Query 039327
Match_columns 315
No_of_seqs 181 out of 2820
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-35 2.4E-40 287.1 20.9 304 2-315 92-435 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.3E-35 9.3E-40 283.0 20.6 303 3-314 140-458 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.9E-33 1.3E-37 236.0 2.9 302 4-314 126-445 (873)
4 KOG4194 Membrane glycoprotein 100.0 4E-32 8.6E-37 231.0 6.9 302 5-315 80-423 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.2E-30 2.7E-35 224.1 -5.1 297 2-315 54-369 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 9.7E-28 2.1E-32 206.4 -4.2 298 2-313 6-321 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.7E-27 3.7E-32 194.6 -7.8 245 2-265 67-311 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 5.6E-26 1.2E-30 185.8 -3.8 295 3-315 114-535 (565)
9 PLN03210 Resistant to P. syrin 99.9 2E-21 4.3E-26 189.2 22.4 295 2-314 557-899 (1153)
10 PLN03210 Resistant to P. syrin 99.9 1.5E-20 3.3E-25 183.1 20.1 278 19-315 549-876 (1153)
11 PRK15387 E3 ubiquitin-protein 99.8 2.9E-20 6.4E-25 170.0 16.3 253 5-305 203-465 (788)
12 KOG4237 Extracellular matrix p 99.8 2.3E-22 4.9E-27 164.3 -1.0 230 4-240 68-359 (498)
13 PRK15370 E3 ubiquitin-protein 99.8 5.5E-20 1.2E-24 169.0 13.0 250 4-298 179-428 (754)
14 KOG0618 Serine/threonine phosp 99.8 2.6E-22 5.6E-27 179.7 -2.2 281 8-314 183-482 (1081)
15 KOG0618 Serine/threonine phosp 99.8 1.5E-22 3.3E-27 181.1 -3.8 295 4-315 46-459 (1081)
16 PRK15370 E3 ubiquitin-protein 99.8 4.7E-19 1E-23 162.9 11.4 238 29-314 179-421 (754)
17 PRK15387 E3 ubiquitin-protein 99.8 1.2E-18 2.7E-23 159.5 13.9 241 28-315 201-452 (788)
18 cd00116 LRR_RI Leucine-rich re 99.8 3.3E-20 7.1E-25 157.9 1.5 278 7-296 2-318 (319)
19 KOG4237 Extracellular matrix p 99.8 1.1E-20 2.4E-25 154.5 -2.0 263 33-315 51-353 (498)
20 cd00116 LRR_RI Leucine-rich re 99.8 6.5E-20 1.4E-24 156.1 -0.7 271 32-315 2-314 (319)
21 KOG0617 Ras suppressor protein 99.6 3.2E-18 6.9E-23 125.1 -3.8 153 3-167 33-186 (264)
22 KOG0617 Ras suppressor protein 99.6 3.9E-18 8.5E-23 124.6 -4.4 155 103-264 31-186 (264)
23 KOG3207 Beta-tubulin folding c 99.3 2.1E-13 4.5E-18 113.7 0.8 208 1-217 119-340 (505)
24 KOG3207 Beta-tubulin folding c 99.3 1.4E-13 3.1E-18 114.7 -1.3 135 56-191 122-259 (505)
25 KOG1909 Ran GTPase-activating 99.3 2.5E-13 5.5E-18 110.2 -0.1 138 154-297 157-310 (382)
26 KOG1909 Ran GTPase-activating 99.3 1.3E-12 2.8E-17 106.1 2.1 187 76-263 88-310 (382)
27 KOG0532 Leucine-rich repeat (L 99.2 3E-13 6.6E-18 116.3 -4.1 174 80-265 75-248 (722)
28 PF14580 LRR_9: Leucine-rich r 99.2 2.6E-11 5.6E-16 92.1 5.3 129 153-293 18-148 (175)
29 COG4886 Leucine-rich repeat (L 99.2 4.3E-11 9.3E-16 104.9 6.6 195 32-242 97-292 (394)
30 KOG0532 Leucine-rich repeat (L 99.1 1.6E-12 3.5E-17 112.0 -3.3 158 72-240 90-247 (722)
31 KOG1259 Nischarin, modulator o 99.1 1.2E-11 2.6E-16 98.9 1.4 198 23-240 209-412 (490)
32 COG4886 Leucine-rich repeat (L 99.1 8E-11 1.7E-15 103.2 6.6 201 84-306 97-298 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 7.7E-11 1.7E-15 89.5 5.0 126 129-259 19-148 (175)
34 PLN03150 hypothetical protein; 99.1 4.2E-10 9.1E-15 103.5 9.1 107 82-190 420-527 (623)
35 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.5E-15 93.4 1.8 119 175-298 281-412 (490)
36 PLN03150 hypothetical protein; 99.0 1.2E-09 2.7E-14 100.5 8.3 106 131-238 420-526 (623)
37 KOG4658 Apoptotic ATPase [Sign 98.9 5.2E-10 1.1E-14 105.4 4.0 128 2-137 544-676 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 2.2E-09 4.7E-14 67.2 4.2 60 228-297 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 3.6E-09 7.9E-14 66.2 3.8 59 204-262 2-60 (61)
40 KOG2120 SCF ubiquitin ligase, 98.8 1.1E-10 2.3E-15 93.3 -5.2 180 56-240 186-376 (419)
41 KOG2982 Uncharacterized conser 98.8 1.1E-09 2.4E-14 87.6 0.1 211 81-301 46-265 (418)
42 KOG4658 Apoptotic ATPase [Sign 98.8 6.5E-09 1.4E-13 98.2 4.2 205 24-241 519-731 (889)
43 COG5238 RNA1 Ran GTPase-activa 98.7 2.1E-09 4.4E-14 85.1 -1.0 134 56-191 93-255 (388)
44 KOG2120 SCF ubiquitin ligase, 98.7 7E-10 1.5E-14 88.8 -4.2 155 106-261 186-348 (419)
45 KOG0531 Protein phosphatase 1, 98.7 3.8E-09 8.3E-14 93.0 -0.1 104 56-167 96-199 (414)
46 KOG0531 Protein phosphatase 1, 98.6 3.2E-09 6.9E-14 93.5 -1.9 240 3-264 72-318 (414)
47 KOG2982 Uncharacterized conser 98.6 1.8E-08 3.9E-13 80.8 1.6 204 26-233 69-285 (418)
48 KOG1859 Leucine-rich repeat pr 98.5 2.4E-09 5.2E-14 95.4 -6.5 128 155-298 165-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.5 1.4E-09 3E-14 96.9 -8.3 130 79-216 163-292 (1096)
50 KOG4341 F-box protein containi 98.4 7.1E-09 1.5E-13 86.7 -5.8 18 279-296 420-437 (483)
51 KOG4579 Leucine-rich repeat (L 98.3 4.9E-08 1.1E-12 69.4 -2.7 82 80-165 53-134 (177)
52 KOG4579 Leucine-rich repeat (L 98.2 4.9E-08 1.1E-12 69.4 -3.0 131 29-167 28-159 (177)
53 COG5238 RNA1 Ran GTPase-activa 98.2 8.9E-07 1.9E-11 70.5 3.1 205 56-263 31-284 (388)
54 KOG3665 ZYG-1-like serine/thre 98.2 5.9E-07 1.3E-11 83.0 1.6 134 56-193 123-265 (699)
55 KOG4341 F-box protein containi 98.2 2.9E-08 6.2E-13 83.2 -6.4 137 126-262 291-437 (483)
56 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.3E-11 49.0 2.4 40 3-44 1-40 (44)
57 PRK15386 type III secretion pr 98.1 3.1E-05 6.7E-10 66.6 9.4 18 27-44 51-68 (426)
58 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.6E-10 60.6 6.1 106 179-294 43-149 (233)
59 PF12799 LRR_4: Leucine Rich r 98.0 7.5E-06 1.6E-10 46.9 3.1 19 280-298 19-37 (44)
60 KOG3665 ZYG-1-like serine/thre 98.0 4.4E-06 9.5E-11 77.4 2.7 132 28-167 122-263 (699)
61 PF13306 LRR_5: Leucine rich r 97.9 2.9E-05 6.3E-10 56.5 6.5 14 124-137 30-43 (129)
62 KOG1644 U2-associated snRNP A' 97.9 3.9E-05 8.5E-10 58.6 5.9 106 129-238 42-151 (233)
63 PF13306 LRR_5: Leucine rich r 97.8 7.6E-05 1.6E-09 54.3 6.8 105 124-235 7-111 (129)
64 PRK15386 type III secretion pr 97.7 0.00033 7.1E-09 60.4 10.4 137 76-238 48-188 (426)
65 KOG2123 Uncharacterized conser 97.7 1.3E-06 2.9E-11 69.7 -4.9 101 2-111 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.4 7.3E-05 1.6E-09 59.4 2.1 112 173-294 38-152 (260)
67 KOG2123 Uncharacterized conser 97.2 1.4E-05 3.1E-10 64.0 -4.1 100 80-184 19-123 (388)
68 KOG1947 Leucine rich repeat pr 97.2 1.5E-05 3.3E-10 71.8 -4.9 63 78-140 241-306 (482)
69 KOG2739 Leucine-rich acidic nu 97.0 0.00038 8.2E-09 55.5 2.0 108 24-139 39-153 (260)
70 KOG1947 Leucine rich repeat pr 96.9 0.00015 3.3E-09 65.4 -1.5 112 79-190 187-307 (482)
71 PF13504 LRR_7: Leucine rich r 95.4 0.009 2E-07 26.3 1.1 14 29-42 2-15 (17)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.012 2.6E-07 27.9 1.2 17 30-46 2-18 (22)
73 KOG3864 Uncharacterized conser 94.5 0.0043 9.4E-08 47.7 -2.1 82 4-89 102-185 (221)
74 KOG4308 LRR-containing protein 94.4 0.00016 3.6E-09 64.3 -11.5 38 82-119 89-129 (478)
75 KOG4308 LRR-containing protein 94.1 0.00012 2.7E-09 65.1 -12.9 183 5-191 89-303 (478)
76 smart00370 LRR Leucine-rich re 92.9 0.063 1.4E-06 26.5 1.3 19 28-46 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 92.9 0.063 1.4E-06 26.5 1.3 19 28-46 2-20 (26)
78 KOG3864 Uncharacterized conser 92.0 0.017 3.6E-07 44.6 -2.3 86 52-138 98-185 (221)
79 PF13516 LRR_6: Leucine Rich r 88.4 0.15 3.3E-06 24.5 0.1 15 227-241 2-16 (24)
80 smart00364 LRR_BAC Leucine-ric 83.6 0.63 1.4E-05 22.9 0.9 18 28-45 2-19 (26)
81 KOG0473 Leucine-rich repeat pr 78.5 0.051 1.1E-06 43.1 -6.0 86 202-300 41-126 (326)
82 KOG4242 Predicted myosin-I-bin 77.6 23 0.0005 31.7 8.8 15 28-42 165-179 (553)
83 KOG0473 Leucine-rich repeat pr 75.8 0.093 2E-06 41.7 -5.3 94 18-119 32-125 (326)
84 smart00365 LRR_SD22 Leucine-ri 74.4 2.3 5E-05 21.0 1.3 14 3-16 2-15 (26)
85 smart00368 LRR_RI Leucine rich 71.8 2.4 5.3E-05 21.2 1.1 14 285-298 2-15 (28)
86 KOG3763 mRNA export factor TAP 69.1 2 4.4E-05 38.7 0.7 83 25-111 215-307 (585)
87 KOG4242 Predicted myosin-I-bin 68.6 20 0.00043 32.1 6.4 65 228-298 414-481 (553)
88 KOG3763 mRNA export factor TAP 68.6 2.8 6.1E-05 37.8 1.5 36 177-213 217-254 (585)
89 smart00367 LRR_CC Leucine-rich 63.5 4.1 9E-05 19.8 0.9 11 3-13 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-35 Score=287.11 Aligned_cols=304 Identities=33% Similarity=0.429 Sum_probs=198.2
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
+++|+.|++++|.+.+.+|.+.+..+++|++|++++|.+++ +|.. .++ +|++|++ ++|.+.+..|..+.+++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~l~--~L~~L~L-s~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----SIP--NLETLDL-SNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----ccC--CCCEEEC-cCCcccccCChHHhcCC
Confidence 56788888888877777775445577788888888777765 4432 244 7777888 77777777777777788
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 160 (315)
+|++|++++|.+.+.+|..+ +++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|+
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~ 242 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLD 242 (968)
T ss_pred CCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEE
Confidence 88888888887777777764 67777888888777777667777777777777777777776666666655 66777777
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+.+|.+++..|..++.+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 777777666666677777777777777766655555544 3556666666666655555555555555555555555555
Q ss_pred cccccccccCCCCcEEEccCCcccc--------------------------------------ccCCCCccccCCchhhc
Q 039327 241 GEIPQSLSKCSSLEGLYLNNNSLSD--------------------------------------ITMPKNHLEGPIPVEFC 282 (315)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~n~i~~--------------------------------------l~l~~~~l~~~~~~~l~ 282 (315)
+..|..+..+++|+.|++++|.+.. +++.+|.+.+.+|.++.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 4444444455555555554443321 33444455555555555
Q ss_pred ccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 283 QLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 283 ~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
.+++|+.|++++|.+++.+|..+. ++.|+.|++
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 566666666666666656666555 566655543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-35 Score=283.01 Aligned_cols=303 Identities=29% Similarity=0.367 Sum_probs=191.1
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
++|++|++++|.+.+..| ..+.++++|++|++++|.+.+ +|..+.+ ++ +|++|++ ++|.+.+..|..+.++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~--~L~~L~L-~~n~l~~~~p~~l~~l~~ 213 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTN--LT--SLEFLTL-ASNQLVGQIPRELGQMKS 213 (968)
T ss_pred CCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChhhhh--Cc--CCCeeec-cCCCCcCcCChHHcCcCC
Confidence 445555555555554445 345666666666666666554 5554443 34 6666666 666666666666666666
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
|++|++++|.+.+.+|..+ +.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++
T Consensus 214 L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L 291 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDL 291 (968)
T ss_pred ccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEEC
Confidence 6666666666666666654 66677777777777666666666667777777777777666566666554 667777777
Q ss_pred ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 77776666666666777777777777776655555544 46777777777777766666666667777777777777666
Q ss_pred ccccccccCCCCcEEEccCCccc--------------cccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLS--------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH- 306 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~--------------~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~- 306 (315)
.+|..+...++++.+++.+|.+. .+++.+|.+.+.+|..+..+++|+.|++++|.+++.+|..+.
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 66666655556666666555432 245555556555666666666666666666666555555444
Q ss_pred ccccceec
Q 039327 307 PLYIKKVH 314 (315)
Q Consensus 307 ~~~L~~l~ 314 (315)
+++|+.|+
T Consensus 451 l~~L~~L~ 458 (968)
T PLN00113 451 MPSLQMLS 458 (968)
T ss_pred CCCCcEEE
Confidence 55555544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=5.9e-33 Score=235.96 Aligned_cols=302 Identities=24% Similarity=0.206 Sum_probs=227.7
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCc-cccEEEEeccCCCCccccccccccCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPN-FQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
+|+.|+|.+|.|. ++..+.++-+|.|++||||.|.++.+|.. .+|. .++++|++ ..|.++..-...|..+.+|
T Consensus 126 hl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~----sfp~~~ni~~L~L-a~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 126 HLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKP----SFPAKVNIKKLNL-ASNRITTLETGHFDSLNSL 199 (873)
T ss_pred ceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCC----CCCCCCCceEEee-ccccccccccccccccchh
Confidence 4666777777665 34445677788889999998888887665 3444 48999999 9999998888889999999
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS 162 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (315)
.+|.++.|+++ .+|...|+++++|+.|+|..|++.-.--.+|.++++|+.|.+..|.+. .+..+.+..+.+++.|++.
T Consensus 200 ~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 200 LTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred eeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecc
Confidence 99999999998 778877899999999999999987554567888889999999888887 6777777778888888888
Q ss_pred cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327 163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242 (315)
Q Consensus 163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (315)
.|+++.....++-++..|+.|+++.|.+. .+..+.-+.++.|+.|+++.|+++...++.+..++.|++|+++.|.++-.
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 88888666667778888888888888887 44433333588888888888888877777777777777777777776644
Q ss_pred cccccccCCCCcEEEccCCcccc-----------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327 243 IPQSLSKCSSLEGLYLNNNSLSD-----------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305 (315)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~n~i~~-----------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 305 (315)
...++..+.+|+.||++.|.++- +.+-+|++...-..+|.+++.|++||+.+|.|...-|..|
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 44555566666666666664432 4444555554445788888888888888888877777777
Q ss_pred cccccceec
Q 039327 306 HPLYIKKVH 314 (315)
Q Consensus 306 ~~~~L~~l~ 314 (315)
.--.|++|.
T Consensus 437 e~m~Lk~Lv 445 (873)
T KOG4194|consen 437 EPMELKELV 445 (873)
T ss_pred ccchhhhhh
Confidence 722666553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4e-32 Score=230.95 Aligned_cols=302 Identities=23% Similarity=0.236 Sum_probs=228.4
Q ss_pred cceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCe
Q 039327 5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED 84 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 84 (315)
-+.|++++|.+. .+.+..|.++|+|+.+++.+|.++.+|..... .. +++.|++ ..|.+...-.+.++.++.|+.
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~--sg--hl~~L~L-~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHE--SG--HLEKLDL-RHNLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhccccccc--cc--ceeEEee-eccccccccHHHHHhHhhhhh
Confidence 367999999998 44446789999999999999999998876443 44 8999999 999999888888999999999
Q ss_pred EEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC
Q 039327 85 VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN 164 (315)
Q Consensus 85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 164 (315)
||++.|.++ .++..-|..-.++++|+|.+|++++.....|..+.+|..|.++.|.++ .+|...+..+++|+.|++..|
T Consensus 154 lDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 154 LDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence 999999987 555433455578999999999999877788889999999999999998 899888887899999999998
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccc
Q 039327 165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP 244 (315)
Q Consensus 165 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (315)
.|.-.--..|..+++|+.+.+.+|++. .+....|-.+..+++|++..|++...-.+.+..+..|++|+++.|.+....+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec
Confidence 876221234677777777777777776 5555555456666666666666655555555556666666666666655555
Q ss_pred cccccCCCCcEEEccCCcccc--------------------------------------ccCCCCccccCC---chhhcc
Q 039327 245 QSLSKCSSLEGLYLNNNSLSD--------------------------------------ITMPKNHLEGPI---PVEFCQ 283 (315)
Q Consensus 245 ~~~~~~~~L~~L~l~~n~i~~--------------------------------------l~l~~~~l~~~~---~~~l~~ 283 (315)
..+..+++|++|++++|+|+. ++++.|.++..+ ..+|.+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g 390 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG 390 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhcc
Confidence 555556666666666665544 778888877544 355778
Q ss_pred cCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 284 LYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 284 ~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
+++|+.|.+.||++....-..|. +..|+.|+|
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecC
Confidence 89999999999998844444566 888888875
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.2e-30 Score=224.07 Aligned_cols=297 Identities=28% Similarity=0.337 Sum_probs=247.1
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccc--cccccccCCCCccccEEEEeccCCCCccccccccccC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ 79 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 79 (315)
|.+|++|.++.|++.... ..++.+|.|+.+.+..|++.. +|.++++ +. .|+.|++ +.|.+. +.|..+.+.
T Consensus 54 lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R~N~LKnsGiP~diF~--l~--dLt~lDL-ShNqL~-EvP~~LE~A 125 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVRDNNLKNSGIPTDIFR--LK--DLTILDL-SHNQLR-EVPTNLEYA 125 (1255)
T ss_pred HhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhhccccccCCCCchhcc--cc--cceeeec-chhhhh-hcchhhhhh
Confidence 567888889888887333 367788899999999888865 8988876 66 8999999 888887 688888889
Q ss_pred CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327 80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF 159 (315)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 159 (315)
+++-.|++|+|++. .+|..+|.+++-|-.|++++|++. ..|..+..+..|++|.+++|.+. .+.-.-...+.+|+.|
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhh
Confidence 99999999999997 889988899999999999999987 46777888999999999999876 3322222226678888
Q ss_pred EeecCcCC-CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCc
Q 039327 160 NISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238 (315)
Q Consensus 160 ~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 238 (315)
.+++..-+ ..+|..+..+.+|..++++.|++. .+|..++ .+++|+.|++++|.+++.- .....+.+|++|+++.|+
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeee-ccHHHHhhhhhhccccch
Confidence 88887655 467888999999999999999998 9999998 5999999999999998743 344567889999999999
Q ss_pred cccccccccccCCCCcEEEccCCcccc---------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCC
Q 039327 239 FIGEIPQSLSKCSSLEGLYLNNNSLSD---------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303 (315)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~n~i~~---------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 303 (315)
++ .+|.+++.+++|+.|.+.+|++.- +...+|.+. .+|+.+|+|++|+.|.++.|++- .+|+
T Consensus 280 Lt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPe 356 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPE 356 (1255)
T ss_pred hc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echh
Confidence 98 889999999999999998886432 445566665 78999999999999999999987 8999
Q ss_pred Ccc-ccccceecC
Q 039327 304 CFH-PLYIKKVHL 315 (315)
Q Consensus 304 ~~~-~~~L~~l~l 315 (315)
.++ ++-|++||+
T Consensus 357 aIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDL 369 (1255)
T ss_pred hhhhcCCcceeec
Confidence 999 899999875
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=9.7e-28 Score=206.38 Aligned_cols=298 Identities=20% Similarity=0.279 Sum_probs=244.7
Q ss_pred CCccceEEeecCccc-ccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQ-IPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
++-++-+++++|.++ +.+| .....|+.++-|.|.+.++..+|..++. +. +|++|.+ ..|.+. .+-..++.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~~vPeEL~~--lq--kLEHLs~-~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLEQVPEELSR--LQ--KLEHLSM-AHNQLI-SVHGELSDLP 78 (1255)
T ss_pred cceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhhhChHHHHH--Hh--hhhhhhh-hhhhhH-hhhhhhccch
Confidence 566778899999998 5566 5788999999999999999889998776 55 8999999 877776 3455678899
Q ss_pred CCCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327 81 DLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF 159 (315)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 159 (315)
.|+.+++..|++.. -+|..+ -.+..|..|++++|++. ..|..+..-+++..|++++|.+. .+|..++..+..|-.|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCchh-cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 99999999998854 567777 48899999999999987 68888999999999999999998 9999998888889999
Q ss_pred EeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCC-CcccccccCCCCCCEEEcCCCc
Q 039327 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK-GHMFCRNFNLANLRQLQLEDNR 238 (315)
Q Consensus 160 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~ 238 (315)
|++.|++. .+|+..+.+.+|++|.+++|.+. .+.....-.+.+|++|.+++.+-+ ...|.++..+.+|..+|++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 99999998 78888999999999999999887 433222224667788888887654 4577888889999999999999
Q ss_pred cccccccccccCCCCcEEEccCCcccc-------------ccCCCCccccCCchhhcccCCCCEEecccCccC-CCCCCC
Q 039327 239 FIGEIPQSLSKCSSLEGLYLNNNSLSD-------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS-GSLPSC 304 (315)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~n~i~~-------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~ 304 (315)
+. .+|+.+..+++|+.|++++|.|++ ++++.|+++ .+|.+++++++|+.|.+.+|.++ .-+|+.
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 88 889999999999999999998887 667778877 67888888888888888887653 245666
Q ss_pred cc-cccccee
Q 039327 305 FH-PLYIKKV 313 (315)
Q Consensus 305 ~~-~~~L~~l 313 (315)
++ +..|+++
T Consensus 312 IGKL~~Levf 321 (1255)
T KOG0444|consen 312 IGKLIQLEVF 321 (1255)
T ss_pred hhhhhhhHHH
Confidence 66 6666554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.7e-27 Score=194.56 Aligned_cols=245 Identities=24% Similarity=0.297 Sum_probs=160.7
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+..++++++..|.+. ..| .++..+..++.++.+.|.+..+|..+.. .+ .+..++. +.+.+. .+++.+..+..
T Consensus 67 L~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls~lp~~i~s--~~--~l~~l~~-s~n~~~-el~~~i~~~~~ 138 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLSELPEQIGS--LI--SLVKLDC-SSNELK-ELPDSIGRLLD 138 (565)
T ss_pred ccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHhhccHHHhh--hh--hhhhhhc-ccccee-ecCchHHHHhh
Confidence 445566666666665 444 2556666666666666666666666554 44 5666666 555544 45566666666
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
++.++-.+|++. ..|..+ .++.++..+++.+|++....+. .-.|+.|++++...|.++ .+|+.++. +..|..|++
T Consensus 139 l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL 213 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYL 213 (565)
T ss_pred hhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHh
Confidence 666666666665 455554 5666777777777766643333 333777777777777776 77777775 777777777
Q ss_pred ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
..|.+. .+| .|..|..|.+++++.|.+. .+|.....+++++.+||++.|++.+ .|..+..+.+|+.||+++|.++
T Consensus 214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is- 288 (565)
T KOG0472|consen 214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDIS- 288 (565)
T ss_pred hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccc-
Confidence 777776 566 5677777777777777776 6777766677777777777777765 3555556677777777777776
Q ss_pred ccccccccCCCCcEEEccCCcccc
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
..|..++++ +|+.|.+.+|.+++
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHH
Confidence 556667776 67777777775554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=5.6e-26 Score=185.76 Aligned_cols=295 Identities=22% Similarity=0.298 Sum_probs=185.8
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
..+..++++.|.+. ..+ +.+..+-.++.++..+|+++++|.+++. +.++..+++ .++.+....|+ ..+++.|
T Consensus 114 ~~l~~l~~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~slp~~~~~----~~~l~~l~~-~~n~l~~l~~~-~i~m~~L 185 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK-ELP-DSIGRLLDLEDLDATNNQISSLPEDMVN----LSKLSKLDL-EGNKLKALPEN-HIAMKRL 185 (565)
T ss_pred hhhhhhhcccccee-ecC-chHHHHhhhhhhhccccccccCchHHHH----HHHHHHhhc-cccchhhCCHH-HHHHHHH
Confidence 45667777777776 455 3677777777777777777777776543 336667777 66666633333 3336666
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-----------------------CCCcCCCCccEEEcccC
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-----------------------LPIHPHRRLRFLDVSNN 139 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----------------------~~l~~~~~L~~L~l~~~ 139 (315)
++||...|.++ .+|+.+ +.+.+|.-|++.+|++. ..| ...++++++.+|++++|
T Consensus 186 ~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred Hhcccchhhhh-cCChhh-cchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 67776666554 556554 56666666666666554 222 22335566777777777
Q ss_pred cCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhh---------------------
Q 039327 140 NFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERL--------------------- 198 (315)
Q Consensus 140 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~--------------------- 198 (315)
.+. ++|.+++- +.+|++||+++|.++ ..|..++++ +|+.|-+.+|.+. .+...+
T Consensus 263 klk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 263 KLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred ccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCC
Confidence 776 67777665 666777777777776 566667776 6776766666543 100000
Q ss_pred -----------------c---cCCCc--------------------------ccEEEccCCCCC----------------
Q 039327 199 -----------------A---VGCVN--------------------------LEFLALSNNNLK---------------- 216 (315)
Q Consensus 199 -----------------~---~~~~~--------------------------L~~L~l~~n~~~---------------- 216 (315)
+ ....+ .+..++++|++.
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 0 00001 233444444322
Q ss_pred -------CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc-------------ccCCCCccccC
Q 039327 217 -------GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD-------------ITMPKNHLEGP 276 (315)
Q Consensus 217 -------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-------------l~l~~~~l~~~ 276 (315)
+++|..+..++++..|++++|.+. .+|..++....|+.++++.|++.. +-.++++++..
T Consensus 418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred HhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence 223344557788888999888776 778888888889999999987665 22344555533
Q ss_pred CchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 277 IPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 277 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
-+..+.+|.+|..||+.+|.+. .+|..++ |.+|+.|++
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLEL 535 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEe
Confidence 3445778888888888888887 6777777 888887764
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2e-21 Score=189.25 Aligned_cols=295 Identities=21% Similarity=0.212 Sum_probs=180.4
Q ss_pred CCccceEEeecCccc------ccCCCcccCCCc-ccceeecccccccccccccccCCCCccccEEEEeccCCCCcccccc
Q 039327 2 LTSIEELYLSNNHFQ------IPISLEPLFNHS-RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPK 74 (315)
Q Consensus 2 l~~L~~l~l~~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 74 (315)
|++|+.|.+.++... ..+| ..+..+| +|+.|.+.++++..+|..+ ...+|+.|++ .++.+. .++.
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-----~~~~L~~L~L-~~s~l~-~L~~ 628 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-----RPENLVKLQM-QGSKLE-KLWD 628 (1153)
T ss_pred CccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-----CccCCcEEEC-cCcccc-cccc
Confidence 567777777654321 2233 2344443 4777777777666666553 1226777777 666554 3555
Q ss_pred ccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCC
Q 039327 75 FLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP 154 (315)
Q Consensus 75 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 154 (315)
.+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....+|... .+.
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 556666777777766554345554 3566677777776665545566666666667777776654333555543 255
Q ss_pred CceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhh-----------------------------ccCCCcc
Q 039327 155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERL-----------------------------AVGCVNL 205 (315)
Q Consensus 155 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----------------------------~~~~~~L 205 (315)
+|+.|++.+|.....+|.. ..+|++|++++|.+. .+|... +..+++|
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 6666666665433333321 234555555555543 333211 1124567
Q ss_pred cEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-----------cccccCCCCccc
Q 039327 206 EFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-----------LSDITMPKNHLE 274 (315)
Q Consensus 206 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-----------i~~l~l~~~~l~ 274 (315)
+.|++++|......|..+..+++|+.|++++|...+.+|... .+++|+.|++++|. +..++++++.+.
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 788888877666677778888888888888876444556544 57788888887752 334667777776
Q ss_pred cCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327 275 GPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVH 314 (315)
Q Consensus 275 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~ 314 (315)
.+|.++..+++|+.|++++|.--..+|..+. +++|+.++
T Consensus 860 -~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 860 -EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred -cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 6888899999999999999643335666655 66666654
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.5e-20 Score=183.15 Aligned_cols=278 Identities=18% Similarity=0.177 Sum_probs=207.6
Q ss_pred CCCcccCCCcccceeeccccccc-------ccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCce
Q 039327 19 ISLEPLFNHSRLKRLWAYNNEIK-------AEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK 91 (315)
Q Consensus 19 ~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 91 (315)
+...+|.+|++|+.|.+..+... .+|..+.. +|. +|+.|++ .++.+. .+|..+ ...+|+.|+++++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~--lp~-~Lr~L~~-~~~~l~-~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY--LPP-KLRLLRW-DKYPLR-CMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhh--cCc-ccEEEEe-cCCCCC-CCCCcC-CccCCcEEECcCcc
Confidence 33457889999999999765321 15555443 332 7999999 877765 567665 57899999999999
Q ss_pred ecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCC
Q 039327 92 MNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIP 171 (315)
Q Consensus 92 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 171 (315)
+. .++..+ ..+++|++++++++.....+| .+..+++|++|++.+|.....+|..+.. +++|+.|++.+|.....+|
T Consensus 623 l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~-L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 623 LE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQY-LNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhc-cCCCCEEeCCCCCCcCccC
Confidence 87 566664 789999999999876555555 4788999999999998755588888776 8899999999976555677
Q ss_pred ccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccc-----------------------------c
Q 039327 172 SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFC-----------------------------R 222 (315)
Q Consensus 172 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----------------------------~ 222 (315)
..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+...+.. .
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh
Confidence 655 7899999999998655455532 45788999998886543211 0
Q ss_pred ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-------------cccccCCCCccccCCchhhcccCCCCE
Q 039327 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-------------LSDITMPKNHLEGPIPVEFCQLYSLHI 289 (315)
Q Consensus 223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~l~l~~~~l~~~~~~~l~~~~~L~~ 289 (315)
...+++|+.|++++|.....+|..++++++|+.|++++|. +..+++++|.....+|.. .++++.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCE
Confidence 1124578899999988777889999999999999999863 233556666544445532 357889
Q ss_pred EecccCccCCCCCCCcc-ccccceecC
Q 039327 290 LDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 290 L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
|++++|.++ .+|..+. +++|+.|++
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEEC
Confidence 999999998 7887777 888888764
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.9e-20 Score=169.98 Aligned_cols=253 Identities=21% Similarity=0.284 Sum_probs=158.3
Q ss_pred cceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCe
Q 039327 5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED 84 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 84 (315)
-..|+++++.++ .+|. .+. ++|+.|++++|+++.+|.. .+ +|++|++ ++|.++ .+|.. .++|+.
T Consensus 203 ~~~LdLs~~~Lt-sLP~-~l~--~~L~~L~L~~N~Lt~LP~l-----p~--~Lk~LdL-s~N~Lt-sLP~l---p~sL~~ 266 (788)
T PRK15387 203 NAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLPAL-----PP--ELRTLEV-SGNQLT-SLPVL---PPGLLE 266 (788)
T ss_pred CcEEEcCCCCCC-cCCc-chh--cCCCEEEccCCcCCCCCCC-----CC--CCcEEEe-cCCccC-cccCc---ccccce
Confidence 456888888887 6773 343 4788888888888877653 33 7888888 777777 34432 357777
Q ss_pred EEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC
Q 039327 85 VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN 164 (315)
Q Consensus 85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 164 (315)
|++++|.++ .+|. ..++|+.|++++|++.. +|. .+++|++|++++|.+. .+|.. ..+|+.|++.+|
T Consensus 267 L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N 332 (788)
T PRK15387 267 LSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNN 332 (788)
T ss_pred eeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccC
Confidence 888777765 3443 12456777777777663 333 2356777777777766 45431 335666666666
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccc
Q 039327 165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP 244 (315)
Q Consensus 165 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (315)
.++ .+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.+... |.. +.+|+.|++++|.++ .+|
T Consensus 333 ~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt-~LP 398 (788)
T PRK15387 333 QLT-SLPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLT-SLP 398 (788)
T ss_pred ccc-ccccc---ccccceEecCCCccC-CCCCC----CcccceehhhccccccC-ccc---ccccceEEecCCccc-CCC
Confidence 665 34431 135666666666666 44431 34556666666665542 221 245666666666665 233
Q ss_pred cccccCCCCcEEEccCCcccc----------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327 245 QSLSKCSSLEGLYLNNNSLSD----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305 (315)
Q Consensus 245 ~~~~~~~~L~~L~l~~n~i~~----------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 305 (315)
.. .++|+.|++++|.+.. +++++|.++ .+|..++++++|+.|++++|.+++..+..+
T Consensus 399 ~l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 399 VL---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred Cc---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 22 2356666666665554 344555555 688889999999999999999998766654
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-22 Score=164.33 Aligned_cols=230 Identities=21% Similarity=0.167 Sum_probs=172.3
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
.-.+++|..|.|+ .+|..+|+.+++|+.|||+.|+|+.+. .++.+ ++ .+..|-+-++|+|++.--..|.++..+
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G--L~--~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG--LA--SLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhh--hH--hhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 4467889999997 788889999999999999999998844 44443 45 566666614488886555677788888
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCc----------------------
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN---------------------- 140 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------- 140 (315)
+.|.+.-|++. .++...+..++++..|.+.+|.+....-.++..+..++.+.+..|.
T Consensus 143 qrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 143 QRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 88888888776 3444446888888888888876654333345555555555554443
Q ss_pred ---------------------------------------CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327 141 ---------------------------------------FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181 (315)
Q Consensus 141 ---------------------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 181 (315)
..+..|...+..+++|++|++++|.++..-+.+|.....++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 11233444455588999999999999977788888999999
Q ss_pred EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 182 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+|.+.+|++. .+...+|..+..|++|++.+|+++...|.+|.....|.+|++-+|.+.
T Consensus 302 eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 302 ELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9999999988 778888888999999999999999888888888888999988887653
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=5.5e-20 Score=168.97 Aligned_cols=250 Identities=20% Similarity=0.304 Sum_probs=188.9
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
+.+.|+++++.++ .+|. .+ .++|+.|++++|.++.+|..+.. +|++|++ ++|.+. .+|..+. .+|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~LtsLP~~l~~------nL~~L~L-s~N~Lt-sLP~~l~--~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLT-TIPA-CI--PEQITTLILDNNELKSLPENLQG------NIKTLYA-NSNQLT-SIPATLP--DTIQ 244 (754)
T ss_pred CceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCCCcCChhhcc------CCCEEEC-CCCccc-cCChhhh--cccc
Confidence 4678899998887 5663 33 25799999999999998877543 8999999 888887 4665443 4799
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST 163 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (315)
.|++++|.+. .+|..+ ..+|++|++++|++.. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++.+
T Consensus 245 ~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~ 313 (754)
T PRK15370 245 EMELSINRIT-ELPERL---PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQS 313 (754)
T ss_pred EEECcCCccC-cCChhH---hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcC
Confidence 9999999987 778765 3589999999999874 565543 58999999999988 6776543 4788899999
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327 164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243 (315)
Q Consensus 164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (315)
|.++ .+|..+ .++|+.|++++|.+. .+|..+ +++|+.|++++|.+... |..+ ++.|+.|++++|.++ .+
T Consensus 314 N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 314 NSLT-ALPETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred Cccc-cCCccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CC
Confidence 9888 456543 368999999999988 677654 46899999999998753 4433 468999999999988 55
Q ss_pred ccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 244 PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 244 ~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
|..+. +.|+.|++++|++..+. ..+|..+..++.+..+++.+|.++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~~LP-------~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLVRLP-------ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH--HHHHHHhhccCCcccCc-------hhHHHHhhcCCCccEEEeeCCCcc
Confidence 65543 36888888888776322 123444555688899999999885
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-22 Score=179.66 Aligned_cols=281 Identities=26% Similarity=0.332 Sum_probs=152.2
Q ss_pred EEeecCcccccCCCcccCCCcccceeecccccccccccc----------------cccCCCCccccEEEEeccCCCCccc
Q 039327 8 LYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE----------------SHSLTAPNFQLQSLLLSSGYGDGVT 71 (315)
Q Consensus 8 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~~~~~~~L~~L~l~~~~~~~~~ 71 (315)
+++++|.+. . ..+.++++|+.+..++|++..+... ......|. +++++++ +.+.+. .
T Consensus 183 ldLr~N~~~--~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~-nl~~~di-s~n~l~-~ 255 (1081)
T KOG0618|consen 183 LDLRYNEME--V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPL-NLQYLDI-SHNNLS-N 255 (1081)
T ss_pred eecccchhh--h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccc-cceeeec-chhhhh-c
Confidence 777777765 1 1455666666666666655442211 00001111 5666666 555554 3
Q ss_pred cccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhh
Q 039327 72 FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD 151 (315)
Q Consensus 72 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 151 (315)
+|+++..+.+|+.+...+|.+. .+|..+ ...++|+.|...+|.+. -+|......++|++|++..|.+. .+|..++.
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~-~lp~ri-~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~ 331 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLV-ALPLRI-SRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA 331 (1081)
T ss_pred chHHHHhcccceEecccchhHH-hhHHHH-hhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence 4566666666666666666663 555554 34556666666666554 34555666777777777777775 66664443
Q ss_pred cCCC-ceEEEeecCcCCCCCCc-cccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCC
Q 039327 152 ILPS-LFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANL 229 (315)
Q Consensus 152 ~~~~-L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 229 (315)
.... +..++.+.+.+. ..|. .=..++.|+.|++.+|.+++..-..+. ...+|+.|++++|++..++...+.++..|
T Consensus 332 v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred hhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHh
Confidence 2221 334444444333 2221 112234466666666666644333322 46666777777776666666666666667
Q ss_pred CEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC-CCCcccc
Q 039327 230 RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL-PSCFHPL 308 (315)
Q Consensus 230 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~ 308 (315)
++|+++||.++ .+|+.+..++.|++|...+|++. .+| .+..++.|+.+|++-|+++... |.....+
T Consensus 410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-----------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-----------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-----------ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 77777777666 55566666666666666666555 234 4555555555555555554222 2222235
Q ss_pred ccceec
Q 039327 309 YIKKVH 314 (315)
Q Consensus 309 ~L~~l~ 314 (315)
.|++||
T Consensus 477 ~LkyLd 482 (1081)
T KOG0618|consen 477 NLKYLD 482 (1081)
T ss_pred ccceee
Confidence 555554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-22 Score=181.10 Aligned_cols=295 Identities=25% Similarity=0.278 Sum_probs=187.1
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
+|+.|++++|.+. ..|. .+..+++|+.|++++|.+..+|.++.+ .. +|+++.+ .++... ..|..+..+.+|+
T Consensus 46 ~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp~s~~~--~~--~l~~lnL-~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVPSSCSN--MR--NLQYLNL-KNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred eeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCchhhhh--hh--cchhhee-ccchhh-cCchhHHhhhccc
Confidence 5888888888886 6664 677788888888888888777765443 33 7777777 665554 5677777777777
Q ss_pred eEEecCceecccCChhhhhcc----------------------------------------cccce-eEeecCCCcCc--
Q 039327 84 DVHLSHIKMNGKFPNWLLENN----------------------------------------AKLET-LFLINDSIGGP-- 120 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~----------------------------------------~~L~~-L~l~~~~~~~~-- 120 (315)
.|+++.|.+. .+|..+ ..+ -.+++ +++++|.+...
T Consensus 118 ~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 118 YLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 7777776554 222111 000 01111 33333322200
Q ss_pred -------------------------------------CcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327 121 -------------------------------------FRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST 163 (315)
Q Consensus 121 -------------------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (315)
....-....++++++++.+.++ .+|.-+.. +++|+.++...
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHh-cccceEecccc
Confidence 0000111246777777777776 77765555 78888888888
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc---------------------
Q 039327 164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR--------------------- 222 (315)
Q Consensus 164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------------------- 222 (315)
|.++ .+|..+....+|+.+++..|.+. .+|.... ...+|++|++..|.+...+...
T Consensus 274 N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 274 NRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred hhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 8776 55555555566666666666665 5554443 3556666666666554322111
Q ss_pred ----ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhccc
Q 039327 223 ----NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQL 284 (315)
Q Consensus 223 ----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~ 284 (315)
=...+.|+.|.+.+|.+++..-+.+.+.+.|+.|++++|++.+ +.++||+++ .+|+.+..+
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence 0123456667777777776665666677777777777776554 667777776 678888999
Q ss_pred CCCCEEecccCccCCCCCCCccccccceecC
Q 039327 285 YSLHILDISDNNISGSLPSCFHPLYIKKVHL 315 (315)
Q Consensus 285 ~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l 315 (315)
+.|+.|...+|++. ..|+...++.|+.+|+
T Consensus 430 ~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFPELAQLPQLKVLDL 459 (1081)
T ss_pred hhhHHHhhcCCcee-echhhhhcCcceEEec
Confidence 99999999999998 7776656888888875
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.7e-19 Score=162.92 Aligned_cols=238 Identities=19% Similarity=0.280 Sum_probs=184.3
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
+...|+++++.++.+|..+.. .++.|++ ++|.++ .+|..+. .+|+.|++++|.++ .+|..+ .++|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~------~L~~L~L-s~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPE------QITTLIL-DNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQ 244 (754)
T ss_pred CceEEEeCCCCcCcCCccccc------CCcEEEe-cCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hcccc
Confidence 567899999999998887544 8999999 888888 4666544 58999999999987 677654 35799
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 188 (315)
+|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|
T Consensus 245 ~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 245 EMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred EEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC
Confidence 9999999987 4565543 57999999999998 7887553 58999999999988 4565443 47899999999
Q ss_pred cccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccC
Q 039327 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITM 268 (315)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l 268 (315)
.+. .+|... .++|+.|++++|.+++. |..+ +++|+.|++++|.++ .+|..+ .++|+.|++++|.+.
T Consensus 315 ~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt---- 380 (754)
T PRK15370 315 SLT-ALPETL---PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT---- 380 (754)
T ss_pred ccc-cCCccc---cccceeccccCCccccC-Chhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC----
Confidence 998 676554 46899999999998874 4433 478999999999988 566554 368999999999877
Q ss_pred CCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-----ccccceec
Q 039327 269 PKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-----PLYIKKVH 314 (315)
Q Consensus 269 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~L~~l~ 314 (315)
.+|..+. ++|+.|++++|++. .+|..+. ++.+..++
T Consensus 381 -------~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 381 -------NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred -------CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 3555543 26889999999998 6776543 35555554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.2e-18 Score=159.47 Aligned_cols=241 Identities=22% Similarity=0.246 Sum_probs=188.1
Q ss_pred cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
..-..|+++.+.++.+|..+.. +++.|++ ..|.++. +|. ..++|++|++++|+++ .+|. ..++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~------~L~~L~L-~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPA------HITTLVI-PDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGL 264 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhc------CCCEEEc-cCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----ccccc
Confidence 3466799999999999987543 8999999 8888884 564 3588999999999998 5564 24789
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
++|++++|.+.. +|.. +..|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|.. ..+|+.|++++
T Consensus 265 ~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 265 LELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYN 331 (788)
T ss_pred ceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccc-cCCCC---ccccccccccc
Confidence 999999998874 4432 367889999999998 6775 2578999999999998 45543 24588899999
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD-- 265 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-- 265 (315)
|.+. .+|. ...+|+.|++++|.+.+. |. .+++|+.|++++|.+. .+|.. ..+|+.|++++|.+..
T Consensus 332 N~L~-~LP~----lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 332 NQLT-SLPT----LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP 398 (788)
T ss_pred Cccc-cccc----cccccceEecCCCccCCC-CC---CCcccceehhhccccc-cCccc---ccccceEEecCCcccCCC
Confidence 9997 6664 246899999999999874 33 2467889999999988 45543 3579999999998765
Q ss_pred --------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 266 --------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 266 --------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
+++++|.++. +|... .+|+.|++++|+++ .+|+.+. ++.|+.|++
T Consensus 399 ~l~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 399 VLPSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 452 (788)
T ss_pred CcccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence 5678888874 66533 35788999999998 7888887 888888875
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=3.3e-20 Score=157.94 Aligned_cols=278 Identities=21% Similarity=0.194 Sum_probs=159.8
Q ss_pred eEEeecCcccccCCCcccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCc------cccccc
Q 039327 7 ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDG------VTFPKF 75 (315)
Q Consensus 7 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~ 75 (315)
.|+|.++.+++......+..++.|+.++++++.++. ++..+.. .+ .++++++ +.+.+. ..++..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~--~l~~l~l-~~~~~~~~~~~~~~~~~~ 76 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRP--QP--SLKELCL-SLNETGRIPRGLQSLLQG 76 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh--CC--CceEEec-cccccCCcchHHHHHHHH
Confidence 467777777633332455667778899998888754 3333332 33 6888888 666655 123445
Q ss_pred cccCCCCCeEEecCceecccCChhhhhccc---ccceeEeecCCCcC----cCcCCCcCC-CCccEEEcccCcCCCCCch
Q 039327 76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNA---KLETLFLINDSIGG----PFRLPIHPH-RRLRFLDVSNNNFQGHIPV 147 (315)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~~~~~~~ 147 (315)
+..+++|+.|++++|.+.+..+..+ ..+. +|++|++++|.+.+ .+...+..+ ++|++|++++|.+++....
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 6667888888888887765444432 3333 38888888887663 222334455 7778888888777632221
Q ss_pred hh---hhcCCCceEEEeecCcCCCC----CCccccCCCCCcEEEccCccccCcCch---hhccCCCcccEEEccCCCCCC
Q 039327 148 EI---GDILPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFLALSNNNLKG 217 (315)
Q Consensus 148 ~~---~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~ 217 (315)
.+ +..+.+|++|++.+|.+++. ++..+...++|+.|++++|.+.+.... .....+++|+.|++++|.+.+
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 11 12245777888877776621 222344456777777777766522211 112246667777777777664
Q ss_pred ccccccc-----CCCCCCEEEcCCCcccc----ccccccccCCCCcEEEccCCccccccCCCCccccCCchhhccc-CCC
Q 039327 218 HMFCRNF-----NLANLRQLQLEDNRFIG----EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL-YSL 287 (315)
Q Consensus 218 ~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~-~~L 287 (315)
.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+.+-. ...+...+... +.+
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~------~~~~~~~~~~~~~~~ 309 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG------AQLLAESLLEPGNEL 309 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH------HHHHHHHHhhcCCch
Confidence 2221111 23567777777777652 12234445566777777777665311 00122333333 466
Q ss_pred CEEecccCc
Q 039327 288 HILDISDNN 296 (315)
Q Consensus 288 ~~L~l~~n~ 296 (315)
+++++.+|.
T Consensus 310 ~~~~~~~~~ 318 (319)
T cd00116 310 ESLWVKDDS 318 (319)
T ss_pred hhcccCCCC
Confidence 777766664
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-20 Score=154.52 Aligned_cols=263 Identities=21% Similarity=0.229 Sum_probs=178.9
Q ss_pred eecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEe
Q 039327 33 LWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL 112 (315)
Q Consensus 33 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 112 (315)
++.++-.++.+|.++.. ....|++ ..|.|+..-+.+|+.+++|+.||++.|.++..-|.. |.-++++..|-+
T Consensus 51 VdCr~~GL~eVP~~LP~------~tveirL-dqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvl 122 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP------ETVEIRL-DQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVL 122 (498)
T ss_pred EEccCCCcccCcccCCC------cceEEEe-ccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHh
Confidence 44455566667777444 7778888 788888666677888888888888888887555665 466777766666
Q ss_pred ec-CCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcccc
Q 039327 113 IN-DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191 (315)
Q Consensus 113 ~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 191 (315)
.+ |+|+..-...|.++.+++.|.+.-|.+. .++...++.++++..|.+.+|.+...--..|..+..++.+.+..|.+.
T Consensus 123 yg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 123 YGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 55 7777655567778888888888777776 666666666778888888877766333335666677777777666522
Q ss_pred Cc------------CchhhccCCC----------------------cccEE--Ec-cCCCCCCcc-cccccCCCCCCEEE
Q 039327 192 GE------------IPERLAVGCV----------------------NLEFL--AL-SNNNLKGHM-FCRNFNLANLRQLQ 233 (315)
Q Consensus 192 ~~------------~~~~~~~~~~----------------------~L~~L--~l-~~n~~~~~~-~~~~~~~~~L~~L~ 233 (315)
.. .+.. +.... .++.+ .+ +.+...... ...|..+++|+.++
T Consensus 202 cdCnL~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred cccccchhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 00 0000 00000 01111 01 111122222 23467888999999
Q ss_pred cCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccce
Q 039327 234 LEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKK 312 (315)
Q Consensus 234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~ 312 (315)
+++|+++..-+.+|....++++|.+..|+|..+. ..+|.++..|+.|++.+|+|+..-|..|. ..+|..
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~----------~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS----------SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHHHHH----------HHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 9999999888888989999999999999887544 46788888888999999999888888888 777777
Q ss_pred ecC
Q 039327 313 VHL 315 (315)
Q Consensus 313 l~l 315 (315)
|++
T Consensus 351 l~l 353 (498)
T KOG4237|consen 351 LNL 353 (498)
T ss_pred eeh
Confidence 654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=6.5e-20 Score=156.12 Aligned_cols=271 Identities=23% Similarity=0.225 Sum_probs=184.7
Q ss_pred eeecccccccc--cccccccCCCCccccEEEEeccCCCCccc----cccccccCCCCCeEEecCceecc------cCChh
Q 039327 32 RLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVT----FPKFLYHQHDLEDVHLSHIKMNG------KFPNW 99 (315)
Q Consensus 32 ~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~ 99 (315)
.|+|.++.+++ ....+.. +. .++.|++ +++.+++. ++..+...+.+++++++++.+.. .++..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~--l~--~L~~l~l-~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~ 76 (319)
T cd00116 2 QLSLKGELLKTERATELLPK--LL--CLQVLRL-EGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76 (319)
T ss_pred ccccccCcccccchHHHHHH--Hh--hccEEee-cCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHH
Confidence 45666666653 3222222 44 6999999 88887543 45566778889999999987762 12233
Q ss_pred hhhcccccceeEeecCCCcCcCcCCCcCCC---CccEEEcccCcCCCC----CchhhhhcC-CCceEEEeecCcCCCC--
Q 039327 100 LLENNAKLETLFLINDSIGGPFRLPIHPHR---RLRFLDVSNNNFQGH----IPVEIGDIL-PSLFSFNISTNALHGS-- 169 (315)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~----~~~~~~~~~-~~L~~L~l~~n~~~~~-- 169 (315)
+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+. +...+.. + ++|+.|++.+|.+++.
T Consensus 77 -l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 77 -LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKD-LPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred -HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHh-CCCCceEEEcCCCcCCchHH
Confidence 46788999999999988754444444444 499999999988632 1222333 4 7999999999998732
Q ss_pred --CCccccCCCCCcEEEccCccccCcCchhh---ccCCCcccEEEccCCCCCCc----ccccccCCCCCCEEEcCCCccc
Q 039327 170 --IPSSFGNMNFLRILDLSSNQLTGEIPERL---AVGCVNLEFLALSNNNLKGH----MFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 170 --~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
++..+..+++|++|++++|.+.+.....+ ....++|+.|++++|.+.+. ....+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 23356677899999999998874322221 12457999999999998753 2344567899999999999988
Q ss_pred cccccccc-c----CCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC----CCCcc-c-cc
Q 039327 241 GEIPQSLS-K----CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL----PSCFH-P-LY 309 (315)
Q Consensus 241 ~~~~~~~~-~----~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~-~-~~ 309 (315)
+.....+. . .+.|++|++.+|.+.+.. ...+...+..+++|+.+++++|.+++.. ...+. . +.
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~------~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~ 308 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDG------AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNE 308 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHH------HHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCc
Confidence 63333222 2 378999999999876311 0123455667789999999999998553 33333 2 46
Q ss_pred cceecC
Q 039327 310 IKKVHL 315 (315)
Q Consensus 310 L~~l~l 315 (315)
|+.+++
T Consensus 309 ~~~~~~ 314 (319)
T cd00116 309 LESLWV 314 (319)
T ss_pred hhhccc
Confidence 666553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.2e-18 Score=125.10 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=72.3
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
..++.|.+|.|+++ .+| ..+..+.+|+.|++.+|+++++|..+.. .+ +|++|++ +.|.+. ..|..|..++-|
T Consensus 33 s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie~lp~~iss--l~--klr~lnv-gmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIEELPTSISS--LP--KLRILNV-GMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhhhcChhhhh--ch--hhhheec-chhhhh-cCccccCCCchh
Confidence 34444555555554 333 1344455555555555555555554443 44 4555555 433333 344445555555
Q ss_pred CeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 83 EDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 83 ~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
+.||+.+|++.. .+|..+ -.++.|+.|++++|.+. .+|..++++++|+.|.+.+|.+- .+|.++.. +..|++|.+
T Consensus 105 evldltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhi 180 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHI 180 (264)
T ss_pred hhhhccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhc
Confidence 555555554432 333332 24444555555555443 34444445555555555555444 44554444 445555555
Q ss_pred ecCcCC
Q 039327 162 STNALH 167 (315)
Q Consensus 162 ~~n~~~ 167 (315)
++|+++
T Consensus 181 qgnrl~ 186 (264)
T KOG0617|consen 181 QGNRLT 186 (264)
T ss_pred ccceee
Confidence 555544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.9e-18 Score=124.60 Aligned_cols=155 Identities=28% Similarity=0.459 Sum_probs=99.2
Q ss_pred cccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcE
Q 039327 103 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182 (315)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 182 (315)
++.+++.|.+++|+++ .+|..++.+.+|+.|++.+|+++ ++|..+.. ++.|+.|++..|++. ..|..|+++|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhh
Confidence 4556666777777766 45556667777777777777776 67766665 667777777777666 66777777777777
Q ss_pred EEccCcccc-CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCC
Q 039327 183 LDLSSNQLT-GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261 (315)
Q Consensus 183 L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 261 (315)
|++..|++. ..+|..+| .+..|+.|.++.|.+. ..|..+.++.+|+.|.+.+|.+- ..|..++.+..|++|.+++|
T Consensus 107 ldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 777766654 23455555 3555666666666553 34455556666666666666655 45566666666666666666
Q ss_pred ccc
Q 039327 262 SLS 264 (315)
Q Consensus 262 ~i~ 264 (315)
+++
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 655
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.1e-13 Score=113.75 Aligned_cols=208 Identities=22% Similarity=0.233 Sum_probs=144.6
Q ss_pred CCCccceEEeecCcccccCCC-cccCCCcccceeecccccccc---cccccccCCCCccccEEEEeccCCCCcccccc-c
Q 039327 1 HLTSIEELYLSNNHFQIPISL-EPLFNHSRLKRLWAYNNEIKA---EITESHSLTAPNFQLQSLLLSSGYGDGVTFPK-F 75 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~ 75 (315)
++++|+.+.+.++... ..+. .+...||+++.|||++|-+.. +..-+. .+| +|+.|++ +.|.+.-...+ .
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e--qLp--~Le~LNl-s~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAE--QLP--SLENLNL-SSNRLSNFISSNT 192 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHH--hcc--cchhccc-ccccccCCccccc
Confidence 4678999999999775 2221 467889999999999997665 222222 277 8999999 77776532222 2
Q ss_pred cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCc--hhhhhcC
Q 039327 76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIP--VEIGDIL 153 (315)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~ 153 (315)
-..+++|+.|.++.|.++..-..++...+|+|+.|++..|...........-+..|+.|++++|.+- .++ ..... +
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~-l 270 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGT-L 270 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccc-c
Confidence 2257899999999999986666666788999999999998533233344555778999999998876 444 33333 7
Q ss_pred CCceEEEeecCcCCCC-CCcc-----ccCCCCCcEEEccCccccCcC-chhhccCCCcccEEEccCCCCCC
Q 039327 154 PSLFSFNISTNALHGS-IPSS-----FGNMNFLRILDLSSNQLTGEI-PERLAVGCVNLEFLALSNNNLKG 217 (315)
Q Consensus 154 ~~L~~L~l~~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 217 (315)
+.|..|+++.++++.. .|+. ...+++|++|++..|++.+.- -..+. ..++|+.+.+.+|.+..
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccccccc
Confidence 8889999999888732 2322 356788999999999885211 12222 36677777777776653
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.4e-13 Score=114.71 Aligned_cols=135 Identities=19% Similarity=0.102 Sum_probs=56.4
Q ss_pred ccEEEEeccCCCCccccc-cccccCCCCCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcC-CCcCCCCcc
Q 039327 56 QLQSLLLSSGYGDGVTFP-KFLYHQHDLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRL-PIHPHRRLR 132 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~ 132 (315)
+|+.+.+ .++.+..... .....|++++.||++.|-+.. .....+...+|+|+.|+++.|.+...... .-..+++++
T Consensus 122 kL~~IsL-dn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISL-DNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheee-cCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 4555555 4444432111 234445555555555554432 11122234555555555555544321110 011234455
Q ss_pred EEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcccc
Q 039327 133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLT 191 (315)
Q Consensus 133 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 191 (315)
.|.++.|+++..-...+...+|+++.|++.+|...........-+..|++|++++|.+.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 55555555543222222223555555555555211111112233344555555555443
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=2.5e-13 Score=110.18 Aligned_cols=138 Identities=23% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCceEEEeecCcCCC----CCCccccCCCCCcEEEccCccccCcCc---hhhccCCCcccEEEccCCCCCC----ccccc
Q 039327 154 PSLFSFNISTNALHG----SIPSSFGNMNFLRILDLSSNQLTGEIP---ERLAVGCVNLEFLALSNNNLKG----HMFCR 222 (315)
Q Consensus 154 ~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~----~~~~~ 222 (315)
+.|+.+...+|++.. .+...|...+.|+.+.+..|.+..... ...+.++++|+.||++.|-++. .+..+
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 455666665555431 112234555666666666665541111 1122356667777777666553 23344
Q ss_pred ccCCCCCCEEEcCCCcccccccccc-----ccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327 223 NFNLANLRQLQLEDNRFIGEIPQSL-----SKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297 (315)
Q Consensus 223 ~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~ 297 (315)
+..+++|+++++++|.+...-..++ ...|.|+.+.+.+|.|+.=. ...+..+....|.|..|++++|++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da------~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA------ALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH------HHHHHHHHhcchhhHHhcCCcccc
Confidence 5566677777777776654322222 23567777777777665300 001122233456677777777776
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-12 Score=106.10 Aligned_cols=187 Identities=23% Similarity=0.243 Sum_probs=106.0
Q ss_pred cccCCCCCeEEecCceecccCCh---hhhhcccccceeEeecCCCcCcC-------------cCCCcCCCCccEEEcccC
Q 039327 76 LYHQHDLEDVHLSHIKMNGKFPN---WLLENNAKLETLFLINDSIGGPF-------------RLPIHPHRRLRFLDVSNN 139 (315)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~~~ 139 (315)
+..+++|+.+++|+|-+....+. .+++++..|++|.|.+|.+.... .......++|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34456777777777766543332 22456667777777777654311 112344566777777777
Q ss_pred cCCCCCch----hhhhcCCCceEEEeecCcCCC----CCCccccCCCCCcEEEccCccccCcCch---hhccCCCcccEE
Q 039327 140 NFQGHIPV----EIGDILPSLFSFNISTNALHG----SIPSSFGNMNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFL 208 (315)
Q Consensus 140 ~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L 208 (315)
.+. ..+. ..+...+.|+.+.+..|+|.. .....+..+++|+.|++.+|.++..... ..+..+++|+.+
T Consensus 168 rle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 168 RLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred ccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 665 3332 223335677777777776641 1123456677777777777766522211 122346667777
Q ss_pred EccCCCCCCcccccc-----cCCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCcc
Q 039327 209 ALSNNNLKGHMFCRN-----FNLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSL 263 (315)
Q Consensus 209 ~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i 263 (315)
+++.|.+......++ ...+.|+.+.+.+|.++.. +...+...|.|+.|++++|++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777777654322221 2466777777777776532 223334466777777777776
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=3e-13 Score=116.32 Aligned_cols=174 Identities=28% Similarity=0.366 Sum_probs=136.8
Q ss_pred CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327 80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF 159 (315)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 159 (315)
.--...|++.|++. .+|..+ ..+-.|+.+.++.|.+. .+|.++.++..|++++++.|++. .+|..++. + -|+.|
T Consensus 75 tdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKVL 148 (722)
T ss_pred cchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-cceeE
Confidence 33446778888887 677764 67788888888888876 67888888889999999998887 88888885 4 68888
Q ss_pred EeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239 (315)
Q Consensus 160 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (315)
.+.+|.++ .+|..++..++|..++.+.|.+. .+|..+. .+..|+.|.++.|++...++ .+. .-.|..||++.|++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCce
Confidence 88888888 77878888888888888888887 7777766 47788888888888776543 333 33478888888888
Q ss_pred ccccccccccCCCCcEEEccCCcccc
Q 039327 240 IGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 240 ~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
. .+|..|..++.|++|.|.+|.+++
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC
Confidence 7 778888888888888888887773
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.6e-11 Score=92.12 Aligned_cols=129 Identities=29% Similarity=0.363 Sum_probs=39.2
Q ss_pred CCCceEEEeecCcCCCCCCcccc-CCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327 153 LPSLFSFNISTNALHGSIPSSFG-NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231 (315)
Q Consensus 153 ~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 231 (315)
+..+++|++.+|.|+ .+. .++ .+.+|+.|++++|.+. .++. ...++.|++|++++|.++.........+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 345677777777776 232 343 4566777777777776 4432 223666777777777766543222234666777
Q ss_pred EEcCCCcccccc-ccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecc
Q 039327 232 LQLEDNRFIGEI-PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDIS 293 (315)
Q Consensus 232 L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~ 293 (315)
|++++|.+.... -..+..+|+|+.|++.+|.+..-. ... ...+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~----~YR---~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK----NYR---LFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST----THH---HHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh----hHH---HHHHHHcChhheeCCE
Confidence 777777665321 234556666667776666655311 011 2335556666666543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=4.3e-11 Score=104.94 Aligned_cols=195 Identities=29% Similarity=0.371 Sum_probs=117.6
Q ss_pred eeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC-CCCeEEecCceecccCChhhhhccccccee
Q 039327 32 RLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH-DLEDVHLSHIKMNGKFPNWLLENNAKLETL 110 (315)
Q Consensus 32 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 110 (315)
.+.++.+.+..-+..+.. .. .++.|++ .++.+. .++....... +|+.|++++|.+. .+|..+ +.+++|+.|
T Consensus 97 ~l~~~~~~~~~~~~~~~~--~~--~l~~L~l-~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNISELLE--LT--NLTSLDL-DNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNL 168 (394)
T ss_pred eeeccccccccCchhhhc--cc--ceeEEec-CCcccc-cCccccccchhhcccccccccchh-hhhhhh-hcccccccc
Confidence 355555555332222222 22 5777777 666666 3444444553 7777777777776 443332 677777777
Q ss_pred EeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccc
Q 039327 111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190 (315)
Q Consensus 111 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 190 (315)
++++|++.. ++......+.|+.|++++|.+. .+|..... ...|+++.+.+|.+. ..+..+.++.++..+.+.+|.+
T Consensus 169 ~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 169 DLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 777777663 3443335667777777777776 66665432 445777777777433 3445566667777777776666
Q ss_pred cCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327 191 TGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242 (315)
Q Consensus 191 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (315)
. ..+.... .+++++.|++++|.+..... +....+++.++++++.+...
T Consensus 245 ~-~~~~~~~-~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 245 E-DLPESIG-NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred e-eccchhc-cccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 5 3333333 46667777777777766443 55667777777777766543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.6e-12 Score=111.98 Aligned_cols=158 Identities=30% Similarity=0.416 Sum_probs=70.9
Q ss_pred cccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhh
Q 039327 72 FPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD 151 (315)
Q Consensus 72 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 151 (315)
+|..+..+..|+.+.++.|.+. .+|..+ +++..|..++++.|+++ ..|..+..++ |+.|.+++|.++ .+|..+.
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig- 163 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIG- 163 (722)
T ss_pred CchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccc-
Confidence 4444444444444444444443 334333 44444444444444443 2333333332 444444444444 4444444
Q ss_pred cCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327 152 ILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231 (315)
Q Consensus 152 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 231 (315)
..+.|..|+.+.|.+. .+|..++.+.+|+.+.+..|.+. .+|..+. .-.|..||+++|++.. +|..|.+++.|++
T Consensus 164 ~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDfScNkis~-iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDFSCNKISY-LPVDFRKMRHLQV 238 (722)
T ss_pred cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeecccCceee-cchhhhhhhhhee
Confidence 2444444444444444 34444444444444444444444 4444443 2224444555444432 2344444455555
Q ss_pred EEcCCCccc
Q 039327 232 LQLEDNRFI 240 (315)
Q Consensus 232 L~l~~n~~~ 240 (315)
|-|..|.++
T Consensus 239 l~LenNPLq 247 (722)
T KOG0532|consen 239 LQLENNPLQ 247 (722)
T ss_pred eeeccCCCC
Confidence 555544443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.2e-11 Score=98.90 Aligned_cols=198 Identities=23% Similarity=0.230 Sum_probs=95.9
Q ss_pred ccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCce-ecc----cCC
Q 039327 23 PLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK-MNG----KFP 97 (315)
Q Consensus 23 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~----~~~ 97 (315)
.+.-+.+|+.+.++.+.-..+-.-.. .-| .|+++.+ .+..+... | .+.-...+.....+.-. .+| .++
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~~~--~kp--tl~t~~v-~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDIEL--LKP--TLQTICV-HNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred chHHhhhhheeeeeccchhheeceee--cCc--hhheeee-eccccccc-c-cccchhhhcCccCCCCCccCCceEEecc
Confidence 35556778888888875433111100 134 7888888 66554421 1 11111111111111100 111 122
Q ss_pred hhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCC
Q 039327 98 NWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177 (315)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 177 (315)
.| ..|+++++++|.++ .+..+..-.|+++.|++++|.+. .+.. +.. +++|+.||+++|.++ ....+-.++
T Consensus 282 TW-----q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~-L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TW-----QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAE-LPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hH-----hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhh-cccceEeecccchhH-hhhhhHhhh
Confidence 11 34566666666554 34444555566666666666654 3322 222 556666666666555 223333445
Q ss_pred CCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCc-ccccccCCCCCCEEEcCCCccc
Q 039327 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH-MFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
-+++.|.+++|.+. .+.. +. .+-+|..||+++|++... --..+..+|.|+++.+.+|.+.
T Consensus 352 GNIKtL~La~N~iE-~LSG-L~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIE-TLSG-LR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cCEeeeehhhhhHh-hhhh-hH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55666666666554 2211 11 244556666666665432 1234455666666666666655
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=8e-11 Score=103.21 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=131.1
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCC-CccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHR-RLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS 162 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (315)
.++.+.+.+...... ....+.++.+++.++.+.. ++......+ +|+.|++++|.+. .+|..+.. +++|+.|++.
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhc-cccccccccC
Confidence 466666665323222 1345677778888777763 444445553 7888888888776 66545554 7788888888
Q ss_pred cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327 163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242 (315)
Q Consensus 163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (315)
.|.++ ..|......+.|+.+++++|.+. .+|.... ....|+++.+++|.+.. .+..+....++..+.+.+|++. .
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~ 246 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-D 246 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-e
Confidence 88777 45544446777888888888877 6666542 25557788888775332 2445556677777777777765 3
Q ss_pred cccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc
Q 039327 243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306 (315)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 306 (315)
.+..+..++.++.|++++|.+..++ . ++...+++.|++++|.++..++....
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~~i~-----------~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQISSIS-----------S-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccchhccccccceeccccccccccc-----------c-ccccCccCEEeccCccccccchhhhc
Confidence 3566667777888888888777533 2 66677788888888777655554433
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=7.7e-11 Score=89.53 Aligned_cols=126 Identities=29% Similarity=0.339 Sum_probs=36.8
Q ss_pred CCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEE
Q 039327 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFL 208 (315)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 208 (315)
.++++|++.++.++ .+. .+...+.+|+.|++++|.++ .++ .+..++.|++|++++|.+. .+...+...+++|+.|
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 34455555555444 221 22222445555555555555 222 2444555566666666555 3433322235556666
Q ss_pred EccCCCCCCcc-cccccCCCCCCEEEcCCCcccccc---ccccccCCCCcEEEcc
Q 039327 209 ALSNNNLKGHM-FCRNFNLANLRQLQLEDNRFIGEI---PQSLSKCSSLEGLYLN 259 (315)
Q Consensus 209 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~ 259 (315)
.+++|.+.+.. -..+..+++|+.|++.+|.++... ...+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 66666554321 234456677777777777765321 1334556777777654
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.08 E-value=4.2e-10 Score=103.52 Aligned_cols=107 Identities=27% Similarity=0.458 Sum_probs=74.1
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
++.|+++++.+.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEEC
Confidence 5667777777777777664 67777777777777777667767777777777777777777667766665 667777777
Q ss_pred ecCcCCCCCCccccCC-CCCcEEEccCccc
Q 039327 162 STNALHGSIPSSFGNM-NFLRILDLSSNQL 190 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~ 190 (315)
++|.+++.+|..+... .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 7777777777665542 3455666666643
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=1.2e-10 Score=93.35 Aligned_cols=119 Identities=25% Similarity=0.280 Sum_probs=61.5
Q ss_pred cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCc
Q 039327 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLE 254 (315)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 254 (315)
..+..|+++++++|.+. .+..++- -.|.++.|+++.|.+.... .+..+++|++||+++|.++ .+..|-..+.+.+
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 34455566666666555 4444443 3555666666666555432 2445556666666666554 3333333444455
Q ss_pred EEEccCCcccc------------ccCCCCcccc-CCchhhcccCCCCEEecccCccC
Q 039327 255 GLYLNNNSLSD------------ITMPKNHLEG-PIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 255 ~L~l~~n~i~~------------l~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
.|.+.+|.|.+ +++.+|++.. .-...++++|-|+.+.+.+|.+.
T Consensus 356 tL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55555554443 2222222221 01235667777777777777776
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.99 E-value=1.2e-09 Score=100.48 Aligned_cols=106 Identities=35% Similarity=0.555 Sum_probs=57.0
Q ss_pred ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210 (315)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 210 (315)
++.|+++++.+.+.+|..+.. +++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+. .+++|+.|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEEC
Confidence 455555555555555555544 55555555555555555555555555555555555555555555444 3555555555
Q ss_pred cCCCCCCcccccccC-CCCCCEEEcCCCc
Q 039327 211 SNNNLKGHMFCRNFN-LANLRQLQLEDNR 238 (315)
Q Consensus 211 ~~n~~~~~~~~~~~~-~~~L~~L~l~~n~ 238 (315)
++|.+.+..|..+.. ..++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 555555555544432 2234455555554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=5.2e-10 Score=105.45 Aligned_cols=128 Identities=20% Similarity=0.119 Sum_probs=94.0
Q ss_pred CCccceEEeecCc--ccccCCCcccCCCcccceeecccc-cccccccccccCCCCccccEEEEeccCCCCcccccccccc
Q 039327 2 LTSIEELYLSNNH--FQIPISLEPLFNHSRLKRLWAYNN-EIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYH 78 (315)
Q Consensus 2 l~~L~~l~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 78 (315)
+++|++|-+.+|. +. .++.+.|..+|.|+.||+++| .+..+|..+++ +- +||+|++ +.+.+. .+|..+.+
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--Li--~LryL~L-~~t~I~-~LP~~l~~ 616 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--LV--HLRYLDL-SDTGIS-HLPSGLGN 616 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhh--hh--hhhcccc-cCCCcc-ccchHHHH
Confidence 5678889888886 43 556556889999999999976 45569988876 55 8999999 888887 79999999
Q ss_pred CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCc--CcCcCCCcCCCCccEEEcc
Q 039327 79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIG--GPFRLPIHPHRRLRFLDVS 137 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~ 137 (315)
+..|.+|++..+.....+|.. ...+++|++|.+...... ......+..+.+|+.+...
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred HHhhheeccccccccccccch-hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 999999999887765455544 467899999998876422 1122234445555555543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=2.2e-09 Score=67.20 Aligned_cols=60 Identities=42% Similarity=0.626 Sum_probs=34.7
Q ss_pred CCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327 228 NLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297 (315)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~ 297 (315)
+|+.|++++|.++...+.++..+++|++|++++|.+..+. +.+|.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~----------~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP----------PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE----------TTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC----------HHHHcCCCCCCEEeCcCCcC
Confidence 4556666666665444455555666666666666555433 45566666666666666653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.6e-09 Score=66.18 Aligned_cols=59 Identities=39% Similarity=0.397 Sum_probs=30.8
Q ss_pred cccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc
Q 039327 204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS 262 (315)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (315)
+|++|++++|.+....+..+..+++|++|++++|.++...+.++..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555554444455555555555555554
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-10 Score=93.34 Aligned_cols=180 Identities=20% Similarity=0.107 Sum_probs=120.8
Q ss_pred ccEEEEeccCCCCcc-ccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCc--CcCCCcCCCCcc
Q 039327 56 QLQSLLLSSGYGDGV-TFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGP--FRLPIHPHRRLR 132 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~ 132 (315)
.+|++|+ ++..++. .+-..++.|.+|+.|.+.++++.+.+...+ +.-.+|+.++++.+.-... ..-.+.+|..|.
T Consensus 186 Rlq~lDL-S~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDL-SNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhc-chhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 6888888 7766663 344456778889999998888887777765 6678899999888643221 112366788899
Q ss_pred EEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCC---CCCCccccCCCCCcEEEccCccc-cCcCchhhccCCCcccE
Q 039327 133 FLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALH---GSIPSSFGNMNFLRILDLSSNQL-TGEIPERLAVGCVNLEF 207 (315)
Q Consensus 133 ~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~---~~~~~~l~~~~~L~~L~l~~n~~-~~~~~~~~~~~~~~L~~ 207 (315)
.|++++|.+..+... ...+.-++|..|+++|+.-. .-+..-..++|++..||++++.. ....-..++ .++.|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchhee
Confidence 999998887543322 22333467888888886433 11122246788999999988743 333333444 5888999
Q ss_pred EEccCCCCCCcccc---cccCCCCCCEEEcCCCccc
Q 039327 208 LALSNNNLKGHMFC---RNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 208 L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~~~ 240 (315)
|.++.|.. +.|. .+...|.|.+|++.|+--.
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 99998864 2333 3456788999998886543
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.1e-09 Score=87.64 Aligned_cols=211 Identities=16% Similarity=0.079 Sum_probs=124.9
Q ss_pred CCCeEEecCceecccC-ChhhhhcccccceeEeecCCCcC--cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327 81 DLEDVHLSHIKMNGKF-PNWLLENNAKLETLFLINDSIGG--PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF 157 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 157 (315)
-++.+.+.++.+.... ...+-..++.++++++.+|.+++ .+...+.++|+|+.|+++.|++...+-..-.. ..+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p-~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP-LKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc-ccceE
Confidence 3445556555553221 12223556778888888887765 33345677888888888888776433222122 55888
Q ss_pred EEEeecCcCC-CCCCccccCCCCCcEEEccCccccCcCc-hhhccC-CCcccEEEccCCCCCC--cccccccCCCCCCEE
Q 039327 158 SFNISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIP-ERLAVG-CVNLEFLALSNNNLKG--HMFCRNFNLANLRQL 232 (315)
Q Consensus 158 ~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~-~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L 232 (315)
.|.+.+..+. .+....+..+|.+++++++.|++....- ..-... -+.+.++.+-+|.... .....-+.++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 8888887665 3445566778888888888885541100 000001 2245555555554221 111222356777778
Q ss_pred EcCCCccccccc-cccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC
Q 039327 233 QLEDNRFIGEIP-QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301 (315)
Q Consensus 233 ~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 301 (315)
.+..|.+...-. .....+|.+..|+++.++|.++. -.+++.+++.|+-|-+.++.+++.+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa---------svD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA---------SVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHH---------HHHHHcCCchhheeeccCCcccccc
Confidence 887777654322 33445677777888877776544 1246778888888888888876444
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=6.5e-09 Score=98.20 Aligned_cols=205 Identities=20% Similarity=0.212 Sum_probs=120.9
Q ss_pred cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCC--CccccccccccCCCCCeEEecCceecccCChhhh
Q 039327 24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYG--DGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLL 101 (315)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 101 (315)
..+....+.+.+.++.+..++... .+.++++|-+ ..+. +.....+.|..++.|+.||+++|.--+.+|..+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~-----~~~~L~tLll-~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I- 591 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSS-----ENPKLRTLLL-QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI- 591 (889)
T ss_pred ccchhheeEEEEeccchhhccCCC-----CCCccceEEE-eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-
Confidence 334456777777777776655542 2226888888 6664 343344557778888888888877666888886
Q ss_pred hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC--CCCCccccCCCC
Q 039327 102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSSFGNMNF 179 (315)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~ 179 (315)
+.+-+|++|+++++.+. .+|..+++++.|.+|++..+.....+|..... +.+|++|.+...... ...-..+..+.+
T Consensus 592 ~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~-L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE-LQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhh-cccccEEEeeccccccchhhHHhhhcccc
Confidence 78888888888888877 67888888888888888776654334333333 778888888765422 111122344455
Q ss_pred CcEEEccCccccCcCchhhccCCCccc----EEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 180 LRILDLSSNQLTGEIPERLAVGCVNLE----FLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 180 L~~L~l~~n~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
|+.+........ +-..+. ....|. .+.+.++.. ...+..+..+++|+.|.+.++.+.+
T Consensus 670 L~~ls~~~~s~~--~~e~l~-~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 670 LENLSITISSVL--LLEDLL-GMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhheeecchhH--hHhhhh-hhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence 555444332220 001111 122221 222222111 1233445567777777777777653
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.69 E-value=2.1e-09 Score=85.06 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=56.8
Q ss_pred ccEEEEeccCCCCcccccc----ccccCCCCCeEEecCceecc----cCChhh--------hhcccccceeEeecCCCcC
Q 039327 56 QLQSLLLSSGYGDGVTFPK----FLYHQHDLEDVHLSHIKMNG----KFPNWL--------LENNAKLETLFLINDSIGG 119 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~----~~~~~~--------~~~~~~L~~L~l~~~~~~~ 119 (315)
++++.++ +.|.+....|+ .++.-..|.+|.+++|.+.. .+...+ .++-|.|+++....|++..
T Consensus 93 ~l~~v~L-SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 93 RLQKVDL-SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred cceeeec-cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 5555555 55555444332 23344555555555554421 111111 1223455555555554432
Q ss_pred cC----cCCCcCCCCccEEEcccCcCCCCCc-----hhhhhcCCCceEEEeecCcCCCC----CCccccCCCCCcEEEcc
Q 039327 120 PF----RLPIHPHRRLRFLDVSNNNFQGHIP-----VEIGDILPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLS 186 (315)
Q Consensus 120 ~~----~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~ 186 (315)
-. ...+..-..|+.+.+.+|.+...-. ..++. +.+|+.||+++|.++.. +...++.|+.|++|.+.
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 10 0112222345555555555442100 01122 44555555555555421 11233445555555555
Q ss_pred Ccccc
Q 039327 187 SNQLT 191 (315)
Q Consensus 187 ~n~~~ 191 (315)
.|-+.
T Consensus 251 DClls 255 (388)
T COG5238 251 DCLLS 255 (388)
T ss_pred chhhc
Confidence 55444
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7e-10 Score=88.77 Aligned_cols=155 Identities=22% Similarity=0.159 Sum_probs=68.2
Q ss_pred ccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC-cCCC-CCCccccCCCCCcE
Q 039327 106 KLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN-ALHG-SIPSSFGNMNFLRI 182 (315)
Q Consensus 106 ~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~-~~~~~l~~~~~L~~ 182 (315)
.++++|+++..++. .....++.|.+|+.|.+.++.+.+.+...+.. -.+|+.++++++ +++. ...-.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35555555544432 11123444555555555555555555555544 345555555543 2221 11112345555555
Q ss_pred EEccCccccCcCchhh-ccCCCcccEEEccCCCCC---CcccccccCCCCCCEEEcCCCc-cccccccccccCCCCcEEE
Q 039327 183 LDLSSNQLTGEIPERL-AVGCVNLEFLALSNNNLK---GHMFCRNFNLANLRQLQLEDNR-FIGEIPQSLSKCSSLEGLY 257 (315)
Q Consensus 183 L~l~~n~~~~~~~~~~-~~~~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~ 257 (315)
|+++.|....+.-... ..--++++.|+++|+.-. .......+++++|.+||+++|. ++.....++..++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 5555554432221111 111224555555554311 0111122345555666655543 2222233444555555555
Q ss_pred ccCC
Q 039327 258 LNNN 261 (315)
Q Consensus 258 l~~n 261 (315)
++.|
T Consensus 345 lsRC 348 (419)
T KOG2120|consen 345 LSRC 348 (419)
T ss_pred hhhh
Confidence 5554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.8e-09 Score=92.97 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=48.9
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
++..+++ +.+.+.. +...+..+++|++|++++|.++...+ +..++.|+.|++.+|.+.. ...+..++.|+.++
T Consensus 96 ~l~~l~l-~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 96 SLEALDL-YDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred ceeeeec-cccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 5555555 5555542 22224445555555555555543222 1344445555555555543 22233455555555
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 167 (315)
+++|.+. .+.......+..++.+.+.+|.+.
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 5555554 332210112445555555555544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=3.2e-09 Score=93.46 Aligned_cols=240 Identities=26% Similarity=0.212 Sum_probs=129.1
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
..++.+++..|.+.. +. ..+..+..|+.|++.+|.+..+...+.. ++ +|++|++ +.|.++..-+ +..++.|
T Consensus 72 ~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~--~~--~L~~L~l-s~N~I~~i~~--l~~l~~L 142 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSS--LV--NLQVLDL-SFNKITKLEG--LSTLTLL 142 (414)
T ss_pred HhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhh--hh--cchheec-cccccccccc--hhhccch
Confidence 345556666666652 12 2466777788888888877774442222 34 7888888 7777765332 5566668
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
+.|++++|.++ .+.. +..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+. .+.. +.. +..+..+++
T Consensus 143 ~~L~l~~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~-~~~-~~~l~~~~l 215 (414)
T KOG0531|consen 143 KELNLSGNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEG-LDL-LKKLVLLSL 215 (414)
T ss_pred hhheeccCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-cccc-hHH-HHHHHHhhc
Confidence 88888888776 3332 2457778888888887764322 1 456677777777777665 2221 111 223334456
Q ss_pred ecCcCCCCCCccccCCC--CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327 162 STNALHGSIPSSFGNMN--FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (315)
..|.++...+ +.... +|+.+++++|.+. ..+..+. ....+..+++..+.+... ..+...+.+..+....+.+
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~-~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLE-NLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCccc-ccccccc-ccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 6666552222 11222 2666777777665 3322222 355566666666655432 1122334444444444443
Q ss_pred ccc---ccc-ccccCCCCcEEEccCCccc
Q 039327 240 IGE---IPQ-SLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 240 ~~~---~~~-~~~~~~~L~~L~l~~n~i~ 264 (315)
... ... .....+.+....+..+.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cchhhhhccccccccccccccccccCccc
Confidence 311 111 1233445555555555443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.8e-08 Score=80.85 Aligned_cols=204 Identities=18% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCcccceeecccccccc--cccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327 26 NHSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN 103 (315)
Q Consensus 26 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (315)
.++++++++|.+|.+++ ....+.+ ..| .|+.|++ ++|.+...+-.--....+|++|.+.+..+......+....
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile-~lP--~l~~LNl-s~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILE-QLP--ALTTLNL-SCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHh-cCc--cceEeec-cCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 35667777777777665 1111111 255 6777777 6666654332221345567777777666655444444566
Q ss_pred ccccceeEeecCCCcCcCc--CCCc-CCCCccEEEcccCcCCC-CCchhhhhcCCCceEEEeecCcCCCC-CCccccCCC
Q 039327 104 NAKLETLFLINDSIGGPFR--LPIH-PHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMN 178 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~--~~l~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~ 178 (315)
+|.+++|.++.|.+..... .... .-+.+.++....|.... .--..+...+|++..+-+..+.+... ....+..+|
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 6777777777664322100 0000 11234444444443210 00011222356666666666655421 122344555
Q ss_pred CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccc------ccccCCCCCCEEE
Q 039327 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF------CRNFNLANLRQLQ 233 (315)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~ 233 (315)
.+..|+++.+++...-..+....++.+.-|.++.+.+.+..- -.+.++++++.|+
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 566667777766533333334456677777777666543221 1233556666655
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=2.4e-09 Score=95.40 Aligned_cols=128 Identities=27% Similarity=0.266 Sum_probs=75.6
Q ss_pred CceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEc
Q 039327 155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL 234 (315)
Q Consensus 155 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 234 (315)
.|...+.++|.+. .+...+.-++.++.|++++|++. .+. . ...++.|+.||++.|.++...--....++ |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-N-LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-H-HHhcccccccccccchhccccccchhhhh-heeeee
Confidence 4555666666665 45555666677777777777776 333 2 23477777777777776654333333444 777777
Q ss_pred CCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 235 EDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 235 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
.+|.++.. ..+.++++|+.||+++|-|..-. .+ ..+..+..|+.|.+.||.+.
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hs--------eL-~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHS--------EL-EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcch--------hh-hHHHHHHHHHHHhhcCCccc
Confidence 77776522 22346667777777777655311 11 12445556677777777765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=1.4e-09 Score=96.93 Aligned_cols=130 Identities=25% Similarity=0.197 Sum_probs=91.2
Q ss_pred CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceE
Q 039327 79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFS 158 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 158 (315)
+..|.+.++++|.+. .+..++ .-++.++.|+|++|++..+. .+..+++|++|+++.|.+. .+|.--...+ .|+.
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL 236 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hhee
Confidence 456777888888775 333443 66788899999999887533 6788889999999998887 7776544434 4888
Q ss_pred EEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCC
Q 039327 159 FNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK 216 (315)
Q Consensus 159 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 216 (315)
|.+.+|.++ .+. .+.++.+|+.||++.|-+.+.-.-...-.+..|+.|.+.||.+-
T Consensus 237 L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 899888877 332 46788888888998887763222121112556778888888653
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=7.1e-09 Score=86.70 Aligned_cols=18 Identities=11% Similarity=0.157 Sum_probs=10.1
Q ss_pred hhhcccCCCCEEecccCc
Q 039327 279 VEFCQLYSLHILDISDNN 296 (315)
Q Consensus 279 ~~l~~~~~L~~L~l~~n~ 296 (315)
+.+..|++|+++++.+++
T Consensus 420 e~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQ 437 (483)
T ss_pred HHHhhCcccceeeeechh
Confidence 344555666666666553
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=4.9e-08 Score=69.40 Aligned_cols=82 Identities=26% Similarity=0.259 Sum_probs=35.0
Q ss_pred CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327 80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF 159 (315)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 159 (315)
.+|+..++++|.+. .+|..+...++.++.+++.+|.++ .+|..++.++.|+.|+++.|.+. ..|..++. +.++-+|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 34444444444444 333333333444444444444444 23333444444444444444443 34444433 3344444
Q ss_pred EeecCc
Q 039327 160 NISTNA 165 (315)
Q Consensus 160 ~l~~n~ 165 (315)
+..+|.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 444443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=4.9e-08 Score=69.41 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=92.2
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccc-cCCCCCeEEecCceecccCChhhhhccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLY-HQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
.+..++|+.|++-.+++.... ......|+.+++ ++|.+. .+|..+. +.+.++++++++|.+. .+|.. +..++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~-l~~~~el~~i~l-s~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE-~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYM-LSKGYELTKISL-SDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEE-LAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHH-HhCCceEEEEec-ccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHH-HhhhHHh
Confidence 466777888876654433322 233447888899 888887 4555554 5578999999999998 77887 4899999
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 167 (315)
+.|+++.|++. ..|..+..+.++.+|+..++... .++.+++. .......++.++.+.
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLG 159 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCccc
Confidence 99999999987 46666667888999999888886 78877553 223333344444444
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.22 E-value=8.9e-07 Score=70.46 Aligned_cols=205 Identities=22% Similarity=0.185 Sum_probs=114.3
Q ss_pred ccEEEEeccCCCCccccc----cccccCCCCCeEEecCce---ecccCChhh------hhcccccceeEeecCCCcCcCc
Q 039327 56 QLQSLLLSSGYGDGVTFP----KFLYHQHDLEDVHLSHIK---MNGKFPNWL------LENNAKLETLFLINDSIGGPFR 122 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~---~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~ 122 (315)
.++.+++ ++|.+..... ..+++..+|+..++++-- ..+.++..+ .-.||+|++.++++|-+....|
T Consensus 31 ~~~evdL-SGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 31 ELVEVDL-SGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred ceeEEec-cCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 7888888 8888776543 344556777777776532 222333322 3567888888888887765544
Q ss_pred C----CCcCCCCccEEEcccCcCCCCCch-hhh----h--------cCCCceEEEeecCcCCCCCC----ccccCCCCCc
Q 039327 123 L----PIHPHRRLRFLDVSNNNFQGHIPV-EIG----D--------ILPSLFSFNISTNALHGSIP----SSFGNMNFLR 181 (315)
Q Consensus 123 ~----~l~~~~~L~~L~l~~~~~~~~~~~-~~~----~--------~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~ 181 (315)
. .+++...|.+|.+++|++. .+.. .+. . .-|.|+......|++..... ..+....+|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 2456677888888888765 2221 111 1 13456777776666552111 1223334667
Q ss_pred EEEccCccccCcCc-----hhhccCCCcccEEEccCCCCCCc----ccccccCCCCCCEEEcCCCcccccccccc-----
Q 039327 182 ILDLSSNQLTGEIP-----ERLAVGCVNLEFLALSNNNLKGH----MFCRNFNLANLRQLQLEDNRFIGEIPQSL----- 247 (315)
Q Consensus 182 ~L~l~~n~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----- 247 (315)
++.+..|.+....- ..++ .+.+|+.||++.|-++.. +..++..++.|++|.+.+|.++..-..++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 77777776652210 1122 256677777777765532 23344456667777777766653322211
Q ss_pred -ccCCCCcEEEccCCcc
Q 039327 248 -SKCSSLEGLYLNNNSL 263 (315)
Q Consensus 248 -~~~~~L~~L~l~~n~i 263 (315)
...|+|..|...+|.+
T Consensus 268 e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 268 EKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhcCCCccccccchhhh
Confidence 1235666666666643
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=5.9e-07 Score=83.04 Aligned_cols=134 Identities=20% Similarity=0.166 Sum_probs=76.4
Q ss_pred ccEEEEeccCCCCccccccccc-cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLY-HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL 134 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 134 (315)
+|++|++++...+....|..++ .+|.|++|.+++-.+...-...++.++|+|..||++++.++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 7777777333333333333333 3677888887776654322233356777788888887776642 556677777777
Q ss_pred EcccCcCCC-CCchhhhhcCCCceEEEeecCcCCCCCCc-------cccCCCCCcEEEccCccccCc
Q 039327 135 DVSNNNFQG-HIPVEIGDILPSLFSFNISTNALHGSIPS-------SFGNMNFLRILDLSSNQLTGE 193 (315)
Q Consensus 135 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~l~~~~~L~~L~l~~n~~~~~ 193 (315)
.+.+-.+.. ..-.+++. +.+|+.||++...... .+. .-..+|+|+.||.+++.+...
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 776655442 12235555 6777777777654331 111 112356666666666655533
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=2.9e-08 Score=83.17 Aligned_cols=137 Identities=22% Similarity=0.216 Sum_probs=87.2
Q ss_pred cCCCCccEEEcccCcC-CCCCchhhhhcCCCceEEEeecCcCCC--CCCccccCCCCCcEEEccCccccCcC-chhhccC
Q 039327 126 HPHRRLRFLDVSNNNF-QGHIPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMNFLRILDLSSNQLTGEI-PERLAVG 201 (315)
Q Consensus 126 ~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~ 201 (315)
..+.+|+.+..+++.. ++..-..+.....+|+.+.+.++..-+ .+...=.+++.|+.+++..+...... -.++..+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3467788888876543 322334556667889999998875320 11112256788999999887654222 1234457
Q ss_pred CCcccEEEccCCCCC-Ccccc----cccCCCCCCEEEcCCCccc-cccccccccCCCCcEEEccCCc
Q 039327 202 CVNLEFLALSNNNLK-GHMFC----RNFNLANLRQLQLEDNRFI-GEIPQSLSKCSSLEGLYLNNNS 262 (315)
Q Consensus 202 ~~~L~~L~l~~n~~~-~~~~~----~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~ 262 (315)
++.|+.+.++.|... +.... .-.....++.+.++++... +..-+.+..++.|+.+++-+++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 889999999977543 22111 1235667888999888754 3445667788899998887664
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=2.4e-06 Score=48.97 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=30.0
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccccc
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI 44 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 44 (315)
++|++|++++|.++ .++ ..+.++++|++|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCCCCc
Confidence 57888999999887 566 24888899999999988887643
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=3.1e-05 Score=66.58 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=9.1
Q ss_pred Ccccceeecccccccccc
Q 039327 27 HSRLKRLWAYNNEIKAEI 44 (315)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~ 44 (315)
++++++|++++|.++.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP 68 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP 68 (426)
T ss_pred hcCCCEEEeCCCCCcccC
Confidence 344555555555554444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=1.7e-05 Score=60.57 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=67.4
Q ss_pred CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc-ccccccCCCCcEEE
Q 039327 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI-PQSLSKCSSLEGLY 257 (315)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~ 257 (315)
....+++++|.+. .. ..+.+++.|.+|.+.+|+++.+.|..-..+++|..|.+.+|.+.... -..+..||+|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566777777765 32 22335777888888888887776666666777888888887776321 23456677788887
Q ss_pred ccCCccccccCCCCccccCCchhhcccCCCCEEeccc
Q 039327 258 LNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294 (315)
Q Consensus 258 l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 294 (315)
+-+|.+..-. +.. -..++++|+|+.||+..
T Consensus 120 ll~Npv~~k~----~YR---~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKK----NYR---LYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhccc----Cce---eEEEEecCcceEeehhh
Confidence 7777655311 000 12356777777777765
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.5e-06 Score=46.93 Aligned_cols=19 Identities=42% Similarity=0.606 Sum_probs=10.0
Q ss_pred hhcccCCCCEEecccCccC
Q 039327 280 EFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 280 ~l~~~~~L~~L~l~~n~~~ 298 (315)
.++++++|+.|++++|+++
T Consensus 19 ~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 19 ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp HGTTCTTSSEEEETSSCCS
T ss_pred hHhCCCCCCEEEecCCCCC
Confidence 3555555555555555554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=4.4e-06 Score=77.40 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=76.1
Q ss_pred cccceeecccccccc--cccccccCCCCccccEEEEeccCCCC-ccccccccccCCCCCeEEecCceecccCChhhhhcc
Q 039327 28 SRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGD-GVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENN 104 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 104 (315)
.+|++|+|++...-. .|..++. .+| .|++|.+ .+..+ .+.+.....++++|..||+|+++++.. .. .+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~-~LP--sL~sL~i-~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~G-IS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGT-MLP--SLRSLVI-SGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SG-ISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhh-hCc--ccceEEe-cCceecchhHHHHhhccCccceeecCCCCccCc--HH-Hhcc
Confidence 357777776654322 4444444 566 7777777 44433 233444455677777777777777633 23 3677
Q ss_pred cccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCCCCCch------hhhhcCCCceEEEeecCcCC
Q 039327 105 AKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHIPV------EIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 105 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~~ 167 (315)
++|++|.+.+-.+.. ..-..+-++++|+.||++..... ..+. +....+|+|+.||.+++.+.
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777777777655443 11223556777777777765543 2221 11223667777777776665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.95 E-value=2.9e-05 Score=56.53 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=5.0
Q ss_pred CCcCCCCccEEEcc
Q 039327 124 PIHPHRRLRFLDVS 137 (315)
Q Consensus 124 ~l~~~~~L~~L~l~ 137 (315)
+|..+++++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 30 AFSNCTSLKSINFP 43 (129)
T ss_dssp TTTT-TT-SEEEES
T ss_pred hccccccccccccc
Confidence 34444444444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=3.9e-05 Score=58.59 Aligned_cols=106 Identities=21% Similarity=0.362 Sum_probs=66.5
Q ss_pred CCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCch-hhccCCCcccE
Q 039327 129 RRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPE-RLAVGCVNLEF 207 (315)
Q Consensus 129 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~ 207 (315)
.+...+++++|.+. .++ . +..++.|.+|.+.+|+|+...|..-..+++++.|.+.+|++. .+.. .-.+.||.|+.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-N-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchh-hcc-c-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 45677788887764 222 2 223778888888888888655554455677888888888776 3221 11224777888
Q ss_pred EEccCCCCCCc---ccccccCCCCCCEEEcCCCc
Q 039327 208 LALSNNNLKGH---MFCRNFNLANLRQLQLEDNR 238 (315)
Q Consensus 208 L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~ 238 (315)
|.+-+|.+... -.-.+..+|+|+.||+..-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88877776542 12234467777777776543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.82 E-value=7.6e-05 Score=54.30 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=40.3
Q ss_pred CCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCC
Q 039327 124 PIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCV 203 (315)
Q Consensus 124 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 203 (315)
+|..+.+|+.+.+.. .+. .++...+..+.+++.+.+..+ +.......|..+++++.+.+.. .+. .++...+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 455555566665543 233 444444444555666665543 3323333455555555555543 222 33444444455
Q ss_pred cccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327 204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235 (315)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 235 (315)
.++.+++..+ +.......+..+ .++.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555433 333333334443 45555544
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00033 Score=60.43 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=80.7
Q ss_pred cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccC-cCCCCCchhhhhcCC
Q 039327 76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN-NFQGHIPVEIGDILP 154 (315)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 154 (315)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.-....|..+ .++|++|++++| .+. .+ .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL-------P~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL-------PE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc-------cc
Confidence 445788899999988776 5552 23468888888765434455444 357888888877 333 33 34
Q ss_pred CceEEEeecCcCCCCCCccccCC-CCCcEEEccCcccc--CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327 155 SLFSFNISTNALHGSIPSSFGNM-NFLRILDLSSNQLT--GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231 (315)
Q Consensus 155 ~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 231 (315)
+|+.|++.++... . +..+ ++|+.|.+.++... ...+. . -+++|++|++++|.... .|..+ +.+|+.
T Consensus 113 sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~ 181 (426)
T PRK15386 113 SVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNII-LPEKL--PESLQS 181 (426)
T ss_pred ccceEEeCCCCCc-c----cccCcchHhheecccccccccccccc-c--cCCcccEEEecCCCccc-Ccccc--cccCcE
Confidence 6777777665433 1 2222 24666666443211 01111 1 25678888888877543 23222 357888
Q ss_pred EEcCCCc
Q 039327 232 LQLEDNR 238 (315)
Q Consensus 232 L~l~~n~ 238 (315)
|.++.+.
T Consensus 182 L~ls~n~ 188 (426)
T PRK15386 182 ITLHIEQ 188 (426)
T ss_pred EEecccc
Confidence 8887653
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=1.3e-06 Score=69.73 Aligned_cols=101 Identities=18% Similarity=0.060 Sum_probs=78.6
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccc-cccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT-FPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~ 80 (315)
+.+.+.|+..||.+. .+. ...+||.|+.|.|+-|.|+++..- -.|++|+.|++ +.|.|.+. --..+++++
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~pl-----~rCtrLkElYL-RkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLAPL-----QRCTRLKELYL-RKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccchhH-----HHHHHHHHHHH-HhcccccHHHHHHHhcCc
Confidence 456788999999997 454 567899999999999999884432 44669999999 88888742 123578899
Q ss_pred CCCeEEecCceecccCChh----hhhcccccceeE
Q 039327 81 DLEDVHLSHIKMNGKFPNW----LLENNAKLETLF 111 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~ 111 (315)
+|++|++..|..-+..+.. ++..+|+|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999999876655432 257789999986
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=7.3e-05 Score=59.44 Aligned_cols=112 Identities=25% Similarity=0.233 Sum_probs=61.8
Q ss_pred cccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCC--CCCCcccccccCCCCCCEEEcCCCccccc-ccccccc
Q 039327 173 SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNN--NLKGHMFCRNFNLANLRQLQLEDNRFIGE-IPQSLSK 249 (315)
Q Consensus 173 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~ 249 (315)
....+..++.+++.+..++ .+.. +-.+++|+.|.++.| ++...+......+++|+++++++|++... .-..+..
T Consensus 38 l~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3344555666666666555 2221 224677888888877 44444444445567888888888877631 1122344
Q ss_pred CCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEeccc
Q 039327 250 CSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISD 294 (315)
Q Consensus 250 ~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 294 (315)
+++|..|++.+|....+. + .=-..|.-+++|+.|+-..
T Consensus 115 l~nL~~Ldl~n~~~~~l~--d-----yre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLD--D-----YREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccc--c-----HHHHHHHHhhhhccccccc
Confidence 556667777776654311 1 1112355566666665443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=1.4e-05 Score=63.97 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEE
Q 039327 80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSF 159 (315)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 159 (315)
.+.+.|++.||.+++. ++...++.|++|.|+-|+++.. ..+..|++|++|++..|.+.+--.......+++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3445556656555431 2235566666666666666532 2355566666666666655421112223335566666
Q ss_pred EeecCcCCCCCCc-----cccCCCCCcEEE
Q 039327 160 NISTNALHGSIPS-----SFGNMNFLRILD 184 (315)
Q Consensus 160 ~l~~n~~~~~~~~-----~l~~~~~L~~L~ 184 (315)
-|..|...+..+. .+..+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666555433322 234455555554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.19 E-value=1.5e-05 Score=71.84 Aligned_cols=63 Identities=25% Similarity=0.102 Sum_probs=32.2
Q ss_pred cCCCCCeEEecCce-ecccCChhhhhcccccceeEeecCC-CcCcC-cCCCcCCCCccEEEcccCc
Q 039327 78 HQHDLEDVHLSHIK-MNGKFPNWLLENNAKLETLFLINDS-IGGPF-RLPIHPHRRLRFLDVSNNN 140 (315)
Q Consensus 78 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~l~~~~~L~~L~l~~~~ 140 (315)
.+++|+.++++++. +++.....+...|++|++|.+.++. +++.. ......++.|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 45666666666655 4444444443446666666655554 33211 1223345556666666554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.00038 Score=55.47 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=71.4
Q ss_pred cCCCcccceeecccccccccccccccCCCCccccEEEEeccCC--CCccccccccccCCCCCeEEecCceecc--cCChh
Q 039327 24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGY--GDGVTFPKFLYHQHDLEDVHLSHIKMNG--KFPNW 99 (315)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~ 99 (315)
...+..|+.+++.+..++++.. +.+ +| +|++|.+ +.| .+.+.++.....+++|+++++++|++.. .+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~-~P~--Lp--~LkkL~l-sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p- 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN-FPK--LP--KLKKLEL-SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP- 111 (260)
T ss_pred cccccchhhhhhhccceeeccc-CCC--cc--hhhhhcc-cCCcccccccceehhhhCCceeEEeecCCccccccccch-
Confidence 3456677777777777666222 111 55 8999999 777 4444455555667999999999998863 2222
Q ss_pred hhhcccccceeEeecCCCcCcCc---CCCcCCCCccEEEcccC
Q 039327 100 LLENNAKLETLFLINDSIGGPFR---LPIHPHRRLRFLDVSNN 139 (315)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~ 139 (315)
...+++|..|++.+|..+...- ..|.-+++|++|+-...
T Consensus 112 -l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 -LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred -hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 3677888999999987664111 23555778887776443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.86 E-value=0.00015 Score=65.39 Aligned_cols=112 Identities=22% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCCCCeEEecCcee-cccCChhhhhcccccceeEeecC-CCcCcC----cCCCcCCCCccEEEcccCc-CCCCCchhhhh
Q 039327 79 QHDLEDVHLSHIKM-NGKFPNWLLENNAKLETLFLIND-SIGGPF----RLPIHPHRRLRFLDVSNNN-FQGHIPVEIGD 151 (315)
Q Consensus 79 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~ 151 (315)
++.|+.+.+.++.- ...--..+...++.|++|+++++ ...... ......+++|+.++++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46666666665532 21111222356667777776652 111111 1223345666667776665 44333333333
Q ss_pred cCCCceEEEeecCc-CC-CCCCccccCCCCCcEEEccCccc
Q 039327 152 ILPSLFSFNISTNA-LH-GSIPSSFGNMNFLRILDLSSNQL 190 (315)
Q Consensus 152 ~~~~L~~L~l~~n~-~~-~~~~~~l~~~~~L~~L~l~~n~~ 190 (315)
.+++|+.|.+.++. ++ ..+......++.|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35667777655554 33 11122234566677777766543
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.39 E-value=0.009 Score=26.31 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=5.0
Q ss_pred ccceeecccccccc
Q 039327 29 RLKRLWAYNNEIKA 42 (315)
Q Consensus 29 ~L~~L~l~~~~~~~ 42 (315)
+|+.|++++|.++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.012 Score=27.87 Aligned_cols=17 Identities=18% Similarity=0.093 Sum_probs=8.0
Q ss_pred cceeecccccccccccc
Q 039327 30 LKRLWAYNNEIKAEITE 46 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~ 46 (315)
|++|++++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44445555544444443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.0043 Score=47.70 Aligned_cols=82 Identities=24% Similarity=0.145 Sum_probs=46.1
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeeccccccc-c-cccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIK-A-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
.++.++.+++.|... -.+.+.+++.++.|.+.+|.-. + -..-+.. ..+ +|+.|+|+.+..|++..-..+.++++
T Consensus 102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~--~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAP--SLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcc-ccc--chheeeccCCCeechhHHHHHHHhhh
Confidence 456677777777622 2246667777777777766322 2 1111111 233 67777774466666555555666666
Q ss_pred CCeEEecC
Q 039327 82 LEDVHLSH 89 (315)
Q Consensus 82 L~~L~l~~ 89 (315)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666644
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.38 E-value=0.00016 Score=64.29 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=19.9
Q ss_pred CCeEEecCceecccCChhh---hhcccccceeEeecCCCcC
Q 039327 82 LEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGG 119 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 119 (315)
+.++++.+|.+.......+ ....+.|+.+++++|.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~ 129 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD 129 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc
Confidence 5566666666554332222 2444566666666665553
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.07 E-value=0.00012 Score=65.06 Aligned_cols=183 Identities=21% Similarity=0.156 Sum_probs=94.9
Q ss_pred cceEEeecCcccccCC---CcccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCccc----c
Q 039327 5 IEELYLSNNHFQIPIS---LEPLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVT----F 72 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~ 72 (315)
+.++.+.+|.+..... ...+..++.|+.|++++|.+.. +-..+ ..+...+++|++ ..+.++.. +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l---~~~~~~l~~L~l-~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGL---RLPQCLLQTLEL-VSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhc---ccchHHHHHHHh-hcccccccchHHH
Confidence 5566666666652211 1344556777777777777664 11111 122236666777 66666543 3
Q ss_pred ccccccCCCCCeEEecCceecc----cCChhh---hhcccccceeEeecCCCcCcC----cCCCcCCCC-ccEEEcccCc
Q 039327 73 PKFLYHQHDLEDVHLSHIKMNG----KFPNWL---LENNAKLETLFLINDSIGGPF----RLPIHPHRR-LRFLDVSNNN 140 (315)
Q Consensus 73 ~~~l~~~~~L~~L~l~~~~~~~----~~~~~~---~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~-L~~L~l~~~~ 140 (315)
.+.+....+++.++++.|.+.. .++..+ +....++++|.+.+|.++... ...+...++ +..+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 3344456677777777766531 111221 113456777777776655311 122334444 5556776666
Q ss_pred CCCCCchhhhhc---C-CCceEEEeecCcCCCCC----CccccCCCCCcEEEccCcccc
Q 039327 141 FQGHIPVEIGDI---L-PSLFSFNISTNALHGSI----PSSFGNMNFLRILDLSSNQLT 191 (315)
Q Consensus 141 ~~~~~~~~~~~~---~-~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 191 (315)
+.+.....+... + ..++.++++.|.++..- ...+..++.++++.+..|.+.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 653222222211 2 34567777777766322 223445556777777776655
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.92 E-value=0.063 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=11.8
Q ss_pred cccceeecccccccccccc
Q 039327 28 SRLKRLWAYNNEIKAEITE 46 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~ 46 (315)
++|++|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666665554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.92 E-value=0.063 Score=26.49 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=11.8
Q ss_pred cccceeecccccccccccc
Q 039327 28 SRLKRLWAYNNEIKAEITE 46 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~ 46 (315)
++|++|++++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666665554
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=0.017 Score=44.60 Aligned_cols=86 Identities=16% Similarity=0.021 Sum_probs=46.3
Q ss_pred CCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecc-cCChhhhhcccccceeEeecC-CCcCcCcCCCcCCC
Q 039327 52 APNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLIND-SIGGPFRLPIHPHR 129 (315)
Q Consensus 52 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~ 129 (315)
.+...++.++= +++.+..+.-+.+.+++.++.|.+.+|..-+ -..+.+-+-.++|+.|++++| .|++..-..+..++
T Consensus 98 ~~~~~IeaVDA-sds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 98 ADNVKIEAVDA-SDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred CCcceEEEEec-CCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 44456777777 6666666666666667777777776664321 111222223466666666655 24433333344555
Q ss_pred CccEEEccc
Q 039327 130 RLRFLDVSN 138 (315)
Q Consensus 130 ~L~~L~l~~ 138 (315)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 555555543
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.35 E-value=0.15 Score=24.52 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=6.5
Q ss_pred CCCCEEEcCCCcccc
Q 039327 227 ANLRQLQLEDNRFIG 241 (315)
Q Consensus 227 ~~L~~L~l~~n~~~~ 241 (315)
++|++|++++|.+++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.59 E-value=0.63 Score=22.95 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=12.4
Q ss_pred cccceeeccccccccccc
Q 039327 28 SRLKRLWAYNNEIKAEIT 45 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~ 45 (315)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777665
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.46 E-value=0.051 Score=43.05 Aligned_cols=86 Identities=16% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF 281 (315)
Q Consensus 202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l 281 (315)
....+.||++.|+.... ..-++.+..+..++++.|++. ..|..++....++.+++..|..+ ..|..+
T Consensus 41 ~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-----------~~p~s~ 107 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-----------QQPKSQ 107 (326)
T ss_pred cceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-----------hCCccc
Confidence 44566777776665432 223344555666777777665 55666666666666666665544 467778
Q ss_pred cccCCCCEEecccCccCCC
Q 039327 282 CQLYSLHILDISDNNISGS 300 (315)
Q Consensus 282 ~~~~~L~~L~l~~n~~~~~ 300 (315)
+..|+++.++..+|.+...
T Consensus 108 ~k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred cccCCcchhhhccCcchHH
Confidence 8888999999888887633
No 82
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.56 E-value=23 Score=31.71 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=9.0
Q ss_pred cccceeecccccccc
Q 039327 28 SRLKRLWAYNNEIKA 42 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~ 42 (315)
+.+++++++.|.+..
T Consensus 165 pr~r~~dls~npi~d 179 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGD 179 (553)
T ss_pred chhhhhccCCCcccc
Confidence 456666666665544
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.81 E-value=0.093 Score=41.65 Aligned_cols=94 Identities=13% Similarity=-0.016 Sum_probs=65.1
Q ss_pred cCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCC
Q 039327 18 PISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFP 97 (315)
Q Consensus 18 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 97 (315)
.+|+..+..+...+.||++.|.+...-..+.. + +.+..|++ +.+.+. ..|.+++....+.+++...|+.+ ..|
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~--~--t~~~rl~~-sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p 104 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSI--L--TRLVRLDL-SKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP 104 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHH--H--HHHHHHhc-cHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence 55656666777888888888876553333221 2 26777888 666655 67788888888888888777766 566
Q ss_pred hhhhhcccccceeEeecCCCcC
Q 039327 98 NWLLENNAKLETLFLINDSIGG 119 (315)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~ 119 (315)
.+ ++..+++++++..++.+..
T Consensus 105 ~s-~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 105 KS-QKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred cc-ccccCCcchhhhccCcchH
Confidence 66 3788888888888876553
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.44 E-value=2.3 Score=21.00 Aligned_cols=14 Identities=50% Similarity=0.676 Sum_probs=7.7
Q ss_pred CccceEEeecCccc
Q 039327 3 TSIEELYLSNNHFQ 16 (315)
Q Consensus 3 ~~L~~l~l~~~~~~ 16 (315)
++|++|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555553
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=71.83 E-value=2.4 Score=21.22 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=9.7
Q ss_pred CCCCEEecccCccC
Q 039327 285 YSLHILDISDNNIS 298 (315)
Q Consensus 285 ~~L~~L~l~~n~~~ 298 (315)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777775
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.07 E-value=2 Score=38.69 Aligned_cols=83 Identities=23% Similarity=0.153 Sum_probs=41.0
Q ss_pred CCCcccceeeccccccccc--ccccccCCCCccccEEEEeccCCCCccccccccc--cCCCCCeEEecCceecccCC---
Q 039327 25 FNHSRLKRLWAYNNEIKAE--ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLY--HQHDLEDVHLSHIKMNGKFP--- 97 (315)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~--- 97 (315)
.+.|.+..+++++|.+..+ ..++.. ..| +|++|+| ++|.........+. +...|+.|.+.||.+...+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq-~ap--klk~L~L-S~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQ-IAP--KLKTLDL-SHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHH-hcc--hhheeec-ccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 3566677777777765431 011111 244 7777777 65511111111122 22447777777777643221
Q ss_pred ---hhhhhcccccceeE
Q 039327 98 ---NWLLENNAKLETLF 111 (315)
Q Consensus 98 ---~~~~~~~~~L~~L~ 111 (315)
..+...+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 12234567776654
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.63 E-value=20 Score=32.11 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCCEEEcCCCccccccc---cccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 228 NLRQLQLEDNRFIGEIP---QSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 228 ~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
-+..+.++.+....... ....+-+.+..|++++|...... ...+|.++..--+++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~g------ap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGG------APPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCC------CCcCccccCCCCccCCCCCCCCCcc
Confidence 35555555555442221 12233455666666666544211 1133444444445555555555443
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.60 E-value=2.8 Score=37.82 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=16.0
Q ss_pred CCCCcEEEccCccccCcCc--hhhccCCCcccEEEccCC
Q 039327 177 MNFLRILDLSSNQLTGEIP--ERLAVGCVNLEFLALSNN 213 (315)
Q Consensus 177 ~~~L~~L~l~~n~~~~~~~--~~~~~~~~~L~~L~l~~n 213 (315)
.+.+..+++++|++. .+. ..+....|.|++|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 344555555555443 111 112223455555555555
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.53 E-value=4.1 Score=19.82 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=5.4
Q ss_pred CccceEEeecC
Q 039327 3 TSIEELYLSNN 13 (315)
Q Consensus 3 ~~L~~l~l~~~ 13 (315)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44455555544
Done!