Query 039326
Match_columns 126
No_of_seqs 100 out of 108
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:26:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1afh_A Maize nonspecific lipid 18.9 1.1E+02 0.0036 20.0 3.3 34 47-85 4-37 (93)
2 1bwo_A NS-LTP1, nonspecific li 14.2 1.2E+02 0.004 19.7 2.5 33 47-85 3-35 (90)
3 2lvf_A 2S albumin; allergen, c 12.9 68 0.0023 22.1 1.1 45 45-89 6-61 (114)
4 2rkn_A DIR1 protein, AT5G48485 12.4 57 0.002 20.5 0.5 21 71-91 25-45 (77)
5 2ebo_A Ebola virus envelope gl 12.2 50 0.0017 21.5 0.2 14 68-81 43-56 (74)
6 1n89_A Lipid transfer protein; 12.0 1.4E+02 0.0047 18.3 2.2 18 72-90 19-36 (67)
7 1siy_A LTP 1, NS-LTP1, nonspec 11.2 1.5E+02 0.005 19.2 2.2 32 47-84 3-34 (91)
8 2lat_A Dolichyl-diphosphooligo 10.0 1.8E+02 0.0061 16.6 2.0 19 9-27 17-35 (37)
9 2ljo_A Non-specific lipid-tran 10.0 1.5E+02 0.0051 19.5 2.0 33 47-85 4-36 (93)
10 3c8l_A FTSZ-like protein of un 9.8 71 0.0024 22.8 0.3 27 72-98 21-48 (122)
No 1
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=18.90 E-value=1.1e+02 Score=20.01 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=22.2
Q ss_pred HhhhhhcccchHHHHHHHHhhccccccChhhhHHHHhhc
Q 039326 47 CLSTLESVHGCVQEVLTAFLSLKVNLIGNACCKAFNEVD 85 (126)
Q Consensus 47 Cwssl~~v~gC~~EI~~s~~~G~~~~Ig~~CC~Ai~~i~ 85 (126)
|=..+.++..|..- ++|....-..+||.+++.+.
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~ 37 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLN 37 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHH
Confidence 44555566667643 34443356779999999985
No 2
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=14.16 E-value=1.2e+02 Score=19.74 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=22.0
Q ss_pred HhhhhhcccchHHHHHHHHhhccccccChhhhHHHHhhc
Q 039326 47 CLSTLESVHGCVQEVLTAFLSLKVNLIGNACCKAFNEVD 85 (126)
Q Consensus 47 Cwssl~~v~gC~~EI~~s~~~G~~~~Ig~~CC~Ai~~i~ 85 (126)
|=+.+.++..|..- ++|.- .-.++||.+++.+.
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~-~Ps~~CC~~lk~l~ 35 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGP-GPSGQCCDGVKNLH 35 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCS-CCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHH-----HcCCC-CCCHHHhHHHHHHH
Confidence 44555566667643 34444 37889999999875
No 3
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=12.89 E-value=68 Score=22.11 Aligned_cols=45 Identities=13% Similarity=0.435 Sum_probs=29.9
Q ss_pred HHHhhhh---hcccchHHHHHHHHhhccccccCh--------hhhHHHHhhccCcc
Q 039326 45 AKCLSTL---ESVHGCVQEVLTAFLSLKVNLIGN--------ACCKAFNEVDTNCW 89 (126)
Q Consensus 45 ~~Cwssl---~~v~gC~~EI~~s~~~G~~~~Ig~--------~CC~Ai~~i~~~Cw 89 (126)
.+|=.-+ .++.+|-.=|.+-...+..+..+. .||+-++.++..|-
T Consensus 6 q~C~~q~q~~~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv~~~Cr 61 (114)
T 2lvf_A 6 EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCR 61 (114)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHSCHHHH
T ss_pred HhhHHHHHHhHhHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHCCcCcc
Confidence 4555433 247788876766666665544443 49999999988884
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=12.36 E-value=57 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=15.6
Q ss_pred cccChhhhHHHHhhccCcccc
Q 039326 71 NLIGNACCKAFNEVDTNCWPK 91 (126)
Q Consensus 71 ~~Ig~~CC~Ai~~i~~~CwP~ 91 (126)
..-.++||.+++..+..|.=.
T Consensus 25 ~~Ps~~CC~~lk~~~~~ClC~ 45 (77)
T 2rkn_A 25 TSPSQPCCTALQHADFACLCG 45 (77)
T ss_dssp CCCCHHHHHHHTTCCHHHHHT
T ss_pred CCCCHHHHHHHHhcCcCCcCc
Confidence 367889999999766666433
No 5
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=12.16 E-value=50 Score=21.47 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=9.7
Q ss_pred ccccccChhhhHHH
Q 039326 68 LKVNLIGNACCKAF 81 (126)
Q Consensus 68 G~~~~Ig~~CC~Ai 81 (126)
|.-.-+||+||-.+
T Consensus 43 gtc~ilgpdc~i~~ 56 (74)
T 2ebo_A 43 GTCHILGPDCAIEP 56 (74)
T ss_dssp CHHHHHGGGGGCCC
T ss_pred CcceecCCccccCH
Confidence 33457999999544
No 6
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=12.05 E-value=1.4e+02 Score=18.34 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=14.3
Q ss_pred ccChhhhHHHHhhccCccc
Q 039326 72 LIGNACCKAFNEVDTNCWP 90 (126)
Q Consensus 72 ~Ig~~CC~Ai~~i~~~CwP 90 (126)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 6889999999975 66643
No 7
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=11.16 E-value=1.5e+02 Score=19.25 Aligned_cols=32 Identities=16% Similarity=0.472 Sum_probs=19.7
Q ss_pred HhhhhhcccchHHHHHHHHhhccccccChhhhHHHHhh
Q 039326 47 CLSTLESVHGCVQEVLTAFLSLKVNLIGNACCKAFNEV 84 (126)
Q Consensus 47 Cwssl~~v~gC~~EI~~s~~~G~~~~Ig~~CC~Ai~~i 84 (126)
|=..+.++..|..- ++|.- .-.++||.+++.+
T Consensus 3 C~~v~~~L~pCl~y-----v~~~~-~Ps~~CC~~lk~l 34 (91)
T 1siy_A 3 CGQVQGNLAQCIGF-----LQKGG-VVPPSCCTGVKNI 34 (91)
T ss_dssp TTTTHHHHHHHHHH-----HTSCS-CCCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHH-----HhCCC-CCcHHHHHHHHHH
Confidence 33344445556543 33433 3788999999987
No 8
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=10.01 E-value=1.8e+02 Score=16.62 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 039326 9 YSFALILTCSVMMAAPGLA 27 (126)
Q Consensus 9 ~~~llv~lc~~~~v~~gla 27 (126)
.+++|+++...+.+++.-.
T Consensus 17 ~~~~LIVlYH~v~~n~~~~ 35 (37)
T 2lat_A 17 SLFLLVVLYHYVAVNNPKK 35 (37)
T ss_dssp HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 4567777888887776544
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=9.96 E-value=1.5e+02 Score=19.53 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=20.5
Q ss_pred HhhhhhcccchHHHHHHHHhhccccccChhhhHHHHhhc
Q 039326 47 CLSTLESVHGCVQEVLTAFLSLKVNLIGNACCKAFNEVD 85 (126)
Q Consensus 47 Cwssl~~v~gC~~EI~~s~~~G~~~~Ig~~CC~Ai~~i~ 85 (126)
|=+-+.++-.|.. +++|.- ...++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~-----Yv~g~~-~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCLT-----YLTGGP-GPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHHH-----HHTTSS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-----HHcCCC-CCCCchhhHHHHHH
Confidence 3344444555553 334543 68999999998875
No 10
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=9.84 E-value=71 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=20.3
Q ss_pred ccChhhhHHHH-hhccCcccccCCCCCC
Q 039326 72 LIGNACCKAFN-EVDTNCWPKVFPFDPF 98 (126)
Q Consensus 72 ~Ig~~CC~Ai~-~i~~~CwP~mFp~~Pf 98 (126)
..-++..+|++ .|.++|.|.+|-..++
T Consensus 21 D~TkAA~RAvrDAI~~nslp~~~~~~g~ 48 (122)
T 3c8l_A 21 EPTIAASRAVRNAIAHNALPGVWEVAGL 48 (122)
T ss_dssp CHHHHHHHHHHHHHTTCCCSSHHHHHTC
T ss_pred cHHHHHHHHHHHHHhhhcchhHHHHCCC
Confidence 55677888887 7889999988754444
Done!