Query 039325
Match_columns 96
No_of_seqs 101 out of 110
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 14:24:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039325.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039325hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2az0a1 a.30.8.1 (A:2-71) B2 { 17.2 20 0.0015 20.7 0.8 14 72-85 7-20 (70)
2 d2d8ra1 g.39.1.16 (A:8-93) THA 13.2 29 0.0021 19.6 0.9 23 47-69 59-81 (86)
3 d3cuma1 a.100.1.1 (A:163-296) 11.3 29 0.0021 20.9 0.4 27 35-61 29-55 (134)
4 d1b8pa2 d.162.1.1 (A:159-329) 10.3 33 0.0024 21.2 0.4 40 36-75 13-53 (171)
5 d1e0na_ b.72.1.1 (A:) Hypothet 9.4 29 0.0021 16.8 -0.1 19 55-73 2-20 (27)
6 d2cmda2 d.162.1.1 (A:146-312) 9.2 1.1E+02 0.0082 18.4 2.8 24 36-59 14-37 (167)
7 d1u3em2 d.285.1.1 (M:106-174) 8.5 39 0.0028 19.7 0.2 22 33-54 34-55 (69)
8 d1r8ja2 c.23.1.5 (A:1-135) N-t 8.1 92 0.0067 19.8 2.0 37 52-89 92-128 (135)
9 d1beda_ c.47.1.13 (A:) Disulfi 8.1 29 0.0021 20.7 -0.6 37 32-68 106-152 (181)
10 d1y7ta2 d.162.1.1 (A:154-332) 7.7 64 0.0047 19.8 1.0 23 36-58 14-37 (173)
No 1
>d2az0a1 a.30.8.1 (A:2-71) B2 {Flock house virus, FHV [TaxId: 12287]}
Probab=17.18 E-value=20 Score=20.74 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=11.2
Q ss_pred ccccchhHHHHHHH
Q 039325 72 ITTLPTRIKSAITM 85 (96)
Q Consensus 72 ~~~~~~~~~~~~~~ 85 (96)
|..||.||..|+..
T Consensus 7 iqelpdriq~ave~ 20 (70)
T d2az0a1 7 IQELPDRIQTAVEA 20 (70)
T ss_dssp HHTHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHH
Confidence 67899999988753
No 2
>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.22 E-value=29 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=15.5
Q ss_pred hhhccCCcccHhhcCCCCccccc
Q 039325 47 IDCYTSGYGNLFLDKPVFPAIYN 69 (96)
Q Consensus 47 ~~C~ns~~G~~L~~k~a~~~~~~ 69 (96)
.+|+....+...++..|.|+||+
T Consensus 59 ~~~~~~~~~~~~L~~~AVPtiF~ 81 (86)
T d2d8ra1 59 ASCFDLTGQTRRLKMDAVPTIFD 81 (86)
T ss_dssp STTBSCTTSSCCBCTTCCCSCCC
T ss_pred hhhhcccCCCCEeCCCCccceeC
Confidence 45565444455568899999984
No 3
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.30 E-value=29 Score=20.87 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=20.2
Q ss_pred HHHHcCCCcccchhhccCCcccHhhcC
Q 039325 35 CFEKLGLDLTPIIDCYTSGYGNLFLDK 61 (96)
Q Consensus 35 Ca~~~gLd~~~I~~C~ns~~G~~L~~k 61 (96)
=+++.|+|.+.+.+..+.+-|..=+.+
T Consensus 29 la~~~Gld~~~~~eil~~~~g~s~~~~ 55 (134)
T d3cuma1 29 LGVANGLEAKVLAEIMRRSSGGNWALE 55 (134)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTCCHHHH
T ss_pred HHHHhCCCHHHHHHHHHhcccchhhhh
Confidence 467899999999999877666654433
No 4
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}
Probab=10.28 E-value=33 Score=21.17 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=27.7
Q ss_pred HHHcCCCcccchhhcc-CCcccHhhcCCCCccccccccccc
Q 039325 36 FEKLGLDLTPIIDCYT-SGYGNLFLDKPVFPAIYNKEITTL 75 (96)
Q Consensus 36 a~~~gLd~~~I~~C~n-s~~G~~L~~k~a~~~~~~~~~~~~ 75 (96)
++++|++.+.|...+- |++|+...--.-...+.++.+.++
T Consensus 13 A~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~ 53 (171)
T d1b8pa2 13 AAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDM 53 (171)
T ss_dssp HHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHH
T ss_pred HHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhh
Confidence 6789999999988766 999987755444444445544444
No 5
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.45 E-value=29 Score=16.83 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.2
Q ss_pred ccHhhcCCCCccccccccc
Q 039325 55 GNLFLDKPVFPAIYNKEIT 73 (96)
Q Consensus 55 G~~L~~k~a~~~~~~~~~~ 73 (96)
|=++.|+|.-|-.||.|-.
T Consensus 2 gweiihengrpmyynaq~q 20 (27)
T d1e0na_ 2 GWEIIHENGRPLYYNAEQK 20 (27)
T ss_dssp CEEEEESSSSEEEEETTTT
T ss_pred CceeeecCCceeeeehhhh
Confidence 5567899999999997754
No 6
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=9.24 E-value=1.1e+02 Score=18.39 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=20.1
Q ss_pred HHHcCCCcccchhhccCCcccHhh
Q 039325 36 FEKLGLDLTPIIDCYTSGYGNLFL 59 (96)
Q Consensus 36 a~~~gLd~~~I~~C~ns~~G~~L~ 59 (96)
++++|+|.+.|...+=|++|..-+
T Consensus 14 A~~l~v~~~~V~~~ViGghg~~~~ 37 (167)
T d2cmda2 14 AELKGKQPGEVEVPVIGGHSGVTI 37 (167)
T ss_dssp HHHHTCCGGGCCCCEEECSSTTTE
T ss_pred HHHHCcCHHHeEEEEEEcCCCceE
Confidence 678999999999999999986553
No 7
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=8.51 E-value=39 Score=19.65 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=16.8
Q ss_pred HhHHHHcCCCcccchhhccCCc
Q 039325 33 ETCFEKLGLDLTPIIDCYTSGY 54 (96)
Q Consensus 33 e~Ca~~~gLd~~~I~~C~ns~~ 54 (96)
..=++.+||+...|.+|-.|.+
T Consensus 34 ~kAaelLGL~r~~Vs~CL~Grr 55 (69)
T d1u3em2 34 KCACEELGLTRGKVTDVLKGHR 55 (69)
T ss_dssp HHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHhCcchhHHHHHhccce
Confidence 3345688999999999987653
No 8
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}
Probab=8.09 E-value=92 Score=19.79 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCcccHhhcCCCCcccccccccccchhHHHHHHHHHHh
Q 039325 52 SGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHK 89 (96)
Q Consensus 52 s~~G~~L~~k~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (96)
.+.|+.+.|... --.-.+++.+|+.-|..||+.++|-
T Consensus 92 ~~~~~~~YH~aE-v~l~~~qL~ql~~~ID~AIsrFL~l 128 (135)
T d1r8ja2 92 EPAKEQLYHSAE-LHLGIHQLEQLPYQVDAALAEFLRL 128 (135)
T ss_dssp -CCSSCSSBTTC-EEECTTCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCceeeeeee-EEcCHHHHHHHHHHHHHHHHHHHhh
Confidence 355665555444 2344578899999999999999984
No 9
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}
Probab=8.08 E-value=29 Score=20.67 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=27.8
Q ss_pred HHhHHHHcCCCcccchhhccCCcccHhhcC----------CCCcccc
Q 039325 32 GETCFEKLGLDLTPIIDCYTSGYGNLFLDK----------PVFPAIY 68 (96)
Q Consensus 32 we~Ca~~~gLd~~~I~~C~ns~~G~~L~~k----------~a~~~~~ 68 (96)
...-+...|+|.+.+.+|.+++.-++...+ ..||+++
T Consensus 106 l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~ 152 (181)
T d1beda_ 106 LRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVV 152 (181)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEE
T ss_pred HHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEE
Confidence 456788999999999999998766665433 3677764
No 10
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=7.69 E-value=64 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=18.9
Q ss_pred HHHcCCCcccchhhcc-CCcccHh
Q 039325 36 FEKLGLDLTPIIDCYT-SGYGNLF 58 (96)
Q Consensus 36 a~~~gLd~~~I~~C~n-s~~G~~L 58 (96)
++++|++.+.|..+.= |++|+.-
T Consensus 14 A~~l~v~~~~V~~~iI~GeHG~s~ 37 (173)
T d1y7ta2 14 AKKTGTGVDRIRRMTVWGNHSSTM 37 (173)
T ss_dssp HHHHTCCGGGEECCEEEBCSSTTC
T ss_pred HHHHCcCHHHcEEEEEEEecCccE
Confidence 6789999999998765 9899754
Done!