Query 039327
Match_columns 315
No_of_seqs 181 out of 2820
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-38 3.5E-43 299.9 24.3 250 3-261 294-548 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-38 4.3E-43 299.3 23.8 299 2-304 317-723 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 4.3E-35 1.5E-39 261.5 25.3 294 3-315 32-327 (477)
4 3v47_A TOLL-like receptor 5B a 100.0 1.5E-35 5E-40 263.1 20.9 296 3-315 30-402 (455)
5 4eco_A Uncharacterized protein 100.0 1.4E-35 4.8E-40 272.9 21.2 302 1-315 247-594 (636)
6 3v47_A TOLL-like receptor 5B a 100.0 3E-35 1E-39 261.1 21.1 287 1-303 52-413 (455)
7 4eco_A Uncharacterized protein 100.0 2.4E-35 8.1E-40 271.4 20.3 301 1-315 204-573 (636)
8 3t6q_A CD180 antigen; protein- 100.0 1E-33 3.5E-38 259.9 26.3 137 125-263 274-412 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 7.4E-34 2.5E-38 266.5 24.4 297 2-315 447-834 (876)
10 3t6q_A CD180 antigen; protein- 100.0 6.1E-34 2.1E-38 261.4 23.3 293 4-315 255-554 (606)
11 2id5_A Lingo-1, leucine rich r 100.0 2.6E-33 8.8E-38 250.1 21.7 281 1-299 54-334 (477)
12 4ecn_A Leucine-rich repeat pro 100.0 1.4E-33 4.8E-38 264.7 20.8 279 19-314 440-782 (876)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-33 4E-38 259.5 19.3 110 2-118 55-166 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-32 5.9E-37 247.3 25.2 138 175-315 321-475 (520)
15 3o6n_A APL1; leucine-rich repe 100.0 1.9E-32 6.6E-37 238.2 24.5 282 2-315 44-346 (390)
16 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-33 3E-37 253.7 22.3 305 1-315 78-552 (606)
17 2z81_A CD282 antigen, TOLL-lik 100.0 6.5E-33 2.2E-37 251.7 20.9 133 3-142 26-161 (549)
18 4fmz_A Internalin; leucine ric 100.0 8.5E-32 2.9E-36 230.6 26.7 285 2-315 43-340 (347)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-32 2.4E-36 245.5 26.0 297 3-315 52-504 (562)
20 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-32 1.6E-36 257.1 24.7 296 2-314 23-368 (844)
21 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-32 8E-37 230.5 19.1 243 56-314 51-297 (313)
22 2z63_A TOLL-like receptor 4, v 100.0 2.8E-32 9.5E-37 248.6 20.8 140 174-315 369-525 (570)
23 1ogq_A PGIP-2, polygalacturona 100.0 1E-32 3.4E-37 232.7 15.9 251 28-299 50-306 (313)
24 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-31 3.9E-36 249.5 24.0 305 2-315 48-437 (680)
25 3oja_B Anopheles plasmodium-re 100.0 2.4E-31 8.2E-36 243.3 24.4 288 2-315 50-352 (597)
26 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-31 5.1E-36 241.2 22.5 295 3-315 21-451 (520)
27 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-31 1.4E-35 245.7 24.3 285 3-295 25-363 (680)
28 2z63_A TOLL-like receptor 4, v 100.0 9.6E-32 3.3E-36 245.1 19.3 132 4-142 29-162 (570)
29 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-31 6.5E-36 253.0 21.9 281 1-298 46-375 (844)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-30 3.6E-35 237.7 25.0 293 3-315 31-480 (562)
31 1xku_A Decorin; proteoglycan, 100.0 1.7E-30 5.9E-35 220.9 23.7 283 4-315 32-326 (330)
32 1o6v_A Internalin A; bacterial 100.0 9.2E-30 3.2E-34 226.3 28.3 284 2-315 67-382 (466)
33 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-30 4.2E-35 222.0 20.8 282 4-315 34-327 (332)
34 2z81_A CD282 antigen, TOLL-lik 100.0 4E-31 1.4E-35 239.9 18.9 161 1-168 48-210 (549)
35 1xku_A Decorin; proteoglycan, 100.0 6.3E-30 2.2E-34 217.4 24.7 251 28-305 31-283 (330)
36 4fmz_A Internalin; leucine ric 100.0 1.2E-29 3.9E-34 217.3 25.9 268 2-298 65-346 (347)
37 2ft3_A Biglycan; proteoglycan, 100.0 4E-30 1.4E-34 218.8 21.6 259 29-315 34-301 (332)
38 1o6v_A Internalin A; bacterial 100.0 1.7E-29 5.7E-34 224.6 25.9 284 2-315 45-360 (466)
39 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-29 8.2E-34 222.3 23.6 241 2-278 41-281 (457)
40 3o6n_A APL1; leucine-rich repe 100.0 2.1E-29 7E-34 219.1 21.9 266 2-299 68-353 (390)
41 4g8a_A TOLL-like receptor 4; l 100.0 6.6E-29 2.3E-33 229.0 24.9 133 4-142 53-186 (635)
42 2z80_A TOLL-like receptor 2, v 100.0 1.7E-29 6E-34 216.7 19.2 277 3-302 31-318 (353)
43 3oja_B Anopheles plasmodium-re 100.0 4.5E-29 1.5E-33 228.3 21.4 268 2-299 74-359 (597)
44 4fcg_A Uncharacterized protein 100.0 1.9E-28 6.3E-33 207.8 21.9 225 56-298 82-314 (328)
45 3zyj_A Leucine-rich repeat-con 100.0 2.6E-28 9.1E-33 215.4 21.9 248 29-298 44-292 (440)
46 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.9E-33 207.5 18.3 247 6-264 10-261 (306)
47 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-28 7.1E-33 203.8 19.5 224 31-264 14-238 (285)
48 4fcg_A Uncharacterized protein 100.0 2.8E-28 9.4E-33 206.8 20.1 227 27-265 80-315 (328)
49 3zyi_A Leucine-rich repeat-con 100.0 3.3E-28 1.1E-32 215.5 21.2 248 29-298 55-303 (452)
50 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-27 3.9E-32 211.6 24.5 263 1-299 62-353 (457)
51 2z66_A Variable lymphocyte rec 100.0 2.1E-28 7.3E-33 205.8 16.4 249 31-300 10-263 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.1E-28 3.9E-33 211.6 14.3 275 24-315 27-308 (353)
53 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-27 1.1E-31 217.8 23.1 298 1-315 74-574 (635)
54 1wwl_A Monocyte differentiatio 100.0 1.1E-29 3.9E-34 214.1 5.4 250 24-299 39-310 (312)
55 1z7x_W Ribonuclease inhibitor; 100.0 7.8E-31 2.7E-35 233.0 -2.1 237 2-240 27-297 (461)
56 3zyi_A Leucine-rich repeat-con 100.0 9.9E-27 3.4E-31 206.0 22.2 242 56-315 55-297 (452)
57 1jl5_A Outer protein YOPM; leu 100.0 3E-26 1E-30 202.4 25.0 261 4-306 92-380 (454)
58 3zyj_A Leucine-rich repeat-con 100.0 1.4E-26 4.8E-31 204.3 22.3 247 5-264 45-292 (440)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-28 5.2E-33 207.6 7.5 268 5-304 12-282 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 8.9E-31 191.1 20.7 227 58-301 14-241 (285)
61 1jl5_A Outer protein YOPM; leu 99.9 1.6E-26 5.4E-31 204.2 19.9 208 3-240 11-250 (454)
62 1z7x_W Ribonuclease inhibitor; 99.9 3.6E-29 1.2E-33 222.3 1.9 291 2-300 55-413 (461)
63 1wwl_A Monocyte differentiatio 99.9 2.6E-28 9E-33 205.7 7.0 246 3-265 43-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-28 1.8E-32 204.3 7.6 254 30-313 12-267 (317)
65 3oja_A Leucine-rich immune mol 99.9 3.5E-27 1.2E-31 210.3 11.1 237 26-293 32-270 (487)
66 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-25 2.2E-29 199.8 21.5 254 4-305 41-304 (622)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4.7E-24 1.6E-28 194.1 26.1 241 28-315 40-291 (622)
68 2o6q_A Variable lymphocyte rec 99.9 2.9E-24 1E-28 177.2 20.3 203 29-241 17-219 (270)
69 2o6q_A Variable lymphocyte rec 99.9 5.7E-24 1.9E-28 175.5 21.0 202 56-264 17-218 (270)
70 2z62_A TOLL-like receptor 4, v 99.9 1.3E-24 4.3E-29 180.1 17.0 221 33-264 12-237 (276)
71 3oja_A Leucine-rich immune mol 99.9 1.8E-25 6E-30 199.3 12.1 229 56-311 35-265 (487)
72 1p9a_G Platelet glycoprotein I 99.9 9.7E-24 3.3E-28 175.6 19.5 207 21-241 3-209 (290)
73 2z62_A TOLL-like receptor 4, v 99.9 9.7E-24 3.3E-28 174.7 18.9 222 8-242 12-239 (276)
74 3rfs_A Internalin B, repeat mo 99.9 3E-24 1E-28 177.3 15.3 176 56-239 42-217 (272)
75 1p9a_G Platelet glycoprotein I 99.9 9.8E-24 3.4E-28 175.6 17.8 198 56-264 11-208 (290)
76 2xwt_C Thyrotropin receptor; s 99.9 2.2E-23 7.4E-28 168.9 15.4 206 39-261 22-236 (239)
77 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.6E-28 173.4 13.8 227 5-252 21-247 (272)
78 2ca6_A RAN GTPase-activating p 99.9 2.5E-25 8.6E-30 193.1 2.5 234 23-264 27-316 (386)
79 4glp_A Monocyte differentiatio 99.9 1.8E-23 6.1E-28 176.0 12.1 226 56-299 65-308 (310)
80 2ast_B S-phase kinase-associat 99.9 1.6E-24 5.4E-29 184.6 5.6 255 29-306 48-314 (336)
81 3ogk_B Coronatine-insensitive 99.9 4.5E-25 1.5E-29 201.9 -0.2 127 176-302 376-530 (592)
82 4glp_A Monocyte differentiatio 99.9 2.1E-22 7.1E-27 169.5 15.9 222 79-315 63-301 (310)
83 3ogk_B Coronatine-insensitive 99.9 1.3E-24 4.4E-29 198.9 1.8 110 176-295 434-548 (592)
84 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.7E-29 187.1 2.3 262 30-302 11-320 (386)
85 2xwt_C Thyrotropin receptor; s 99.9 4.2E-22 1.4E-26 161.3 15.1 197 80-295 31-236 (239)
86 1h6u_A Internalin H; cell adhe 99.9 9.4E-22 3.2E-26 165.2 17.7 190 56-265 42-231 (308)
87 3goz_A Leucine-rich repeat-con 99.9 4.3E-24 1.5E-28 183.6 3.6 254 7-265 2-298 (362)
88 3goz_A Leucine-rich repeat-con 99.9 5.9E-24 2E-28 182.8 4.2 235 5-241 24-298 (362)
89 4ay9_X Follicle-stimulating ho 99.9 2.8E-22 9.4E-27 171.6 14.3 239 31-294 12-255 (350)
90 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.7E-28 178.8 5.4 247 4-265 48-307 (336)
91 3m19_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 158.8 17.4 178 28-215 14-191 (251)
92 3m19_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 157.2 17.5 179 56-241 15-193 (251)
93 1h6u_A Internalin H; cell adhe 99.9 3.3E-21 1.1E-25 161.8 16.0 195 24-241 37-231 (308)
94 2p1m_B Transport inhibitor res 99.9 4E-24 1.4E-28 195.7 -2.4 50 266-315 461-513 (594)
95 2o6s_A Variable lymphocyte rec 99.9 1.1E-20 3.8E-25 149.6 13.9 133 105-239 28-160 (208)
96 4ay9_X Follicle-stimulating ho 99.8 5.1E-20 1.7E-24 157.5 15.3 237 58-315 12-253 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.5E-24 143.4 14.8 177 108-306 10-186 (208)
98 2p1m_B Transport inhibitor res 99.8 2.7E-22 9.2E-27 183.6 -1.1 189 102-301 286-522 (594)
99 3cvr_A Invasion plasmid antige 99.8 2.9E-19 1E-23 160.8 15.3 178 56-265 60-244 (571)
100 1h6t_A Internalin B; cell adhe 99.8 8.8E-19 3E-23 145.8 16.9 190 56-265 25-214 (291)
101 3cvr_A Invasion plasmid antige 99.8 5.2E-19 1.8E-23 159.2 15.4 187 29-250 60-253 (571)
102 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.2E-23 143.5 14.8 192 28-242 24-215 (291)
103 3e6j_A Variable lymphocyte rec 99.8 3.6E-18 1.2E-22 137.1 15.1 154 30-193 21-174 (229)
104 3e6j_A Variable lymphocyte rec 99.8 5.2E-18 1.8E-22 136.2 16.0 152 107-264 21-172 (229)
105 1m9s_A Internalin B; cell inva 99.8 5.8E-18 2E-22 153.9 17.7 191 56-266 22-212 (605)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 3.3E-18 1.1E-22 136.4 14.1 154 107-264 13-166 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 3.7E-18 1.3E-22 136.1 14.2 152 31-191 14-165 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.7E-23 136.8 13.3 156 30-194 13-169 (220)
109 4ezg_A Putative uncharacterize 99.8 2.7E-18 9.2E-23 134.6 12.9 154 24-191 40-194 (197)
110 2v9t_B SLIT homolog 2 protein 99.8 6.5E-18 2.2E-22 134.7 14.5 152 83-240 14-165 (220)
111 1m9s_A Internalin B; cell inva 99.8 7.7E-18 2.6E-22 153.1 16.6 194 27-243 20-213 (605)
112 2xot_A Amphoterin-induced prot 99.8 2.1E-18 7.3E-23 148.0 11.9 132 56-190 65-201 (361)
113 4ezg_A Putative uncharacterize 99.8 7E-18 2.4E-22 132.2 13.5 151 128-298 43-194 (197)
114 2xot_A Amphoterin-induced prot 99.8 2.9E-18 9.9E-23 147.2 12.2 178 57-241 20-203 (361)
115 1xeu_A Internalin C; cellular 99.8 1.8E-18 6.2E-23 141.7 10.2 168 79-264 18-185 (263)
116 3sb4_A Hypothetical leucine ri 99.8 1.4E-18 4.9E-23 147.2 8.8 282 3-314 25-327 (329)
117 3sb4_A Hypothetical leucine ri 99.7 1.9E-17 6.6E-22 140.3 11.7 194 104-315 100-304 (329)
118 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.5E-24 163.7 -3.5 105 155-265 442-547 (567)
119 1xeu_A Internalin C; cellular 99.7 3.8E-17 1.3E-21 133.9 10.3 149 76-240 37-185 (263)
120 1dce_A Protein (RAB geranylger 99.7 6.8E-19 2.3E-23 159.1 -1.2 203 77-315 346-567 (567)
121 4b8c_D Glucose-repressible alc 99.7 9.9E-18 3.4E-22 156.0 4.1 196 28-237 173-369 (727)
122 4fdw_A Leucine rich hypothetic 99.7 6.9E-15 2.3E-19 127.4 19.9 248 22-297 130-382 (401)
123 2ell_A Acidic leucine-rich nuc 99.7 7.2E-16 2.5E-20 117.5 12.0 136 154-303 24-164 (168)
124 2ell_A Acidic leucine-rich nuc 99.7 1.9E-15 6.6E-20 115.1 13.4 134 79-217 23-161 (168)
125 4fdw_A Leucine rich hypothetic 99.7 7.4E-15 2.5E-19 127.2 18.5 257 28-314 113-376 (401)
126 1w8a_A SLIT protein; signaling 99.6 1.9E-15 6.6E-20 117.7 12.7 129 131-264 10-139 (192)
127 1w8a_A SLIT protein; signaling 99.6 6.6E-15 2.3E-19 114.7 12.4 131 108-243 11-142 (192)
128 2wfh_A SLIT homolog 2 protein 99.6 9.6E-15 3.3E-19 113.8 13.0 127 108-240 13-139 (193)
129 2je0_A Acidic leucine-rich nuc 99.6 2.8E-15 9.5E-20 111.9 9.6 128 153-293 16-148 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 9E-20 112.0 9.4 109 178-298 17-126 (149)
131 2wfh_A SLIT homolog 2 protein 99.6 6.1E-15 2.1E-19 114.9 11.8 127 31-167 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.6 2.5E-14 8.7E-19 109.9 13.9 127 132-263 10-136 (177)
133 4b8c_D Glucose-repressible alc 99.6 2.2E-16 7.5E-21 146.9 2.7 131 56-193 225-356 (727)
134 2o6r_A Variable lymphocyte rec 99.6 9.7E-15 3.3E-19 112.2 11.5 129 30-167 9-137 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.9E-19 110.7 8.7 134 125-264 15-153 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 108.7 10.3 129 153-298 18-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 4.3E-16 1.5E-20 122.1 -3.2 110 125-241 44-154 (198)
138 4fs7_A Uncharacterized protein 99.5 1.1E-12 3.8E-17 113.8 17.5 283 2-313 70-393 (394)
139 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 121.8 -4.6 108 102-216 45-153 (198)
140 4fs7_A Uncharacterized protein 99.4 6.5E-12 2.2E-16 108.9 17.5 263 1-290 92-393 (394)
141 3g39_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 101.1 9.6 106 29-142 10-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 100.1 10.4 105 30-142 14-118 (174)
143 3g39_A Variable lymphocyte rec 99.4 2.5E-12 8.4E-17 97.9 11.3 107 131-242 11-117 (170)
144 2r9u_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 97.1 11.1 105 132-241 15-119 (174)
145 3un9_A NLR family member X1; l 99.3 3.7E-14 1.3E-18 121.7 -2.5 161 104-265 71-253 (372)
146 4gt6_A Cell surface protein; l 99.3 2E-10 6.8E-15 99.5 19.2 280 4-314 65-384 (394)
147 3un9_A NLR family member X1; l 99.3 1.5E-13 5E-18 118.0 -2.5 134 56-191 73-224 (372)
148 4gt6_A Cell surface protein; l 99.2 7.2E-10 2.5E-14 96.0 19.3 267 1-297 85-390 (394)
149 4h09_A Hypothetical leucine ri 99.1 1.7E-08 5.7E-13 86.9 22.5 138 153-306 216-353 (379)
150 4h09_A Hypothetical leucine ri 99.1 1.2E-08 4.2E-13 87.7 20.2 130 125-260 213-342 (379)
151 2ifg_A High affinity nerve gro 99.1 5.9E-10 2E-14 94.9 9.9 105 132-241 11-117 (347)
152 2ifg_A High affinity nerve gro 99.1 7.7E-10 2.6E-14 94.1 10.3 103 158-264 12-116 (347)
153 2ra8_A Uncharacterized protein 99.0 1E-09 3.4E-14 93.5 8.4 102 56-162 108-227 (362)
154 2ra8_A Uncharacterized protein 99.0 2.2E-09 7.6E-14 91.3 9.1 159 102-264 136-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 8.3E-09 2.8E-13 79.4 2.2 115 23-142 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 9.5E-09 3.3E-13 79.0 1.6 112 54-167 35-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 1.2E-07 4E-12 71.4 3.7 85 54-140 60-150 (176)
158 3e4g_A ATP synthase subunit S, 98.3 3.1E-07 1.1E-11 69.0 3.2 83 29-116 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 1.4E-06 4.7E-11 70.5 5.7 62 201-264 168-233 (267)
160 3rw6_A Nuclear RNA export fact 98.1 2.4E-06 8.1E-11 69.1 5.0 80 102-184 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 7.2E-06 2.5E-10 62.8 0.6 110 55-166 41-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 1.1E-05 3.9E-10 61.7 1.1 114 23-141 36-169 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0015 5.3E-08 46.5 4.9 57 31-94 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.011 3.6E-07 42.0 6.1 36 204-239 32-67 (130)
165 2lz0_A Uncharacterized protein 64.5 9.6 0.00033 25.1 4.2 38 197-235 14-51 (100)
166 2lz0_A Uncharacterized protein 57.5 15 0.00052 24.1 4.2 49 212-261 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-38 Score=299.87 Aligned_cols=250 Identities=32% Similarity=0.389 Sum_probs=110.5
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccc-cccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
++|++|++++|.+.+..| ..+.++++|++|++++|.+.+ +|.. +.+ .+ +|++|++ ++|.+.+.+|..+.+++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~--l~--~L~~L~L-s~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLK--MR--GLKVLDL-SFNEFSGELPESLTNLS 367 (768)
T ss_dssp TTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTT--CT--TCCEEEC-CSSEEEECCCTTHHHHT
T ss_pred CcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhc--CC--CCCEEeC-cCCccCccccHHHHhhh
Confidence 344444444444443333 234444444444444444432 3322 221 22 4444444 44444433443333332
Q ss_pred -CCCeEEecCceecccCChhhhhc--ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327 81 -DLEDVHLSHIKMNGKFPNWLLEN--NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF 157 (315)
Q Consensus 81 -~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 157 (315)
+|++|++++|.+++.+|..+ .. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|+
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~ 445 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLR 445 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTT-TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCC
T ss_pred cCCcEEEccCCCcCCCcChhh-hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCC
Confidence 33333333333332222221 11 233444444444444344444444555555555555554444444443 44555
Q ss_pred EEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327 158 SFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237 (315)
Q Consensus 158 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 237 (315)
.|++++|.+++..|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 555555555444444444555555555555555444444333 3445555555555554444444444555555555555
Q ss_pred ccccccccccccCCCCcEEEccCC
Q 039327 238 RFIGEIPQSLSKCSSLEGLYLNNN 261 (315)
Q Consensus 238 ~~~~~~~~~~~~~~~L~~L~l~~n 261 (315)
.+.+.+|..++.+++|+.|++++|
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSS
T ss_pred cccCcCCHHHcCCCCCCEEECCCC
Confidence 554444444444444444444444
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-38 Score=299.28 Aligned_cols=299 Identities=29% Similarity=0.415 Sum_probs=187.5
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCC-----------------------CCcccc
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLT-----------------------APNFQL 57 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-----------------------~~~~~L 57 (315)
+++|++|++++|.+.+.+|...+.++++|++|++++|.+++ +|..+..+. .+..+|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 56677777777777666665446677777777777776653 444333200 012256
Q ss_pred EEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcc
Q 039327 58 QSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS 137 (315)
Q Consensus 58 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 137 (315)
++|++ ++|.+.+..|..+.++++|+.|++++|.+++.+|..+ +.+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 397 ~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 397 QELYL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CEEEC-CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cEEEC-CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 66666 6666666666666667777777777777766666654 666777777777777666666666667777777777
Q ss_pred cCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCC
Q 039327 138 NNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG 217 (315)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 217 (315)
+|.+.+.+|..+.. +++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+
T Consensus 475 ~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 475 FNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp SSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEES
T ss_pred CCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCC
Confidence 77766666666554 66777777777777666666677777777777777777666666554 46677777777666543
Q ss_pred ccccc----------------------------------------------------------------------ccCCC
Q 039327 218 HMFCR----------------------------------------------------------------------NFNLA 227 (315)
Q Consensus 218 ~~~~~----------------------------------------------------------------------~~~~~ 227 (315)
..|.. +..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 33221 22345
Q ss_pred CCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhcccCCCCEEecc
Q 039327 228 NLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDIS 293 (315)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~ 293 (315)
.|+.|++++|.+++.+|..++.++.|+.|++++|.+.. +++++|+++|.+|..+..+++|+.|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 56667777777766666666777777777776665542 4455555555555555555555555555
Q ss_pred cCccCCCCCCC
Q 039327 294 DNNISGSLPSC 304 (315)
Q Consensus 294 ~n~~~~~~~~~ 304 (315)
+|++++.+|+.
T Consensus 713 ~N~l~g~iP~~ 723 (768)
T 3rgz_A 713 NNNLSGPIPEM 723 (768)
T ss_dssp SSEEEEECCSS
T ss_pred CCcccccCCCc
Confidence 55555555543
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=261.55 Aligned_cols=294 Identities=19% Similarity=0.157 Sum_probs=249.2
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++++|++++|.+.+..+ ..+.++++|++|+|++|.++++ |..+.+ ++ +|++|++ ++|.+....+..+.++++
T Consensus 32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNN--LF--NLRTLGL-RSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhC--Cc--cCCEEEC-CCCcCCccCcccccCCCC
Confidence 478999999999985444 6899999999999999999985 555554 55 9999999 889988666667889999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus 106 L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 106 LTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp CCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEE
T ss_pred CCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeC
Confidence 999999999998766665 489999999999999998888889999999999999999998 677665556899999999
Q ss_pred ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
.+|.+.+..+..+..+++|++|++++|...+.++...+. ..+|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 999998777778899999999999998877677777664 5689999999999988766778889999999999999987
Q ss_pred ccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
..+..+..+++|+.|++++|++.. ..+.+|..+++|+.|++++|.+++..+..+. +++|+.|++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAV----------VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSE----------ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cChhhccccccCCEEECCCCccce----------ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 777788889999999999988775 3367788888888888888888866666666 788888764
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-35 Score=263.08 Aligned_cols=296 Identities=18% Similarity=0.139 Sum_probs=187.7
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cc-cccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
++|++|++++|.+.+..+ ..+.++++|++|++++|.+.. ++ ..+.+ ++ +|++|++ ++|.+.+..|..+.+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LS--SLIILKL-DYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTT--CT--TCCEEEC-TTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccc--cc--cCCEEeC-CCCccCccChhhccCcc
Confidence 568899999998875545 578889999999999988864 43 33443 55 8999999 88888877788888899
Q ss_pred CCCeEEecCceecccCChh-hhhcccccceeEeecCCCcCcCcCC-CcCCCCccEEEcccCcCCCCCchhhhhc------
Q 039327 81 DLEDVHLSHIKMNGKFPNW-LLENNAKLETLFLINDSIGGPFRLP-IHPHRRLRFLDVSNNNFQGHIPVEIGDI------ 152 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~------ 152 (315)
+|++|++++|.+++..+.. .++.+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+...
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9999999999887644432 2477888999999999888766655 7888889999998888875545444321
Q ss_pred ---------------------------CCCceEEEeecCcCCCCCCccccC-----------------------------
Q 039327 153 ---------------------------LPSLFSFNISTNALHGSIPSSFGN----------------------------- 176 (315)
Q Consensus 153 ---------------------------~~~L~~L~l~~n~~~~~~~~~l~~----------------------------- 176 (315)
+++|++|++++|.+++..|..+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 134555555554443222211110
Q ss_pred ----------CCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccc
Q 039327 177 ----------MNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQS 246 (315)
Q Consensus 177 ----------~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 246 (315)
.++|+.+++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred CcccccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 123444444444444222222 223445555555555554444444445555555555555554444444
Q ss_pred cccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 247 LSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 247 ~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
+..+++|++|++++|++ .+..|.++..+++|+.|++++|++++..+..+. +++|++|++
T Consensus 343 ~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHI----------RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp GTTCTTCCEEECCSSCC----------CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred hcCcccCCEEECCCCcc----------cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 44555555555555444 445567777788888888888888755555555 777777764
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-35 Score=272.88 Aligned_cols=302 Identities=18% Similarity=0.184 Sum_probs=239.8
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeeccccc-ccc--cccccccC----CCCccccEEEEeccCCCCccccc
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNE-IKA--EITESHSL----TAPNFQLQSLLLSSGYGDGVTFP 73 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~ 73 (315)
++++|++|++++|.+.+.+| ..+.++++|++|++++|. +++ +|..+.++ ..+ +|++|++ ++|.+. .+|
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~--~L~~L~L-~~n~l~-~ip 321 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE--KIQIIYI-GYNNLK-TFP 321 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG--TCCEEEC-CSSCCS-SCC
T ss_pred ccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC--CCCEEEC-CCCcCC-ccC
Confidence 37899999999999998999 689999999999999998 885 78776541 014 8999999 889988 788
Q ss_pred c--ccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCC-ccEEEcccCcCCCCCchhhh
Q 039327 74 K--FLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR-LRFLDVSNNNFQGHIPVEIG 150 (315)
Q Consensus 74 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~ 150 (315)
. .+.++++|++|++++|.+++.+| . ++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+.
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 8 89999999999999999998888 4 488899999999999887 67778888888 999999999888 7877654
Q ss_pred hc-CCCceEEEeecCcCCCCCCcccc-------CCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327 151 DI-LPSLFSFNISTNALHGSIPSSFG-------NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR 222 (315)
Q Consensus 151 ~~-~~~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 222 (315)
.. +++|++|++++|.+++..|..+. .+++|++|++++|.+. .+|...+..+++|+.|++++|.+.......
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 31 23788888888888877777776 6778888888888887 777776666778888888888877443333
Q ss_pred ccCC-------CCCCEEEcCCCccccccccccc--cCCCCcEEEccCCcccc-------------ccC------CCCccc
Q 039327 223 NFNL-------ANLRQLQLEDNRFIGEIPQSLS--KCSSLEGLYLNNNSLSD-------------ITM------PKNHLE 274 (315)
Q Consensus 223 ~~~~-------~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~i~~-------------l~l------~~~~l~ 274 (315)
+... ++|+.|++++|.++ .+|..+. .+++|++|++++|++.. +++ ++|.+.
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 3322 27777888877777 5666665 77777788777776654 334 567788
Q ss_pred cCCchhhcccCCCCEEecccCccCCCCCCCccccccceecC
Q 039327 275 GPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYIKKVHL 315 (315)
Q Consensus 275 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~l~l 315 (315)
+.+|.+++.+++|+.|++++|.+ +.+|..+. ++|+.|++
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~L 594 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDI 594 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEEC
T ss_pred ccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEEC
Confidence 88999999999999999999999 47787755 78888765
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-35 Score=261.09 Aligned_cols=287 Identities=20% Similarity=0.138 Sum_probs=241.1
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccc--cc
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKF--LY 77 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~ 77 (315)
++++|++|++++|.+.+.++...+.++++|++|++++|.++++ |..+.+ ++ +|++|++ ++|.+.+..+.. +.
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG--LA--NLEVLTL-TQCNLDGAVLSGNFFK 126 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT--CT--TCCEEEC-TTSCCBTHHHHSSTTT
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC--cc--cCCEEeC-CCCCCCccccCccccc
Confidence 4789999999999997677667899999999999999999885 666654 55 9999999 999998755544 88
Q ss_pred cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcC------------------------------
Q 039327 78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHP------------------------------ 127 (315)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------------------------------ 127 (315)
.+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+..+..
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 99999999999999998778775689999999999999988766655543
Q ss_pred ----CCCccEEEcccCcCCCCCchhhhhc--------------------------------------CCCceEEEeecCc
Q 039327 128 ----HRRLRFLDVSNNNFQGHIPVEIGDI--------------------------------------LPSLFSFNISTNA 165 (315)
Q Consensus 128 ----~~~L~~L~l~~~~~~~~~~~~~~~~--------------------------------------~~~L~~L~l~~n~ 165 (315)
+++|++|++++|.+.+..|..+... .++|++|++++|.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 3678889998887764444333221 2579999999999
Q ss_pred CCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccccc
Q 039327 166 LHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQ 245 (315)
Q Consensus 166 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 245 (315)
+++..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 99888888999999999999999998444444 44699999999999999988888999999999999999999988889
Q ss_pred ccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCC
Q 039327 246 SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPS 303 (315)
Q Consensus 246 ~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 303 (315)
.+..+++|++|++++|+++.+. +..+..+++|+.|++++|++++..|.
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSVP----------DGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hccccccccEEECCCCccccCC----------HhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999999999999888532 45678999999999999999988774
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-35 Score=271.38 Aligned_cols=301 Identities=19% Similarity=0.229 Sum_probs=257.0
Q ss_pred CCCccceEEeecCccccc-----------------CCCcccC--CCcccceeecccccccc-cccccccCCCCccccEEE
Q 039327 1 HLTSIEELYLSNNHFQIP-----------------ISLEPLF--NHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSL 60 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L 60 (315)
++++|++|++++|.+.+. +| ..+. ++++|++|++++|.+.+ +|..+.+ ++ +|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~--l~--~L~~L 278 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA--LP--EMQLI 278 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTT--CS--SCCEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhc--CC--CCCEE
Confidence 478999999999999875 88 5788 99999999999999877 8877765 66 99999
Q ss_pred EeccCCC-Ccc-ccccccccC------CCCCeEEecCceecccCCh--hhhhcccccceeEeecCCCcCcCcCCCcCCCC
Q 039327 61 LLSSGYG-DGV-TFPKFLYHQ------HDLEDVHLSHIKMNGKFPN--WLLENNAKLETLFLINDSIGGPFRLPIHPHRR 130 (315)
Q Consensus 61 ~l~~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 130 (315)
++ ++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+ +.+++|++|++++|.+.+.+| .+..+++
T Consensus 279 ~L-s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 279 NV-ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EC-TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EC-cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99 8887 888 889888776 99999999999999 8887 64 899999999999999998888 8999999
Q ss_pred ccEEEcccCcCCCCCchhhhhcCCC-ceEEEeecCcCCCCCCccccCCC--CCcEEEccCccccCcCchhhcc------C
Q 039327 131 LRFLDVSNNNFQGHIPVEIGDILPS-LFSFNISTNALHGSIPSSFGNMN--FLRILDLSSNQLTGEIPERLAV------G 201 (315)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~~~~~~~~------~ 201 (315)
|++|++++|.++ .+|..+.. +++ |++|++++|.++ .+|..+...+ +|++|++++|.+.+..|..+.. .
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 999999999998 88888776 777 999999999999 7888777654 8999999999998766655430 3
Q ss_pred CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccccccccc-C-------CCCcEEEccCCcccc--------
Q 039327 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSK-C-------SSLEGLYLNNNSLSD-------- 265 (315)
Q Consensus 202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~-------~~L~~L~l~~n~i~~-------- 265 (315)
.++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..... . ++|++|++++|.+..
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 678999999999999766666777999999999999998 55544332 2 289999999987654
Q ss_pred -------ccCCCCccccCCchhhcccCCCCEEec------ccCccCCCCCCCcc-ccccceecC
Q 039327 266 -------ITMPKNHLEGPIPVEFCQLYSLHILDI------SDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 266 -------l~l~~~~l~~~~~~~l~~~~~L~~L~l------~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
+++++|.+.+ +|..+..+++|+.|++ ++|.+.+.+|..+. +++|++|++
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 6677888887 8888889999999999 56778888898888 899998875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-33 Score=259.89 Aligned_cols=137 Identities=23% Similarity=0.256 Sum_probs=73.8
Q ss_pred CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327 125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204 (315)
Q Consensus 125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 204 (315)
++.+++|++|++++|.++ .+|..+.. +++|++|++.+|.+++..|..+..+++|++|++++|.+.+.++...+..+++
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred hccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 445555666666665555 55555443 5566666666665554444455555555555555555544444443334555
Q ss_pred ccEEEccCCCCCCcc--cccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcc
Q 039327 205 LEFLALSNNNLKGHM--FCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL 263 (315)
Q Consensus 205 L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 263 (315)
|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 666666655555433 34445555555555555555544455555555555555555443
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.4e-34 Score=266.53 Aligned_cols=297 Identities=19% Similarity=0.207 Sum_probs=193.3
Q ss_pred CCccceEEeecCcccc-----------------cCCCcccC--CCcccceeecccccccc-cccccccCCCCccccEEEE
Q 039327 2 LTSIEELYLSNNHFQI-----------------PISLEPLF--NHSRLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLL 61 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~-----------------~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~ 61 (315)
+++|++|+|++|.+.+ .+| ..+. ++++|++|++++|.+.+ +|..+.+ ++ +|++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--L~--~L~~L~ 521 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYD--LP--ELQSLN 521 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--CS--SCCEEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCCCccChHHHhC--CC--CCCEEE
Confidence 5677788888887775 266 3555 77778888887777655 6666554 55 777777
Q ss_pred eccCCC-Ccc-ccccccccCC-------CCCeEEecCceecccCCh--hhhhcccccceeEeecCCCcCcCcCCCcCCCC
Q 039327 62 LSSGYG-DGV-TFPKFLYHQH-------DLEDVHLSHIKMNGKFPN--WLLENNAKLETLFLINDSIGGPFRLPIHPHRR 130 (315)
Q Consensus 62 l~~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 130 (315)
+ ++|. +.+ .+|..+.+++ +|++|++++|.++ .+|. .+ +.+++|++|++++|.+. .+| .+..+++
T Consensus 522 L-s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 522 I-ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp C-TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred C-cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 7 6665 666 5665554443 7777777777776 6665 43 66777777777777666 455 5666666
Q ss_pred ccEEEcccCcCCCCCchhhhhcCCC-ceEEEeecCcCCCCCCccccCC-------------------------------C
Q 039327 131 LRFLDVSNNNFQGHIPVEIGDILPS-LFSFNISTNALHGSIPSSFGNM-------------------------------N 178 (315)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~-------------------------------~ 178 (315)
|++|++++|.+. .+|..+.. +++ |+.|++++|.++ .+|..+... +
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred ceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 666666666666 56655544 445 666666666555 344333222 2
Q ss_pred CCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccC-------CCCCCEEEcCCCccccccccccc--c
Q 039327 179 FLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFN-------LANLRQLQLEDNRFIGEIPQSLS--K 249 (315)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~~--~ 249 (315)
+|+.|++++|.+. .+|...+..+++|+.|++++|.+.......+.. +++|+.|++++|.++ .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 4555555555555 555555545667777777777766433333322 226777777777776 5666665 6
Q ss_pred CCCCcEEEccCCcccc-------------ccC------CCCccccCCchhhcccCCCCEEecccCccCCCCCCCcccccc
Q 039327 250 CSSLEGLYLNNNSLSD-------------ITM------PKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFHPLYI 310 (315)
Q Consensus 250 ~~~L~~L~l~~n~i~~-------------l~l------~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L 310 (315)
+++|+.|++++|.+.. +++ ++|.+.+.+|.++..+++|+.|++++|++ +.+|..+. ++|
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L 829 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQL 829 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSS
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCC
Confidence 7777777777776554 334 34777888888888899999999999988 57777654 677
Q ss_pred ceecC
Q 039327 311 KKVHL 315 (315)
Q Consensus 311 ~~l~l 315 (315)
+.|+|
T Consensus 830 ~~LdL 834 (876)
T 4ecn_A 830 YILDI 834 (876)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 77765
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-34 Score=261.38 Aligned_cols=293 Identities=20% Similarity=0.167 Sum_probs=242.7
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
.|+++++++|.+.+ ++...+.++++|++|++++|.++.+|..+.. .+ +|++|++ ++|.+.+..|..+..+++|+
T Consensus 255 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 255 SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSELPSGLVG--LS--TLKKLVL-SANKFENLCQISASNFPSLT 328 (606)
T ss_dssp EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CT--TCCEEEC-TTCCCSBGGGGCGGGCTTCS
T ss_pred ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccCCCChhhcc--cc--cCCEEEC-ccCCcCcCchhhhhccCcCC
Confidence 68999999999984 4446799999999999999999999888765 56 9999999 99999988888899999999
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcC--cCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
+|++++|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+.. +++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l 407 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDL 407 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTTCSEEEC
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-CccCCeEEC
Confidence 99999999887777665689999999999999988655 678899999999999999987444555554 889999999
Q ss_pred ecCcCCCCCCc-cccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCc---ccccccCCCCCCEEEcCCC
Q 039327 162 STNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGH---MFCRNFNLANLRQLQLEDN 237 (315)
Q Consensus 162 ~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n 237 (315)
++|.+++..+. .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+. .+..+..+++|++|++++|
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL-FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT-TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH-HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 99998865544 4888999999999999998444444 44689999999999998762 2356778999999999999
Q ss_pred ccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 238 RFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 238 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
.+++..|..+..+++|++|++++|++.. ..|.++..+++| .|++++|++++..|..+. +++|+++++
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTS----------SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCG----------GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEEC
T ss_pred ccCccChhhhccccCCCEEECCCCccCc----------CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeC
Confidence 9998888889999999999999988775 346677777777 777777777766666666 777777664
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=250.09 Aligned_cols=281 Identities=18% Similarity=0.106 Sum_probs=243.3
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
++++|++|++++|.+.+..+ ..+.++++|++|++++|.++.+|..... .++ +|++|++ ++|.+.+..+..+..++
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~--~L~~L~L-s~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFT-GLS--NLTKLDI-SENKIVILLDYMFQDLY 128 (477)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSST-TCT--TCCEEEC-TTSCCCEECTTTTTTCT
T ss_pred CCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCccccc-CCC--CCCEEEC-CCCccccCChhHccccc
Confidence 47899999999999986556 6899999999999999999998765432 255 9999999 99999988888999999
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 160 (315)
+|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp TCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEE
T ss_pred cCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceee
Confidence 9999999999998666655 489999999999999998766667899999999999999998 45544444589999999
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+++|...+.++.......+|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred CCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 9998877677766666779999999999998 777666667999999999999999888888999999999999999999
Q ss_pred cccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299 (315)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 299 (315)
+..+..+..+++|++|++++|.++.+. +..|..+++|+.|++++|.+..
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLE----------ESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCC----------GGGBSCGGGCCEEECCSSCEEC
T ss_pred eECHHHhcCcccCCEEECCCCcCceeC----------HhHcCCCcccCEEEccCCCccC
Confidence 888899999999999999999887533 5678889999999999998864
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-33 Score=264.66 Aligned_cols=279 Identities=20% Similarity=0.289 Sum_probs=202.2
Q ss_pred CCCcccCCCcccceeecccccccc------------------cccccc--cCCCCccccEEEEeccCCCCcccccccccc
Q 039327 19 ISLEPLFNHSRLKRLWAYNNEIKA------------------EITESH--SLTAPNFQLQSLLLSSGYGDGVTFPKFLYH 78 (315)
Q Consensus 19 ~~~~~~~~~~~L~~L~l~~~~~~~------------------~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 78 (315)
+| ..+.++++|++|+|++|.+++ +|..+. + ++ +|++|++ ++|.+.+.+|..+.+
T Consensus 440 IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--L~--~L~~L~L-s~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 440 IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN--LK--DLTDVEL-YNCPNMTQLPDFLYD 513 (876)
T ss_dssp EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CT--TCCEEEE-ESCTTCCSCCGGGGG
T ss_pred hh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc--CC--CCCEEEC-cCCCCCccChHHHhC
Confidence 55 468899999999999999998 888865 4 55 9999999 999999999999999
Q ss_pred CCCCCeEEecCce-ecc-cCChhhhhccc-------ccceeEeecCCCcCcCcC--CCcCCCCccEEEcccCcCCCCCch
Q 039327 79 QHDLEDVHLSHIK-MNG-KFPNWLLENNA-------KLETLFLINDSIGGPFRL--PIHPHRRLRFLDVSNNNFQGHIPV 147 (315)
Q Consensus 79 ~~~L~~L~l~~~~-~~~-~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~ 147 (315)
+++|+.|++++|+ +++ .+|..+ +.++ +|++|++++|.+. .+|. .+..+++|++|++++|.+. .+|
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 9999999999998 887 788775 5555 9999999999998 7888 8999999999999999998 888
Q ss_pred hhhhcCCCceEEEeecCcCCCCCCccccCCCC-CcEEEccCccccCcCchhhccCCC--cccEEEccCCCCCCcccccc-
Q 039327 148 EIGDILPSLFSFNISTNALHGSIPSSFGNMNF-LRILDLSSNQLTGEIPERLAVGCV--NLEFLALSNNNLKGHMFCRN- 223 (315)
Q Consensus 148 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~- 223 (315)
.+.. +++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .+|..+. ..+ +|+.|++++|.+.+..|...
T Consensus 590 ~~~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 590 AFGT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CCCT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred hhcC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchh
Confidence 5554 889999999999999 88888999999 999999999998 7775543 232 37777777777765433211
Q ss_pred --c--CCCCCCEEEcCCCcccccccccc-ccCCCCcEEEccCCccc---------------------cccCCCCccccCC
Q 039327 224 --F--NLANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLS---------------------DITMPKNHLEGPI 277 (315)
Q Consensus 224 --~--~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~---------------------~l~l~~~~l~~~~ 277 (315)
. ..++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+. .+++++|++. .+
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 1 2235555566555555 333322 24555555555544322 2333444444 44
Q ss_pred chhhc--ccCCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327 278 PVEFC--QLYSLHILDISDNNISGSLPSCFH-PLYIKKVH 314 (315)
Q Consensus 278 ~~~l~--~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~ 314 (315)
|..+. .+++|+.|++++|.+++ +|..+. +++|+.|+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred hHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 44444 55555555555555553 444444 55555544
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-33 Score=259.54 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
+++|++|++++|.+.+..+ ..+.++++|++|++++|.++++ |..+.+ ++ +|++|++ ++|.+.+..+..+.+++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSG--LT--SLENLVA-VETKLASLESFPIGQLI 128 (606)
T ss_dssp CTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTT--CT--TCCEEEC-TTSCCCCSSSSCCTTCT
T ss_pred CccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcCC--cc--cCCEEEc-cCCccccccccccCCCC
Confidence 4455555555555543323 3455555555555555555553 333332 33 5555555 55555443434455555
Q ss_pred CCCeEEecCceecc-cCChhhhhcccccceeEeecCCCc
Q 039327 81 DLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIG 118 (315)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 118 (315)
+|++|++++|.+++ .+|..+ +.+++|++|++++|.+.
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCC
T ss_pred CCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcce
Confidence 55555555555543 344443 55555555555555443
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=247.32 Aligned_cols=138 Identities=26% Similarity=0.352 Sum_probs=104.8
Q ss_pred cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCC--cccccccCCCCCCEEEcCCCcccccccc-ccccCC
Q 039327 175 GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKG--HMFCRNFNLANLRQLQLEDNRFIGEIPQ-SLSKCS 251 (315)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~ 251 (315)
..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+.+|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 5667788888888888755665544 57788888888888876 3445677788888888888888764554 366677
Q ss_pred CCcEEEccCCccc------------cccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCC-cc-ccccceecC
Q 039327 252 SLEGLYLNNNSLS------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC-FH-PLYIKKVHL 315 (315)
Q Consensus 252 ~L~~L~l~~n~i~------------~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-~~~L~~l~l 315 (315)
+|++|++++|++. .+++++|.++ .+|.++..+++|+.|++++|+++ .+|.. +. +++|++|++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 8888888887653 2667777777 78888889999999999999999 56665 76 899998875
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=238.23 Aligned_cols=282 Identities=21% Similarity=0.219 Sum_probs=198.5
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
+++++.++++++.+. .+|...+.++++|++|++++|.+++++. .+.. ++ +|++|++ ++|.+.+..|..+.+++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AH--TIQKLYM-GFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccC--CC--CcCEEEC-CCCCCCcCCHHHhcCCC
Confidence 578999999999987 6775567899999999999999988665 4443 55 8999999 99999988888899999
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 160 (315)
+|++|++++|.++ .+|..+++.+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++. . .+++|+.++
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~--~-~l~~L~~L~ 192 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--S-LIPSLFHAN 192 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG--G-GCTTCSEEE
T ss_pred CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc--c-cccccceee
Confidence 9999999999998 666665688999999999999998877888999999999999999987 4442 2 256777777
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchh-------------------hccCCCcccEEEccCCCCCCcccc
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPER-------------------LAVGCVNLEFLALSNNNLKGHMFC 221 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-------------------~~~~~~~L~~L~l~~n~~~~~~~~ 221 (315)
+.+|.++. +...++|++|++++|.+. .++.. .+..+++|+.|++++|.+.+..+.
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCC-EEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccccccc-----cCCCCcceEEECCCCeee-eccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChh
Confidence 77766552 112234444444444443 22221 112345555555555555544444
Q ss_pred cccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC
Q 039327 222 RNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301 (315)
Q Consensus 222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 301 (315)
.+..+++|++|++++|.+++ ++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~l~~L~~L~L~~N~i~~~- 333 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-----------HVERNQPQFDRLENLYLDHNSIVTL- 333 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-----------CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-----------ecCccccccCcCCEEECCCCcccee-
Confidence 55555555555555555542 3333344555555555555444 4667788889999999999998844
Q ss_pred CCCcc-ccccceecC
Q 039327 302 PSCFH-PLYIKKVHL 315 (315)
Q Consensus 302 ~~~~~-~~~L~~l~l 315 (315)
+ +. +++|++|++
T Consensus 334 ~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 334 K--LSTHHTLKNLTL 346 (390)
T ss_dssp C--CCTTCCCSEEEC
T ss_pred C--chhhccCCEEEc
Confidence 3 34 778887764
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.7e-33 Score=253.73 Aligned_cols=305 Identities=21% Similarity=0.168 Sum_probs=198.9
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCcc-cccccccc
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGV-TFPKFLYH 78 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 78 (315)
++++|++|++++|.+.+..| ..+.++++|++|++++|.+++++ ..+.+ .+ +|++|++ ++|.+.+ .+|..+.+
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLASLESFPIGQ--LI--TLKKLNV-AHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSSSCCTT--CT--TCCEEEC-CSSCCCCCCCCGGGGT
T ss_pred chhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCccccccccccCC--CC--CCCEEeC-CCCcccceechHhHhh
Confidence 46889999999999985556 68899999999999999998855 44443 55 8999999 8888875 56888889
Q ss_pred CCCCCeEEecCceecccCChhhhhccc---------------------------ccceeEeecCCCc-------------
Q 039327 79 QHDLEDVHLSHIKMNGKFPNWLLENNA---------------------------KLETLFLINDSIG------------- 118 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------~L~~L~l~~~~~~------------- 118 (315)
+++|++|++++|.+++..+..+ +.++ +|++|++++|.+.
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp CTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred cCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccc
Confidence 9999999998887765433221 1111 2333333333221
Q ss_pred --------------------------------------------------------------------------------
Q 039327 119 -------------------------------------------------------------------------------- 118 (315)
Q Consensus 119 -------------------------------------------------------------------------------- 118 (315)
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~ 310 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCS
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCC
Confidence
Q ss_pred ---------CcCcC--------------------CCcCCCCccEEEcccCcCCCC--CchhhhhcCCCceEEEeecCcCC
Q 039327 119 ---------GPFRL--------------------PIHPHRRLRFLDVSNNNFQGH--IPVEIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 119 ---------~~~~~--------------------~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~ 167 (315)
+.+|. .+..+++|++|++++|.+++. ++..+.. +++|++|++++|.++
T Consensus 311 ~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAI 389 (606)
T ss_dssp EEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEE
T ss_pred EEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCccc
Confidence 11110 111223333333333333211 1233332 555666666665555
Q ss_pred CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc-ccccc
Q 039327 168 GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG-EIPQS 246 (315)
Q Consensus 168 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~ 246 (315)
..|..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..
T Consensus 390 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 390 -IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp -EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred -cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence 3445566677777777777777644443444467778888888887777677777777888888888888776 35677
Q ss_pred cccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-cc-cc
Q 039327 247 LSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PL-YI 310 (315)
Q Consensus 247 ~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~-~L 310 (315)
+..+++|++|++++|.+.. +++++|.+.+..|.+++.+++|+.|++++|+++ .+|..+. ++ +|
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L 547 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL 547 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence 7778888888888776544 566777777777777777788888888888877 5666565 54 47
Q ss_pred ceecC
Q 039327 311 KKVHL 315 (315)
Q Consensus 311 ~~l~l 315 (315)
++|++
T Consensus 548 ~~l~l 552 (606)
T 3vq2_A 548 AFFNL 552 (606)
T ss_dssp CEEEC
T ss_pred cEEEc
Confidence 77664
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.5e-33 Score=251.72 Aligned_cols=133 Identities=17% Similarity=0.075 Sum_probs=73.5
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+.|++|++++|.+.+..+ ..+.++++|++|++++|.+++++ ..+.+ ++ +|++|++ ++|.+.+..+..+.++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYS--LG--SLEHLDL-SDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTT--CT--TCCEEEC-TTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccc--cc--cCCEEEC-CCCccCccCHHHhccCCC
Confidence 356777777776664333 45666777777777777666644 33332 34 6666666 666666555555666666
Q ss_pred CCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCC
Q 039327 82 LEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 82 L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 142 (315)
|++|++++|.+++ ..|.. ++.+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.
T Consensus 100 L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 6666666666653 22332 2555555555555554222222 34444444444444444443
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.5e-32 Score=230.59 Aligned_cols=285 Identities=20% Similarity=0.249 Sum_probs=213.4
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++|++|+++++.+. .++ .+..+++|++|++++|.+++++. +.. ++ +|++|++ ++|.+.+ + ..+..+++
T Consensus 43 l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~~--l~--~L~~L~L-~~n~i~~-~-~~~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDISP-LSN--LV--KLTNLYI-GTNKITD-I-SALQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCC-C-GGGTTCTT
T ss_pred cccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccchh-hhc--CC--cCCEEEc-cCCcccC-c-hHHcCCCc
Confidence 567899999999886 454 57888999999999998888665 443 55 8999999 8888775 3 35888899
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
|++|++++|.+++ ++. +..+++|++|++++|...... ..+..+++|++|++++|.+. .++. +. .+++|++|++
T Consensus 112 L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~-~~~~-~~-~l~~L~~L~l 184 (347)
T 4fmz_A 112 LRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK-DVTP-IA-NLTDLYSLSL 184 (347)
T ss_dssp CSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCSEEEC
T ss_pred CCEEECcCCcccC-chh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcC-Cchh-hc-cCCCCCEEEc
Confidence 9999999988874 333 478888888888888655433 33778888888888888776 4444 33 3778888888
Q ss_pred ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
.+|.+.. .+. +..+++|+.+++++|.+. ..+. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 185 ~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 185 NYNQIED-ISP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp TTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cCCcccc-ccc-ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 8887773 333 677778888888888776 3333 3347778888888887776544 6677778888888877764
Q ss_pred ccccccccCCCCcEEEccCCcccc------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-cc
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLSD------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PL 308 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~~------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~ 308 (315)
. ..+..+++|++|++++|.+.. +++++|.+.+..+..++.+++|+.|++++|.+++..| +. ++
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred C--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 3 456677778888887776554 6677777777778889999999999999999986555 55 99
Q ss_pred ccceecC
Q 039327 309 YIKKVHL 315 (315)
Q Consensus 309 ~L~~l~l 315 (315)
+|++|++
T Consensus 334 ~L~~L~l 340 (347)
T 4fmz_A 334 KMDSADF 340 (347)
T ss_dssp TCSEESS
T ss_pred ccceeeh
Confidence 9999875
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-32 Score=245.48 Aligned_cols=297 Identities=19% Similarity=0.177 Sum_probs=179.8
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
++|++|++++|.+.+ ++...+.++++|++|++++|.++++ |..+.+ ++ +|++|++ ++|.++ .+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~--~L~~L~L-s~N~l~-~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLF--NQ--DLEYLDV-SHNRLQ-NISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTT--CT--TCCEEEC-TTSCCC-EECSC--CCTT
T ss_pred CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCC--CC--CCCEEEC-CCCcCC-ccCcc--cccc
Confidence 456777777777763 3334667777777777777777664 333333 34 6777777 666666 34544 5666
Q ss_pred CCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCc--cEEEcccCcC--CCCCchhhhh-----
Q 039327 82 LEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL--RFLDVSNNNF--QGHIPVEIGD----- 151 (315)
Q Consensus 82 L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~----- 151 (315)
|++|++++|.+++ ..|.. ++.+++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..
T Consensus 123 L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp CSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred CCEEECCCCCccccCchHh-hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 7777777776654 23344 36666666666666665431 22223333 5555544444 2111111110
Q ss_pred ---------------------------------------------------------------------------cCCCc
Q 039327 152 ---------------------------------------------------------------------------ILPSL 156 (315)
Q Consensus 152 ---------------------------------------------------------------------------~~~~L 156 (315)
..++|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 00144
Q ss_pred eEEEeecCcCCCCCCccc-----------------------------------------------------cCCCCCcEE
Q 039327 157 FSFNISTNALHGSIPSSF-----------------------------------------------------GNMNFLRIL 183 (315)
Q Consensus 157 ~~L~l~~n~~~~~~~~~l-----------------------------------------------------~~~~~L~~L 183 (315)
++|++++|.+++.+|..+ ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 444444444443333322 456677777
Q ss_pred EccCccccCcCchhhccCCCcccEEEccCCCCCCcc--cccccCCCCCCEEEcCCCccccccc-cccccCCCCcEEEccC
Q 039327 184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHM--FCRNFNLANLRQLQLEDNRFIGEIP-QSLSKCSSLEGLYLNN 260 (315)
Q Consensus 184 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~ 260 (315)
++++|.+.+..|..+. .+++|+.|++++|.+.+.. +..+..+++|++|++++|.+++.+| ..+..+++|++|++++
T Consensus 359 ~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp ECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred ECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 7777777654554443 5777777777777776532 3456677777777777777765344 3455667777777777
Q ss_pred Cccc------------cccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCC-cc-ccccceecC
Q 039327 261 NSLS------------DITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC-FH-PLYIKKVHL 315 (315)
Q Consensus 261 n~i~------------~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-~~~L~~l~l 315 (315)
|++. .+++++|.++ .+|..+..+++|+.|++++|+++ .+|.. +. +++|+.|++
T Consensus 438 n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 438 NMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp SCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred CCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 6552 2566666666 67777779999999999999999 56665 66 899998875
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=257.11 Aligned_cols=296 Identities=20% Similarity=0.170 Sum_probs=224.6
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccc-c-ccccccCCCCccccEEEEeccCCCCccccccccccC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-E-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ 79 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 79 (315)
.+++++|++++|.+.+..+ ..+.++++|++|++++|.... + |..+.+ ++ +|++|++ ++|.+.+..|..+.++
T Consensus 23 p~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~--L~--~L~~L~L-s~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRN--LP--NLRILDL-GSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSS--CT--TCCEEEC-TTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcC--CC--CCCEEEC-CCCcCcccCHhHccCC
Confidence 4689999999999985555 689999999999999995543 5 555554 55 9999999 9999998889999999
Q ss_pred CCCCeEEecCceecccCChh-hhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcC--CC
Q 039327 80 HDLEDVHLSHIKMNGKFPNW-LLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDIL--PS 155 (315)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~ 155 (315)
++|++|++++|.+++.++.. .++.+++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+.. + ++
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~ 175 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKT 175 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCc
Confidence 99999999999998766553 34889999999999999987544 57899999999999999998666666654 4 78
Q ss_pred ceEEEeecCcCCCCCCccccCCCC------CcEEEccCccccCcCchhhcc-----------------------------
Q 039327 156 LFSFNISTNALHGSIPSSFGNMNF------LRILDLSSNQLTGEIPERLAV----------------------------- 200 (315)
Q Consensus 156 L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~~~~----------------------------- 200 (315)
|+.|++.+|.+.+..|..+..+++ |+.|++++|.+.+..+..+..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 999999999888777766666655 899999888765444332211
Q ss_pred ------C--CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCc
Q 039327 201 ------G--CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNH 272 (315)
Q Consensus 201 ------~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~ 272 (315)
. .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------- 328 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE------- 328 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-------
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-------
Confidence 1 2578888888888887777888888889999998888887777888888888888888887654
Q ss_pred cccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327 273 LEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVH 314 (315)
Q Consensus 273 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~ 314 (315)
..+.+|..+++|+.|++++|.+.+..+..+. +++|++|+
T Consensus 329 ---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 329 ---LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp ---CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred ---cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence 1233444444455555555544433333344 44444443
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-32 Score=230.46 Aligned_cols=243 Identities=26% Similarity=0.397 Sum_probs=151.3
Q ss_pred ccEEEEeccCCCCcc--ccccccccCCCCCeEEecC-ceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCcc
Q 039327 56 QLQSLLLSSGYGDGV--TFPKFLYHQHDLEDVHLSH-IKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLR 132 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 132 (315)
+++.|++ +++.+.+ .+|..+.++++|++|++++ |.+.+.+|..+ +.+++|++|++++|.+.+..|..+..+++|+
T Consensus 51 ~l~~L~L-~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEE-ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEEC-CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5666666 6666665 5666666666666666663 66666666553 6666666666666666655666666666666
Q ss_pred EEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCC-CCcEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327 133 FLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMN-FLRILDLSSNQLTGEIPERLAVGCVNLEFLALS 211 (315)
Q Consensus 133 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 211 (315)
+|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+..++ +|++|++++|.+.+.+|..+. .+. |+.|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECc
Confidence 6666666666555555554 66666666666666655666666665 666666666666655555544 233 6666666
Q ss_pred CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEe
Q 039327 212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILD 291 (315)
Q Consensus 212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~ 291 (315)
+|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.. .+|.++..+++|+.|+
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~----------~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG----------TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE----------CCCGGGGGCTTCCEEE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC----------cCChHHhcCcCCCEEE
Confidence 6666655566666666666666666666544333 5556666666666665542 4566666666666666
Q ss_pred cccCccCCCCCCCccccccceec
Q 039327 292 ISDNNISGSLPSCFHPLYIKKVH 314 (315)
Q Consensus 292 l~~n~~~~~~~~~~~~~~L~~l~ 314 (315)
+++|++++.+|..-.+++|+.++
T Consensus 275 Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 275 VSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGG
T ss_pred CcCCcccccCCCCccccccChHH
Confidence 66666666666653356665554
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=248.61 Aligned_cols=140 Identities=26% Similarity=0.306 Sum_probs=97.8
Q ss_pred ccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCccccccccccccCCC
Q 039327 174 FGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSS 252 (315)
Q Consensus 174 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 252 (315)
+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 369 ~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 344455555555555544 33333 3346666666666666655433 45667777888888888777667777777888
Q ss_pred CcEEEccCCcccc---------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 253 LEGLYLNNNSLSD---------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 253 L~~L~l~~n~i~~---------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
|++|++++|.+.+ +++++|.+.+..|.+++.+++|+.|++++|.+++..+..+. +++|+.|++
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 8888888776641 66777778777788888899999999999999877777777 888888875
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-32 Score=232.70 Aligned_cols=251 Identities=25% Similarity=0.331 Sum_probs=197.0
Q ss_pred cccceeecccccccc---cccccccCCCCccccEEEEecc-CCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327 28 SRLKRLWAYNNEIKA---EITESHSLTAPNFQLQSLLLSS-GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN 103 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (315)
.++++|+++++.+.+ +|..+.+ ++ +|++|++ + ++.+.+.+|..+.++++|++|++++|.+++.+|..+ ..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~--l~--~L~~L~L-~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN--LP--YLNFLYI-GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG--CT--TCSEEEE-EEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GG
T ss_pred ceEEEEECCCCCccCCcccChhHhC--CC--CCCeeeC-CCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hC
Confidence 568888888888774 6666665 55 7888888 6 477777788888888888888888888877777764 78
Q ss_pred ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCC-CceEEEeecCcCCCCCCccccCCCCCcE
Q 039327 104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP-SLFSFNISTNALHGSIPSSFGNMNFLRI 182 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 182 (315)
+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+.. ++ +|++|++++|.+++..|..+..++ |++
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 888888888888887777778888888888888888887777777776 54 888888888888777777777776 888
Q ss_pred EEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc
Q 039327 183 LDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS 262 (315)
Q Consensus 183 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (315)
|++++|.+.+..+..+ ..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|.++..+++|++|++++|.
T Consensus 202 L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EECCSSEEEECCGGGC-CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EECcCCcccCcCCHHH-hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 8888888875554443 4688888888888888765554 6678889999999999888888888888899999988887
Q ss_pred cccccCCCCccccCCchhhcccCCCCEEecccCc-cCC
Q 039327 263 LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN-ISG 299 (315)
Q Consensus 263 i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-~~~ 299 (315)
+.. .+|.. ..+++|+.+++++|+ +.+
T Consensus 280 l~~----------~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 280 LCG----------EIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEE----------ECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccc----------cCCCC-ccccccChHHhcCCCCccC
Confidence 663 45654 778889999999887 554
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-31 Score=249.46 Aligned_cols=305 Identities=21% Similarity=0.174 Sum_probs=175.8
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
+++|++|++++|.+.+..+ ..+.++++|++|++++|.++.+|.. +.+ .+ +|++|++ ++|.+.+..+..+.+++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAF--CT--NLTELHL-MSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTT--CT--TCSEEEC-CSSCCCCCCSCTTTTCT
T ss_pred CCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhcc--CC--CCCEEEC-CCCccCccChhHccccC
Confidence 4566666666666654333 4556666666666666666665543 222 33 5666666 55555544445555666
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCc--CCCCccEEEcccCcCC----------------
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIH--PHRRLRFLDVSNNNFQ---------------- 142 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~---------------- 142 (315)
+|++|++++|.+++..+..+ ..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 66666666665554444332 4555555555555555443332221 2344444444444443
Q ss_pred -----------------------------------CCCchhhhhcC--CCceEEEeecCcCCCCCCccccCCCCCcEEEc
Q 039327 143 -----------------------------------GHIPVEIGDIL--PSLFSFNISTNALHGSIPSSFGNMNFLRILDL 185 (315)
Q Consensus 143 -----------------------------------~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 185 (315)
+..|..+.. + ++|++|++++|.+++..|..+..+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 222222221 2 23666666666666555555666666666666
Q ss_pred cCccccCcCchhhccCCCcccEEEccCCCCCC-----ccc----ccccCCCCCCEEEcCCCccccccccccccCCCCcEE
Q 039327 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKG-----HMF----CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGL 256 (315)
Q Consensus 186 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 256 (315)
++|.+.+..+..+ ..+++|+.|++++|...+ ..| ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 280 ~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 280 EYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp CSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 6666653333332 346666666666543321 111 145567788888888888887767777888888888
Q ss_pred EccCCc------------------cccccCCCCccccCCchhhcccCCCCEEecccCccCCCCC-CCcc-ccccceecC
Q 039327 257 YLNNNS------------------LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP-SCFH-PLYIKKVHL 315 (315)
Q Consensus 257 ~l~~n~------------------i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~-~~~L~~l~l 315 (315)
++++|. +..+++++|.+.+..|.++..+++|+.|++++|.+++.+| ..+. +++|++|++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 887763 3345667777777777777777778888888777765555 3444 666666553
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-31 Score=243.32 Aligned_cols=288 Identities=23% Similarity=0.258 Sum_probs=195.9
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
+++++.+++++|.+. .+|...+.++++|++|++++|.+++++. .+.. ++ +|++|++ ++|.+.+..|..+.+++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AH--TIQKLYM-GFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CC--CCCEEEC-CCCcCCCCCHHHHcCCC
Confidence 467899999999887 5665667889999999999999988654 4443 55 8999999 88999987788889999
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 160 (315)
+|++|++++|.++ .+|..+++.+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++. . .+++|+.|+
T Consensus 124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~--~-~l~~L~~L~ 198 (597)
T 3oja_B 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--S-LIPSLFHAN 198 (597)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG--G-GCTTCSEEE
T ss_pred CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh--h-hhhhhhhhh
Confidence 9999999999998 566655689999999999999998888888999999999999999887 4442 2 266777777
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+.+|.+++ +...++|+.|++++|.+. .++... .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cccCcccc-----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccC
Confidence 77776552 122334555555555444 222221 23444444444444431 23334444444444444444
Q ss_pred cccccccccCCCCcEEEccCCcccc-------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-
Q 039327 241 GEIPQSLSKCSSLEGLYLNNNSLSD-------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH- 306 (315)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~n~i~~-------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~- 306 (315)
+..|..+..+++|+.|++++|.+.. +++++|.+. .+|..+..+++|+.|++++|.+++.. +.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhh
Confidence 4444444444444444444443322 333344444 57777888899999999999987443 33
Q ss_pred ccccceecC
Q 039327 307 PLYIKKVHL 315 (315)
Q Consensus 307 ~~~L~~l~l 315 (315)
+++|++|++
T Consensus 344 ~~~L~~L~l 352 (597)
T 3oja_B 344 HHTLKNLTL 352 (597)
T ss_dssp TCCCSEEEC
T ss_pred cCCCCEEEe
Confidence 777877764
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=241.21 Aligned_cols=295 Identities=21% Similarity=0.209 Sum_probs=187.2
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
++|++|++++|.+.+..+ ..+.++++|++|++++|.++++ |..+.+ ++ +|++|++ ++|.++ .+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-s~N~l~-~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKF--NQ--ELEYLDL-SHNKLV-KISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTT--CT--TCCEEEC-CSSCCC-EEECC--CCCC
T ss_pred ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhc--cc--CCCEEec-CCCcee-ecCcc--ccCC
Confidence 356666666666653322 4566666666666666666663 344433 44 6666666 666665 34443 5666
Q ss_pred CCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCc--cEEEcccCcC--CCCCchhhhh-----
Q 039327 82 LEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRL--RFLDVSNNNF--QGHIPVEIGD----- 151 (315)
Q Consensus 82 L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~----- 151 (315)
|++|++++|.+++ .+|..+ +.+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~ 167 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTES 167 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEE
T ss_pred ccEEeccCCccccccchhhh-ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccce
Confidence 6666666666654 344443 566666666666666543 223444444 5555555544 2222222211
Q ss_pred -----------------------------------------------------------------------------cCC
Q 039327 152 -----------------------------------------------------------------------------ILP 154 (315)
Q Consensus 152 -----------------------------------------------------------------------------~~~ 154 (315)
..+
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 012
Q ss_pred CceEEEeecCcCCCCCCccc-----cCCCCCcEEEccCccccCcCch-------------------------hhccCCCc
Q 039327 155 SLFSFNISTNALHGSIPSSF-----GNMNFLRILDLSSNQLTGEIPE-------------------------RLAVGCVN 204 (315)
Q Consensus 155 ~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~~-------------------------~~~~~~~~ 204 (315)
+|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+|. .....+++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 55566666666555555555 4555554444444443 1220 00135788
Q ss_pred ccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc--ccccccccCCCCcEEEccCCcccc---------------cc
Q 039327 205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG--EIPQSLSKCSSLEGLYLNNNSLSD---------------IT 267 (315)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~---------------l~ 267 (315)
|+.|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+.. ++
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 9999999999988778888899999999999999886 456778889999999999987764 55
Q ss_pred CCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
+++|.+.+.+|..+. ++|+.|++++|+++ .+|..+. +++|++|++
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 677777766665553 68999999999998 7777666 889988875
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=4.1e-31 Score=245.74 Aligned_cols=285 Identities=24% Similarity=0.193 Sum_probs=218.1
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++++|++++|.+.+ ++...+.++++|++|++++|.++++ |..+.+ ++ +|++|++ ++|.+....+..+.++++
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQK--LP--MLKVLNL-QHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH--CT--TCCEEEC-CSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhc--cc--CcCEEEC-CCCccCccChhhhccCCC
Confidence 478999999999984 5546799999999999999999885 444444 55 8999999 888888655557999999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhh-cCCCceEEE
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGD-ILPSLFSFN 160 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~ 160 (315)
|++|++++|.+++..+.. ++.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.. .+++|++|+
T Consensus 99 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSCCCCCCSCT-TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCccCccChhH-ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 999999999998555555 489999999999999998888888999999999999999988433333321 257899999
Q ss_pred eecCcCCCCCCccccCC---------------------------CCCcEEEccCccccCcCchhhccCCC--cccEEEcc
Q 039327 161 ISTNALHGSIPSSFGNM---------------------------NFLRILDLSSNQLTGEIPERLAVGCV--NLEFLALS 211 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--~L~~L~l~ 211 (315)
+++|.+++..|..+..+ ++|+.|++++|.+.+..+..+. .++ +|+.|+++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLS 256 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECC
Confidence 99998886666655544 4566777777776644443332 343 48999999
Q ss_pred CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-----------------------cccccC
Q 039327 212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-----------------------LSDITM 268 (315)
Q Consensus 212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-----------------------i~~l~l 268 (315)
+|.+.+..+..+..+++|++|++++|.+.+..+.++..+++|+.|++++|. +..+++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 998888777788888899999999998887777788888888888886542 233566
Q ss_pred CCCccccCCchhhcccCCCCEEecccC
Q 039327 269 PKNHLEGPIPVEFCQLYSLHILDISDN 295 (315)
Q Consensus 269 ~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (315)
++|.+.+..+.+|..+++|+.|++++|
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CCCccCCCChhHhccccCCcEEECCCC
Confidence 667777666666666666666665544
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=9.6e-32 Score=245.06 Aligned_cols=132 Identities=20% Similarity=0.117 Sum_probs=78.0
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
.+++|++++|.+.+..+ ..+.++++|++|++++|.+++++.. +.+ ++ +|++|++ ++|.+.+..+..+.++++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQS--LS--HLSTLIL-TGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTT--CT--TCCEEEC-TTCCCCEECTTTTTTCTTC
T ss_pred cccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccC--ch--hCCEEeC-cCCcCCccCHhhhcCcccc
Confidence 46667777776663333 4566677777777777766664432 222 33 6677777 6666665555666666666
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCC
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~ 142 (315)
++|++++|.++...+.. ++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.++
T Consensus 103 ~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 103 QKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccccccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 66666666665322222 3566666666666666554 24555666666666666665544
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=252.98 Aligned_cols=281 Identities=20% Similarity=0.186 Sum_probs=176.6
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeeccccccccc-ccccccCCCCccccEEEEeccCCCCccccccc--cc
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAE-ITESHSLTAPNFQLQSLLLSSGYGDGVTFPKF--LY 77 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--l~ 77 (315)
++++|++|++++|...+.++...+.++++|++|+|++|.++.+ |..+.+ ++ +|++|++ +.|.+.+..+.. +.
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG--LF--HLFELRL-YFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS--CS--SCCCEEC-TTCCCSSCCSTTCCCS
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC--Cc--ccCEeeC-cCCCCCcccccCcccc
Confidence 4678999999999766666546889999999999999998885 556554 55 8999999 888888765554 78
Q ss_pred cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCC--CCccEEEcccCcCCCCCchhhhhcCC-
Q 039327 78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPH--RRLRFLDVSNNNFQGHIPVEIGDILP- 154 (315)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~- 154 (315)
++++|++|++++|.+++..+...++.+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+.. ++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~ 199 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMN 199 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCC
Confidence 889999999999988766554335888999999999888876666555554 55666666666655444433222 21
Q ss_pred -----CceEEEeecCcCCCCCCcccc------------------------------------C--CCCCcEEEccCcccc
Q 039327 155 -----SLFSFNISTNALHGSIPSSFG------------------------------------N--MNFLRILDLSSNQLT 191 (315)
Q Consensus 155 -----~L~~L~l~~n~~~~~~~~~l~------------------------------------~--~~~L~~L~l~~n~~~ 191 (315)
.|+.|++++|.+++..+..+. . .++|+.|++++|.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 255555555544322222111 1 145666666666555
Q ss_pred CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCC
Q 039327 192 GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKN 271 (315)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~ 271 (315)
.++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+.
T Consensus 280 -~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~---- 354 (844)
T 3j0a_A 280 -SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ---- 354 (844)
T ss_dssp -EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC----
T ss_pred -ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC----
Confidence 233333334566666666666665555555556666666666666665555555566666666666665554311
Q ss_pred ccccCCchhhcccCCCCEEecccCccC
Q 039327 272 HLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 272 ~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
+..|..+++|+.|++++|.++
T Consensus 355 ------~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 355 ------DQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ------SSCSCSCCCCCEEEEETCCSC
T ss_pred ------hhhhcCCCCCCEEECCCCCCC
Confidence 233444555555555555444
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.1e-30 Score=237.68 Aligned_cols=293 Identities=20% Similarity=0.213 Sum_probs=229.9
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
...++++++++.++ .+|. .+. ++|++|++++|.+++++ ..+.+ ++ +|++|++ ++|.+++..|..+.++++
T Consensus 31 ~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~--l~--~L~~L~L-s~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISF--LS--ELRVLRL-SHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp --CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTT--CT--TCCEEEC-CSCCCCEECTTTTTTCTT
T ss_pred CCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhcc--CC--CccEEEC-CCCCCCcCCHHHhCCCCC
Confidence 34578999999998 5774 333 79999999999999966 45554 66 9999999 999999888899999999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCc--eE
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSL--FS 158 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~ 158 (315)
|++|++++|.++ .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+. .+.. ++++ ++
T Consensus 102 L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~-l~~L~L~~ 173 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP-VAHLHLSC 173 (562)
T ss_dssp CCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG-GTTSCEEE
T ss_pred CCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh-hhhceeeE
Confidence 999999999998 67764 79999999999999986 3457899999999999999998742 2222 4455 99
Q ss_pred EEeecCcC--CCCCCccccCCC----------------------------------------------------------
Q 039327 159 FNISTNAL--HGSIPSSFGNMN---------------------------------------------------------- 178 (315)
Q Consensus 159 L~l~~n~~--~~~~~~~l~~~~---------------------------------------------------------- 178 (315)
|++.+|.+ ++..|..+..+.
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99999988 555555444322
Q ss_pred -----------------------CCcEEEccCccccCcCchhhc------------------------------------
Q 039327 179 -----------------------FLRILDLSSNQLTGEIPERLA------------------------------------ 199 (315)
Q Consensus 179 -----------------------~L~~L~l~~n~~~~~~~~~~~------------------------------------ 199 (315)
+|++|++++|.+.+.+|...+
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 677777777777666665431
Q ss_pred ----------------cCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc--ccccccccCCCCcEEEccCC
Q 039327 200 ----------------VGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG--EIPQSLSKCSSLEGLYLNNN 261 (315)
Q Consensus 200 ----------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n 261 (315)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 356788899999998888778888889999999999999885 33566788899999999988
Q ss_pred cccc---------------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 262 SLSD---------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 262 ~i~~---------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
.+.. +++++|.+.+.++..+. ++|+.|++++|+++ .+|..+. +++|++|++
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 7764 55677777766655443 68999999999998 6776655 888988875
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.7e-30 Score=220.91 Aligned_cols=283 Identities=20% Similarity=0.241 Sum_probs=204.0
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
+++.++++++.+. .+|. .+ .+.+++|++++|.+++++. .+.+ ++ +|++|++ ++|.+.+..|..+..+++|
T Consensus 32 ~l~~l~~~~~~l~-~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPK-DL--PPDTALLDLQNNKITEIKDGDFKN--LK--NLHTLIL-INNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSCCC-SCCC-SC--CTTCCEEECCSSCCCCBCTTTTTT--CT--TCCEEEC-CSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCCCcc-ccCc-cC--CCCCeEEECCCCcCCEeChhhhcc--CC--CCCEEEC-CCCcCCeeCHHHhcCCCCC
Confidence 5778888887776 5552 22 2578888888888887655 3333 45 7888888 7888887777788888888
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC--CCchhhhhcCCCceEEE
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG--HIPVEIGDILPSLFSFN 160 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~ 160 (315)
++|++++|.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+. .+++|++|+
T Consensus 103 ~~L~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~ 177 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIR 177 (330)
T ss_dssp CEEECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEE
T ss_pred CEEECCCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEE
Confidence 88888888877 556543 3688888888888876666667788888888888887752 2333343 378888888
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+.+|.++ .+|..+. ++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 178 l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 178 IADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 8888877 4554443 77888888888887333333 446788888888888887776667778888888888888887
Q ss_pred cccccccccCCCCcEEEccCCccccccCCCCccccCCchhhc------ccCCCCEEecccCccCC--CCCCCcc-ccccc
Q 039327 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFC------QLYSLHILDISDNNISG--SLPSCFH-PLYIK 311 (315)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~------~~~~L~~L~l~~n~~~~--~~~~~~~-~~~L~ 311 (315)
.+|..+..+++|++|++++|.++.+. +..|+ ..+.++.+++++|.+.. ..|..+. +..++
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~----------~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~ 322 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIG----------SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCC----------TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred -cCChhhccCCCcCEEECCCCcCCccC----------hhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence 66777788888888888888877543 22232 24678888999888753 4455666 77777
Q ss_pred eecC
Q 039327 312 KVHL 315 (315)
Q Consensus 312 ~l~l 315 (315)
.+++
T Consensus 323 ~l~L 326 (330)
T 1xku_A 323 AVQL 326 (330)
T ss_dssp GEEC
T ss_pred EEEe
Confidence 7764
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=9.2e-30 Score=226.30 Aligned_cols=284 Identities=25% Similarity=0.312 Sum_probs=173.0
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++|++|++++|.+. .++ .+.++++|++|++++|.+..++. +.+ ++ +|++|++ ++|.+.+..+ +.++++
T Consensus 67 l~~L~~L~Ls~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~--l~--~L~~L~L-~~n~l~~~~~--~~~l~~ 135 (466)
T 1o6v_A 67 LNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIADITP-LAN--LT--NLTGLTL-FNNQITDIDP--LKNLTN 135 (466)
T ss_dssp CTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCCCGG--GTTCTT
T ss_pred hcCCCEEECCCCccC-Cch--hhhccccCCEEECCCCccccChh-hcC--CC--CCCEEEC-CCCCCCCChH--HcCCCC
Confidence 566777777777776 333 26677777777777777766554 433 44 7777777 7777664322 677777
Q ss_pred CCeEEecCceecccCChh-------------------hhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCC
Q 039327 82 LEDVHLSHIKMNGKFPNW-------------------LLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 142 (315)
|++|++++|.+.+ ++.. -+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 136 L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 136 LNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp CSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccc
Confidence 7777777777653 2210 023445555555555555432 23555566666666666555
Q ss_pred CCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327 143 GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR 222 (315)
Q Consensus 143 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 222 (315)
+ ++. +. .+++|++|++++|.++. . ..+..+++|+.|++++|.+.+ .+. +..+++|+.|++++|.+.+..+
T Consensus 213 ~-~~~-~~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-- 282 (466)
T 1o6v_A 213 D-ITP-LG-ILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP-- 282 (466)
T ss_dssp C-CGG-GG-GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--
T ss_pred c-ccc-cc-ccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc--
Confidence 2 222 22 25566666666666552 2 245566666777776666653 222 2346667777777776665433
Q ss_pred ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc------------ccCCCCccccCCchhhcccCCCCEE
Q 039327 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD------------ITMPKNHLEGPIPVEFCQLYSLHIL 290 (315)
Q Consensus 223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~------------l~l~~~~l~~~~~~~l~~~~~L~~L 290 (315)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. +++++|.+.+. ..+..+++|+.|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence 5566777777777777664322 5666777777777765543 55666666643 357777888888
Q ss_pred ecccCccCCCCCCCcc-ccccceecC
Q 039327 291 DISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 291 ~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
++++|++++..| +. +++|+.|++
T Consensus 359 ~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 359 SAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp ECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred eCCCCccCccch--hhcCCCCCEEec
Confidence 888888876655 44 777777654
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-30 Score=222.01 Aligned_cols=282 Identities=18% Similarity=0.234 Sum_probs=207.9
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDL 82 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 82 (315)
+++.++++++.+. .+|. .+ .++|++|++++|.++.++. .+.+ ++ +|++|++ ++|.+.+..|..+.++++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKG--LQ--HLYALVL-VNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTT--CT--TCCEEEC-CSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhC--CC--CCcEEEC-CCCccCccCHhHhhCcCCC
Confidence 5788888888776 5663 23 3678888888888877543 4443 55 7888888 8888887777788888888
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC--CCchhhhhcCCCceEEE
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG--HIPVEIGDILPSLFSFN 160 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~ 160 (315)
++|++++|.++ .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+.. + +|++|+
T Consensus 105 ~~L~L~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L~ 178 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYLR 178 (332)
T ss_dssp CEEECCSSCCC-SCCSSC---CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCCB
T ss_pred CEEECCCCcCC-ccCccc---cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEEE
Confidence 88888888877 566543 2788888888888876555667888888888888887752 23333332 4 788888
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+++|.++ .+|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 179 l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 179 ISEAKLT-GIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp CCSSBCS-SCCSSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCCCC-ccCcccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 8888887 4555443 67888888888887 444333446888888888888888877777888888899999888887
Q ss_pred cccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcc------cCCCCEEecccCccC--CCCCCCcc-ccccc
Q 039327 241 GEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQ------LYSLHILDISDNNIS--GSLPSCFH-PLYIK 311 (315)
Q Consensus 241 ~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~------~~~L~~L~l~~n~~~--~~~~~~~~-~~~L~ 311 (315)
.+|..+..+++|++|++++|.++.+. +..|+. .++++.|++++|.+. +..|..+. ++.|+
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~l~~~~----------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNNITKVG----------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSCCCBCC----------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred -ecChhhhcCccCCEEECCCCCCCccC----------hhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 67777888888888888888887543 233332 456889999999876 55666677 78888
Q ss_pred eecC
Q 039327 312 KVHL 315 (315)
Q Consensus 312 ~l~l 315 (315)
.+++
T Consensus 324 ~l~l 327 (332)
T 2ft3_A 324 AIQF 327 (332)
T ss_dssp TEEC
T ss_pred hhhc
Confidence 7764
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4e-31 Score=239.92 Aligned_cols=161 Identities=12% Similarity=0.139 Sum_probs=128.6
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCcc-cccccccc
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGV-TFPKFLYH 78 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 78 (315)
++++|++|++++|.+.+..+ +.+.++++|++|++++|.+++++.. +.+ .+ +|++|++ ++|.+.+ ..|..+.+
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-s~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGP--LS--SLKYLNL-MGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTT--CT--TCCEEEC-TTCCCSSSCSSCSCTT
T ss_pred cCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHhcc--CC--CCcEEEC-CCCcccccchhhhhhc
Confidence 46789999999998885544 5788899999999999988886554 444 55 8999999 8888875 35667888
Q ss_pred CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceE
Q 039327 79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFS 158 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 158 (315)
+++|++|++++|...+.+|...++.+++|++|++++|.+.+..|..+..+++|++|+++++... .+|..+...+++|++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence 8999999999888555565433588899999999999988888888888999999999888876 677766656888999
Q ss_pred EEeecCcCCC
Q 039327 159 FNISTNALHG 168 (315)
Q Consensus 159 L~l~~n~~~~ 168 (315)
|++++|.+++
T Consensus 201 L~L~~n~l~~ 210 (549)
T 2z81_A 201 LELRDTNLAR 210 (549)
T ss_dssp EEEESCBCTT
T ss_pred EEccCCcccc
Confidence 9999888774
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.3e-30 Score=217.44 Aligned_cols=251 Identities=21% Similarity=0.213 Sum_probs=218.2
Q ss_pred cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
.+++.++++++.++.+|..+.. .++.|++ +++.+++..+..+.++++|++|++++|.+++..|..+ +.+++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~------~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPP------DTALLDL-QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKL 102 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCT------TCCEEEC-CSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTC
T ss_pred CCCeEEEecCCCccccCccCCC------CCeEEEC-CCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCC
Confidence 4799999999999998887543 8999999 9999998777789999999999999999987767774 899999
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCC--CCCccccCCCCCcEEEc
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMNFLRILDL 185 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l 185 (315)
++|++++|.+.. +|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|++|++
T Consensus 103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CEEECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 999999999884 555443 79999999999998 5666555559999999999998863 56778899999999999
Q ss_pred cCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327 186 SSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 186 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
++|.+. .+|... .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 179 ~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 179 ADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp CSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred CCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 999998 677655 378999999999999888889999999999999999999777778999999999999999887
Q ss_pred ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327 266 ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305 (315)
Q Consensus 266 l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 305 (315)
.+|.++..+++|+.|++++|++++..+..+
T Consensus 254 ----------~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 254 ----------KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp ----------SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ----------cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 577789999999999999999996666555
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=217.34 Aligned_cols=268 Identities=24% Similarity=0.323 Sum_probs=158.2
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++|++|++++|.+. .++ .+.++++|++|++++|.++.++ .+.. .+ +|++|++ +++.+.+. +. +..+++
T Consensus 65 ~~~L~~L~l~~n~i~-~~~--~~~~l~~L~~L~L~~n~i~~~~-~~~~--l~--~L~~L~l-~~n~i~~~-~~-~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGNQIT-DIS--PLSNLVKLTNLYIGTNKITDIS-ALQN--LT--NLRELYL-NEDNISDI-SP-LANLTK 133 (347)
T ss_dssp CTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCCG-GGTT--CT--TCSEEEC-TTSCCCCC-GG-GTTCTT
T ss_pred cCCccEEEccCCccc-cch--hhhcCCcCCEEEccCCcccCch-HHcC--CC--cCCEEEC-cCCcccCc-hh-hccCCc
Confidence 567888888888776 344 3777888888888888777754 2333 44 7888888 77777643 22 667777
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
|++|++++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +. .+++|+.+++
T Consensus 134 L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~l 206 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LA-SLTSLHYFTA 206 (347)
T ss_dssp CCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GG-GCTTCCEEEC
T ss_pred eeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-cc-CCCccceeec
Confidence 77777777754433333 3566777777777766654322 556666666666666665 3433 22 2555666666
Q ss_pred ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
.+|.++...+ +..+++|++|++++|.+. .++. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++
T Consensus 207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 207 YVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred ccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 6555552222 455555555555555555 3332 22355555555555555442 234455555555555555543
Q ss_pred ccccccccCCCCcEEEccCCcccc--------------ccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLSD--------------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~~--------------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
. ..+..+++|++|++++|.+.. +++++|.+.+..| +..+++|+.|++++|.++
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 2 234455555555555554332 4455555554444 888999999999999986
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4e-30 Score=218.80 Aligned_cols=259 Identities=22% Similarity=0.233 Sum_probs=221.8
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
+++.++++++.++.+|..+.. +++.|++ +++.+.+..+..+.++++|++|++++|.+++..|..+ +.+++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~------~l~~L~l-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISP------DTTLLDL-QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCT------TCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCC
T ss_pred cCCEEECCCCCccccCCCCCC------CCeEEEC-CCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCC
Confidence 799999999999999887543 8999999 9999997778889999999999999999987667664 8999999
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC--CCCCccccCCCCCcEEEcc
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH--GSIPSSFGNMNFLRILDLS 186 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~ 186 (315)
+|++++|.+.. +|..+. ++|++|++++|.+. .++...+..+++|++|++.+|.++ +..+..+..+ +|++|+++
T Consensus 106 ~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 106 KLYISKNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EEECCSSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EEECCCCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 99999999884 555443 89999999999998 677665556999999999999986 3566677777 99999999
Q ss_pred CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266 (315)
Q Consensus 187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l 266 (315)
+|.+. .+|... .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+.++..+++|++|++++|++.
T Consensus 181 ~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 254 (332)
T 2ft3_A 181 EAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-- 254 (332)
T ss_dssp SSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--
T ss_pred CCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--
Confidence 99998 677665 368999999999999988888999999999999999999877778999999999999999887
Q ss_pred cCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-------ccccceecC
Q 039327 267 TMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-------PLYIKKVHL 315 (315)
Q Consensus 267 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------~~~L~~l~l 315 (315)
.+|.++..+++|+.|++++|.+++..+..+. .++|+.+++
T Consensus 255 ---------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 255 ---------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp ---------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred ---------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 4677899999999999999999966665554 245666553
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.7e-29 Score=224.63 Aligned_cols=284 Identities=24% Similarity=0.279 Sum_probs=205.5
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
++++++|+++++.+. .++ .+..+++|++|++++|.+++++. +.. ++ +|++|++ +++.+.+..+ +.++++
T Consensus 45 l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~--l~--~L~~L~l-~~n~l~~~~~--~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP-LKN--LT--KLVDILM-NNNQIADITP--LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG-GTT--CT--TCCEEEC-CSSCCCCCGG--GTTCTT
T ss_pred hccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh-hhc--cc--cCCEEEC-CCCccccChh--hcCCCC
Confidence 468999999999987 555 58889999999999999998776 554 56 9999999 8898886544 899999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-------------------CCCcCCCCccEEEcccCcCC
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-------------------LPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------~~l~~~~~L~~L~l~~~~~~ 142 (315)
|++|++++|.+++. +. +..+++|++|++++|.+.+... ..+..+++|++|++++|.+.
T Consensus 114 L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 114 LTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence 99999999998854 33 5899999999999998765211 12445566666777666665
Q ss_pred CCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327 143 GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR 222 (315)
Q Consensus 143 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 222 (315)
.++. +.. +++|++|++.+|.+++..| ++.+++|++|++++|.+. .++ . +..+++|+.|++++|.+.+..+
T Consensus 191 -~~~~-l~~-l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 191 -DISV-LAK-LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-T-LASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp -CCGG-GGG-CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCGG--
T ss_pred -CChh-hcc-CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cch-h-hhcCCCCCEEECCCCccccchh--
Confidence 3332 333 6677777777777664333 566777777777777766 333 2 2347778888888887776544
Q ss_pred ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc------------ccCCCCccccCCchhhcccCCCCEE
Q 039327 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD------------ITMPKNHLEGPIPVEFCQLYSLHIL 290 (315)
Q Consensus 223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~------------l~l~~~~l~~~~~~~l~~~~~L~~L 290 (315)
+..+++|++|++++|.+++..+ +..+++|+.|++++|++.. +++++|.+.+..| +..+++|+.|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 6677888888888888775433 6778888888888876543 5667777766544 6677778888
Q ss_pred ecccCccCCCCCCCcc-ccccceecC
Q 039327 291 DISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 291 ~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
++++|.+++. + .+. +++|+.|++
T Consensus 337 ~l~~n~l~~~-~-~l~~l~~L~~L~l 360 (466)
T 1o6v_A 337 FFYNNKVSDV-S-SLANLTNINWLSA 360 (466)
T ss_dssp ECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred ECCCCccCCc-h-hhccCCCCCEEeC
Confidence 8887777743 3 344 777777764
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.4e-29 Score=222.34 Aligned_cols=241 Identities=17% Similarity=0.135 Sum_probs=198.5
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++|++|++++|.+.+ +| .+..+++|++|++++|.++++| +.. ++ +|++|++ ++|.+++. + +.++++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~--l~--~L~~L~L-s~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD--LSQ--NT--NLTYLAC-DSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC--CTT--CT--TCSEEEC-CSSCCSCC-C--CTTCTT
T ss_pred cCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc--ccc--CC--CCCEEEC-cCCCCcee-e--cCCCCc
Confidence 6789999999999984 45 6899999999999999999875 443 55 9999999 88998864 3 889999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEe
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNI 161 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 161 (315)
|++|++++|.+++ ++ ++.+++|++|++++|.+.+. .+..+++|++|++++|...+.++ +.. +++|++|++
T Consensus 108 L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTP-QTQLTTLDC 177 (457)
T ss_dssp CCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CTT-CTTCCEEEC
T ss_pred CCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--ccc-CCcCCEEEC
Confidence 9999999999985 44 48899999999999999863 37889999999999996554553 333 789999999
Q ss_pred ecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 162 STNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
++|.+++ +| +..+++|+.|++++|.+. .++ +..+++|+.|++++|.+++. | +..+++|+.|++++|.+++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence 9999984 55 788999999999999998 443 33689999999999999884 3 6788999999999999986
Q ss_pred ccccccccCCCCcEEEccCCccccccCCCCccccCCc
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP 278 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~ 278 (315)
.. .+.+++|+.|++++|.+..+++++|.+.+.+|
T Consensus 248 ~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 248 LD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred cC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence 43 45677888888888888877777776655544
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-29 Score=219.15 Aligned_cols=266 Identities=20% Similarity=0.215 Sum_probs=207.7
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccc-cccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITE-SHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
+++|++|++++|.+.+ ++...+.++++|++|++++|.++.++.. +.+ ++ +|++|++ ++|.+....+..+.+++
T Consensus 68 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-~~n~l~~l~~~~~~~l~ 141 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN--VP--LLTVLVL-ERNDLSSLPRGIFHNTP 141 (390)
T ss_dssp CCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CT--TCCEEEC-CSSCCCCCCTTTTTTCT
T ss_pred cccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcC--CC--CCCEEEC-CCCccCcCCHHHhcCCC
Confidence 6789999999999874 4435788999999999999999886544 343 55 8999999 88888854444568899
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCC-------------------ccEEEcccCcC
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR-------------------LRFLDVSNNNF 141 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-------------------L~~L~l~~~~~ 141 (315)
+|++|++++|.+++..+.. ++.+++|++|++++|.+.+.. +..+++ |++|++++|.+
T Consensus 142 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCee
Confidence 9999999999988655555 488899999999999887532 333444 45555555555
Q ss_pred CCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccc
Q 039327 142 QGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFC 221 (315)
Q Consensus 142 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 221 (315)
. .+|... .++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+. +.
T Consensus 218 ~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~-~~ 289 (390)
T 3o6n_A 218 N-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVAL-NL 289 (390)
T ss_dssp C-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-TTCSSCCEEECCSSCCCEE-EC
T ss_pred e-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc-cccccCCEEECCCCcCccc-Cc
Confidence 4 333322 46899999999988843 468899999999999999984445444 4699999999999999874 45
Q ss_pred cccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327 222 RNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299 (315)
Q Consensus 222 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 299 (315)
.+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+..+ + +..+++|+.|++++|++..
T Consensus 290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-----------~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-----------K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-----------C--CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-----------C--chhhccCCEEEcCCCCccc
Confidence 5577899999999999998 6677788899999999999998742 2 5678899999999999864
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.6e-29 Score=228.97 Aligned_cols=133 Identities=19% Similarity=0.185 Sum_probs=99.3
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
.+++|+|++|.|+ .++..+|.++++|++|+|++|.+++++..... .++ +|++|++ ++|.++...+..+.++++|+
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~-~L~--~L~~L~L-s~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLS--HLSTLIL-TGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCT--TCCEEEC-TTCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhc-CCC--CCCEEEc-cCCcCCCCCHHHhcCCCCCC
Confidence 6788888888887 45546788888888888888888886654322 244 8888888 88888766666788888888
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcC-cCcCCCcCCCCccEEEcccCcCC
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGG-PFRLPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~ 142 (315)
+|++++|.+++ ++...++.+++|++|++++|.+.. ..|..+..+++|++|++++|.+.
T Consensus 128 ~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 128 KLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 88888888874 343335788888888888888765 34566777888888888777654
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=216.68 Aligned_cols=277 Identities=20% Similarity=0.172 Sum_probs=223.9
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+.....+.+++.++ .+|. .+. ++|++|++++|.+++++. .+.+ ++ +|++|++ ++|.+.+..+..+.++++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQR--CV--NLQALVL-TSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp CTTSEEECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTT--CT--TCCEEEC-TTSCCCEECTTTTTTCTT
T ss_pred CCCeEeeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhcc--CC--CCCEEEC-CCCccCccCHhhcCCCCC
Confidence 44456788888887 6663 332 589999999999998766 4443 55 9999999 999999877888999999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCc-CCCCCchhhhhcCCCceEE
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNN-FQGHIPVEIGDILPSLFSF 159 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L 159 (315)
|++|++++|.++ .++...++.+++|++|++++|.+..... ..+..+++|++|++++|. +. .++...+..+++|++|
T Consensus 102 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEE
T ss_pred CCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEE
Confidence 999999999998 4565546899999999999999985433 478899999999999984 55 5544444448999999
Q ss_pred EeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccccc---CCCCCCEEEcCC
Q 039327 160 NISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNF---NLANLRQLQLED 236 (315)
Q Consensus 160 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~ 236 (315)
++++|.+++..|..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+. ....++.+++.+
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 99999999777888999999999999999987 77776665689999999999999876544332 466788899988
Q ss_pred Ccccc----ccccccccCCCCcEEEccCCccccccCCCCccccCCchh-hcccCCCCEEecccCccCCCCC
Q 039327 237 NRFIG----EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVE-FCQLYSLHILDISDNNISGSLP 302 (315)
Q Consensus 237 n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~ 302 (315)
+.+.+ .+|.++..+++|++|++++|+++. +|.. |..+++|+.|++++|++.+..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-----------i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKS-----------VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCc-----------cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 88765 367778899999999999998874 4444 6889999999999999986554
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.5e-29 Score=228.30 Aligned_cols=268 Identities=19% Similarity=0.187 Sum_probs=189.9
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCC
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHD 81 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 81 (315)
+++|++|++++|.+.+..+ ..+.++++|++|++++|.+++++..... .++ +|++|++ ++|.+.+..+..+.++++
T Consensus 74 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~--~L~~L~L-~~n~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVP--LLTVLVL-ERNDLSSLPRGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTT-TCT--TCCEEEC-CSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCcCCCCCHHHHc-CCC--CCCEEEe-eCCCCCCCCHHHhccCCC
Confidence 6789999999999985444 5889999999999999999986655322 255 8999999 888988655556789999
Q ss_pred CCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC------------------
Q 039327 82 LEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG------------------ 143 (315)
Q Consensus 82 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------------ 143 (315)
|++|++++|.+++..|..+ +.+++|++|++++|.+.+.. +..+++|++|++++|.+.+
T Consensus 149 L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred CCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 9999999999987666664 88999999999999887632 4445666666666555441
Q ss_pred CCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccc
Q 039327 144 HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN 223 (315)
Q Consensus 144 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 223 (315)
.++... .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+. +..+
T Consensus 225 ~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~ 297 (597)
T 3oja_B 225 VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL-NLYG 297 (597)
T ss_dssp EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCEE-ECSS
T ss_pred cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCCC-Cccc
Confidence 222111 2456666666666653 24566677777777777776644444433 466777777777776653 3444
Q ss_pred cCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327 224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299 (315)
Q Consensus 224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 299 (315)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.. ++ +..+++|+.|++++|++.+
T Consensus 298 ~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-----------~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-----------LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-----------CC--CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-----------cC--hhhcCCCCEEEeeCCCCCC
Confidence 55667777777777766 455566666777777777776653 22 5678899999999999863
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.9e-28 Score=207.83 Aligned_cols=225 Identities=20% Similarity=0.228 Sum_probs=143.4
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+++.|++ +++.+. .+|..+.++++|++|++++|.++ .+|..+ +.+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 82 ~l~~L~L-~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 82 GRVALEL-RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TCCEEEE-ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ceeEEEc-cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 5556666 555555 45555555566666666666555 555443 55566666666666555 4455555566666666
Q ss_pred cccCcCCCCCchhhh--------hcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccE
Q 039327 136 VSNNNFQGHIPVEIG--------DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF 207 (315)
Q Consensus 136 l~~~~~~~~~~~~~~--------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 207 (315)
+++|...+.+|..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCE
Confidence 655554445554432 12667777777777766 56666777777777777777776 4555443 4677777
Q ss_pred EEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCC
Q 039327 208 LALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSL 287 (315)
Q Consensus 208 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L 287 (315)
|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +.+|.+++.++++
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~----------~~iP~~l~~L~~L 303 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL----------SRLPSLIAQLPAN 303 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC----------CCCCGGGGGSCTT
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch----------hhccHHHhhccCc
Confidence 777777776666667777777777777777776677777777777777777766543 2667777777777
Q ss_pred CEEecccCccC
Q 039327 288 HILDISDNNIS 298 (315)
Q Consensus 288 ~~L~l~~n~~~ 298 (315)
+.+++..+.+.
T Consensus 304 ~~l~l~~~~~~ 314 (328)
T 4fcg_A 304 CIILVPPHLQA 314 (328)
T ss_dssp CEEECCGGGSC
T ss_pred eEEeCCHHHHH
Confidence 77777766554
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=215.37 Aligned_cols=248 Identities=20% Similarity=0.178 Sum_probs=201.2
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
..+.++.++..++.+|..+.. +++.|++ ++|.+....+..+.++++|+.|++++|.++...+.. +..+++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~------~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIST------NTRLLNL-HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLN 115 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCT------TCSEEEC-CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCC
T ss_pred CCCEEEeCCCCcCcCCCCCCC------CCcEEEc-cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCC
Confidence 466788888888888887554 8899999 888888777788889999999999999887554444 58889999
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCc-CCCCCCccccCCCCCcEEEccC
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNA-LHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
+|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++.+|. +....+..|..+++|++|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 9999999888766667888999999999999887 6666555558899999998854 4433344688889999999999
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccccc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~ 267 (315)
|.+. .+|. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..+.
T Consensus 195 n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 195 CNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp SCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 9887 6664 335888999999999988888888888999999999999998777888888899999999988877533
Q ss_pred CCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
+..+..+++|+.|++++|.+.
T Consensus 272 ----------~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 ----------HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ----------TTTTSSCTTCCEEECCSSCEE
T ss_pred ----------hhHhccccCCCEEEcCCCCcc
Confidence 566788889999999988764
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=207.49 Aligned_cols=247 Identities=21% Similarity=0.200 Sum_probs=172.1
Q ss_pred ceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccc--cccccccCCCCC
Q 039327 6 EELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT--FPKFLYHQHDLE 83 (315)
Q Consensus 6 ~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~ 83 (315)
+.++.+++.++ .+|. .+ .++|++|++++|.++.+|..+.. .++ +|++|++ ++|.+... .+..+..+++|+
T Consensus 10 ~~l~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~-~l~--~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFD-KLT--QLTKLSL-SSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCCCCTTTTT-TCT--TCSEEEC-CSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcc-cCCC-CC--CCCCCEEECCCCccCccCHhHhh-ccc--cCCEEEC-CCCccCcccCcccccccccccC
Confidence 45677777765 5553 22 25788888888888776665322 245 7888888 77777632 255566778888
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS 162 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (315)
+|++++|.++ .+|.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.. +++|++|+++
T Consensus 82 ~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~ 158 (306)
T 2z66_A 82 YLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMA 158 (306)
T ss_dssp EEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECT
T ss_pred EEECCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECC
Confidence 8888888776 34544 3677888888888887765443 46777788888888888776444444433 7788888888
Q ss_pred cCcCCC-CCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 163 TNALHG-SIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 163 ~n~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
+|.+++ ..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH-hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 887764 45667777888888888888777333333 3357788888888888777666667777888888888888877
Q ss_pred ccccccccCC-CCcEEEccCCccc
Q 039327 242 EIPQSLSKCS-SLEGLYLNNNSLS 264 (315)
Q Consensus 242 ~~~~~~~~~~-~L~~L~l~~n~i~ 264 (315)
..+..+..++ +|++|++++|.+.
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHHHhhhccCCEEEccCCCee
Confidence 7777777764 7888888877765
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-28 Score=203.80 Aligned_cols=224 Identities=20% Similarity=0.143 Sum_probs=176.1
Q ss_pred ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327 31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL 110 (315)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 110 (315)
++++++++.++.+|..+.. ++++|++ +++.+.+..+..+..+++|++|++++|.+++..+.. +..+++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~~------~l~~L~l-~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPA------ASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTTCCT------TCSEEEC-TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcCCCC------CceEEEe-eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEE
Confidence 5677777778777776433 7888888 888888766677888888888888888887655655 4788888888
Q ss_pred EeecCC-CcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327 111 FLINDS-IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ 189 (315)
Q Consensus 111 ~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 189 (315)
++++|. +....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 888886 66655777888888888888888887 4444433447888888888888886555667888888889988888
Q ss_pred ccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 190 LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 165 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 87 566555556888889999988888877888888888999999998888766677888888999998888765
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.8e-28 Score=206.77 Aligned_cols=227 Identities=15% Similarity=0.169 Sum_probs=194.3
Q ss_pred CcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccc
Q 039327 27 HSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK 106 (315)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 106 (315)
.+++++|++++|.++.+|..+.+ ++ +|++|++ ++|.+. .+|..+.++++|++|++++|.++ .+|..+ ..+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~--l~--~L~~L~L-~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR--LS--HLQHMTI-DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG--GT--TCSEEEE-ESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTT
T ss_pred ccceeEEEccCCCchhcChhhhh--CC--CCCEEEC-CCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcC
Confidence 46788888888888888877665 55 8888888 888887 78888888889999999988888 777774 78889
Q ss_pred cceeEeecCCCcCcCcCCCcC---------CCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCC
Q 039327 107 LETLFLINDSIGGPFRLPIHP---------HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 177 (315)
Q Consensus 107 L~~L~l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~ 177 (315)
|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l 228 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHL 228 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGC
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccC
Confidence 999999988777777776654 899999999999998 88888776 889999999999998 566678999
Q ss_pred CCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEE
Q 039327 178 NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLY 257 (315)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 257 (315)
++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..++.+++++.++
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 9999999999988877777665 689999999999998888888899999999999999999989999999999999999
Q ss_pred ccCCcccc
Q 039327 258 LNNNSLSD 265 (315)
Q Consensus 258 l~~n~i~~ 265 (315)
+..+.+..
T Consensus 308 l~~~~~~~ 315 (328)
T 4fcg_A 308 VPPHLQAQ 315 (328)
T ss_dssp CCGGGSCC
T ss_pred CCHHHHHH
Confidence 98776554
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.3e-28 Score=215.47 Aligned_cols=248 Identities=20% Similarity=0.173 Sum_probs=198.2
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
..+.++.++..++.+|..+.. ++++|++ ++|.+.+..+..+.++++|+.|++++|.+++..+.. +..+++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~------~l~~L~L-~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPS------NTRYLNL-MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLN 126 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCT------TCSEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCC
T ss_pred CCcEEEECCCCcCccCCCCCC------CccEEEC-cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCC
Confidence 356788888888888877544 8899999 888888877888888999999999999887655555 47888999
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC-cCCCCCCccccCCCCCcEEEccC
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN-ALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
+|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++.+| .+....+..+..+++|++|++++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 9999999888766677888899999999998887 666655555889999999884 44433344678888999999999
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccccc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~ 267 (315)
|.+. .+|. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++..+.
T Consensus 206 n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 206 CNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp SCCS-SCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Cccc-cccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 9887 5553 235888999999999988888888888899999999999988777888888889999999888877432
Q ss_pred CCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
+..+..+++|+.|++++|.+.
T Consensus 283 ----------~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 ----------HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ----------TTSSTTCTTCCEEECCSSCEE
T ss_pred ----------hHHhccccCCCEEEccCCCcC
Confidence 456778888999999988764
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.2e-27 Score=211.59 Aligned_cols=263 Identities=19% Similarity=0.202 Sum_probs=194.3
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
++++|++|++++|.+.+ ++ +..+++|++|++++|.+++++ +.. ++ +|++|++ ++|.+.+ ++ +..++
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~--l~--~L~~L~L-~~N~l~~-l~--~~~l~ 127 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTP--LT--KLTYLNC-DTNKLTK-LD--VSQNP 127 (457)
T ss_dssp GCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTT--CT--TCCEEEC-CSSCCSC-CC--CTTCT
T ss_pred ccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCC--CC--cCCEEEC-CCCcCCe-ec--CCCCC
Confidence 36889999999999984 33 788999999999999998875 443 55 8999999 8888886 34 78899
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 160 (315)
+|++|++++|.+++ ++ ++.+++|++|++++|...+.+ .+..+++|++|++++|.++ .+| +.. +++|+.|+
T Consensus 128 ~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l~~-l~~L~~L~ 197 (457)
T 3bz5_A 128 LLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQ-NKLLNRLN 197 (457)
T ss_dssp TCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC--CTT-CTTCCEEE
T ss_pred cCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec--ccc-CCCCCEEE
Confidence 99999999999986 33 478899999999999655444 4778899999999999988 566 333 78999999
Q ss_pred eecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCC-------CCCEEE
Q 039327 161 ISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLA-------NLRQLQ 233 (315)
Q Consensus 161 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-------~L~~L~ 233 (315)
+++|.+++. .++.+++|++|++++|.+. .+| +..+++|+.|++++|.+.+..+..+..+. +|+.++
T Consensus 198 l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 198 CDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp CCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred CcCCcCCee---ccccCCCCCEEECcCCccc-ccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEE
Confidence 999988853 3788899999999999988 466 33588899999999988876544333322 344555
Q ss_pred cCCCccccccccccccCCCCcEEEccCCc----------------------cccccCCCCccccCCchhhcccCCCCEEe
Q 039327 234 LEDNRFIGEIPQSLSKCSSLEGLYLNNNS----------------------LSDITMPKNHLEGPIPVEFCQLYSLHILD 291 (315)
Q Consensus 234 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~----------------------i~~l~l~~~~l~~~~~~~l~~~~~L~~L~ 291 (315)
+++|.+.+.+| .+.+++|+.|++++|. +..+++++|++++ ++ ++.+++|+.|+
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLS 345 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEE
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEE
Confidence 55555444444 3456777777777764 2234455555554 22 56666666677
Q ss_pred cccCccCC
Q 039327 292 ISDNNISG 299 (315)
Q Consensus 292 l~~n~~~~ 299 (315)
+++|++++
T Consensus 346 l~~N~l~~ 353 (457)
T 3bz5_A 346 CVNAHIQD 353 (457)
T ss_dssp CCSSCCCB
T ss_pred CCCCCCCC
Confidence 76666663
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-28 Score=205.83 Aligned_cols=249 Identities=18% Similarity=0.157 Sum_probs=183.1
Q ss_pred ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceeccc--CChhhhhcccccc
Q 039327 31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK--FPNWLLENNAKLE 108 (315)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~ 108 (315)
+.++++++.++.+|..+.. ++++|++ +++.+....+..+.++++|++|++++|.++.. .+..+ ..+++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~~~------~l~~L~L-~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPS------SATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSCCCT------TCCEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCC
T ss_pred CEEEcCCCCcccCCCCCCC------CCCEEEC-CCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccC
Confidence 5677777778777776443 7888888 77777744444567888888888888877632 24443 5678888
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
+|++++|.+.. ++..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 88888888763 5556778888888888888877 4443 3333477888888888888766677778888888888888
Q ss_pred ccccC-cCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327 188 NQLTG-EIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266 (315)
Q Consensus 188 n~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l 266 (315)
|.+.+ ..|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 160 n~l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 237 (306)
T 2z66_A 160 NSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT- 237 (306)
T ss_dssp CEEGGGEECSC-CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-
T ss_pred CccccccchhH-HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-
Confidence 88774 23433 3457888888888888887777777788888888888888876666677778888888888887664
Q ss_pred cCCCCccccCCchhhcccC-CCCEEecccCccCCC
Q 039327 267 TMPKNHLEGPIPVEFCQLY-SLHILDISDNNISGS 300 (315)
Q Consensus 267 ~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~~~~~ 300 (315)
..+..+..++ +|+.|++++|.++..
T Consensus 238 ---------~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 238 ---------SKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ---------CSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ---------cCHHHHHhhhccCCEEEccCCCeecc
Confidence 3456677774 788888888887643
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=211.58 Aligned_cols=275 Identities=18% Similarity=0.148 Sum_probs=220.4
Q ss_pred cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327 24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN 103 (315)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (315)
...|+.....+++++.++.+|..+.. ++++|++ +++.+.+..+..+.++++|++|++++|.+++..+.. ++.
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~~~~~------~L~~L~l-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~ 98 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPSGLTE------AVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSS 98 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCTTCCT------TCCEEEC-TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTT
T ss_pred CCCCCCCeEeeCCCCCcccccccccc------cCcEEEC-CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCC
Confidence 34566777789999999999987554 8999999 999998766668999999999999999998665665 488
Q ss_pred ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecC-cCCCCCCccccCCCCCc
Q 039327 104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTN-ALHGSIPSSFGNMNFLR 181 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~ 181 (315)
+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|. ..+..+++|++|++++| .+....+..+..+++|+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 999999999999998655555889999999999999998 6776 44445899999999998 46655567889999999
Q ss_pred EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccc---cCCCCcEEEc
Q 039327 182 ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLS---KCSSLEGLYL 258 (315)
Q Consensus 182 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l 258 (315)
+|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|+.|++++|.+++..+..+. ..+.++.+++
T Consensus 178 ~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred EEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 999999999855455544 689999999999998765555555689999999999998865443332 3567788888
Q ss_pred cCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCC-cc-ccccceecC
Q 039327 259 NNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSC-FH-PLYIKKVHL 315 (315)
Q Consensus 259 ~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-~~-~~~L~~l~l 315 (315)
+++.+.. +.+. .+|.++..+++|+.|++++|+++ .+|.. +. +++|++|++
T Consensus 257 ~~~~l~~-----~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 257 RNVKITD-----ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp ESCBCCH-----HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred ccccccC-----cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence 8776553 2222 46788999999999999999999 66665 46 999999875
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.1e-27 Score=217.82 Aligned_cols=298 Identities=21% Similarity=0.191 Sum_probs=209.4
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
++++|++|+|++|.+. .++.++|.++++|++|+|++|.++++|..... .+. +|++|++ +.|.+++..+..+.+++
T Consensus 74 ~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~-~L~--~L~~L~L-s~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLS--SLQKLVA-VETNLASLENFPIGHLK 148 (635)
T ss_dssp TCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGT-TCT--TCCEEEC-TTSCCCCSTTCCCTTCT
T ss_pred CCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhc-CCC--CCCEEEC-CCCcCCCCChhhhhcCc
Confidence 4788999999999997 45546789999999999999999887765432 244 8999999 88888866666788888
Q ss_pred CCCeEEecCceecc-cCChhhhhcccccceeEeecCCCcCcCcCCC----------------------------------
Q 039327 81 DLEDVHLSHIKMNG-KFPNWLLENNAKLETLFLINDSIGGPFRLPI---------------------------------- 125 (315)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---------------------------------- 125 (315)
+|++|++++|.++. ..|.. ++.+++|++|++++|.+.+..+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 88888888888764 34554 4778888888887775543111100
Q ss_pred --------------------------------------------------------------------------------
Q 039327 126 -------------------------------------------------------------------------------- 125 (315)
Q Consensus 126 -------------------------------------------------------------------------------- 125 (315)
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence
Q ss_pred -----------------cCCCCccEEEcccCcCCC---------------------------------------------
Q 039327 126 -----------------HPHRRLRFLDVSNNNFQG--------------------------------------------- 143 (315)
Q Consensus 126 -----------------~~~~~L~~L~l~~~~~~~--------------------------------------------- 143 (315)
.....++.|++.++.+..
T Consensus 308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence 001122333333222110
Q ss_pred CCchhhhh----------------------cCCCceEEEeecCcCCCCC-CccccCCCCCcEEEccCccccCcCchhhcc
Q 039327 144 HIPVEIGD----------------------ILPSLFSFNISTNALHGSI-PSSFGNMNFLRILDLSSNQLTGEIPERLAV 200 (315)
Q Consensus 144 ~~~~~~~~----------------------~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 200 (315)
..+..... .+++|+.+++..+...... +..+..+++++.++++.|.+. ..+...+.
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~-~~~~~~~~ 466 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 466 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCE-ECCTTTTT
T ss_pred ccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc-cccccccc
Confidence 00000000 1233344444433333222 345778889999999999988 44444455
Q ss_pred CCCcccEEEccCCCCC-CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCch
Q 039327 201 GCVNLEFLALSNNNLK-GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPV 279 (315)
Q Consensus 201 ~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~ 279 (315)
.++.++.|++++|... ...|..+..+++|++|++++|++++..|.++..+++|++|++++|+|..+. +.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~----------~~ 536 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD----------TF 536 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC----------CG
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC----------hh
Confidence 7889999999998744 456778888999999999999999888888999999999999999887533 67
Q ss_pred hhcccCCCCEEecccCccCCCCCCCcc-c-cccceecC
Q 039327 280 EFCQLYSLHILDISDNNISGSLPSCFH-P-LYIKKVHL 315 (315)
Q Consensus 280 ~l~~~~~L~~L~l~~n~~~~~~~~~~~-~-~~L~~l~l 315 (315)
+|..+++|+.|++++|++++..|..+. + ++|++|++
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 788899999999999999988888887 5 68888875
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.1e-29 Score=214.05 Aligned_cols=250 Identities=21% Similarity=0.229 Sum_probs=179.7
Q ss_pred cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCc-cccccccc-------cCCCCCeEEecCceeccc
Q 039327 24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDG-VTFPKFLY-------HQHDLEDVHLSHIKMNGK 95 (315)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~-------~~~~L~~L~l~~~~~~~~ 95 (315)
+...++|++|++++|.+ .+|..+.. .++.|++ +++.+. ..++..+. ++++|++|++++|.+++.
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~------~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTD------IIKSLSL-KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHH------HHHHCCC-CEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EccCCCceeEeeccccc-ccHHHHHH------HHhhccc-ccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 44566788888888888 76766544 4778888 767763 34555444 678888888888888877
Q ss_pred CChhhh-hcccccceeEeecCCCcCcCcCCCcCC-----CCccEEEcccCcCCCCCc-hhhhhcCCCceEEEeecCcCCC
Q 039327 96 FPNWLL-ENNAKLETLFLINDSIGGPFRLPIHPH-----RRLRFLDVSNNNFQGHIP-VEIGDILPSLFSFNISTNALHG 168 (315)
Q Consensus 96 ~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~ 168 (315)
+|..++ +.+++|++|++++|.+.+. |..+..+ ++|++|++++|.+. .++ ..+. .+++|++|++++|.+.+
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~-~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR-VFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCC-CCSSCCEEECCSCTTCH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhc-cCCCCCEEECCCCCcCc
Confidence 777643 6788888888888888765 6555555 78888888888887 444 4444 37888888888887653
Q ss_pred C--CCccc--cCCCCCcEEEccCccccC--cCchhhccCCCcccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccc
Q 039327 169 S--IPSSF--GNMNFLRILDLSSNQLTG--EIPERLAVGCVNLEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 169 ~--~~~~l--~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~ 241 (315)
. .+..+ ..+++|++|++++|.+.+ .++..++..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 3 22333 778888888888888762 2333444467888888888888877553 44556788888888888887
Q ss_pred ccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCC
Q 039327 242 EIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISG 299 (315)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 299 (315)
.+|..+. ++|++|++++|+++. +|. +..+++|+.|++++|++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~-----------~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDR-----------NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCS-----------CCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCC-----------Chh-HhhCCCCCEEeccCCCCCC
Confidence 6666655 778888888887763 344 7778888888888888874
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=7.8e-31 Score=233.05 Aligned_cols=237 Identities=19% Similarity=0.135 Sum_probs=139.0
Q ss_pred CCccceEEeecCcccc----cCCCcccCCCcccceeecccccccc-cccccccCC-CCccccEEEEeccCCCCcc----c
Q 039327 2 LTSIEELYLSNNHFQI----PISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLT-APNFQLQSLLLSSGYGDGV----T 71 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~ 71 (315)
+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+ .+..+.... ....+|++|++ ++|.+++ .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L-~~n~i~~~~~~~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL-QNCCLTGAGCGV 104 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC-TTSCCBGGGHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEc-cCCCCCHHHHHH
Confidence 4677888888887762 223 356667888888888887765 222222100 11115888888 7777774 3
Q ss_pred cccccccCCCCCeEEecCceecccCChhh----hhcccccceeEeecCCCcCcC----cCCCcCCCCccEEEcccCcCCC
Q 039327 72 FPKFLYHQHDLEDVHLSHIKMNGKFPNWL----LENNAKLETLFLINDSIGGPF----RLPIHPHRRLRFLDVSNNNFQG 143 (315)
Q Consensus 72 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~ 143 (315)
++..+..+++|++|++++|.+++..+..+ ....++|++|++++|.+.+.. +..+..+++|++|++++|.+.+
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 56777788888888888888765444332 122456777877777776532 3445556777777777776653
Q ss_pred CCchhhhh----cCCCceEEEeecCcCCCC----CCccccCCCCCcEEEccCccccCcC----chhhccCCCcccEEEcc
Q 039327 144 HIPVEIGD----ILPSLFSFNISTNALHGS----IPSSFGNMNFLRILDLSSNQLTGEI----PERLAVGCVNLEFLALS 211 (315)
Q Consensus 144 ~~~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~~L~~L~l~ 211 (315)
..+..+.. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+.. ...++..+++|+.|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 22222221 234677777777766632 3445556667777777776655221 12222235566666666
Q ss_pred CCCCCCc----ccccccCCCCCCEEEcCCCccc
Q 039327 212 NNNLKGH----MFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 212 ~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+|.++.. .+..+..+++|++|++++|.++
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 6665542 2333444555666666655554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=9.9e-27 Score=206.00 Aligned_cols=242 Identities=24% Similarity=0.231 Sum_probs=207.2
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
..+.++. .+..++ .+|..+. ++++.|++++|.+++..+.. +..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 55 ~~~~v~c-~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVC-TRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEEC-CSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEE-CCCCcC-ccCCCCC--CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 3567777 666665 4665443 68999999999998766666 48999999999999999988888999999999999
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++++|...+.++...+..+++|+.|++++|.+
T Consensus 130 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 9999998 677766666999999999999999666668899999999999996555577777777899999999999999
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (315)
.+. + .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..+ .+.+|..+++|+.|++++|
T Consensus 209 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 209 KDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI----------ERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp SSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE----------CTTTTTTCTTCCEEECCSS
T ss_pred ccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE----------CHHHhcCCCCCCEEECCCC
Confidence 875 2 477899999999999999988899999999999999999988753 3778999999999999999
Q ss_pred ccCCCCCCCcc-ccccceecC
Q 039327 296 NISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 296 ~~~~~~~~~~~-~~~L~~l~l 315 (315)
.+++..+..+. +++|+.|++
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEEC
T ss_pred cCCccChHHhccccCCCEEEc
Confidence 99977777777 899999875
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3e-26 Score=202.37 Aligned_cols=261 Identities=25% Similarity=0.306 Sum_probs=161.3
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
+|++|++++|.+.+ +|. .+++|++|++++|.+++++.. .+ +|++|++ ++|.+.+ +| .+.++++|+
T Consensus 92 ~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~-----~~--~L~~L~L-~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL-----PP--LLEYLGV-SNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp TCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC-----CT--TCCEEEC-CSSCCSS-CC-CCTTCTTCC
T ss_pred CCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC-----CC--CCCEEEC-cCCCCCC-Cc-ccCCCCCCC
Confidence 45555555555543 331 124566666666666554332 12 7888888 7777775 56 477888888
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST 163 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (315)
+|++++|.+++ +|.. .++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|.. .++|++|++++
T Consensus 157 ~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~ 224 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGN 224 (454)
T ss_dssp EEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCS
T ss_pred EEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcC
Confidence 88888888774 5542 3578888888888775 44 5778888888888888776 45432 35788888888
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc--
Q 039327 164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG-- 241 (315)
Q Consensus 164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-- 241 (315)
|.++ .+|. +..+++|++|++++|.+. .+|. .+++|+.|++++|.+.+. |. .+++|++|++++|.+++
T Consensus 225 n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 225 NILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SCCS-SCCC-CTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEES
T ss_pred CcCC-cccc-cCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCccc
Confidence 8777 5663 777888888888888776 4443 145667777777666552 21 12455555555555543
Q ss_pred ccccc-------------cccC-CCCcEEEccCCcccc----------ccCCCCccccCCchhhcccCCCCEEecccCcc
Q 039327 242 EIPQS-------------LSKC-SSLEGLYLNNNSLSD----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNI 297 (315)
Q Consensus 242 ~~~~~-------------~~~~-~~L~~L~l~~n~i~~----------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~ 297 (315)
..+.. +..+ ++|++|++++|++.. +++++|.++ .+|. .+++|+.|++++|++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 11110 1112 356666666665443 445555555 3444 356677777777777
Q ss_pred CC--CCCCCcc
Q 039327 298 SG--SLPSCFH 306 (315)
Q Consensus 298 ~~--~~~~~~~ 306 (315)
++ .+|..+.
T Consensus 370 ~~l~~ip~~l~ 380 (454)
T 1jl5_A 370 REFPDIPESVE 380 (454)
T ss_dssp SSCCCCCTTCC
T ss_pred CcCCCChHHHH
Confidence 76 5566655
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=204.34 Aligned_cols=247 Identities=19% Similarity=0.155 Sum_probs=196.0
Q ss_pred cceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
.+.++.++..+. .+|. .+. ++++.|+|++|.++.++ ..+.+ ++ +|++|++ ++|.+....+..+.++++|+
T Consensus 45 ~~~v~c~~~~l~-~iP~-~~~--~~l~~L~L~~n~i~~~~~~~~~~--l~--~L~~L~L-s~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPD-GIS--TNTRLLNLHENQIQIIKVNSFKH--LR--HLEILQL-SRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCS-SCCS-CCC--TTCSEEECCSCCCCEECTTTTSS--CS--SCCEEEC-CSSCCCEECGGGGTTCSSCC
T ss_pred CCEEEeCCCCcC-cCCC-CCC--CCCcEEEccCCcCCeeCHHHhhC--CC--CCCEEEC-CCCcCCccChhhccCCccCC
Confidence 456677777776 5663 332 57899999999988855 34433 55 8999999 88888877778888999999
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST 163 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (315)
+|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|+++++...+.++...+..+++|++|++++
T Consensus 116 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 116 TLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred EEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 9999999888 444433588899999999999988766778889999999999885444466665555688999999999
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327 164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243 (315)
Q Consensus 164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (315)
|.++ .+| .+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 195 n~l~-~~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp SCCS-SCC-CCTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcCc-ccc-ccCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 9888 555 4788889999999999888 444444557889999999999998888888888999999999999998776
Q ss_pred ccccccCCCCcEEEccCCccc
Q 039327 244 PQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 244 ~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+..+..+++|+.|++++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 777788899999999988754
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.5e-28 Score=207.64 Aligned_cols=268 Identities=15% Similarity=0.108 Sum_probs=200.4
Q ss_pred cceEEeecCcccccCCCcccCCCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
++..+++.+.+..... ..+..+++|++|++++|.+++++ ..+.+ ++ +|++|++ ++|.+.+..+ +..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~--~L~~L~L-s~n~l~~~~~--~~~l~~L~ 83 (317)
T 3o53_A 12 YKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAP--FT--KLELLNL-SSNVLYETLD--LESLSTLR 83 (317)
T ss_dssp EEEESCCTTTHHHHHH-HHHTTGGGCSEEECTTSCCCCCCHHHHTT--CT--TCCEEEC-TTSCCEEEEE--ETTCTTCC
T ss_pred eeEeeccccchhhhHH-HHhccCCCCCEEECcCCccCcCCHHHhhC--CC--cCCEEEC-CCCcCCcchh--hhhcCCCC
Confidence 4445555555542222 34556778999999999998854 44444 55 8999999 8888876554 88899999
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST 163 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (315)
+|++++|.+++. + ..++|++|++++|.+.+..+. .+++|++|++++|.++ .++...+..+++|++|++++
T Consensus 84 ~L~Ls~n~l~~l-~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 84 TLDLNNNYVQEL-L-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp EEECCSSEEEEE-E-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTT
T ss_pred EEECcCCccccc-c-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCC
Confidence 999999988742 2 347899999999988765443 3578999999999988 45443333478999999999
Q ss_pred CcCCCCCCccc-cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327 164 NALHGSIPSSF-GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242 (315)
Q Consensus 164 n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (315)
|.+++..+..+ ..+++|++|++++|.+. .++... .+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++ .
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~ 228 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-L 228 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-E
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-c
Confidence 98886555555 46889999999999887 555443 38889999999999887544 4778899999999999988 5
Q ss_pred cccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC-ccCCCCCCC
Q 039327 243 IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN-NISGSLPSC 304 (315)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~ 304 (315)
+|..+..+++|+.|++++|.+.. +.++.++..+++|+.+++.++ .+++..|..
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~---------~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHC---------GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBH---------HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hhhHhhcCCCCCEEEccCCCccC---------cCHHHHHhccccceEEECCCchhccCCchhc
Confidence 67778888999999999887762 145778888888999988854 455555444
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.6e-26 Score=191.10 Aligned_cols=227 Identities=20% Similarity=0.188 Sum_probs=193.0
Q ss_pred EEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcc
Q 039327 58 QSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVS 137 (315)
Q Consensus 58 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 137 (315)
++++. ++..+. .+|..+ .++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 14 ~~~~c-~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSC-PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEEC-CSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEc-CcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 56777 666666 355433 578999999999998655555 5899999999999999998778899999999999999
Q ss_pred cCc-CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCC
Q 039327 138 NNN-FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLK 216 (315)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 216 (315)
+|. +. .++...+..+++|++|++.+|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.++
T Consensus 89 ~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 89 DNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp SCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccc
Confidence 997 66 664444444899999999999999777888999999999999999998 666665567999999999999999
Q ss_pred CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCc
Q 039327 217 GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNN 296 (315)
Q Consensus 217 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 296 (315)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+.++..+++|+.|++++|+
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA----------LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC----------CCHHHHTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc----------CCHHHcccCcccCEEeccCCC
Confidence 8777788899999999999999998888999999999999999998874 335679999999999999999
Q ss_pred cCCCC
Q 039327 297 ISGSL 301 (315)
Q Consensus 297 ~~~~~ 301 (315)
+....
T Consensus 237 ~~c~~ 241 (285)
T 1ozn_A 237 WVCDC 241 (285)
T ss_dssp EECSG
T ss_pred ccCCC
Confidence 87443
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.6e-26 Score=204.18 Aligned_cols=208 Identities=20% Similarity=0.258 Sum_probs=93.7
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccc-cccccccCCCCc---------------------------
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA-EITESHSLTAPN--------------------------- 54 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~--------------------------- 54 (315)
+.|+++++++|.+ +.+| ..+.++++|++|++++|.+.+ +|..+++ ...
T Consensus 11 ~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~--l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGE--QREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCC--CHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCccccc--chhcchhhhhhhhccCCCEEEecCCccccC
Confidence 4555666666665 4555 345566666666666555543 4443332 110
Q ss_pred ----cccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCC
Q 039327 55 ----FQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRR 130 (315)
Q Consensus 55 ----~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 130 (315)
.+|++|++ +++.+.+ +|.. .++|++|++++|.+++ ++. ..++|++|++++|.+.+ +| .+..+++
T Consensus 87 p~~~~~L~~L~l-~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 87 PELPPHLESLVA-SCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp CSCCTTCSEEEC-CSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CCCcCCCCEEEc-cCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 14555555 4444443 3321 2445555555555442 221 11466666666666654 44 4666666
Q ss_pred ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210 (315)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 210 (315)
|++|++++|.++ .+|.. ..+|++|++++|.+++ +| .++.+++|++|++++|.+. .+|.. .++|+.|++
T Consensus 155 L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l 222 (454)
T 1jl5_A 155 LKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVA 222 (454)
T ss_dssp CCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEEC
T ss_pred CCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEEC
Confidence 666666666665 34432 3466666666666653 44 3566666666666666555 23321 234555555
Q ss_pred cCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 211 SNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 211 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
++|.+.. .| .+..+++|++|++++|.++
T Consensus 223 ~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 223 GNNILEE-LP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCcCCc-cc-ccCCCCCCCEEECCCCcCC
Confidence 5555542 22 2444555555555555444
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=3.6e-29 Score=222.31 Aligned_cols=291 Identities=19% Similarity=0.163 Sum_probs=145.7
Q ss_pred CCccceEEeecCcccccCCCcccCCCc----ccceeecccccccc-----cccccccCCCCccccEEEEeccCCCCcccc
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHS----RLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVTF 72 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 72 (315)
+++|++|++++|.+.+..+......++ +|++|++++|.++. ++..+.+ .+ +|++|++ ++|.+.+..
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--~~--~L~~L~L-s~n~i~~~~ 129 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT--LP--TLQELHL-SDNLLGDAG 129 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS--CT--TCCEEEC-CSSBCHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc--CC--ceeEEEC-CCCcCchHH
Confidence 456666777666665322211112233 46666666666653 3444333 33 6666666 556555433
Q ss_pred cccccc-----CCCCCeEEecCceecccC----ChhhhhcccccceeEeecCCCcCcCcCCCc-----CCCCccEEEccc
Q 039327 73 PKFLYH-----QHDLEDVHLSHIKMNGKF----PNWLLENNAKLETLFLINDSIGGPFRLPIH-----PHRRLRFLDVSN 138 (315)
Q Consensus 73 ~~~l~~-----~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~ 138 (315)
+..+.. .++|++|++++|.+++.. +.. +..+++|++|++++|.+.+..+..+. ..++|++|++++
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 332221 345666666666655432 222 24456666666666655432222221 234566666666
Q ss_pred CcCCCC----CchhhhhcCCCceEEEeecCcCCCCC-----CccccCCCCCcEEEccCccccCc----CchhhccCCCcc
Q 039327 139 NNFQGH----IPVEIGDILPSLFSFNISTNALHGSI-----PSSFGNMNFLRILDLSSNQLTGE----IPERLAVGCVNL 205 (315)
Q Consensus 139 ~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L 205 (315)
|.+++. ++..+.. +++|++|++++|.++... +..+..+++|++|++++|.+.+. ++..+. .+++|
T Consensus 209 n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L 286 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESL 286 (461)
T ss_dssp SCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTC
T ss_pred CCCcHHHHHHHHHHHHh-CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCc
Confidence 655521 2222322 556666666665544211 11122355566666666555421 222222 25555
Q ss_pred cEEEccCCCCCCccccccc-----CCCCCCEEEcCCCccccc----cccccccCCCCcEEEccCCcccc-----------
Q 039327 206 EFLALSNNNLKGHMFCRNF-----NLANLRQLQLEDNRFIGE----IPQSLSKCSSLEGLYLNNNSLSD----------- 265 (315)
Q Consensus 206 ~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~----------- 265 (315)
+.|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc
Confidence 5666655555432221111 124555555555555433 23334445555555555553322
Q ss_pred --------ccCCCCcccc----CCchhhcccCCCCEEecccCccCCC
Q 039327 266 --------ITMPKNHLEG----PIPVEFCQLYSLHILDISDNNISGS 300 (315)
Q Consensus 266 --------l~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~~~~~ 300 (315)
+++++|.+++ .++.++..+++|+.|++++|++++.
T Consensus 367 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3344444443 5677788888899999999888754
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.6e-28 Score=205.71 Aligned_cols=246 Identities=21% Similarity=0.142 Sum_probs=197.4
Q ss_pred CccceEEeecCcccccCCCcccCCCcccceeecccccccc--cccccc-------cCCCCccccEEEEeccCCCCccccc
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKA--EITESH-------SLTAPNFQLQSLLLSSGYGDGVTFP 73 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~ 73 (315)
++|+.+++++|.+ .+|. .+... |++|++++|.+.. +|..+. + ++ +|++|++ ++|.+.+..|
T Consensus 43 ~~L~~l~l~~n~l--~~p~-~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~--l~--~L~~L~L-~~n~l~~~~~ 112 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLG-QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLG--IS--GLQELTL-ENLEVTGTAP 112 (312)
T ss_dssp EECTTHHHHCCTT--CCCH-HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHT--TS--CCCEEEE-EEEBCBSCCC
T ss_pred CCceeEeeccccc--ccHH-HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcC--cC--CccEEEc-cCCcccchhH
Confidence 4688888899888 5563 34433 9999999999865 454432 2 44 8999999 9999998888
Q ss_pred ccc--ccCCCCCeEEecCceecccCChhhhhcc-----cccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCC--
Q 039327 74 KFL--YHQHDLEDVHLSHIKMNGKFPNWLLENN-----AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH-- 144 (315)
Q Consensus 74 ~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-- 144 (315)
..+ ..+++|++|++++|.+++. |..+ +.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 876 8899999999999999876 7654 566 8999999999999988778999999999999999987643
Q ss_pred Cchhh-hhcCCCceEEEeecCcCCC--CCC-ccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccc
Q 039327 145 IPVEI-GDILPSLFSFNISTNALHG--SIP-SSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMF 220 (315)
Q Consensus 145 ~~~~~-~~~~~~L~~L~l~~n~~~~--~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 220 (315)
++..+ +..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+.+..|...+..+++|+.|++++|.++. .|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hh
Confidence 23333 2448899999999999882 112 3346789999999999999866654555568899999999999985 45
Q ss_pred ccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327 221 CRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 221 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5444 8999999999999865 55 8899999999999998764
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.4e-28 Score=204.25 Aligned_cols=254 Identities=21% Similarity=0.177 Sum_probs=154.8
Q ss_pred cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327 30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET 109 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 109 (315)
++..+++.+.+...+..+.. ..+ +|++|++ ++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~-~~~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~ 84 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQ-SAW--NVKELDL-SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRT 84 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHT-TGG--GCSEEEC-TTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCE
T ss_pred eeEeeccccchhhhHHHHhc-cCC--CCCEEEC-cCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCE
Confidence 33444555555443333322 122 6777777 6677766656667777777777777777664433 366777777
Q ss_pred eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327 110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ 189 (315)
Q Consensus 110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 189 (315)
|++++|.+.+.. ..++|++|++++|.++ .++.. .+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 85 L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 85 LDLNNNYVQELL-----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EECCSSEEEEEE-----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred EECcCCcccccc-----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 777777665422 2367777777777665 33322 24567777777777775555566667777777777777
Q ss_pred ccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCC
Q 039327 190 LTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMP 269 (315)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~ 269 (315)
+.+..+..+...+++|+.|++++|.+++... ...+++|++|++++|.+++ ++..+..+++|++|++++|.+.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~----- 227 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV----- 227 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-----
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-----
Confidence 7643344443346677777777777665422 2246677777777777763 3444666777777777777666
Q ss_pred CCccccCCchhhcccCCCCEEecccCccC-CCCCCCcc-cccccee
Q 039327 270 KNHLEGPIPVEFCQLYSLHILDISDNNIS-GSLPSCFH-PLYIKKV 313 (315)
Q Consensus 270 ~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~~~-~~~L~~l 313 (315)
.+|..+..+++|+.|++++|.+. +.+|..+. ++.|+.+
T Consensus 228 ------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 228 ------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ------EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred ------chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 24555666677777777777776 44444444 5555444
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.5e-27 Score=210.27 Aligned_cols=237 Identities=17% Similarity=0.126 Sum_probs=155.7
Q ss_pred CCcccceeecccccccccc-cccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcc
Q 039327 26 NHSRLKRLWAYNNEIKAEI-TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENN 104 (315)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 104 (315)
.+++|++|++++|.++.++ ..+.. ++ +|++|++ ++|.+.+..| +..+++|++|++++|.+++. + ..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~--l~--~L~~L~L-s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-----~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAP--FT--KLELLNL-SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L-----VG 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTT--CT--TCCEEEC-TTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E-----EC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhC--CC--CCCEEEe-eCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C-----CC
Confidence 3447777777777777743 34443 44 7777777 7777765444 67777777777777777632 2 23
Q ss_pred cccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCcccc-CCCCCcEE
Q 039327 105 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFG-NMNFLRIL 183 (315)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L 183 (315)
++|++|++++|.+.+..+. .+++|++|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+.|
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 6777777777777654443 3466777777777776433444443 67777777777777765565554 57777777
Q ss_pred EccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcc
Q 039327 184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL 263 (315)
Q Consensus 184 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 263 (315)
++++|.+. .++... .+++|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 175 ~Ls~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 175 NLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred ecCCCccc-cccccc--cCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 77777776 333332 367777777777777764443 666777777777777777 3566666777777777777765
Q ss_pred ccccCCCCccccCCchhhcccCCCCEEecc
Q 039327 264 SDITMPKNHLEGPIPVEFCQLYSLHILDIS 293 (315)
Q Consensus 264 ~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~ 293 (315)
.. +.+|.++..++.++.+++.
T Consensus 250 ~c---------~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HC---------GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CH---------HHHHHHHTTCHHHHHHHHH
T ss_pred cC---------cchHHHHHhCCCCcEEecc
Confidence 41 1345566666666666665
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.4e-25 Score=199.80 Aligned_cols=254 Identities=21% Similarity=0.271 Sum_probs=167.4
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLE 83 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 83 (315)
.++.|++++|.++ .+|. .+. ++|++|++++|.++.+|.. .+ +|++|++ ++|.++ .+|. .+++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~lp~~-----l~--~L~~L~L-s~N~l~-~lp~---~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSLPAL-----PP--ELRTLEV-SGNQLT-SLPV---LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCCCCC-----CT--TCCEEEE-CSCCCS-CCCC---CCTTCC
T ss_pred CCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCCCCc-----CC--CCCEEEc-CCCcCC-cCCC---CCCCCC
Confidence 4778888888887 6663 333 6888888888888877662 34 7888888 777776 3554 667888
Q ss_pred eEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec
Q 039327 84 DVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST 163 (315)
Q Consensus 84 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (315)
+|++++|.+++ +|. .+++|++|++++|.+.. +|.. +++|++|++++|.++ .+|. .+++|+.|++.+
T Consensus 105 ~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~ 170 (622)
T 3g06_A 105 ELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYN 170 (622)
T ss_dssp EEEECSCCCCC-CCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCS
T ss_pred EEECcCCcCCC-CCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCC
Confidence 88888888763 443 45778888888887764 4432 367788888887776 4543 245677777777
Q ss_pred CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327 164 NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243 (315)
Q Consensus 164 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (315)
|.++ .+| ..+++|+.|++++|.+. .+|. ..++|+.|++++|.+..... .+++|+.|++++|.+++ +
T Consensus 171 N~l~-~l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 171 NQLT-SLP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp SCCS-CCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-C
T ss_pred CCCC-CCc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-C
Confidence 7776 344 34566777777777766 4443 24566666666666654321 23566666666666653 3
Q ss_pred ccccccCCCCcEEEccCCcccc----------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCc
Q 039327 244 PQSLSKCSSLEGLYLNNNSLSD----------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCF 305 (315)
Q Consensus 244 ~~~~~~~~~L~~L~l~~n~i~~----------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 305 (315)
| ..+++|+.|++++|.+.. +++++|.+. .+|..+.++++|+.|++++|.+++..|..+
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 3 334566666666665443 344455555 567778888888888888888876665543
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.7e-24 Score=194.14 Aligned_cols=241 Identities=22% Similarity=0.246 Sum_probs=199.5
Q ss_pred cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
..+++|+++++.++.+|..+.. +|++|++ ++|.++ .+|. .+++|++|++++|.++ .+|. .+++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~------~L~~L~L-~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L 103 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPA------HITTLVI-PDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGL 103 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCT------TCSEEEE-CSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTC
T ss_pred CCCcEEEecCCCcCccChhhCC------CCcEEEe-cCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCC
Confidence 4699999999999998887543 9999999 888888 4555 6789999999999987 5664 57999
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
++|++++|.+.+ +|. .+++|++|++++|.++ .+|.. +++|++|++++|.++ .+|. ..++|+.|++++
T Consensus 104 ~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 104 LELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYN 170 (622)
T ss_dssp CEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCC
Confidence 999999999885 444 5789999999999998 67753 579999999999998 4554 347899999999
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc--
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD-- 265 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~-- 265 (315)
|.+. .+| ..+++|+.|++++|.+.+... .+++|+.|++++|.++ .++. .+++|+.|++++|.++.
T Consensus 171 N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 171 NQLT-SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp SCCS-CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC
T ss_pred CCCC-CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC
Confidence 9998 676 247899999999999987432 3578999999999998 4443 35789999999997765
Q ss_pred --------ccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-ccccceecC
Q 039327 266 --------ITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 266 --------l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
+++++|.+. .+|. .+++|+.|++++|.++ .+|..+. +++|+.|++
T Consensus 238 ~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 678888887 4665 5688999999999999 7888888 999999875
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.9e-24 Score=177.23 Aligned_cols=203 Identities=21% Similarity=0.205 Sum_probs=154.3
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
..++++++++.++.+|..+.. ++++|++ +++.+....+..+.++++|++|++++|.++ .++..++..+++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~------~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPA------DTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCT------TCSEEEC-CSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCC
T ss_pred CCCEEEccCCCCCccCCCCCC------CCCEEEC-cCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCC
Confidence 578899998888888876443 7899999 888888666667888888999999888887 55555557788888
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 188 (315)
+|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 8888888887666667788888888888888887 555554444778888888888877555555777888888888888
Q ss_pred cccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 189 QLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 168 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 168 QLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 777 5555545567778888888887777666667777778888887777653
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.7e-24 Score=175.50 Aligned_cols=202 Identities=22% Similarity=0.239 Sum_probs=143.3
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
..+++++ +++.++ .+|..+. ++++.|++++|.++...+.. +..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~~~l~~-~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDC-SSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKA-FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEEC-TTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTS-SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEc-cCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHH-hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4667777 666666 3554333 56788888888776433333 47778888888888877755555567778888888
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.+. .++...+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcC
Confidence 8888776 566555545777888888888777665666777788888888888777 55655555677788888888877
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 7766666777778888888888777555556677777888888777654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.3e-24 Score=180.07 Aligned_cols=221 Identities=19% Similarity=0.102 Sum_probs=127.0
Q ss_pred eecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEe
Q 039327 33 LWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFL 112 (315)
Q Consensus 33 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 112 (315)
++..+..++.+|..+.. ++++|++ +++.+.+..+..+.++++|++|++++|.++...+.. +..+++|++|++
T Consensus 12 ~~c~~~~l~~ip~~l~~------~l~~L~l-s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L 83 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPF------STKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLIL 83 (276)
T ss_dssp EECTTSCCSSCCSSSCT------TCCEEEC-TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEEC
T ss_pred EEecCCCccccCCCCCC------CccEEEC-CCCcccccCHhHhccccCCcEEECCCCcCCccCHHH-ccCCcCCCEEEC
Confidence 34444445555555332 5666666 666666555556666666666666666665433333 356666666666
Q ss_pred ecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCC-CCccccCCCCCcEEEccCcccc
Q 039327 113 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMNFLRILDLSSNQLT 191 (315)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 191 (315)
++|.+.+..+..+..+++|++|++++|.+. .++......+++|++|++++|.++.. +|..+..+++|++|++++|.+.
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 666666555556666666666666666665 33332222366666666666666542 3566666666666666666665
Q ss_pred CcCchhhccCCCccc----EEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 192 GEIPERLAVGCVNLE----FLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 192 ~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
.++...+..++.++ .+++++|.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 163 -~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred -cCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 33222222233333 666666666654443333 235666666666666444444566666666666666544
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-25 Score=199.28 Aligned_cols=229 Identities=21% Similarity=0.180 Sum_probs=146.3
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+|++|++ ++|.+.+..|..+..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|+
T Consensus 35 ~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDL-SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GCCEEEC-CSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CccEEEe-eCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 6777777 6677776666667777777777777777765444 366777777777777665422 226677777
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.+. .++.. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+.+..|..+...+++|+.|++++|.+
T Consensus 106 L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777766 33332 2456777777777777655666677777777777777776545555443466777777777777
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (315)
++..+ ...+++|+.|++++|.+++. |..+..+++|+.|++++|.+. .+|.++..+++|+.|++++|
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-----------~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-----------LIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-----------EECTTCCCCTTCCEEECTTC
T ss_pred ccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-----------ccchhhccCCCCCEEEcCCC
Confidence 65422 22467777777777777643 334666777777777777665 24555666677777777777
Q ss_pred ccC-CCCCCCcc-ccccc
Q 039327 296 NIS-GSLPSCFH-PLYIK 311 (315)
Q Consensus 296 ~~~-~~~~~~~~-~~~L~ 311 (315)
.+. +.+|..+. ++.|+
T Consensus 248 ~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CBCHHHHHHHHTTCHHHH
T ss_pred CCcCcchHHHHHhCCCCc
Confidence 765 33333333 44443
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.7e-24 Score=175.65 Aligned_cols=207 Identities=21% Similarity=0.125 Sum_probs=170.5
Q ss_pred CcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhh
Q 039327 21 LEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWL 100 (315)
Q Consensus 21 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 100 (315)
...+.+++++++++++++.++.+|..+.. .++.|++ ++|.+.+..+..+..+++|+.|++++|.+++. +..
T Consensus 3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~------~l~~L~L-~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~- 73 (290)
T 1p9a_G 3 ICEVSKVASHLEVNCDKRNLTALPPDLPK------DTTILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD- 73 (290)
T ss_dssp SSEEECSTTCCEEECTTSCCSSCCSCCCT------TCCEEEC-TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-
T ss_pred cccccccCCccEEECCCCCCCcCCCCCCC------CCCEEEc-CCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-
Confidence 34577888999999999999998887543 8999999 88999887788899999999999999998743 332
Q ss_pred hhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCC
Q 039327 101 LENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFL 180 (315)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 180 (315)
+.+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|
T Consensus 74 -~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp -SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred -CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 67899999999999987 56777888999999999999988 6665544558899999999999886666667888999
Q ss_pred cEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 181 RILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 181 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
+.|++++|.+. .+|...+..+++|+.|++++|.+... |..+...+.|+.+++.+|.+..
T Consensus 151 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 99999999988 77777776788999999999988854 5555667789999999888754
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=9.7e-24 Score=174.71 Aligned_cols=222 Identities=21% Similarity=0.151 Sum_probs=182.1
Q ss_pred EEeecCcccccCCCcccCCCcccceeeccccccccccc-ccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEE
Q 039327 8 LYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEIT-ESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVH 86 (315)
Q Consensus 8 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 86 (315)
++..+..+. .+|. .+. +.|++|++++|.+++++. .+.+ ++ +|++|++ ++|.+.+..+..+.++++|++|+
T Consensus 12 ~~c~~~~l~-~ip~-~l~--~~l~~L~ls~n~l~~~~~~~~~~--l~--~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~ 82 (276)
T 2z62_A 12 YQCMELNFY-KIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFS--FP--ELQVLDL-SRCEIQTIEDGAYQSLSHLSTLI 82 (276)
T ss_dssp EECTTSCCS-SCCS-SSC--TTCCEEECTTCCCCEECTTTTTT--CT--TCSEEEC-TTCCCCEECTTTTTTCTTCCEEE
T ss_pred EEecCCCcc-ccCC-CCC--CCccEEECCCCcccccCHhHhcc--cc--CCcEEEC-CCCcCCccCHHHccCCcCCCEEE
Confidence 444444444 4552 232 479999999999998665 4443 55 8999999 88999877777899999999999
Q ss_pred ecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCC-CCchhhhhcCCCceEEEeecCc
Q 039327 87 LSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG-HIPVEIGDILPSLFSFNISTNA 165 (315)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~ 165 (315)
+++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+.. +++|++|++++|.
T Consensus 83 L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 83 LTGNPIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNK 160 (276)
T ss_dssp CTTCCCCEECTTT-TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSC
T ss_pred CCCCccCccChhh-hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-CCCCCEEECCCCC
Confidence 9999998665555 4899999999999999987777689999999999999999974 25777766 8999999999999
Q ss_pred CCCCCCccccCCCCCc----EEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 166 LHGSIPSSFGNMNFLR----ILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 166 ~~~~~~~~l~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
+++..+..+..+++++ .+++++|.+. .++...+. ..+|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9866666777777776 8999999998 66666653 5589999999999998877788899999999999999875
Q ss_pred c
Q 039327 242 E 242 (315)
Q Consensus 242 ~ 242 (315)
.
T Consensus 239 ~ 239 (276)
T 2z62_A 239 S 239 (276)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3e-24 Score=177.29 Aligned_cols=176 Identities=22% Similarity=0.213 Sum_probs=77.5
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+++.|++ +++.+.. ...+..+++|++|++++|.+++ ++ . +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 42 ~L~~L~l-~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 42 SIDQIIA-NNSDIKS--VQGIQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TCCEEEC-TTSCCCC--CTTGGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ceeeeee-CCCCccc--ccccccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4555555 4444432 1224445555555555554442 11 2 24445555555555554443333444445555555
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcC
Confidence 5555444 333332222444455555444444333333444444444444444444 23332222344444444444444
Q ss_pred CCcccccccCCCCCCEEEcCCCcc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRF 239 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~ 239 (315)
.+..+..+..+++|+.|++++|.+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCHHHHhCCcCCCEEEccCCCc
Confidence 444333344444444444444443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.8e-24 Score=175.62 Aligned_cols=198 Identities=25% Similarity=0.202 Sum_probs=166.9
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+++++++ +++.++ .+|..+. ++++.|++++|.+++..+.. +..+++|++|++++|.+.+..+ ...+++|++|+
T Consensus 11 ~l~~l~~-~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNC-DKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEEC-TTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE
T ss_pred CccEEEC-CCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE
Confidence 7999999 888887 4555443 68999999999998665555 4889999999999999886333 37889999999
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.+. .+|..+.. +++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 84 Ls~N~l~-~l~~~~~~-l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp CCSSCCS-SCCCCTTT-CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCC-cCchhhcc-CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcC
Confidence 9999998 78876655 889999999999999666678899999999999999998 67777666789999999999999
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
.+..+..+..+++|+.|++++|.++ .+|..+...++|+.+++.+|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9887778888999999999999998 67777788889999999998764
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=2.2e-23 Score=168.91 Aligned_cols=206 Identities=15% Similarity=0.109 Sum_probs=133.8
Q ss_pred cccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCce-ecccCChhhhhcccccceeEeec-CC
Q 039327 39 EIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK-MNGKFPNWLLENNAKLETLFLIN-DS 116 (315)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~ 116 (315)
.++.+|. +.. ++++|++ +++.+++..+..+..+++|++|++++|. ++ .++...+..+++|++|++++ |.
T Consensus 22 ~l~~ip~-~~~------~l~~L~l-~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 22 DIQRIPS-LPP------STQTLKL-IETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp SCSSCCC-CCT------TCCEEEE-ESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETT
T ss_pred CccccCC-CCC------cccEEEE-eCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCC
Confidence 3555665 433 6778888 7777776555567777778888887776 55 33332346777788888877 77
Q ss_pred CcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce---EEEeecC-cCCCCCCccccCCCCCc-EEEccCcccc
Q 039327 117 IGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF---SFNISTN-ALHGSIPSSFGNMNFLR-ILDLSSNQLT 191 (315)
Q Consensus 117 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~~~ 191 (315)
+....+..|..+++|++|++++|.++ .+|. +.. +++|+ +|++++| .++...+..|..+++|+ ++++++|.+.
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-ccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 77655566777777777777777776 4655 332 55666 7777777 66644445567777777 7777777776
Q ss_pred CcCchhhccCCCcccEEEccCCC-CCCcccccccCC-CCCCEEEcCCCccccccccccccCCCCcEEEccCC
Q 039327 192 GEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNL-ANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261 (315)
Q Consensus 192 ~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 261 (315)
.+|...+.. ++|+.|++++|. +.+..+..+..+ ++|+.|++++|.+++ +|.. .+++|+.|++.++
T Consensus 170 -~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred -ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 666665543 667777777773 665555566666 667777777666653 3322 4555666665543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.3e-23 Score=173.43 Aligned_cols=227 Identities=19% Similarity=0.216 Sum_probs=179.3
Q ss_pred cceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCe
Q 039327 5 IEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLED 84 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 84 (315)
+..+++.++.+... .....+++|++|+++++.+..++. +.. ++ +|++|++ ++|.+.+ ...+..+++|++
T Consensus 21 l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~~~-l~~--l~--~L~~L~l-~~n~l~~--~~~l~~l~~L~~ 89 (272)
T 3rfs_A 21 TIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQG-IQY--LP--NVRYLAL-GGNKLHD--ISALKELTNLTY 89 (272)
T ss_dssp HHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCCCTT-GGG--CT--TCCEEEC-TTSCCCC--CGGGTTCTTCCE
T ss_pred HHHHHhcCcccccc---cccccccceeeeeeCCCCcccccc-ccc--CC--CCcEEEC-CCCCCCC--chhhcCCCCCCE
Confidence 33445555555422 245678889999999998877543 333 55 8999999 8888875 246888999999
Q ss_pred EEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecC
Q 039327 85 VHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTN 164 (315)
Q Consensus 85 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 164 (315)
|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|
T Consensus 90 L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 90 LILTGNQLQSLPNGV-FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp EECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccChhH-hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCC
Confidence 999999998544444 588999999999999998777777899999999999999998 666665545889999999999
Q ss_pred cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccc
Q 039327 165 ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIP 244 (315)
Q Consensus 165 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 244 (315)
.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+ .++.++.+++..|.+++.+|
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 998666667889999999999999998 5555555578999999999997764 35678899999999999988
Q ss_pred cccccCCC
Q 039327 245 QSLSKCSS 252 (315)
Q Consensus 245 ~~~~~~~~ 252 (315)
.+++.++.
T Consensus 240 ~~~~~~~~ 247 (272)
T 3rfs_A 240 NSAGSVAP 247 (272)
T ss_dssp CTTSCBCG
T ss_pred CcccccCC
Confidence 88776643
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.5e-25 Score=193.09 Aligned_cols=234 Identities=21% Similarity=0.222 Sum_probs=102.7
Q ss_pred ccCCCcccceeecccccccc-----cccccccCCCCccccEEEEeccCC---CCcccccccc-------ccCCCCCeEEe
Q 039327 23 PLFNHSRLKRLWAYNNEIKA-----EITESHSLTAPNFQLQSLLLSSGY---GDGVTFPKFL-------YHQHDLEDVHL 87 (315)
Q Consensus 23 ~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~l-------~~~~~L~~L~l 87 (315)
.+..+++|++|++++|.+.. ++..+.. .+ +|++|++ +++ .+.+.+|..+ ..+++|++|++
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--~~--~L~~L~L-s~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIAS--KK--DLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTT--CT--TCCEEEC-CSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHh--CC--CccEEeC-cccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 44555666666666666554 1112222 22 5666666 443 2222333322 45556666666
Q ss_pred cCceecc----cCChhhhhcccccceeEeecCCCcCcCcCC----CcCC---------CCccEEEcccCcCCC-CCc---
Q 039327 88 SHIKMNG----KFPNWLLENNAKLETLFLINDSIGGPFRLP----IHPH---------RRLRFLDVSNNNFQG-HIP--- 146 (315)
Q Consensus 88 ~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~~~~~~-~~~--- 146 (315)
++|.+++ .++..+ ..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.++. .++
T Consensus 102 s~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 6665554 233332 45555666666655554322211 2222 455555555555441 122
Q ss_pred hhhhhcCCCceEEEeecCcCCC-----CCCccccCCCCCcEEEccCcccc----CcCchhhccCCCcccEEEccCCCCCC
Q 039327 147 VEIGDILPSLFSFNISTNALHG-----SIPSSFGNMNFLRILDLSSNQLT----GEIPERLAVGCVNLEFLALSNNNLKG 217 (315)
Q Consensus 147 ~~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~~~~ 217 (315)
..+. .+++|++|++++|.++. ..+..+..+++|+.|++++|.+. ..++..+. .+++|+.|++++|.+.+
T Consensus 181 ~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 181 KTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCH
T ss_pred HHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCch
Confidence 1112 24455555555554441 12223444555555555555442 12333222 24445555555554443
Q ss_pred c----cccccc--CCCCCCEEEcCCCcccc----cccccc-ccCCCCcEEEccCCccc
Q 039327 218 H----MFCRNF--NLANLRQLQLEDNRFIG----EIPQSL-SKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 218 ~----~~~~~~--~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~i~ 264 (315)
. ++..+. .+++|+.|++++|.+++ .++..+ ..+++|++|++++|.+.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 2 122221 14444444444444443 133333 23444444444444433
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=176.01 Aligned_cols=226 Identities=20% Similarity=0.218 Sum_probs=161.3
Q ss_pred ccEEEEeccCCCCcccccc---ccccCCCCCeEEecCceecccCChhhh-hcccccceeEeecCCCcCcCc----CCCcC
Q 039327 56 QLQSLLLSSGYGDGVTFPK---FLYHQHDLEDVHLSHIKMNGKFPNWLL-ENNAKLETLFLINDSIGGPFR----LPIHP 127 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~l~~ 127 (315)
.++.+.+ ....+...... ....+++|++|++++|.+.+..|..++ ..+++|++|++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTV-GAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEE-CSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEE-eCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 6778888 66666532111 122346688888888888877776643 678888888888888876433 23456
Q ss_pred CCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCC--C--CccccCCCCCcEEEccCccccCcCch---hhcc
Q 039327 128 HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGS--I--PSSFGNMNFLRILDLSSNQLTGEIPE---RLAV 200 (315)
Q Consensus 128 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~ 200 (315)
+++|++|++++|.+. .++...+..+++|++|++++|.+.+. . +..+..+++|++|++++|.+. .++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 888888888888887 44444443488888899888876531 1 223467888889999988886 4433 2334
Q ss_pred CCCcccEEEccCCCCCCcccccccCC---CCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCC
Q 039327 201 GCVNLEFLALSNNNLKGHMFCRNFNL---ANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPI 277 (315)
Q Consensus 201 ~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~ 277 (315)
.+++|+.|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++.. +
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-----------~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-----------A 287 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-----------C
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-----------C
Confidence 57888999999998888766655554 68999999999888 5666553 688888888888773 2
Q ss_pred chhhcccCCCCEEecccCccCC
Q 039327 278 PVEFCQLYSLHILDISDNNISG 299 (315)
Q Consensus 278 ~~~l~~~~~L~~L~l~~n~~~~ 299 (315)
|. +..+++|+.|++++|++++
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTSC
T ss_pred ch-hhhCCCccEEECcCCCCCC
Confidence 32 5677889999999998874
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.6e-24 Score=184.57 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=179.4
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceeccc-CChhhhhccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGK-FPNWLLENNAKL 107 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L 107 (315)
.++.++++++.+.. ..+..+..+ +++.|++ +++.+.+..+. +..+++|++|++++|.+++. ++.. +..+++|
T Consensus 48 ~~~~l~l~~~~~~~--~~~~~~~~~--~l~~L~l-~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLHP--DVTGRLLSQ--GVIAFRC-PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCCH--HHHHHHHHT--TCSEEEC-TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHH-HTTBCCC
T ss_pred hheeeccccccCCH--HHHHhhhhc--cceEEEc-CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHH-HhhCCCC
Confidence 47778888776653 222220013 7888888 77777765544 55788888899888888755 4544 4788889
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccC-cCCCC-CchhhhhcCCCceEEEeecC-cCCCC-CCccccCCC-CCcE
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNN-NFQGH-IPVEIGDILPSLFSFNISTN-ALHGS-IPSSFGNMN-FLRI 182 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~ 182 (315)
++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+.. +++|++|++++| .++.. ++..+..++ +|++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 99999888887767777788888999999888 56532 3333443 888999999988 77632 456677888 8999
Q ss_pred EEccCcc--cc-CcCchhhccCCCcccEEEccCCC-CCCcccccccCCCCCCEEEcCCCc-cccccccccccCCCCcEEE
Q 039327 183 LDLSSNQ--LT-GEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNLANLRQLQLEDNR-FIGEIPQSLSKCSSLEGLY 257 (315)
Q Consensus 183 L~l~~n~--~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~ 257 (315)
|++++|. +. +.++..+. .+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|+
T Consensus 200 L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred EEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 9999884 43 23444333 58889999999988 666666677888999999999885 3333334577889999999
Q ss_pred ccCCccccccCCCCccccCCchhhccc-CCCCEEecccCccCCCCCCCcc
Q 039327 258 LNNNSLSDITMPKNHLEGPIPVEFCQL-YSLHILDISDNNISGSLPSCFH 306 (315)
Q Consensus 258 l~~n~i~~l~l~~~~l~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~ 306 (315)
+++| +.. ..+..+ .++..|++++|.+++..|..+.
T Consensus 279 l~~~-i~~-------------~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 279 VFGI-VPD-------------GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTS-SCT-------------TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ccCc-cCH-------------HHHHHHHhhCcceEEecccCccccCCccc
Confidence 9887 331 122222 2355667888999888887765
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=4.5e-25 Score=201.93 Aligned_cols=127 Identities=15% Similarity=0.077 Sum_probs=61.5
Q ss_pred CCCCCcEEEccCccccCcCchhhccCCCcccEEEcc----CCCCCCc-----ccccccCCCCCCEEEcCCCc--cccccc
Q 039327 176 NMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS----NNNLKGH-----MFCRNFNLANLRQLQLEDNR--FIGEIP 244 (315)
Q Consensus 176 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~ 244 (315)
.+++|++|++..+.+.+.....+...+++|+.|+++ .+.+++. .+..+..+++|+.|+++.|. +++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 355555555555555433333333335566666664 3334332 11223345566666664322 333322
Q ss_pred cccc-cCCCCcEEEccCCcccc---------------ccCCCCccccC-CchhhcccCCCCEEecccCccCCCCC
Q 039327 245 QSLS-KCSSLEGLYLNNNSLSD---------------ITMPKNHLEGP-IPVEFCQLYSLHILDISDNNISGSLP 302 (315)
Q Consensus 245 ~~~~-~~~~L~~L~l~~n~i~~---------------l~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~ 302 (315)
..+. .+++|++|++++|.+++ +++++|.+++. ++..+..+++|+.|++++|++++...
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 2222 35666666666654432 44445554432 23333456666666666666654433
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=169.50 Aligned_cols=222 Identities=18% Similarity=0.174 Sum_probs=172.5
Q ss_pred CCCCCeEEecCceecccCChhh--hhcccccceeEeecCCCcCcCcCCC--cCCCCccEEEcccCcCCCCCc----hhhh
Q 039327 79 QHDLEDVHLSHIKMNGKFPNWL--LENNAKLETLFLINDSIGGPFRLPI--HPHRRLRFLDVSNNNFQGHIP----VEIG 150 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~ 150 (315)
...++.+.+.++.++......+ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4457888998887754211111 1345779999999999998888887 899999999999999986544 2333
Q ss_pred hcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCc--Cch-hhccCCCcccEEEccCCCCCCcccc---ccc
Q 039327 151 DILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGE--IPE-RLAVGCVNLEFLALSNNNLKGHMFC---RNF 224 (315)
Q Consensus 151 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~--~~~-~~~~~~~~L~~L~l~~n~~~~~~~~---~~~ 224 (315)
.+++|++|++++|.+++..+..+..+++|++|++++|.+.+. ++. .....+++|++|++++|.++..... .+.
T Consensus 143 -~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 -LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp -BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred -hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 488999999999999977778899999999999999987632 222 2223588999999999999753221 346
Q ss_pred CCCCCCEEEcCCCccccccccccccC---CCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCC
Q 039327 225 NLANLRQLQLEDNRFIGEIPQSLSKC---SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSL 301 (315)
Q Consensus 225 ~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 301 (315)
.+++|++|++++|.+++..|..+..+ ++|++|++++|++.. +|..+. ++|+.|++++|++++ +
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-----------lp~~~~--~~L~~L~Ls~N~l~~-~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-----------VPKGLP--AKLRVLDLSSNRLNR-A 287 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-----------CCSCCC--SCCSCEECCSCCCCS-C
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-----------hhhhhc--CCCCEEECCCCcCCC-C
Confidence 78999999999999997777777766 699999999998873 455553 799999999999994 4
Q ss_pred CCCccccccceecC
Q 039327 302 PSCFHPLYIKKVHL 315 (315)
Q Consensus 302 ~~~~~~~~L~~l~l 315 (315)
|..-.+++|+.|++
T Consensus 288 ~~~~~l~~L~~L~L 301 (310)
T 4glp_A 288 PQPDELPEVDNLTL 301 (310)
T ss_dssp CCTTSCCCCSCEEC
T ss_pred chhhhCCCccEEEC
Confidence 54333889998875
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.3e-24 Score=198.88 Aligned_cols=110 Identities=17% Similarity=0.079 Sum_probs=51.8
Q ss_pred CCCCCcEEEccCcc--ccCcCchhhccCCCcccEEEccCCCCCCc-ccccccCCCCCCEEEcCCCccccc-cccccccCC
Q 039327 176 NMNFLRILDLSSNQ--LTGEIPERLAVGCVNLEFLALSNNNLKGH-MFCRNFNLANLRQLQLEDNRFIGE-IPQSLSKCS 251 (315)
Q Consensus 176 ~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~ 251 (315)
.+++|+.|+++.|. +.+.....+...+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++. ++..+..++
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 34445555544321 22222223333355555555555555431 222334555666666666655433 222334455
Q ss_pred CCcEEEccCCccccccCCCCccccCCchh-hcccCCCCEEecccC
Q 039327 252 SLEGLYLNNNSLSDITMPKNHLEGPIPVE-FCQLYSLHILDISDN 295 (315)
Q Consensus 252 ~L~~L~l~~n~i~~l~l~~~~l~~~~~~~-l~~~~~L~~L~l~~n 295 (315)
+|++|++++|+++ +..... ...+|.+....+..+
T Consensus 514 ~L~~L~ls~n~it----------~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 514 SLRYLWVQGYRAS----------MTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCEEEEESCBCC----------TTCTTGGGGCCTTEEEEEECCC
T ss_pred ccCeeECcCCcCC----------HHHHHHHHHhCCCcEEEEecCc
Confidence 6666666665544 232222 335676666655554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.2e-24 Score=187.11 Aligned_cols=262 Identities=23% Similarity=0.273 Sum_probs=191.3
Q ss_pred cceeecccccccccccccccCCCCccccEEEEeccCCCCccccc----cccccCCCCCeEEecCce---ecccCChhh--
Q 039327 30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFP----KFLYHQHDLEDVHLSHIK---MNGKFPNWL-- 100 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~---~~~~~~~~~-- 100 (315)
|+...+....+..++..+.. .+ +|++|++ ++|.+.+..+ ..+..+++|++|++++|. +++.+|..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~--~~--~L~~L~L-~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLE--DD--SVKEIVL-SGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHH--CS--CCCEEEC-TTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhc--CC--CccEEEC-CCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 33334444444445555544 44 8999999 8888887644 446789999999999864 455566554
Q ss_pred ----hhcccccceeEeecCCCcC----cCcCCCcCCCCccEEEcccCcCCCCCchhhhhc---C---------CCceEEE
Q 039327 101 ----LENNAKLETLFLINDSIGG----PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDI---L---------PSLFSFN 160 (315)
Q Consensus 101 ----~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~---------~~L~~L~ 160 (315)
+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..+... + ++|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 3678999999999999887 356678889999999999998863323333321 2 7999999
Q ss_pred eecCcCC-CCCC---ccccCCCCCcEEEccCccccCc----CchhhccCCCcccEEEccCCCCC----CcccccccCCCC
Q 039327 161 ISTNALH-GSIP---SSFGNMNFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNNLK----GHMFCRNFNLAN 228 (315)
Q Consensus 161 l~~n~~~-~~~~---~~l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~ 228 (315)
+++|.++ ...+ ..+..+++|++|++++|.+... +....+..+++|+.|++++|.++ ...+..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 9999987 3444 3567889999999999988722 22212336889999999999986 445667788999
Q ss_pred CCEEEcCCCccccc----cccccc--cCCCCcEEEccCCccccccCCCCccccCCchhh-cccCCCCEEecccCccCCCC
Q 039327 229 LRQLQLEDNRFIGE----IPQSLS--KCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF-CQLYSLHILDISDNNISGSL 301 (315)
Q Consensus 229 L~~L~l~~n~~~~~----~~~~~~--~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l-~~~~~L~~L~l~~n~~~~~~ 301 (315)
|+.|++++|.+++. ++..+. .+++|++|++++|.+....+ ..+|..+ .++++|+.|++++|.+++..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~------~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV------RTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH------HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH------HHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999998865 455553 38999999999998774100 0256666 56899999999999998666
Q ss_pred C
Q 039327 302 P 302 (315)
Q Consensus 302 ~ 302 (315)
+
T Consensus 320 ~ 320 (386)
T 2ca6_A 320 D 320 (386)
T ss_dssp H
T ss_pred h
Confidence 4
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4.2e-22 Score=161.33 Aligned_cols=197 Identities=17% Similarity=0.181 Sum_probs=119.1
Q ss_pred CCCCeEEecCceecccCChhhhhcccccceeEeecCC-CcCcCcCCCcCCCCccEEEccc-CcCCCCCchhhhhcCCCce
Q 039327 80 HDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS-IGGPFRLPIHPHRRLRFLDVSN-NNFQGHIPVEIGDILPSLF 157 (315)
Q Consensus 80 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~ 157 (315)
.++++|++++|.+++..+.. +..+++|++|++++|. +....+.+|..+++|++|++++ |.++ .++...+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTT-TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHH-ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence 36777777777776433323 4667777777777775 6554445666777777777776 6665 45544444466777
Q ss_pred EEEeecCcCCCCCCccccCCCCCc---EEEccCc-cccCcCchhhccCCCccc-EEEccCCCCCCcccccccCCCCCCEE
Q 039327 158 SFNISTNALHGSIPSSFGNMNFLR---ILDLSSN-QLTGEIPERLAVGCVNLE-FLALSNNNLKGHMFCRNFNLANLRQL 232 (315)
Q Consensus 158 ~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L 232 (315)
+|++.+|.+++ +|. +..+++|+ +|++++| .+. .++...+..+++|+ .|++++|.+....+..+.. ++|++|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence 77777776663 554 66666666 7777776 665 55554444566666 6777666666444334433 566666
Q ss_pred EcCCCc-cccccccccccC-CCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccC
Q 039327 233 QLEDNR-FIGEIPQSLSKC-SSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDN 295 (315)
Q Consensus 233 ~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 295 (315)
++++|. +++..+..+..+ ++|+.|++++|.+.. +|.. .+++|+.|++.++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-----------l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-----------LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-----------CCCT--TCTTCSEEECTTC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-----------CChh--HhccCceeeccCc
Confidence 666663 654444555666 666666666666553 2222 4455666666654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=9.4e-22 Score=165.19 Aligned_cols=190 Identities=17% Similarity=0.244 Sum_probs=140.8
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+|++|++ +++.+.. ++ .+..+++|+.|++++|.+++. +. +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 42 ~L~~L~l-~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 42 GITTLSA-FGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp TCCEEEC-TTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CcCEEEe-eCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 7888888 7777764 34 577788888888888888743 33 47888888888888887752 3577788888888
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.++ .++. +. .+++|++|++++|.+++ .+. +..+++|++|++++|.+. .++. +..+++|+.|++++|.+
T Consensus 114 l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCCCCC-Cchh-hc-CCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCcc
Confidence 8888887 4554 33 37888888888888874 333 777888888888888877 4444 34578888888888888
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
.+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+..
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 76543 667888888888888887543 36778888888888887764
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=4.3e-24 Score=183.62 Aligned_cols=254 Identities=17% Similarity=0.101 Sum_probs=185.4
Q ss_pred eEEeecCcccccCCCcccCCCcccceeecccccccccc-----cccccCCCCccccEEEEeccCCCCccccccccccC--
Q 039327 7 ELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEI-----TESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ-- 79 (315)
Q Consensus 7 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-- 79 (315)
.++++.|.+.+.+| ..+...++|++|++++|.+++.+ ..+.. .+. +|++|++ ++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~-~L~~L~L-s~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPA-SVTSLNL-SGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT--CCT-TCCEEEC-CSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHh--CCC-ceeEEEC-cCCCCCHHHHHHHHHHHh
Confidence 36788888887777 35555566999999999998844 33332 222 7999999 8899988767666664
Q ss_pred ---CCCCeEEecCceecccCChhh---hhcc-cccceeEeecCCCcCcCcCC----CcC-CCCccEEEcccCcCCCCCch
Q 039327 80 ---HDLEDVHLSHIKMNGKFPNWL---LENN-AKLETLFLINDSIGGPFRLP----IHP-HRRLRFLDVSNNNFQGHIPV 147 (315)
Q Consensus 80 ---~~L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~~ 147 (315)
++|++|++++|.+++..+..+ +..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.+++..+.
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 899999999999987666544 2334 89999999999987655433 333 36899999999998754433
Q ss_pred hh----hhcCCCceEEEeecCcCCCCCCcc----ccCC-CCCcEEEccCccccCc----CchhhccCCCcccEEEccCCC
Q 039327 148 EI----GDILPSLFSFNISTNALHGSIPSS----FGNM-NFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNN 214 (315)
Q Consensus 148 ~~----~~~~~~L~~L~l~~n~~~~~~~~~----l~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~ 214 (315)
.+ .....+|++|++++|.++...+.. +..+ ++|++|++++|.+.+. ++..+....++|+.|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 33 331238999999999988555543 3445 5899999999998842 444554335689999999999
Q ss_pred CCCccc----ccccCCCCCCEEEcCCCccccc-------cccccccCCCCcEEEccCCcccc
Q 039327 215 LKGHMF----CRNFNLANLRQLQLEDNRFIGE-------IPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 215 ~~~~~~----~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
+.+..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 887544 3456788999999999984432 33456677888899999888764
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.9e-24 Score=182.79 Aligned_cols=235 Identities=20% Similarity=0.159 Sum_probs=98.5
Q ss_pred cceEEeecCcccccCCC----cccCCCc-ccceeeccccccccc-ccccccCCCCc-cccEEEEeccCCCCccccccccc
Q 039327 5 IEELYLSNNHFQIPISL----EPLFNHS-RLKRLWAYNNEIKAE-ITESHSLTAPN-FQLQSLLLSSGYGDGVTFPKFLY 77 (315)
Q Consensus 5 L~~l~l~~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~ 77 (315)
|++|++++|.+. ..+. +.+..++ +|++|++++|.++.. +..+..+.... .+|++|++ ++|.+++..+..+.
T Consensus 24 L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L-s~n~l~~~~~~~l~ 101 (362)
T 3goz_A 24 VTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL-SGNFLSYKSSDELV 101 (362)
T ss_dssp CCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC-CSSCGGGSCHHHHH
T ss_pred ceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC-cCCcCChHHHHHHH
Confidence 555555555554 2221 2344444 555555555555441 22211100000 14555555 55555443333222
Q ss_pred ----cC-CCCCeEEecCceecccCChhh---hhc-ccccceeEeecCCCcCcCc----CCCcCCC-CccEEEcccCcCCC
Q 039327 78 ----HQ-HDLEDVHLSHIKMNGKFPNWL---LEN-NAKLETLFLINDSIGGPFR----LPIHPHR-RLRFLDVSNNNFQG 143 (315)
Q Consensus 78 ----~~-~~L~~L~l~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~ 143 (315)
.+ ++|++|++++|.+++..+..+ +.. .++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 22 455555555555544333222 111 2355555555555543221 1222332 55555555555543
Q ss_pred CCchhhhh---cC-CCceEEEeecCcCCCC----CCccccC-CCCCcEEEccCccccCcCch---hhccCCCcccEEEcc
Q 039327 144 HIPVEIGD---IL-PSLFSFNISTNALHGS----IPSSFGN-MNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFLALS 211 (315)
Q Consensus 144 ~~~~~~~~---~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~ 211 (315)
..+..+.. .+ ++|++|++++|.++.. ++..+.. .++|++|++++|.+.+..+. ..+..+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 33222211 12 3555555555555421 2222333 23555555555555422211 112234455555555
Q ss_pred CCCCCCc-------ccccccCCCCCCEEEcCCCcccc
Q 039327 212 NNNLKGH-------MFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 212 ~n~~~~~-------~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
+|.+.+. .+..+..+++|+.+++++|.+.+
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 5542221 11233344455555555555543
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=2.8e-22 Score=171.55 Aligned_cols=239 Identities=17% Similarity=0.089 Sum_probs=132.1
Q ss_pred ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce-
Q 039327 31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET- 109 (315)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~- 109 (315)
++++.+++.++.+|..+.. ++++|++ ++|.++..-+.++.++++|++|++++|.+.+.++...|..++++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~------~l~~L~L-s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPR------NAIELRF-VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCSCCTTCCT------TCSEEEE-ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred CEEEecCCCCCccCcCcCC------CCCEEEc-cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 4566666666666665432 6666666 6666664334456666667777776666655555544556666554
Q ss_pred eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec-CcCCCCCCccccCCC-CCcEEEccC
Q 039327 110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMN-FLRILDLSS 187 (315)
Q Consensus 110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~-~L~~L~l~~ 187 (315)
+.+.+|++....+.+|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 444456666555566666667777777666665 34433222244556666654 334422233344433 466666776
Q ss_pred ccccCcCchhhccCCCcccEEEccC-CCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc-ccc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSN-NNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS-LSD 265 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-i~~ 265 (315)
|.+. .++...+. ..+++.+++.+ |.++...+.++..+++|++|++++|.++...+.. +.+|+.|...++. ++
T Consensus 164 N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~- 237 (350)
T 4ay9_X 164 NGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLK- 237 (350)
T ss_dssp SCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCC-
T ss_pred cccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcC-
Confidence 6666 55555553 45566666653 4455554555666666777777776666322222 3344444443321 11
Q ss_pred ccCCCCccccCCchhhcccCCCCEEeccc
Q 039327 266 ITMPKNHLEGPIPVEFCQLYSLHILDISD 294 (315)
Q Consensus 266 l~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 294 (315)
.+| .+..+++|+.+++.+
T Consensus 238 ----------~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 ----------KLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ----------CCC-CTTTCCSCCEEECSC
T ss_pred ----------cCC-CchhCcChhhCcCCC
Confidence 334 355566666666654
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.4e-23 Score=178.76 Aligned_cols=247 Identities=18% Similarity=0.183 Sum_probs=186.1
Q ss_pred ccceEEeecCcccccCCCcccCCC--cccceeecccccccccccccccCCCCccccEEEEeccCCCCccc-cccccccCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNH--SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVT-FPKFLYHQH 80 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~ 80 (315)
.++.++++++.+.. ..+..+ ++++.|++++|.+.+.+..+.. .+ +|++|++ +++.+.+. ++..+..++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~--~~--~L~~L~L-~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAEHFS--PF--RVQHMDL-SNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCSCCC--CB--CCCEEEC-TTCEECHHHHHHHHTTBC
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchhhcc--CC--CCCEEEc-cCCCcCHHHHHHHHhhCC
Confidence 37789999887762 345556 8899999999999886655443 45 9999999 88888765 777888999
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecC-CCcC-cCcCCCcCCCCccEEEcccC-cCCCC-CchhhhhcCC-C
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLIND-SIGG-PFRLPIHPHRRLRFLDVSNN-NFQGH-IPVEIGDILP-S 155 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~-~ 155 (315)
+|++|++++|.+++..+..+ +.+++|++|++++| .+++ ..+..+..+++|++|++++| .+++. ++..+.. ++ +
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l~~~ 196 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSET 196 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH-SCTT
T ss_pred CCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh-cccC
Confidence 99999999999887777775 77999999999999 5664 25556788999999999999 77743 3444544 88 9
Q ss_pred ceEEEeecC--cCC-CCCCccccCCCCCcEEEccCcc-ccCcCchhhccCCCcccEEEccCCC-CCCcccccccCCCCCC
Q 039327 156 LFSFNISTN--ALH-GSIPSSFGNMNFLRILDLSSNQ-LTGEIPERLAVGCVNLEFLALSNNN-LKGHMFCRNFNLANLR 230 (315)
Q Consensus 156 L~~L~l~~n--~~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~ 230 (315)
|++|++++| .++ ..++..+..+++|++|++++|. +.+..+..+. .+++|+.|++++|. +.......+..+++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 999999999 444 3456677889999999999998 6655565554 58999999999995 3333334577899999
Q ss_pred EEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327 231 QLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 231 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
+|++++| +.......+. ..++.|++++|.++.
T Consensus 276 ~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTT 307 (336)
T ss_dssp EEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCC
T ss_pred EEeccCc-cCHHHHHHHH--hhCcceEEecccCcc
Confidence 9999998 5433222222 124444566666553
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-21 Score=158.83 Aligned_cols=178 Identities=19% Similarity=0.172 Sum_probs=97.3
Q ss_pred cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
+..++++++++.++.+|..+.. .++.|++ +++.+.+..+..+.++++|++|++++|.+++..+.. +..+++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~------~l~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPA------DTEKLDL-QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCT------TCCEEEC-TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTC
T ss_pred CCCeEEecCCCCccccCCCCCC------CCCEEEc-cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-hccCCcC
Confidence 3456677777777776665432 6777777 666666655556666666666666666666443333 3556666
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 66666666665544445555556666666555555 44443333355555555555555533333444455555555555
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCC
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
|.+. .++...+..+++|+.|++++|.+
T Consensus 165 N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 165 NQLQ-SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcCC-ccCHHHHhCCCCCCEEEeeCCce
Confidence 5444 33332222344444444444444
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.3e-21 Score=157.19 Aligned_cols=179 Identities=22% Similarity=0.199 Sum_probs=105.9
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
..+++++ +++.+. .+|..+. +.++.|++++|.+++..+.. +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 15 ~~~~l~~-~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDC-QGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEEC-TTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCeEEec-CCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 4556666 555555 3444333 46666666666666444443 35666666666666666655555566666666666
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 90 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcC
Confidence 6666665 444444434666666666666666444444566666666666666665 44443333466666666666666
Q ss_pred CCcccccccCCCCCCEEEcCCCcccc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
.+..+..+..+++|+.|++++|.+.+
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeC
Confidence 65555555566666666666666553
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.3e-21 Score=161.81 Aligned_cols=195 Identities=18% Similarity=0.191 Sum_probs=150.5
Q ss_pred cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327 24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN 103 (315)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (315)
...+++|++|+++++.+..++ .+.. ++ +|++|++ ++|.+.+..+ +..+++|++|++++|.+++ ++ . +..
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~--l~--~L~~L~L-~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~-~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQY--LN--NLIGLEL-KDNQITDLAP--LKNLTKITELELSGNPLKN-VS-A-IAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGG--CT--TCCEEEC-CSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-G-GTT
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhc--cC--CCCEEEc-cCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-h-hcC
Confidence 456788888888888887765 3443 55 8889999 8888875433 7888889999999888874 33 3 478
Q ss_pred ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEE
Q 039327 104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRIL 183 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 183 (315)
+++|++|++++|.+.+. + .+..+++|++|++++|.++ .++. +. .+++|+.|++++|.++. .+. +..+++|+.|
T Consensus 106 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL 178 (308)
T ss_dssp CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence 88899999999888753 3 3788889999999988887 5554 44 37889999999988884 443 7888899999
Q ss_pred EccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 184 DLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 184 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 179 ~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDNKIS-DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ECCCCccC-cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 99999887 4443 3358889999999998877553 6788899999999988874
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=4e-24 Score=195.68 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=29.4
Q ss_pred ccCCCCccccCCchhh-cccCCCCEEecccCccCCCCCC-Ccc-ccccceecC
Q 039327 266 ITMPKNHLEGPIPVEF-CQLYSLHILDISDNNISGSLPS-CFH-PLYIKKVHL 315 (315)
Q Consensus 266 l~l~~~~l~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~-~~~-~~~L~~l~l 315 (315)
+++++|.+++..+..+ .++++|+.|++++|.+++..+. ... +++|++|++
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 4445555544334344 5677888888888877544433 223 677777653
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=149.58 Aligned_cols=133 Identities=27% Similarity=0.255 Sum_probs=62.4
Q ss_pred cccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEE
Q 039327 105 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILD 184 (315)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 184 (315)
+++++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34455555555444333333444555555555555444 33333332344555555555554433333344455555555
Q ss_pred ccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327 185 LSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239 (315)
Q Consensus 185 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (315)
+++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred cCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 5555544 33333333345555555555555444444444455555555555544
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.1e-20 Score=157.46 Aligned_cols=237 Identities=17% Similarity=0.108 Sum_probs=171.6
Q ss_pred EEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCc-CCCcCCCCccE-EE
Q 039327 58 QSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFR-LPIHPHRRLRF-LD 135 (315)
Q Consensus 58 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~ 135 (315)
++++- ++++++ .+|..+ .+++++|++++|+++ .+|...|+.+++|++|++++|.+.+.++ .+|.+++++.+ +.
T Consensus 12 ~~v~C-~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLC-QESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEE-ESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEe-cCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45666 666666 566654 367999999999998 5665556899999999999999866444 56888888776 45
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc-cccCcCchhhccCCC-cccEEEccCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN-QLTGEIPERLAVGCV-NLEFLALSNN 213 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~-~L~~L~l~~n 213 (315)
+..|.+. .++...+..+++|++|++.+|.+....+..+.....+..+++.++ .+. .++...+.... .++.|++++|
T Consensus 87 ~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 87 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred ccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence 5668887 666666566899999999999998555555666777888888664 555 66665554443 5889999999
Q ss_pred CCCCcccccccCCCCCCEEEcCC-CccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEec
Q 039327 214 NLKGHMFCRNFNLANLRQLQLED-NRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDI 292 (315)
Q Consensus 214 ~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l 292 (315)
.++...+..+ ...+++++++.+ |.++...+.++..+++|++|++++|+|+. +|. ..+.+|+.|.+
T Consensus 165 ~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-----------lp~--~~~~~L~~L~~ 230 (350)
T 4ay9_X 165 GIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-----------LPS--YGLENLKKLRA 230 (350)
T ss_dssp CCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-----------CCS--SSCTTCCEEEC
T ss_pred cccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-----------cCh--hhhccchHhhh
Confidence 9987655554 456789999975 56664444677889999999999999884 332 23456777776
Q ss_pred ccCccCCCCCCCccccccceecC
Q 039327 293 SDNNISGSLPSCFHPLYIKKVHL 315 (315)
Q Consensus 293 ~~n~~~~~~~~~~~~~~L~~l~l 315 (315)
.++.--..+|..-.+++|+.+++
T Consensus 231 l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 231 RSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTCTTCCCCCCTTTCCSCCEEEC
T ss_pred ccCCCcCcCCCchhCcChhhCcC
Confidence 66543347775433888887764
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.3e-19 Score=143.39 Aligned_cols=177 Identities=23% Similarity=0.276 Sum_probs=142.6
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
+.++.+++.+.. +|..+ .+++++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 456666666653 44433 568999999999998 67766555589999999999999966666688999999999999
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccccc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDIT 267 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~ 267 (315)
|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 9998 677666667999999999999999888878889999999999999999766667888999999999998643
Q ss_pred CCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc
Q 039327 268 MPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306 (315)
Q Consensus 268 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 306 (315)
+.+++++.|+++.|.+++.+|..+.
T Consensus 162 --------------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 162 --------------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp --------------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred --------------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 2455666777777777766666544
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=2.7e-22 Score=183.57 Aligned_cols=189 Identities=15% Similarity=0.030 Sum_probs=89.7
Q ss_pred hcccccceeEeecCCCcCcCc-CCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeec---------CcCCCCCC
Q 039327 102 ENNAKLETLFLINDSIGGPFR-LPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIST---------NALHGSIP 171 (315)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------n~~~~~~~ 171 (315)
..+++|++|++++|.+.+... ..+..+++|++|++++| +.+.....+...+++|++|++.+ +.++....
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 356777777777776543221 22445667777777665 32111222222355666666633 12221100
Q ss_pred ccc-cCCCCCcEEEccCccccCcCchhhccCCCcccEEEcc--C----C----------------------------CCC
Q 039327 172 SSF-GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS--N----N----------------------------NLK 216 (315)
Q Consensus 172 ~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~--~----n----------------------------~~~ 216 (315)
..+ ..+++|++|.+..+.+.+.....+...+++|+.|+++ + + .++
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~ 444 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCccc
Confidence 111 2245555555444444432222222234455555554 2 2 222
Q ss_pred CcccccccC-CCCCCEEEcCCCcccccccccc-ccCCCCcEEEccCCccccccCCCCccccCCc-hhhcccCCCCEEecc
Q 039327 217 GHMFCRNFN-LANLRQLQLEDNRFIGEIPQSL-SKCSSLEGLYLNNNSLSDITMPKNHLEGPIP-VEFCQLYSLHILDIS 293 (315)
Q Consensus 217 ~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~-~~l~~~~~L~~L~l~ 293 (315)
+.....+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|.+ ++... ..+..+++|+.|+++
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~----------~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF----------GDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC----------CHHHHHHTGGGGGGSSEEEEE
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC----------cHHHHHHHHHhCCCCCEEeee
Confidence 221222221 4445555555555443322222 3455555555555544 32223 344568999999999
Q ss_pred cCccCCCC
Q 039327 294 DNNISGSL 301 (315)
Q Consensus 294 ~n~~~~~~ 301 (315)
+|.++...
T Consensus 515 ~~~~~~~~ 522 (594)
T 2p1m_B 515 SCSVSFGA 522 (594)
T ss_dssp SSCCBHHH
T ss_pred CCCCCHHH
Confidence 99885443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.9e-19 Score=160.83 Aligned_cols=178 Identities=25% Similarity=0.310 Sum_probs=117.7
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+++.|++ +++.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 60 ~L~~L~L-s~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQL-NRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEEC-CSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEe-CCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 6777777 6777765 55544 267777777777776 555 236777777777777765 554 443 777777
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.++ .+|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+. .+|. + .++|+.|++++|.+
T Consensus 127 Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~-~lp~--l--~~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 127 VDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT-FLPE--L--PESLEALDVSTNLL 192 (571)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC--C--CTTCCEEECCSSCC
T ss_pred CCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-Ccch--h--hCCCCEEECcCCCC
Confidence 7777776 4665 26677777777777773 554 4567777777777776 4655 2 16777777777777
Q ss_pred CCcccccccCCCCC-------CEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327 216 KGHMFCRNFNLANL-------RQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 216 ~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
+... . +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+..
T Consensus 193 ~~lp-~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 193 ESLP-A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCC-C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred Cchh-h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 6433 2 322 55 77777777777 456666667777777777776553
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=8.8e-19 Score=145.80 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=137.8
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
++..+.+ ....+.+.. .+..+++|+.|++++|.++. ++. +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 25 ~~~~~~l-~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 25 ETIKDNL-KKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHT-TCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHh-cCCCccccc--chhhcCcccEEEccCCCccc-Chh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 3444455 444444322 24567888899998888863 343 4778889999999988876443 78888899999
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.++ .++. +.. +++|++|++++|.++. + ..+..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+
T Consensus 97 l~~n~l~-~~~~-l~~-l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 97 LDENKVK-DLSS-LKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DIT-V-LSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CCSSCCC-CGGG-GTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCC
T ss_pred CCCCcCC-CChh-hcc-CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cch-h-hccCCCCCEEEccCCcc
Confidence 9888887 4443 443 7888888888888874 3 35778888888888888887 442 2 33578888888888888
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcccc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
.+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+..
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 77554 6778888888888888874 33 36778888888888887764
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5.2e-19 Score=159.22 Aligned_cols=187 Identities=21% Similarity=0.259 Sum_probs=146.4
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
+|++|++++|.++++|..+.. +|++|++ ++|.++ .+| ..+++|++|++++|.+++ +|. + .. +|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~------~L~~L~L-s~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPP------QITVLEI-TQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-PA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCT------TCSEEEC-CSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-CT--TCC
T ss_pred CccEEEeCCCCCCccCHhHcC------CCCEEEC-cCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-hc--CCC
Confidence 788899998888887776432 7999999 888887 566 457889999999998885 666 3 33 899
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 188 (315)
+|++++|.+.+ +|. .+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. +. ++|+.|++++|
T Consensus 124 ~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred EEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence 99999998886 554 5788999999999887 5766 36789999999998884 666 55 88999999999
Q ss_pred cccCcCchhhccCCCcc-------cEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccC
Q 039327 189 QLTGEIPERLAVGCVNL-------EFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKC 250 (315)
Q Consensus 189 ~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 250 (315)
.+. .+|. +. .+| +.|++++|.++.. |..+..+++|+.|++++|.+++..|..+..+
T Consensus 191 ~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VP---VRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HH---HhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 888 7776 32 266 9999999998864 5555668999999999999988877776654
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.1e-18 Score=143.51 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=151.6
Q ss_pred cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
.++..+.+....+.+.... . .++ ++++|++ +++.+... + .+..+++|++|++++|.+++..+ +..+++|
T Consensus 24 ~~~~~~~l~~~~~~~~~~~-~--~l~--~L~~L~l-~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L 92 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQ-N--ELN--SIDQIIA-NNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNL 92 (291)
T ss_dssp HHHHHHHTTCSCTTSEECH-H--HHH--TCCEEEC-TTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred HHHHHHHhcCCCcccccch-h--hcC--cccEEEc-cCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc---cccCCCC
Confidence 3344555666655552211 1 133 8999999 88888743 3 48889999999999999985433 4899999
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
++|++++|.+.+ + ..+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 93 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 93 GWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-hhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence 999999999876 3 34889999999999999998 553 4444 89999999999999854 5688999999999999
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (315)
|.+. .++. +..+++|+.|++++|.+++. + .+..+++|+.|++++|.++..
T Consensus 166 N~l~-~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 166 NQIS-DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SCCC-CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred Cccc-cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 9998 4444 44699999999999999875 2 478899999999999998753
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.6e-18 Score=137.11 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=117.8
Q ss_pred cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327 30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET 109 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 109 (315)
-+.++++++.++.+|..+.. ++++|++ ++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~------~L~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPT------NAQILYL-HDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCccCCCCCC------CCCEEEc-CCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCE
Confidence 56788888888888876443 8888888 888888777777888888888888888886 445444577888888
Q ss_pred eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCcc
Q 039327 110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQ 189 (315)
Q Consensus 110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 189 (315)
|++++|.+.+..+..+..+++|++|++++|.+. .+|..+.. +++|+.|++++|.++...+..+..+++|+.|++++|.
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 888888887666666778888888888888887 77777655 7788888888888875555567777888888888877
Q ss_pred ccCc
Q 039327 190 LTGE 193 (315)
Q Consensus 190 ~~~~ 193 (315)
+...
T Consensus 171 ~~c~ 174 (229)
T 3e6j_A 171 WDCE 174 (229)
T ss_dssp BCTT
T ss_pred ccCC
Confidence 7643
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.2e-18 Score=136.15 Aligned_cols=152 Identities=23% Similarity=0.225 Sum_probs=89.4
Q ss_pred cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186 (315)
Q Consensus 107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 186 (315)
-+.++.+++.+. .+|..+ .++|++|++++|.+.+..|..+. .+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 445666665554 344333 25666677766666632233333 36666667766666664434445666666666666
Q ss_pred CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+|.+. .++...+..+++|+.|++++|.+.. .|..+..+++|++|++++|.+++..+..+..+++|+.|++.+|.+.
T Consensus 97 ~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCC-ccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666 4554444456666666666666663 3445556666666666666666444455666666666666666544
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5.8e-18 Score=153.93 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=145.6
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
.+..+.+ ....+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 22 ~l~~l~l-~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNL-KKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHT-TCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHhc-cCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 4445555 5555544332 567888999999998886 3443 4788999999999998886444 78889999999
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNL 215 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (315)
+++|.+. .++ .+.. +++|+.|++++|.+.. + ..+..+++|+.|++++|.+. .+ .. +..+++|+.|++++|.+
T Consensus 94 Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~-l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 94 LDENKIK-DLS-SLKD-LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp CCSSCCC-CCT-TSTT-CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GG-GGSCTTCSEEECCSSCC
T ss_pred CcCCCCC-CCh-hhcc-CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hh-hcccCCCCEEECcCCcC
Confidence 9999887 554 4444 8889999999998884 3 35788899999999999887 44 23 34688899999999988
Q ss_pred CCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccc
Q 039327 216 KGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDI 266 (315)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l 266 (315)
.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 87655 77888999999999988753 3577888999999998887753
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.3e-18 Score=136.39 Aligned_cols=154 Identities=23% Similarity=0.223 Sum_probs=124.6
Q ss_pred cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186 (315)
Q Consensus 107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 186 (315)
-++++++++.+.. +|..+ .+.+++|++++|.+++..+...+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3578888888874 56544 34578999999988743344444458899999999999886666678889999999999
Q ss_pred CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 90 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99988 666665667889999999999998888888888999999999999998777888888999999999988765
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.7e-18 Score=136.12 Aligned_cols=152 Identities=15% Similarity=0.152 Sum_probs=101.4
Q ss_pred ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327 31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL 110 (315)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 110 (315)
+.++++++.++.+|..+.. +++.|++ +++.+.+..+..+..+++|+.|++++|.+++..|.. +..+++|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~~------~l~~L~l-~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPE------TITEIRL-EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSCCSSCCT------TCCEEEC-CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEE
T ss_pred CEEEcCCCCcCcCCCccCc------CCCEEEC-CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEE
Confidence 5677777777777776433 7788888 777777655566777777777777777776555555 3667777777
Q ss_pred EeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccc
Q 039327 111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQL 190 (315)
Q Consensus 111 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 190 (315)
++++|.+....+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77777776544455666777777777777776 33333333366777777777776655555566666777777776665
Q ss_pred c
Q 039327 191 T 191 (315)
Q Consensus 191 ~ 191 (315)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 4
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=136.79 Aligned_cols=156 Identities=13% Similarity=0.094 Sum_probs=105.1
Q ss_pred cceeecccccccccccccccCCCCccccEEEEeccCCCCccccc-cccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFP-KFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
-++++++++.++.+|..+.. .+++|++ ++|.+.+..+ ..+..+++|+.|++++|.+++..+.. +..+++|+
T Consensus 13 ~~~l~~s~n~l~~iP~~~~~------~~~~L~L-~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIPQ------YTAELRL-NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSSCCSCCCT------TCSEEEC-CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-TTTCTTCC
T ss_pred CCEeEeCCCCcccCccCCCC------CCCEEEc-CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-hCCCCCCC
Confidence 35778888877777776443 6678888 7777776533 34667777777777777776444434 46777777
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCc
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSN 188 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 188 (315)
+|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..|..+++|+.|++++|
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 777777777766666677777777777777777633333333 3667777777777777555666777777777777777
Q ss_pred cccCcC
Q 039327 189 QLTGEI 194 (315)
Q Consensus 189 ~~~~~~ 194 (315)
.+....
T Consensus 164 ~l~c~c 169 (220)
T 2v70_A 164 PFNCNC 169 (220)
T ss_dssp CEECSG
T ss_pred CCcCCC
Confidence 665433
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.7e-18 Score=134.60 Aligned_cols=154 Identities=16% Similarity=0.122 Sum_probs=110.3
Q ss_pred cCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhc
Q 039327 24 LFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLEN 103 (315)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 103 (315)
...+++|++|++++|.++.+| .+.. ++ +|++|++ ++|.+.. +..+..+++|++|++++|.+++..+..+ +.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~--l~--~L~~L~l-~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~ 110 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEY--AH--NIKDLTI-NNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL-SG 110 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGG--CT--TCSEEEE-ESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC-TT
T ss_pred hhhcCCccEEeccCCCccChH-HHhc--CC--CCCEEEc-cCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh-cC
Confidence 356777888888888777766 4443 55 7888888 6665542 3467778888888888888876556554 67
Q ss_pred ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCc-CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcE
Q 039327 104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN-FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRI 182 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 182 (315)
+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++ .+.. +++|++|++++|.++. .+ .+..+++|+.
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~-l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKT-LPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGG-CSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcC-CCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 8888888888888876666777788888888888887 55 665 3443 7788888888888773 33 5777888888
Q ss_pred EEccCcccc
Q 039327 183 LDLSSNQLT 191 (315)
Q Consensus 183 L~l~~n~~~ 191 (315)
|++++|.+.
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 888888764
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.5e-18 Score=134.69 Aligned_cols=152 Identities=23% Similarity=0.243 Sum_probs=82.2
Q ss_pred CeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEee
Q 039327 83 EDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNIS 162 (315)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (315)
+.++++++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.. +++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECC
Confidence 45566665555 445432 245666666666666544445666666666666666665222333333 5566666666
Q ss_pred cCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 163 TNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 163 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
+|.++...+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66655333334455556666666666555 333333334555555555555555555555555555555555555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=7.7e-18 Score=153.13 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=157.2
Q ss_pred CcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccc
Q 039327 27 HSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK 106 (315)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 106 (315)
+..+..+.++.+.+..+... . .++ .|+.|++ +++.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++
T Consensus 20 l~~l~~l~l~~~~i~~~~~~-~--~L~--~L~~L~l-~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~ 88 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ-N--ELN--SIDQIIA-NNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKN 88 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH-H--HHT--TCCCCBC-TTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTT
T ss_pred HHHHHHHhccCCCcccccch-h--cCC--CCCEEEC-cCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh---hccCCC
Confidence 44566677777776663221 1 144 8999999 8888874 33 58899999999999999985444 489999
Q ss_pred cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186 (315)
Q Consensus 107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 186 (315)
|++|++++|.+.+ +..+..+++|++|++++|.+. .++ .+.. +++|+.|++++|.++.. ..+..+++|+.|+++
T Consensus 89 L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 89 LGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS-DIN-GLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCC-CCG-GGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCC-CCc-cccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 9999999999985 347899999999999999998 554 4444 89999999999999854 568999999999999
Q ss_pred CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243 (315)
Q Consensus 187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (315)
+|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 162 ~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 162 DNQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp SSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCcCCCchh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 999984444 44699999999999999875 45788999999999999988543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=147.98 Aligned_cols=132 Identities=26% Similarity=0.244 Sum_probs=56.2
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
+|++|++ ++|.+.+..+..+..+++|++|++++|.++...+. .+..+++|++|++++|.+....+..|..+++|++|+
T Consensus 65 ~L~~L~L-~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 65 NLHSLLL-SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp TCCEEEC-CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEC-CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 4444444 44444443334444444444444444444422221 124444444444444444443344444444444444
Q ss_pred cccCcCCCCCchhhh---hcCCCceEEEeecCcCCCCCCccccCCCC--CcEEEccCccc
Q 039327 136 VSNNNFQGHIPVEIG---DILPSLFSFNISTNALHGSIPSSFGNMNF--LRILDLSSNQL 190 (315)
Q Consensus 136 l~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~~ 190 (315)
+++|.++ .+|...+ ..+++|+.|++++|.++...+..+..++. ++.|++++|.+
T Consensus 143 L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 4444444 3443332 12444444444444444222223333333 23444444443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=7e-18 Score=132.22 Aligned_cols=151 Identities=16% Similarity=0.237 Sum_probs=73.9
Q ss_pred CCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccE
Q 039327 128 HRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEF 207 (315)
Q Consensus 128 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 207 (315)
+++|++|++++|.+. .+| .+.. +++|++|++++|.++ . +..+..+++|++|++++|.+.+..+..+. .+++|+.
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~ 116 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTL 116 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTCCE
T ss_pred cCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhc-CCCCCCE
Confidence 344444444444444 333 2222 444444444444333 1 12344445555555555544432333322 3455555
Q ss_pred EEccCCCCCCcccccccCCCCCCEEEcCCCc-cccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCC
Q 039327 208 LALSNNNLKGHMFCRNFNLANLRQLQLEDNR-FIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYS 286 (315)
Q Consensus 208 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~ 286 (315)
|++++|.+.+..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+.. ++ .+..+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-----------~~-~l~~l~~ 182 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-----------YR-GIEDFPK 182 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-----------CT-TGGGCSS
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-----------hH-HhccCCC
Confidence 5555555544444445555566666666665 33 333 45566666666666666552 22 4556666
Q ss_pred CCEEecccCccC
Q 039327 287 LHILDISDNNIS 298 (315)
Q Consensus 287 L~~L~l~~n~~~ 298 (315)
|+.|++++|++.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 777777777664
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.9e-18 Score=147.17 Aligned_cols=178 Identities=24% Similarity=0.216 Sum_probs=127.6
Q ss_pred cEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhh-cccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 57 LQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLE-NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 57 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
-+.++. +++.+. .+|..+. ..++.|++++|.+++..+.. +. .+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 20 ~~~l~c-~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~-~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSC-SKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEW-TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEEC-CSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTS-SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEe-CCCCcC-ccCccCC--CCCCEEECCCCCCCccChhh-hhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 456777 666666 3554433 45788888888887544443 34 778888888888888776667788888888888
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhc---cCCCcccEEEccC
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLA---VGCVNLEFLALSN 212 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~~L~~L~l~~ 212 (315)
+++|.++ .++...+..+++|++|++++|.++...+..|..+++|+.|++++|.+. .+|...+ ..+++|+.|++++
T Consensus 95 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCS
T ss_pred CCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCC
Confidence 8888887 555554445788888888888887666777888888888888888887 6666654 3477788888888
Q ss_pred CCCCCcccccccCCCC--CCEEEcCCCcccc
Q 039327 213 NNLKGHMFCRNFNLAN--LRQLQLEDNRFIG 241 (315)
Q Consensus 213 n~~~~~~~~~~~~~~~--L~~L~l~~n~~~~ 241 (315)
|.+....+..+..++. ++.|++.+|.+..
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 8887766556666655 3678888877653
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.8e-18 Score=141.72 Aligned_cols=168 Identities=18% Similarity=0.197 Sum_probs=92.4
Q ss_pred CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceE
Q 039327 79 QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFS 158 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 158 (315)
+.++..++++++.+++. + . +..+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .++. +. .+++|++
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~-~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-S-QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-C-HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCE
T ss_pred HHHHHHHHhcCCCcccc-c-c-hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCE
Confidence 34445555555555422 2 1 2556666666666666553 22 4556666666666666665 4444 33 2566666
Q ss_pred EEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCc
Q 039327 159 FNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNR 238 (315)
Q Consensus 159 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 238 (315)
|++++|.+++ +|.. .. ++|+.|++++|.+. .++. +..+++|+.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELR-DTDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCS-BSGG--GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSC
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccC-CChh--hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCc
Confidence 6666666653 3322 22 56666666666665 3332 22456666666666666553 144556666666666666
Q ss_pred cccccccccccCCCCcEEEccCCccc
Q 039327 239 FIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 239 ~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+++. ..+..+++|+.|++++|.+.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred Ccch--HHhccCCCCCEEeCCCCccc
Confidence 6543 44555666666666666554
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.4e-18 Score=147.21 Aligned_cols=282 Identities=16% Similarity=0.057 Sum_probs=169.2
Q ss_pred CccceEEeecCcccccCCCcccCC-Ccccceeecccccccc--cccccccCCCCccccEEEEeccCCCCcccccccccc-
Q 039327 3 TSIEELYLSNNHFQIPISLEPLFN-HSRLKRLWAYNNEIKA--EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYH- 78 (315)
Q Consensus 3 ~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~- 78 (315)
+.+++|.++++--...+ ..+.. +++|++|+|++|++.. .+.. .++ .++.+.. ..+.+ -..+|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~----~~~--~~~~~~~-~~~~I---~~~aF~~~ 92 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAG----TYP--NGKFYIY-MANFV---PAYAFSNV 92 (329)
T ss_dssp HHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSS----SSG--GGCCEEE-CTTEE---CTTTTEEE
T ss_pred CceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccc----ccc--ccccccc-ccccc---CHHHhccc
Confidence 45777888765221111 23433 6778888888888873 2222 133 2333444 33321 2234555
Q ss_pred -------CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcC---CCCCchh
Q 039327 79 -------QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF---QGHIPVE 148 (315)
Q Consensus 79 -------~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~~~~~ 148 (315)
+++|+.+++.+ .++ .++...|..|++|+++++.+|.+....+.+|..+.++..+....... ...+...
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred ccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 88888888887 665 45555568888888888888877766677787777777666644211 0022222
Q ss_pred hhhcCCCce-EEEeecCcCCCCCCccc----cCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccc
Q 039327 149 IGDILPSLF-SFNISTNALHGSIPSSF----GNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRN 223 (315)
Q Consensus 149 ~~~~~~~L~-~L~l~~n~~~~~~~~~l----~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 223 (315)
.+..+..|+ .+.+.... .++..+ ....+++.+.+.++-.. .-...+...+++|+.+++++|.+..+...+|
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 222355555 33333221 122111 12344555555443211 1111222236778888888877777777778
Q ss_pred cCCCCCCEEEcCCCccccccccccccCCCCc-EEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCC
Q 039327 224 FNLANLRQLQLEDNRFIGEIPQSLSKCSSLE-GLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLP 302 (315)
Q Consensus 224 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 302 (315)
..+++|+++++.+| ++...+.+|..+++|+ .+++.+ .+..|. +.+|.+|++|+.+++++|.++...+
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----------~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----------FGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC----------TTTTTTCTTEEEEEECSSCCCEECT
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc----------hhhhhCCccCCEEEeCCCccCccch
Confidence 88888888888776 5555567777888888 888876 555433 5778888888888888888876666
Q ss_pred CCcc-ccccceec
Q 039327 303 SCFH-PLYIKKVH 314 (315)
Q Consensus 303 ~~~~-~~~L~~l~ 314 (315)
..|. |++|+.++
T Consensus 315 ~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCCCEEE
T ss_pred hhhcCCcchhhhc
Confidence 6777 88888775
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.9e-17 Score=140.26 Aligned_cols=194 Identities=13% Similarity=0.095 Sum_probs=119.6
Q ss_pred ccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCc----CCCCCCccccCCCC
Q 039327 104 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNA----LHGSIPSSFGNMNF 179 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~----~~~~~~~~l~~~~~ 179 (315)
+++|+++++.+ .+......+|..|++|+.+++.++.+. .++...+..+.++..+...... ........|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66677776666 555445556666677777777666655 4555444444444444433311 11122233444555
Q ss_pred Cc-EEEccCccccCcCchhhcc---CCCcccEEEccCCCCCCcccccc-cCCCCCCEEEcCCCccccccccccccCCCCc
Q 039327 180 LR-ILDLSSNQLTGEIPERLAV---GCVNLEFLALSNNNLKGHMFCRN-FNLANLRQLQLEDNRFIGEIPQSLSKCSSLE 254 (315)
Q Consensus 180 L~-~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 254 (315)
|+ .+.+... +.++...+. ...+++.+.+.++-... ....+ ..+++|+.+++.+|.++...+.+|..+++|+
T Consensus 178 L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 178 LETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 54 3333322 122222221 23445556555542111 11111 2388999999999999877778899999999
Q ss_pred EEEccCCccccccCCCCccccCCchhhcccCCCC-EEecccCccCCCCCCCcc-ccccceecC
Q 039327 255 GLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLH-ILDISDNNISGSLPSCFH-PLYIKKVHL 315 (315)
Q Consensus 255 ~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~-~~~L~~l~l 315 (315)
.+++.+| +..|. +.+|.+|++|+ .+++.+ .++...+..|. |++|+.+++
T Consensus 254 ~l~l~~n-i~~I~----------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 254 KIKLPHN-LKTIG----------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp EEECCTT-CCEEC----------TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred EEECCcc-cceeh----------HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 9999987 66544 67899999999 999999 77756678888 999998864
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.3e-19 Score=163.70 Aligned_cols=105 Identities=30% Similarity=0.366 Sum_probs=61.3
Q ss_pred CceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEc
Q 039327 155 SLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQL 234 (315)
Q Consensus 155 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 234 (315)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++. | .+..+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALENV-D-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEEC
Confidence 35556666665552 443 555666666666666655 5555443 356666666666666552 3 4556666666666
Q ss_pred CCCcccccc-ccccccCCCCcEEEccCCcccc
Q 039327 235 EDNRFIGEI-PQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 235 ~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
++|.+++.. |..++.+++|+.|++++|.+..
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 666666444 5666666666666666666553
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.8e-17 Score=133.87 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=66.6
Q ss_pred cccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCC
Q 039327 76 LYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPS 155 (315)
Q Consensus 76 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 155 (315)
+..+++|+.|++++|.++ .++ . +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++.... ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~---~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS---AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC---SS
T ss_pred hhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc---Cc
Confidence 334444444444444443 222 1 2344444444444444443222 444444444444444444 2332111 34
Q ss_pred ceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327 156 LFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235 (315)
Q Consensus 156 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 235 (315)
|++|++++|.+++ .+ .+..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|+++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 5555555554442 22 2445555555555555554 232 1 12345555555555555443 334455555555555
Q ss_pred CCccc
Q 039327 236 DNRFI 240 (315)
Q Consensus 236 ~n~~~ 240 (315)
+|.+.
T Consensus 181 ~N~~~ 185 (263)
T 1xeu_A 181 GQKCV 185 (263)
T ss_dssp EEEEE
T ss_pred CCccc
Confidence 55544
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=6.8e-19 Score=159.06 Aligned_cols=203 Identities=20% Similarity=0.136 Sum_probs=145.5
Q ss_pred ccCCCCCeEEecCceecccCChhhhhcccccceeEeecCC-------------CcCcCcCCCcCCCCccEEE-cccCcCC
Q 039327 77 YHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS-------------IGGPFRLPIHPHRRLRFLD-VSNNNFQ 142 (315)
Q Consensus 77 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~ 142 (315)
..+++|+.|++++|.++ .+|..+ +.+++|++|++++|. ..+..|..+..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-
Confidence 56778888888888886 677775 788888888876653 1222233333333444333 222211
Q ss_pred CCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCccccc
Q 039327 143 GHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCR 222 (315)
Q Consensus 143 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 222 (315)
..|..+.+.+|.++ .++. ..|+.|++++|.+. .+|. + ..+++|+.|++++|.++ .+|..
T Consensus 423 -----------~~L~~l~l~~n~i~-~l~~-----~~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVL-KMEY-----ADVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp -----------HHHHHHHHHHHHHH-HHHH-----TTCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGG
T ss_pred -----------chhhhhhhhccccc-ccCc-----cCceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchh
Confidence 12222233344433 1111 25899999999998 6776 4 46999999999999998 45778
Q ss_pred ccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCC-chhhcccCCCCEEecccCccCCCC
Q 039327 223 NFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPI-PVEFCQLYSLHILDISDNNISGSL 301 (315)
Q Consensus 223 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~-~~~l~~~~~L~~L~l~~n~~~~~~ 301 (315)
+..+++|+.|++++|.+++ +| .++.+++|+.|++++|.+.. .. |..++.+++|+.|++++|.+++.+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~----------~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ----------SAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS----------SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC----------CCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 9999999999999999995 56 78999999999999998874 32 788999999999999999999666
Q ss_pred CCCc---c-ccccceecC
Q 039327 302 PSCF---H-PLYIKKVHL 315 (315)
Q Consensus 302 ~~~~---~-~~~L~~l~l 315 (315)
|... . +++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 5442 2 789998875
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=9.9e-18 Score=155.97 Aligned_cols=196 Identities=17% Similarity=0.193 Sum_probs=113.8
Q ss_pred cccceeeccccccccccccccc-CCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHS-LTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAK 106 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 106 (315)
++++.|+|..+.+...+..+.. +.+....+..+++ .++.+. ..++.+..++.|+.|++++|.+. .+|..+ ..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~-~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~-~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD-IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANI-FKYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGG-GGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccc-ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhh-cCCCC
Confidence 5678888888877765444221 0011112333333 333333 45677888999999999999987 777776 58899
Q ss_pred cceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327 107 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186 (315)
Q Consensus 107 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 186 (315)
|++|+|++|.+. .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..|+.+++|+.|+++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 999999999998 67888999999999999999998 88888876 889999999999987 778889999999999999
Q ss_pred CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCC
Q 039327 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDN 237 (315)
Q Consensus 187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 237 (315)
+|.+.+.+|..+.........+++++|.+.+..|. .+..++++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 99998766665542111223467788887765554 3455556555
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=6.9e-15 Score=127.41 Aligned_cols=248 Identities=11% Similarity=0.120 Sum_probs=138.7
Q ss_pred cccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhh
Q 039327 22 EPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLL 101 (315)
Q Consensus 22 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 101 (315)
.+|.++ +|+.+.+..+ ++.+....+ ..++|+.+.+ .. .+......++.+|.+|+.++++++.++ .++...|
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF----~~~~L~~i~l-p~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF 200 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAF----FNSTVQEIVF-PS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTF 200 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTT----TTCCCCEEEC-CT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTT
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhc----CCCCceEEEe-CC-CccEehHHHhhCcccCCeeecCCCcce-EechhhE
Confidence 455554 5667666554 555444432 2236777777 43 444444556666777777777666665 3444333
Q ss_pred hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327 102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181 (315)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 181 (315)
. +++|+.+.+..+ +......+|..+++|+.+.+..+ ++ .++...+.. .+|+.+.+.. .++......|..+++|+
T Consensus 201 ~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 201 V-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELA 274 (401)
T ss_dssp T-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCC
T ss_pred e-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCC
Confidence 3 466777766643 44444556666777777776553 33 444444443 4666666643 34434455666667777
Q ss_pred EEEccCcccc----CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEE
Q 039327 182 ILDLSSNQLT----GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLY 257 (315)
Q Consensus 182 ~L~l~~n~~~----~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 257 (315)
.+.+.++... ..++...|..|++|+.+.+.. .+......+|..+.+|+.+.+..+ ++.....+|..+ +|+.+.
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence 7766665432 124555555666677666663 355555566666666777666443 443445556666 666666
Q ss_pred ccCCccccccCCCCccccCCchhhcccC-CCCEEecccCcc
Q 039327 258 LNNNSLSDITMPKNHLEGPIPVEFCQLY-SLHILDISDNNI 297 (315)
Q Consensus 258 l~~n~i~~l~l~~~~l~~~~~~~l~~~~-~L~~L~l~~n~~ 297 (315)
+.+|.+..+. ...|.+++ +++.|.+-.+.+
T Consensus 352 l~~n~~~~l~----------~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 352 VEGTTPPQVF----------EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECCSSCCBCC----------CSSCCCSCTTCCEEEECGGGH
T ss_pred EcCCCCcccc----------cccccCCCCCccEEEeCHHHH
Confidence 6666554322 33444443 455666555443
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=7.2e-16 Score=117.53 Aligned_cols=136 Identities=23% Similarity=0.219 Sum_probs=83.0
Q ss_pred CCceEEEeecCcCC-CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEE
Q 039327 154 PSLFSFNISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL 232 (315)
Q Consensus 154 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 232 (315)
+++++|++++|.++ +.+|..+..+++|+.|++++|.+. .+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45666666666655 445555566666666666666665 23 222346666666666666665555555556677777
Q ss_pred EcCCCcccccc-ccccccCCCCcEEEccCCccccccCCCCccccCCc---hhhcccCCCCEEecccCccCCCCCC
Q 039327 233 QLEDNRFIGEI-PQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP---VEFCQLYSLHILDISDNNISGSLPS 303 (315)
Q Consensus 233 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~~ 303 (315)
++++|.+++.. +..+..+++|++|++++|.+..+. + ..+..+++|+.|++++|.+. .+|+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~----------~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN----------DYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST----------THHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH----------HHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 77777766432 255666777777777777666311 2 36777777888888877776 4443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.9e-15 Score=115.13 Aligned_cols=134 Identities=22% Similarity=0.270 Sum_probs=93.5
Q ss_pred CCCCCeEEecCceec-ccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCce
Q 039327 79 QHDLEDVHLSHIKMN-GKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLF 157 (315)
Q Consensus 79 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 157 (315)
.++|+.|++++|.++ +.+|.. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.. +++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCC
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCC
Confidence 467778888887776 566665 36778888888888877654 66777888888888888877445555444 77888
Q ss_pred EEEeecCcCCCCC-CccccCCCCCcEEEccCccccCcCch---hhccCCCcccEEEccCCCCCC
Q 039327 158 SFNISTNALHGSI-PSSFGNMNFLRILDLSSNQLTGEIPE---RLAVGCVNLEFLALSNNNLKG 217 (315)
Q Consensus 158 ~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~ 217 (315)
+|++++|.+++.. +..+..+++|+.|++++|.+. ..+. ..+..+++|+.|++++|.+.+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888777422 156777778888888888776 4443 334457777777777776654
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=7.4e-15 Score=127.20 Aligned_cols=257 Identities=10% Similarity=0.050 Sum_probs=181.0
Q ss_pred cccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccc
Q 039327 28 SRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKL 107 (315)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 107 (315)
..++++.+.+. ++.++...+ ..++|+.+.+ ..+ +......+|.++ +|+.+.+.. .++ .+....|..|++|
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF----~~~~L~~i~l-~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L 182 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAF----RNSQIAKVVL-NEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNL 182 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTT----TTCCCSEEEC-CTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTC
T ss_pred CCccEEEECCc-cCEehHhhc----ccCCccEEEe-CCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccC
Confidence 45555655442 444444433 2347888888 443 554555566664 688888876 343 3444446888999
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
+.+++.+|.+......+|. +.+|+.+.+..+ +. .++...+..+++|+.+++..+ ++.....+|.. .+|+.+.+..
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC
Confidence 9999988887765555666 578999888754 55 666666766888999998875 44344556666 6789988854
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCC-----CcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLK-----GHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNS 262 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 262 (315)
.+. .++...|..|++|+.+++.++.+. .....+|..|++|+.+.+.. .++.....++..|++|+.+.+..+
T Consensus 258 -~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 258 -GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp -TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred -Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 455 677777778999999999887765 35667888999999999984 466566678888999999998654
Q ss_pred cccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc-c-cccceec
Q 039327 263 LSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH-P-LYIKKVH 314 (315)
Q Consensus 263 i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~-~~L~~l~ 314 (315)
+..++ ..+|.+| +|+.+++.+|.........|. + ..++.++
T Consensus 334 l~~I~----------~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 334 VTQIN----------FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp CCEEC----------TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred ccEEc----------HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 55433 6789999 999999999988755566666 5 3565554
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.9e-15 Score=117.70 Aligned_cols=129 Identities=27% Similarity=0.347 Sum_probs=111.2
Q ss_pred ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCc-cccCCCCCcEEEccCccccCcCchhhccCCCcccEEE
Q 039327 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS-SFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLA 209 (315)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 209 (315)
.++++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+.+..|.. +..+++|+.|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~ 84 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEE
T ss_pred CCEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEE
Confidence 378999999997 8887654 4899999999999855553 4889999999999999998444544 44699999999
Q ss_pred ccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccc
Q 039327 210 LSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 210 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999988888899999999999999999888889999999999999999876
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.6e-15 Score=114.66 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=111.6
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCch-hhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEcc
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPV-EIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLS 186 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 186 (315)
++++++++.+. .+|..+. .++++|++++|.+. .++. ..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 78999999886 4666553 48999999999998 5554 334459999999999999998878899999999999999
Q ss_pred CccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCcccccc
Q 039327 187 SNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEI 243 (315)
Q Consensus 187 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 243 (315)
+|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99998 555555557999999999999999988899999999999999999988653
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=9.6e-15 Score=113.77 Aligned_cols=127 Identities=26% Similarity=0.286 Sum_probs=69.5
Q ss_pred ceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccC
Q 039327 108 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSS 187 (315)
Q Consensus 108 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 187 (315)
++++++++.+. .+|..+ .+++++|++++|.++ .+|..+.. +++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 44555555554 234332 245666666666665 55544433 55666666666666544444555666666666666
Q ss_pred ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccc
Q 039327 188 NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFI 240 (315)
Q Consensus 188 n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 240 (315)
|.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6655 344333334555666666666655544445555555666666555554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.8e-15 Score=111.88 Aligned_cols=128 Identities=22% Similarity=0.201 Sum_probs=80.9
Q ss_pred CCCceEEEeecCcCC-CCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327 153 LPSLFSFNISTNALH-GSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231 (315)
Q Consensus 153 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 231 (315)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+. .+ ..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 346777777777776 556666677777777777777776 33 22334667777777777776655555555667777
Q ss_pred EEcCCCccccc-cccccccCCCCcEEEccCCccccccCCCCccccCCc---hhhcccCCCCEEecc
Q 039327 232 LQLEDNRFIGE-IPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIP---VEFCQLYSLHILDIS 293 (315)
Q Consensus 232 L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~---~~l~~~~~L~~L~l~ 293 (315)
|++++|.+++. .+..+..+++|++|++++|.+..+. + ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN----------DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST----------THHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH----------HHHHHHHHHCCCcccccCC
Confidence 77777776642 2355666666777777666665321 2 356666666666665
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.6e-15 Score=112.00 Aligned_cols=109 Identities=26% Similarity=0.356 Sum_probs=49.0
Q ss_pred CCCcEEEccCcccc-CcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEE
Q 039327 178 NFLRILDLSSNQLT-GEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGL 256 (315)
Q Consensus 178 ~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 256 (315)
++++.|++++|.+. +.+|..+ ..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34445555555444 3333322 2344455555555544443 334444455555555555443344444444455555
Q ss_pred EccCCccccccCCCCccccCCchhhcccCCCCEEecccCccC
Q 039327 257 YLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 257 ~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~ 298 (315)
++++|.+..+. .+..++.+++|+.|++++|.++
T Consensus 94 ~ls~N~i~~~~---------~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 94 NLSGNKIKDLS---------TIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ECTTSCCCSHH---------HHGGGGGCTTCCEEECTTCGGG
T ss_pred ECCCCcCCChH---------HHHHHhhCCCCCEEeCcCCccc
Confidence 55544444211 1134444455555555555544
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=6.1e-15 Score=114.88 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=75.1
Q ss_pred ceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhccccccee
Q 039327 31 KRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETL 110 (315)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 110 (315)
++++++++.++.+|..+.. ++++|++ ++|.+. .+|..+.++++|+.|++++|.+++..+.. |..+++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~~------~l~~L~L-~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPR------DVTELYL-DGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSCCCT------TCCEEEC-CSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCCCCC------CCCEEEC-CCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEE
Confidence 5667777777766665332 6777777 666665 45566666666666666666666433333 3566666666
Q ss_pred EeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327 111 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 111 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 167 (315)
++++|.+....+..|..+++|++|++++|.++ .++...+..+++|+.|++.+|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 66666666555555666666666666666655 444443333555555555555443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=2.5e-14 Score=109.87 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=59.3
Q ss_pred cEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327 132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS 211 (315)
Q Consensus 132 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 211 (315)
+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|+++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 34444444443 344322 234455555555444333333444555555555555544 3333333344555555555
Q ss_pred CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCcc
Q 039327 212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSL 263 (315)
Q Consensus 212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 263 (315)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5555544444444555555555555555433333344455555555555543
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.2e-16 Score=146.94 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=74.5
Q ss_pred ccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEE
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 135 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 135 (315)
.|+.|++ ++|.+. .+|..+..+++|++|++++|.++ .+|..+ +.+++|++|+|++|.+. .+|..+..+++|++|+
T Consensus 225 ~L~~L~L-s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 225 LWHALDL-SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCEEEC-TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCcEEEC-CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 5666666 555555 45555556666666666666665 555553 56666666666666665 4556666666666666
Q ss_pred cccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCC-CcEEEccCccccCc
Q 039327 136 VSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNF-LRILDLSSNQLTGE 193 (315)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~~~~~ 193 (315)
+++|.+. .+|..+.. +++|+.|++++|.+++..|..+..... ...+++++|.+.+.
T Consensus 300 L~~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp CCSSCCC-CCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCC-ccChhhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 6666665 56655443 566666666666666555544432211 11244555555433
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=9.7e-15 Score=112.22 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=64.7
Q ss_pred cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327 30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET 109 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 109 (315)
.+.++++++.++.+|..+.. ++++|++ +++.+.+..+..+..+++|++|++++|.+++ ++...+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~------~l~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPS------SATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCCCCCC------CCcEEEe-CCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCE
Confidence 34556666665555544322 5666666 5555554444444555555555555555542 22222345555555
Q ss_pred eEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCC
Q 039327 110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 167 (315)
|++++|.+.+..+..+..+++|++|++++|.++ .+|...+..+++|++|++.+|.+.
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 555555555443444455555555555555554 344433333445555555555444
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.7e-14 Score=110.69 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=82.5
Q ss_pred CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327 125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204 (315)
Q Consensus 125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 204 (315)
+..+.+|++|++++|.++ .++. +....++|+.|++++|.+++. ..+..+++|++|++++|.+. .++...+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 344566667777766666 4433 333344777777777776643 45666777777777777776 555444345667
Q ss_pred ccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccccccc----ccccCCCCcEEEccCCccc
Q 039327 205 LEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIGEIPQ----SLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 205 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~ 264 (315)
|+.|++++|.+..... ..+..+++|+.|++++|.++ ..+. .+..+++|+.|++++|.+.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777777654322 25556677777777777766 3333 3566666777776666544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=4e-14 Score=108.67 Aligned_cols=129 Identities=17% Similarity=0.229 Sum_probs=104.2
Q ss_pred CCCceEEEeecCcCCCCCCccccCC-CCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCE
Q 039327 153 LPSLFSFNISTNALHGSIPSSFGNM-NFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQ 231 (315)
Q Consensus 153 ~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 231 (315)
+.+|+.|++.+|.++ .++. +..+ ++|+.|++++|.+. .+ .. +..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC-cc-cc-cccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 678999999999998 4554 4444 49999999999988 44 23 346889999999999998766666688999999
Q ss_pred EEcCCCcccccccc--ccccCCCCcEEEccCCccccccCCCCccccCCch----hhcccCCCCEEecccCccC
Q 039327 232 LQLEDNRFIGEIPQ--SLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPV----EFCQLYSLHILDISDNNIS 298 (315)
Q Consensus 232 L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~----~l~~~~~L~~L~l~~n~~~ 298 (315)
|++++|.++ .++. .+..+++|+.|++++|.+.. +|. .+..+++|+.|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-----------~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-----------KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-----------STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-----------cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999986 4554 78889999999999998873 444 4888999999999998764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4.3e-16 Score=122.08 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=48.3
Q ss_pred CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327 125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204 (315)
Q Consensus 125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 204 (315)
+..+++|++|++++|.++ .+| .+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+| .+. .+++
T Consensus 44 ~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~-~l~~ 116 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIE-KLVN 116 (198)
T ss_dssp HHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHH-HHHH
T ss_pred HhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccc-cCCC
Confidence 344444444444444444 233 2222 444455555444444 33433344444555555554444 232 111 2444
Q ss_pred ccEEEccCCCCCCccc-ccccCCCCCCEEEcCCCcccc
Q 039327 205 LEFLALSNNNLKGHMF-CRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 205 L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~ 241 (315)
|+.|++++|.+.+... ..+..+++|++|++++|.+.+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 4555555544443221 234445555555555555543
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=1.1e-12 Score=113.77 Aligned_cols=283 Identities=19% Similarity=0.132 Sum_probs=147.3
Q ss_pred CCccceEEeecCcccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEecc-----------------
Q 039327 2 LTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSS----------------- 64 (315)
Q Consensus 2 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------------- 64 (315)
|.+|+++.+.++ ++ .+...+|.+|++|+++++..+ ++.+..... ..+..|+.+.++.
T Consensus 70 c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF---~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 70 CRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTF---SGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp CTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTT---TTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhh---cccccchhhcccCceeeecceeeecccccc
Confidence 567777777643 33 344456777777777777543 333322211 1111333333200
Q ss_pred ---CCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcC
Q 039327 65 ---GYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNF 141 (315)
Q Consensus 65 ---~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 141 (315)
..........++.++.+|+.+.+.++.. .++...|..+++|+.+.+..+ +......++..+..|+.+.+..+..
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 0111111233456667777777754422 233344566667777666554 2222334455555555554433221
Q ss_pred C-C-------------------CCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccC
Q 039327 142 Q-G-------------------HIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201 (315)
Q Consensus 142 ~-~-------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 201 (315)
. + .+....+..+..++.+.+..+... .....|..+..++.+..... .++...|..
T Consensus 221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~ 295 (394)
T 4fs7_A 221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV----IVPEKTFYG 295 (394)
T ss_dssp EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS----EECTTTTTT
T ss_pred EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce----eeccccccc
Confidence 1 0 111111222333333333332211 22223344444444443332 233344556
Q ss_pred CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF 281 (315)
Q Consensus 202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l 281 (315)
+.+|+.+.+..+ +..+...+|..+.+|+.+++..+ ++.....++.+|.+|+.+.+..+ +..+. ..+|
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~----------~~aF 362 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG----------ANAF 362 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC----------TTTB
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh----------HHHh
Confidence 777777777654 44455667778888888888643 55445667778888888888655 44433 5678
Q ss_pred cccCCCCEEecccCccCCCCCCCcc-cccccee
Q 039327 282 CQLYSLHILDISDNNISGSLPSCFH-PLYIKKV 313 (315)
Q Consensus 282 ~~~~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l 313 (315)
.+|++|+.+++..+ +. .+...|. |++|+.+
T Consensus 363 ~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 363 QGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 89999999988765 22 3345666 8888765
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4.9e-16 Score=121.75 Aligned_cols=108 Identities=23% Similarity=0.222 Sum_probs=50.4
Q ss_pred hcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCc
Q 039327 102 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLR 181 (315)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 181 (315)
..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+++ +| .+..+++|+
T Consensus 45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 444455555555544443 23 4444455555555555544 44433332 3455555555555542 23 344455555
Q ss_pred EEEccCccccCcCch-hhccCCCcccEEEccCCCCC
Q 039327 182 ILDLSSNQLTGEIPE-RLAVGCVNLEFLALSNNNLK 216 (315)
Q Consensus 182 ~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~~~ 216 (315)
+|++++|.+. .++. ..+..+++|+.|++++|.+.
T Consensus 119 ~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccc
Confidence 5555555554 2222 12223555555555555543
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=6.5e-12 Score=108.88 Aligned_cols=263 Identities=12% Similarity=0.056 Sum_probs=172.2
Q ss_pred CCCccceEEeecCcccccCCCcccCCCcccceeeccccc------------ccc--ccccc---c-cCCCCccccEEEEe
Q 039327 1 HLTSIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNE------------IKA--EITES---H-SLTAPNFQLQSLLL 62 (315)
Q Consensus 1 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------~~~--~~~~~---~-~~~~~~~~L~~L~l 62 (315)
+|++|+.+++.++ ++ .+...++.+++.|+.+.+..+- ... .|..+ . .+...+.+|+.+.+
T Consensus 92 ~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l 169 (394)
T 4fs7_A 92 NCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSL 169 (394)
T ss_dssp TCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEec
Confidence 4788999999765 33 3444578888888887765431 110 11110 0 11223348899998
Q ss_pred ccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccceeEeecCC---------------------CcCcC
Q 039327 63 SSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDS---------------------IGGPF 121 (315)
Q Consensus 63 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~~~~~ 121 (315)
..+ +......++.++.+|+.+++..+ ++ .+....|..++.|+.+.+..+. +....
T Consensus 170 -~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~ 245 (394)
T 4fs7_A 170 -PDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELG 245 (394)
T ss_dssp -CTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEEC
T ss_pred -CCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecc
Confidence 543 33344556778888888888665 22 2233334555555555443321 11122
Q ss_pred cCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccC
Q 039327 122 RLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201 (315)
Q Consensus 122 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 201 (315)
..++..+..++.+.+..+.. .+....+..+..++.+......+. ...|..+.+|+.+.+..+ +. .++...|..
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~ 318 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFES 318 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTT
T ss_pred cccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcC
Confidence 34577788888888866533 344445555888888887665433 345788899999999765 54 677777878
Q ss_pred CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF 281 (315)
Q Consensus 202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l 281 (315)
+.+|+.+++..+ ++.+...+|..|.+|+.+.+..+ ++.....++.+|++|+.+++..+ +. .+..+|
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-----------~~~~~F 384 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-----------QYRYDF 384 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-----------GGGGGB
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-----------Ehhhee
Confidence 999999999754 66667788999999999999876 56566788999999999998754 33 234568
Q ss_pred cccCCCCEE
Q 039327 282 CQLYSLHIL 290 (315)
Q Consensus 282 ~~~~~L~~L 290 (315)
..|++|+.+
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 888887764
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=6.6e-13 Score=101.12 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=78.8
Q ss_pred ccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccc
Q 039327 29 RLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLE 108 (315)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 108 (315)
..++++++++.++.+|..+.. ++++|++ ++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~------~l~~L~L-~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPT------TTQVLYL-YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCccCCC------CCcEEEc-CCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCC
Confidence 356788888888887776433 7888888 888888766777778888888888888877 34444457778888
Q ss_pred eeEeecCCCcCcCcCCCcCCCCccEEEcccCcCC
Q 039327 109 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 109 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 142 (315)
+|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 8888888877655556777778888888777776
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.2e-12 Score=100.11 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=76.0
Q ss_pred cceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecccCChhhhhcccccce
Q 039327 30 LKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNGKFPNWLLENNAKLET 109 (315)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 109 (315)
-+.++++++.++.+|..+.. ++++|++ ++|.+.+..|..+.++++|+.|++++|.+++ +|..++..+++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~~------~L~~L~L-s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIPT------DKQRLWL-NNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCCCT------TCSEEEC-CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCcCC------CCcEEEe-CCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhE
Confidence 36778888888777776433 7888888 7777777667777778888888888887774 44444567777777
Q ss_pred eEeecCCCcCcCcCCCcCCCCccEEEcccCcCC
Q 039327 110 LFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 110 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 142 (315)
|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 877777777554555777777777777777765
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.5e-12 Score=97.95 Aligned_cols=107 Identities=25% Similarity=0.271 Sum_probs=80.3
Q ss_pred ccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEc
Q 039327 131 LRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLAL 210 (315)
Q Consensus 131 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 210 (315)
.++++++++.++ .+|..+ .+++++|++++|.+++..|..|..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 567777777776 676654 357788888888887666777778888888888888887 666666556788888888
Q ss_pred cCCCCCCcccccccCCCCCCEEEcCCCccccc
Q 039327 211 SNNNLKGHMFCRNFNLANLRQLQLEDNRFIGE 242 (315)
Q Consensus 211 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 242 (315)
++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888777666777788888888888877643
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=4e-12 Score=97.13 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=77.9
Q ss_pred cEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEcc
Q 039327 132 RFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALS 211 (315)
Q Consensus 132 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 211 (315)
+.++++++.+. .+|..+. ++|+.|++++|.+++..|..|..+++|++|++++|.+. .+|...+..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 56777777775 6776543 57788888888877666777777888888888888877 5666665567788888888
Q ss_pred CCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
+|.+.+..+..+..+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 888877666667778888888888887763
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=3.7e-14 Score=121.65 Aligned_cols=161 Identities=19% Similarity=0.139 Sum_probs=82.9
Q ss_pred ccccceeEeecCCCcCcCcCC----Cc-CCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccc----
Q 039327 104 NAKLETLFLINDSIGGPFRLP----IH-PHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSF---- 174 (315)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---- 174 (315)
.++|++|++++|.++...... +. ..++|++|++++|.+++.....+...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 345666666666554322111 11 124566666666655432223333334566666666666552211122
Q ss_pred -cCCCCCcEEEccCccccCc----CchhhccCCCcccEEEccCCCCCCc----ccccccCCCCCCEEEcCCCccccc---
Q 039327 175 -GNMNFLRILDLSSNQLTGE----IPERLAVGCVNLEFLALSNNNLKGH----MFCRNFNLANLRQLQLEDNRFIGE--- 242 (315)
Q Consensus 175 -~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~--- 242 (315)
...++|++|++++|.+.+. ++..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 2345666666666665421 111112 355666677766666532 233445556677777777766542
Q ss_pred -cccccccCCCCcEEEccCCcccc
Q 039327 243 -IPQSLSKCSSLEGLYLNNNSLSD 265 (315)
Q Consensus 243 -~~~~~~~~~~L~~L~l~~n~i~~ 265 (315)
+...+...++|++|++++|.|.+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 22334455667777777766553
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=2e-10 Score=99.51 Aligned_cols=280 Identities=11% Similarity=0.148 Sum_probs=146.1
Q ss_pred ccceEEeecCcccccCCCcccCCCcccceeeccccc---ccccccccccCCCCccccEEEEeccCCCCccccccccccCC
Q 039327 4 SIEELYLSNNHFQIPISLEPLFNHSRLKRLWAYNNE---IKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQH 80 (315)
Q Consensus 4 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 80 (315)
.|+.+.+.++ ++ .+...+|.+|++|+++.+..+. ++.+....+ ..+..|+.+.+ .. .+......++..+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF---~~c~~L~~i~~-~~-~~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAF---MFCSELTDIPI-LD-SVTEIDSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTT---TTCTTCCBCGG-GT-TCSEECTTTTTTCT
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhc---hhcccceeecc-CC-ccceehhhhhhhhc
Confidence 3667777544 32 3344567777777777776552 333333322 22235555555 22 23333344556666
Q ss_pred CCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEE
Q 039327 81 DLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFN 160 (315)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 160 (315)
+|+.+.+..... .+....|..+.+|+.+.+..+ +......+|.. .+|+.+.+..... .+....+..+..+....
T Consensus 138 ~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 138 ELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTTTTCTTCCEEE
T ss_pred ccccccccceee--eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchhhhccccceec
Confidence 666666654321 223333455666666655443 22122223322 2344444432211 11111111122222222
Q ss_pred eecC------------------------------------cCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327 161 ISTN------------------------------------ALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204 (315)
Q Consensus 161 l~~n------------------------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 204 (315)
.... .++.....+|..+..|+.+.+..+.. .+....|..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPA 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc--eecCcccccccc
Confidence 1111 11112234566777788777765432 345555667788
Q ss_pred ccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhccc
Q 039327 205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQL 284 (315)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~ 284 (315)
|+.+.+. +.+......+|..+.+|+.+.+..+ ++.....+|..|.+|+.+.+..+ +..|. ..+|.+|
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~----------~~aF~~C 356 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP----------ESAFSNC 356 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC----------GGGGTTC
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh----------HhHhhCC
Confidence 8888875 3455555667788888888888654 44455677778888888888643 44333 5788889
Q ss_pred CCCCEEecccCccCCCCCCCcc-ccccceec
Q 039327 285 YSLHILDISDNNISGSLPSCFH-PLYIKKVH 314 (315)
Q Consensus 285 ~~L~~L~l~~n~~~~~~~~~~~-~~~L~~l~ 314 (315)
++|+.+++.++.... ..+. +..|+.+.
T Consensus 357 ~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 357 TALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp TTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 999999988875431 2233 66666554
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.5e-13 Score=117.96 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=66.3
Q ss_pred ccEEEEeccCCCCcccccccccc-----CCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCC-----
Q 039327 56 QLQSLLLSSGYGDGVTFPKFLYH-----QHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPI----- 125 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----- 125 (315)
.++.|++ ++|.+++.....+.. .++|+.|++++|.+++.....+...+++|++|++++|.+++.....+
T Consensus 73 ~L~~L~L-s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 73 SLRQLNL-AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TCCEEEC-TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hCCEEEe-cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 6777777 666666543333322 25677777777766544333433445566677777666654322222
Q ss_pred cCCCCccEEEcccCcCCCC----CchhhhhcCCCceEEEeecCcCCC----CCCccccCCCCCcEEEccCcccc
Q 039327 126 HPHRRLRFLDVSNNNFQGH----IPVEIGDILPSLFSFNISTNALHG----SIPSSFGNMNFLRILDLSSNQLT 191 (315)
Q Consensus 126 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~~~ 191 (315)
...++|++|++++|.+++. ++..+.. .++|++|++++|.++. .++..+...++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 2244566666666555421 1111121 4455555555555441 11223334444555555555443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=7.2e-10 Score=96.00 Aligned_cols=267 Identities=14% Similarity=0.166 Sum_probs=167.7
Q ss_pred CCCccceEEeecCc---ccccCCCcccCCCcccceeecccccccccccccccCCCCccccEEEEeccCCCCccccccccc
Q 039327 1 HLTSIEELYLSNNH---FQIPISLEPLFNHSRLKRLWAYNNEIKAEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLY 77 (315)
Q Consensus 1 ~l~~L~~l~l~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 77 (315)
+|++|+.+.+.++. ++ .+...+|.++..|+.+.+..+ ++.+..... ..+.+|+.+.+ .. .+......++.
T Consensus 85 ~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF---~~c~~L~~i~l-p~-~~~~I~~~~F~ 157 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAF---HHCEELDTVTI-PE-GVTSVADGMFS 157 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTT---TTCTTCCEEEC-CT-TCCEECTTTTT
T ss_pred CCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhh---hhhcccccccc-cc-eeeeeccccee
Confidence 47889999998763 43 455568899999999888654 444444332 33448899998 43 33434455677
Q ss_pred cCCCCCeEEecCceecccCChhhhhcccccceeEeecCCCcCcCcCCCcCCCCccEEEcccCc-----------------
Q 039327 78 HQHDLEDVHLSHIKMNGKFPNWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN----------------- 140 (315)
Q Consensus 78 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----------------- 140 (315)
.+..|+.+.+.++- + .+....|. ..+|+.+.+..+- ......++..+..++........
T Consensus 158 ~c~~L~~i~~~~~~-~-~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T 4gt6_A 158 YCYSLHTVTLPDSV-T-AIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY 233 (394)
T ss_dssp TCTTCCEEECCTTC-C-EECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE
T ss_pred ccccccccccccee-e-Eecccccc-ccceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccc
Confidence 88888888886542 1 22222232 3456666665432 11223344444444443322111
Q ss_pred -------------------CCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccC
Q 039327 141 -------------------FQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVG 201 (315)
Q Consensus 141 -------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 201 (315)
+. .+....+..+..|+.+.+..+... .....|..++.|+.+.+.. .+. .++...|..
T Consensus 234 ~~~~~~~~~~~~~~~ip~~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~ 309 (394)
T 4gt6_A 234 ALIRYPSQREDPAFKIPNGVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAG 309 (394)
T ss_dssp EEEECCTTCCCSEEECCTTEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTT
T ss_pred cccccccccccceEEcCCcce-EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecC
Confidence 11 122333445778999988765433 4456788899999999964 455 677888888
Q ss_pred CCcccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhh
Q 039327 202 CVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEF 281 (315)
Q Consensus 202 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l 281 (315)
|.+|+.+.+..+ ++.+...+|..|.+|+++.+..+ ++..-..+|.+|.+|+.+++.++... ..++
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-------------~~~~ 374 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-------------WNAI 374 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-------------HHTC
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-------------hhhh
Confidence 999999999864 56666778999999999999654 55455788899999999999887533 2356
Q ss_pred cccCCCCEEecccCcc
Q 039327 282 CQLYSLHILDISDNNI 297 (315)
Q Consensus 282 ~~~~~L~~L~l~~n~~ 297 (315)
..+.+|+.+.+..+.+
T Consensus 375 ~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 375 STDSGLQNLPVAPGSI 390 (394)
T ss_dssp BCCCCC----------
T ss_pred hccCCCCEEEeCCCCE
Confidence 6777888888776544
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.14 E-value=1.7e-08 Score=86.92 Aligned_cols=138 Identities=18% Similarity=0.230 Sum_probs=86.9
Q ss_pred CCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEE
Q 039327 153 LPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQL 232 (315)
Q Consensus 153 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 232 (315)
+.+++.+.+..+ +.......+..+..|+.+.+..+ +. .+....|..+..++.+.+..+ +......++..+.+|+.+
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 445555555443 22233345666777777777654 33 455556666777887777643 444455667778888888
Q ss_pred EcCCCccccccccccccCCCCcEEEccCCccccccCCCCccccCCchhhcccCCCCEEecccCccCCCCCCCcc
Q 039327 233 QLEDNRFIGEIPQSLSKCSSLEGLYLNNNSLSDITMPKNHLEGPIPVEFCQLYSLHILDISDNNISGSLPSCFH 306 (315)
Q Consensus 233 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 306 (315)
.+.++.++.....++.+|.+|+.+.+..+ ++.|. ..+|.+|++|+.+.+..+ ++.....+|.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~----------~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ----------VYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC----------TTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEH----------HHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 88777776555677778888888887643 44333 567888888888877554 4433344555
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=1.2e-08 Score=87.74 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=71.9
Q ss_pred CcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCc
Q 039327 125 IHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVN 204 (315)
Q Consensus 125 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 204 (315)
+..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++......|..+.+++.+.+..+ +. .++...|..+.+
T Consensus 213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence 333444555554332 22 233333334566666666554 33233445666666776666543 33 455555556667
Q ss_pred ccEEEccCCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccC
Q 039327 205 LEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNN 260 (315)
Q Consensus 205 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 260 (315)
|+.+.+.++.+......+|..+.+|+.+.+..+ ++..-..++.+|.+|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777777666666555666666777777776533 3434445666666666666643
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=5.9e-10 Score=94.85 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=82.2
Q ss_pred cEEEcccC-cCCCCCchhhhhcCCCceEEEeec-CcCCCCCCccccCCCCCcEEEccCccccCcCchhhccCCCcccEEE
Q 039327 132 RFLDVSNN-NFQGHIPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMNFLRILDLSSNQLTGEIPERLAVGCVNLEFLA 209 (315)
Q Consensus 132 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 209 (315)
..++.+++ .++ .+|. +.. +.+|++|+|++ |.+++..+..|..+++|+.|++++|.+. .++...+..+++|+.|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence 34677777 787 7887 554 77899999986 8888666677888999999999999888 45555555788999999
Q ss_pred ccCCCCCCcccccccCCCCCCEEEcCCCcccc
Q 039327 210 LSNNNLKGHMFCRNFNLANLRQLQLEDNRFIG 241 (315)
Q Consensus 210 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 241 (315)
+++|.+.+..+..+..++ |+.|++.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999998877666666555 8999999888764
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=7.7e-10 Score=94.12 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=86.5
Q ss_pred EEEeecC-cCCCCCCccccCCCCCcEEEccC-ccccCcCchhhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327 158 SFNISTN-ALHGSIPSSFGNMNFLRILDLSS-NQLTGEIPERLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235 (315)
Q Consensus 158 ~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 235 (315)
.+++.++ .++ .+|. +..+++|++|++++ |.+. .++...+..+++|+.|++++|.+.+..+..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4678887 787 6787 99999999999996 8888 6666556679999999999999999888899999999999999
Q ss_pred CCccccccccccccCCCCcEEEccCCccc
Q 039327 236 DNRFIGEIPQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 236 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 264 (315)
+|.+++..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999865555555555 999999998876
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1e-09 Score=93.46 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=54.7
Q ss_pred ccEEEEeccCCCCcc-c-------cccccccCCCCCeEEecCceec---------ccCChhhhhcccccceeEeecCCCc
Q 039327 56 QLQSLLLSSGYGDGV-T-------FPKFLYHQHDLEDVHLSHIKMN---------GKFPNWLLENNAKLETLFLINDSIG 118 (315)
Q Consensus 56 ~L~~L~l~~~~~~~~-~-------~~~~l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~ 118 (315)
.++.|.+ ......+ . +..+..++++|+.|.+.+.... +.+. .++..+|+|+.|.++++.-.
T Consensus 108 ~v~~L~l-g~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 108 SLKQITI-GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GCSEEEE-CCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC
T ss_pred hcceEEE-cccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc
Confidence 5677777 4333321 1 1233445678888877554221 0122 33466778888888776311
Q ss_pred CcCcCCCcCCCCccEEEcccCcCCCCCchhhh-hcCCCceEEEee
Q 039327 119 GPFRLPIHPHRRLRFLDVSNNNFQGHIPVEIG-DILPSLFSFNIS 162 (315)
Q Consensus 119 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~ 162 (315)
..+. +. +++|++|++..+.++......+. ..+|+|+.|+|+
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 1222 32 66777777777665532222232 136777777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=2.2e-09 Score=91.32 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=75.5
Q ss_pred hcccccceeEeecCCCcC---------cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCCCceEEEeecCcCCCCCCc
Q 039327 102 ENNAKLETLFLINDSIGG---------PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILPSLFSFNISTNALHGSIPS 172 (315)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 172 (315)
..+++|+.|.+....... .+...+..+|+|+.|.++++.-. .++. + . .++|++|++..+.++.....
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHH
Confidence 456777777775532210 11222345566777776655211 2222 1 2 55666776666655421111
Q ss_pred cc--cCCCCCcEEEccCc--cccCc-----Cchhhc-cCCCcccEEEccCCCCCCcccccc---cCCCCCCEEEcCCCcc
Q 039327 173 SF--GNMNFLRILDLSSN--QLTGE-----IPERLA-VGCVNLEFLALSNNNLKGHMFCRN---FNLANLRQLQLEDNRF 239 (315)
Q Consensus 173 ~l--~~~~~L~~L~l~~n--~~~~~-----~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~ 239 (315)
.+ ..+|+|+.|+++.+ ...+. +...+. ..+++|+.|++.+|.+....+..+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 22 24666666666421 11101 111111 135666666666666543221111 1355666666666666
Q ss_pred cccc----ccccccCCCCcEEEccCCccc
Q 039327 240 IGEI----PQSLSKCSSLEGLYLNNNSLS 264 (315)
Q Consensus 240 ~~~~----~~~~~~~~~L~~L~l~~n~i~ 264 (315)
++.. +..+..+++|+.|++++|.|.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5432 222334566666666666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=8.3e-09 Score=79.40 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=82.5
Q ss_pred ccCCCcccceeecccc-cccc-----cccccccCCCCccccEEEEeccCCCCccc----cccccccCCCCCeEEecCcee
Q 039327 23 PLFNHSRLKRLWAYNN-EIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVT----FPKFLYHQHDLEDVHLSHIKM 92 (315)
Q Consensus 23 ~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~ 92 (315)
.+...+.|++|+|++| .+.. +...+.. +..|++|++ ++|.+.+. +...+...++|++|++++|.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~----~~~L~~L~L-s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT----NTYVKKFSI-VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT----CCSCCEEEC-TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh----CCCcCEEEC-cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 5567888999999998 8765 3333332 338999999 88888764 344555678899999999988
Q ss_pred cccCChhh---hhcccccceeEe--ecCCCcCc----CcCCCcCCCCccEEEcccCcCC
Q 039327 93 NGKFPNWL---LENNAKLETLFL--INDSIGGP----FRLPIHPHRRLRFLDVSNNNFQ 142 (315)
Q Consensus 93 ~~~~~~~~---~~~~~~L~~L~l--~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~ 142 (315)
.+.....+ +...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 75432222 356678999999 78888753 2344566788999999988764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=9.5e-09 Score=79.05 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=84.1
Q ss_pred ccccEEEEeccCC-CCccc----cccccccCCCCCeEEecCceecccCChhh---hhcccccceeEeecCCCcCc----C
Q 039327 54 NFQLQSLLLSSGY-GDGVT----FPKFLYHQHDLEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGGP----F 121 (315)
Q Consensus 54 ~~~L~~L~l~~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~ 121 (315)
+..|++|++ ++| .+.+. +...+...++|++|++++|.+.+.....+ +...++|++|++++|.+.+. +
T Consensus 35 ~~~L~~L~L-~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNL-NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEEC-TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEe-cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 338999999 888 88754 44566678999999999999875433222 35668999999999998763 3
Q ss_pred cCCCcCCCCccEEEc--ccCcCCCCCc----hhhhhcCCCceEEEeecCcCC
Q 039327 122 RLPIHPHRRLRFLDV--SNNNFQGHIP----VEIGDILPSLFSFNISTNALH 167 (315)
Q Consensus 122 ~~~l~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~ 167 (315)
..++...++|++|++ ++|.+.+... ..+.. .++|++|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-CCCcCEEeccCCCCC
Confidence 556788889999999 8888874322 22222 578999999999775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1.2e-07 Score=71.39 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=65.5
Q ss_pred ccccEEEEeccCCCCccccccccccCCCCCeEEecCce-ecccCChhhhhc----ccccceeEeecCC-CcCcCcCCCcC
Q 039327 54 NFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIK-MNGKFPNWLLEN----NAKLETLFLINDS-IGGPFRLPIHP 127 (315)
Q Consensus 54 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~l~~ 127 (315)
...|+.|++ +++.+++..-..+..+++|++|++++|. +++.....+ .. +++|++|++++|. +++.....+.+
T Consensus 60 ~~~L~~LDL-s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDA-TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCCEEEEEE-ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred CceEeEEeC-cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 347999999 7777887777778889999999999985 666555554 33 3579999999875 66655556778
Q ss_pred CCCccEEEcccCc
Q 039327 128 HRRLRFLDVSNNN 140 (315)
Q Consensus 128 ~~~L~~L~l~~~~ 140 (315)
+++|++|++++|.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 8889999998875
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=3.1e-07 Score=69.04 Aligned_cols=83 Identities=12% Similarity=0.030 Sum_probs=45.6
Q ss_pred ccceeecccccccc-cccccccCCCCccccEEEEeccCCCCccccccccccC----CCCCeEEecCce-ecccCChhhhh
Q 039327 29 RLKRLWAYNNEIKA-EITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQ----HDLEDVHLSHIK-MNGKFPNWLLE 102 (315)
Q Consensus 29 ~L~~L~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~ 102 (315)
.|++|++++|.+++ -...+.. .+ +|++|+++.+..+++..-..++.. ++|++|++++|. +++.....+ .
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~--~~--~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG--LQ--YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT--CS--CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCCccHHHHHHhcC--CC--CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 56677777666554 1122222 33 677777733334555544445443 357777776664 555444443 5
Q ss_pred cccccceeEeecCC
Q 039327 103 NNAKLETLFLINDS 116 (315)
Q Consensus 103 ~~~~L~~L~l~~~~ 116 (315)
.+++|++|++++|.
T Consensus 137 ~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 HFRNLKYLFLSDLP 150 (176)
T ss_dssp GCTTCCEEEEESCT
T ss_pred cCCCCCEEECCCCC
Confidence 56777777777664
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=1.4e-06 Score=70.49 Aligned_cols=62 Identities=37% Similarity=0.397 Sum_probs=35.0
Q ss_pred CCCcccEEEccCCCCCCc--ccccccCCCCCCEEEcCCCccccccccccccCC--CCcEEEccCCccc
Q 039327 201 GCVNLEFLALSNNNLKGH--MFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCS--SLEGLYLNNNSLS 264 (315)
Q Consensus 201 ~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~ 264 (315)
.++.|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+. ..+..+. +|++|++.+|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 356667777777766652 234444566666666666666543 2222232 5666666666544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=2.4e-06 Score=69.11 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=39.4
Q ss_pred hcccccceeEeecCCCcC--cCcCCCcCCCCccEEEcccCcCCCCCchhhhhcCC--CceEEEeecCcCCCCCC------
Q 039327 102 ENNAKLETLFLINDSIGG--PFRLPIHPHRRLRFLDVSNNNFQGHIPVEIGDILP--SLFSFNISTNALHGSIP------ 171 (315)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~------ 171 (315)
..+++|++|+|++|.+.+ .++..+..+++|+.|++++|.+.+ + ..+.. +. +|++|++.+|.+++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~-l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDK-IKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGG-GTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhh-cccCCcceEEccCCcCccccCcchhHH
Confidence 345556666666665554 222334455566666666665542 2 11111 22 56666666666554333
Q ss_pred -ccccCCCCCcEEE
Q 039327 172 -SSFGNMNFLRILD 184 (315)
Q Consensus 172 -~~l~~~~~L~~L~ 184 (315)
..+..+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 1244556666553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=7.2e-06 Score=62.81 Aligned_cols=110 Identities=12% Similarity=0.147 Sum_probs=66.6
Q ss_pred cccEEEEeccCC-CCccc----cccccccCCCCCeEEecCceecccCChhh---hhcccccceeEeecCCCcCc----Cc
Q 039327 55 FQLQSLLLSSGY-GDGVT----FPKFLYHQHDLEDVHLSHIKMNGKFPNWL---LENNAKLETLFLINDSIGGP----FR 122 (315)
Q Consensus 55 ~~L~~L~l~~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~----~~ 122 (315)
..|++|++ +++ .+.+. +.++++.-..|+.|++++|.+.+.....+ +..-+.|++|+|+.|.+.+. +.
T Consensus 41 ~~L~~L~L-~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 41 TDLKEVNI-NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp SSCCEEEC-TTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCccEEEC-CCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 37888888 653 66543 44556666778888888887765322222 24557788888888877652 23
Q ss_pred CCCcCCCCccEEEcccCc---CCCC----CchhhhhcCCCceEEEeecCcC
Q 039327 123 LPIHPHRRLRFLDVSNNN---FQGH----IPVEIGDILPSLFSFNISTNAL 166 (315)
Q Consensus 123 ~~l~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~~L~~L~l~~n~~ 166 (315)
.++...+.|++|+++++. +... +...+.. -+.|++|++..+.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCCc
Confidence 456666778888887542 2211 1122222 45788888876543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=1.1e-05 Score=61.71 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=77.9
Q ss_pred ccCCCcccceeecccc-cccc-----cccccccCCCCccccEEEEeccCCCCccccc----cccccCCCCCeEEecCcee
Q 039327 23 PLFNHSRLKRLWAYNN-EIKA-----EITESHSLTAPNFQLQSLLLSSGYGDGVTFP----KFLYHQHDLEDVHLSHIKM 92 (315)
Q Consensus 23 ~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~ 92 (315)
.+.+-+.|++|+|+++ ++.. +...+ -.++.|+.|++ ++|.+.+... +.+..-+.|++|++++|.+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL----~~N~~L~~L~L-~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAA----CNSKHIEKFSL-ANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHH----TTCSCCCEEEC-TTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHH----hhCCCcCEEEc-cCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3455678999999885 7764 33333 33558999999 8888887644 4445678899999999998
Q ss_pred cccCChhh---hhcccccceeEeecC---CCcC----cCcCCCcCCCCccEEEcccCcC
Q 039327 93 NGKFPNWL---LENNAKLETLFLIND---SIGG----PFRLPIHPHRRLRFLDVSNNNF 141 (315)
Q Consensus 93 ~~~~~~~~---~~~~~~L~~L~l~~~---~~~~----~~~~~l~~~~~L~~L~l~~~~~ 141 (315)
.+.....+ +..-+.|++|+++++ .+.. .+..++..-+.|+.|+++.+..
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 76443333 244467999999865 3332 2334566678899999876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0015 Score=46.46 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=45.1
Q ss_pred ceeeccccccc--ccccccccCCCCccccEEEEeccCCCCccccccccccCCCCCeEEecCceecc
Q 039327 31 KRLWAYNNEIK--AEITESHSLTAPNFQLQSLLLSSGYGDGVTFPKFLYHQHDLEDVHLSHIKMNG 94 (315)
Q Consensus 31 ~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 94 (315)
..++.++++++ .+|..+.. ++++|+| ++|.++..-+..+..+++|+.|++.+|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~------~l~~L~L-s~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPV------DTTELVL-TGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCT------TCSEEEC-TTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCCc------CCCEEEC-CCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 46788888887 78877544 7899999 8888886666677888889999999888754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.24 E-value=0.011 Score=42.05 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=17.8
Q ss_pred cccEEEccCCCCCCcccccccCCCCCCEEEcCCCcc
Q 039327 204 NLEFLALSNNNLKGHMFCRNFNLANLRQLQLEDNRF 239 (315)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 239 (315)
+++.|++++|.++...+..|..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555555444444444455555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.50 E-value=9.6 Score=25.12 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=15.7
Q ss_pred hhccCCCcccEEEccCCCCCCcccccccCCCCCCEEEcC
Q 039327 197 RLAVGCVNLEFLALSNNNLKGHMFCRNFNLANLRQLQLE 235 (315)
Q Consensus 197 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 235 (315)
..|..|..|+.+.+..+ ++.+...+|..|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33334444444444432 222333344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.51 E-value=15 Score=24.11 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=34.7
Q ss_pred CCCCCCcccccccCCCCCCEEEcCCCccccccccccccCCCCcEEEccCC
Q 039327 212 NNNLKGHMFCRNFNLANLRQLQLEDNRFIGEIPQSLSKCSSLEGLYLNNN 261 (315)
Q Consensus 212 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 261 (315)
+..++.+...+|..|..|+.+.+-.+ ++..-..+|..|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455566678888888888888654 34355677788888888887654
Done!