVFPAIY 68 (96)
Q Consensus 32 we~Ca~~~gLd~~~I~~C~ns~~G~~L~~k----------~a~~~~~ 68 (96)
....+++.|||.+.+.+|.+++...+...+ ..||+++
T Consensus 110 l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~v 156 (195)
T 3hd5_A 110 MGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAFA 156 (195)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCceEE
Confidence 557889999999999999988765544332 5788765
No 2
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=12.38 E-value=78 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.5
Q ss_pred CCChHHhHHHHcCCCcccch
Q 039325 28 KYPQGETCFEKLGLDLTPII 47 (96)
Q Consensus 28 ~~~awe~Ca~~~gLd~~~I~ 47 (96)
+...|..++.++||+...|.
T Consensus 24 ~~~~WK~~aRkLGLse~~Id 43 (112)
T 1ich_A 24 PPLRWKEFVKRLGLSDHEID 43 (112)
T ss_dssp CSTTHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHH
Confidence 44679999999999877774
No 3
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=12.37 E-value=56 Score=21.23 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=27.6
Q ss_pred hHHhH----HHHcCCCcccchhhccCCcccHhhcC----------CCCcccc
Q 039325 31 QGETC----FEKLGLDLTPIIDCYTSGYGNLFLDK----------PVFPAIY 68 (96)
Q Consensus 31 awe~C----a~~~gLd~~~I~~C~ns~~G~~L~~k----------~a~~~~~ 68 (96)
..... +++.|||.+.+.+|.+++...+...+ ..+|+++
T Consensus 116 ~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~ 167 (195)
T 3c7m_A 116 DPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVAKIQGVPAYV 167 (195)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHHHHHCSSEEE
T ss_pred HHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHcCCCccCEEE
Confidence 35568 89999999999999988765443222 4678765
No 4
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=11.25 E-value=2.7e+02 Score=16.84 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=27.6
Q ss_pred ChHHhHHHHcCCCcccchhhccCCcccHhhcCCCCcccccccccccchhHHHHHHHHHHhh
Q 039325 30 PQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKM 90 (96)
Q Consensus 30 ~awe~Ca~~~gLd~~~I~~C~ns~~G~~L~~k~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (96)
..|...+.++|++...|...- +++. ..+..++...+..|.++.
T Consensus 26 ~~Wk~Lar~Lg~~~~~I~~I~---------~~~~---------~d~~eq~~~mL~~W~~~~ 68 (99)
T 1fad_A 26 RDWKRLARELKVSEAKMDGIE---------EKYP---------RSLSERVRESLKVWKNAE 68 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH---------HHCS---------SCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHH---------HHCC---------CCHHHHHHHHHHHHHhcc
Confidence 569999999999877774432 2222 124455666667777654
No 5
>3bt4_A Amfpi-1, fungal protease inhibitor-1; silkworm, serine protease inhibitor, HYD inhibitor; 2.10A {Antheraea mylitta}
Probab=9.33 E-value=64 Score=20.78 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=22.8
Q ss_pred hhccCCcccHhhcCCCCcccccccccccchh
Q 039325 48 DCYTSGYGNLFLDKPVFPAIYNKEITTLPTR 78 (96)
Q Consensus 48 ~C~ns~~G~~L~~k~a~~~~~~~~~~~~~~~ 78 (96)
+|.--+----|+.+++.=.+|.||+-.-|..
T Consensus 36 kcaccpacvtll~e~aacktyskelgetpsa 66 (86)
T 3bt4_A 36 KCACCPACVTLLRERAACKTYSKEIGETPSA 66 (86)
T ss_dssp GGGCEEEEEEEECTTCBCCCCBTTTTBCCSE
T ss_pred CcccCHHHHHHccccchHHHHHHHHCCCchH
Confidence 3443344446888999999999999888754
No 6
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=9.30 E-value=1.2e+02 Score=19.86 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=18.8
Q ss_pred CCChHHhHHHHcCCCcccchhhc
Q 039325 28 KYPQGETCFEKLGLDLTPIIDCY 50 (96)
Q Consensus 28 ~~~awe~Ca~~~gLd~~~I~~C~ 50 (96)
....|...+.++|++...|..+-
T Consensus 34 LG~~Wk~LAR~LGlse~dId~I~ 56 (115)
T 2o71_A 34 LGPEWEPMVLSLGLSQTDIYRCK 56 (115)
T ss_dssp CCTTHHHHHHHTTCCHHHHHHHH
T ss_pred HhhhHHHHHHHcCCCHHHHHHHH
Confidence 34679999999999988887664
No 7
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=8.97 E-value=1.1e+02 Score=19.98 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.0
Q ss_pred CCChHHhHHHHcCCCcccchhhc
Q 039325 28 KYPQGETCFEKLGLDLTPIIDCY 50 (96)
Q Consensus 28 ~~~awe~Ca~~~gLd~~~I~~C~ 50 (96)
....|...+.++|++...|..+-
T Consensus 34 lG~~Wk~LAR~LGlse~dId~I~ 56 (114)
T 2of5_A 34 LGPEWEPMVLSLGLSQTDIYRCK 56 (114)
T ss_dssp CCSTHHHHHHTTTCCHHHHHHHH
T ss_pred HhhhHHHHHHHcCCCHHHHHHHH
Confidence 44679999999999988887664
No 8
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=8.89 E-value=1.2e+02 Score=18.60 Aligned_cols=21 Identities=14% Similarity=-0.062 Sum_probs=16.8
Q ss_pred CChHHhHHHHcCCCcccchhh
Q 039325 29 YPQGETCFEKLGLDLTPIIDC 49 (96)
Q Consensus 29 ~~awe~Ca~~~gLd~~~I~~C 49 (96)
...|...++++|++...|..-
T Consensus 21 g~dW~~LA~~Lg~~~~~I~~~ 41 (85)
T 1ngr_A 21 GDTWRHLAGELGYQPEHIDSF 41 (85)
T ss_dssp TTHHHHHHHHTTCCHHHHHHH
T ss_pred cCCHHHHHHHcCCCHHHHHHH
Confidence 467999999999997666444
No 9
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=8.71 E-value=70 Score=21.48 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=22.5
Q ss_pred hHHhHHHHcCCCcccchhhccCCcccHh
Q 039325 31 QGETCFEKLGLDLTPIIDCYTSGYGNLF 58 (96)
Q Consensus 31 awe~Ca~~~gLd~~~I~~C~ns~~G~~L 58 (96)
.....+++.|||.+.+.+|.+++...+.
T Consensus 125 ~L~~~a~~~Gld~~~~~~~~~s~~~~~~ 152 (203)
T 2imf_A 125 LPALVSEKLGWDRSAFEHFLSSNAATER 152 (203)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhcCHHHHHH
Confidence 3567999999999999999988765444
No 10
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=8.69 E-value=71 Score=20.18 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=18.0
Q ss_pred CCChHHhHHHHcCCCcccchhhc
Q 039325 28 KYPQGETCFEKLGLDLTPIIDCY 50 (96)
Q Consensus 28 ~~~awe~Ca~~~gLd~~~I~~C~ 50 (96)
+.+.|..++.++||+...|.+..
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~ 33 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIM 33 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhHHHHHH
Confidence 34679999999999977775554
Done!