Citrus Sinensis ID: 039329

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MRINSFWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLVTRHHHHHHHHHHHHHRVKCDKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFSENGDRTFTRTY
ccccccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHcccccccccccccEEEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEcccccccccccccEEEEEEcccEEEEccEEEEcccccccccccccEEEEEEcccEEEEEEEEEEEccccEEcccccEEEEccEEEEEcEEEEcccEEEEEccEEEEEEcccccccccEEEEEcccccccccEEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEccccccccccccccccccccccccEEcc
ccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEccccccccccccccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEEEcccccccccEEEEEccccccccccEEEEEEcEEEccccccccccHHHHccEEEEEccccccccccccccccccccccEEEEEEHcccccccccccccccccEccHHHHHHccHHHHHccccccccccccccccccccccccEEEc
MRINSFWVFALAVSLLSIIISLFitipppssttttiisLTQIPILIKRIIVEDLLSLVtrhhhhhhhhhhhhhrvkcdktnwRLRIISHYKWLVYHYRVSLILTVdlhgcanfssvqkavdavpsfspsktliiidsATYREKVVVNANKTNLIFLGRGYLNTIIEwndtanstggtaysSSVAVFASNFTAYNisfmntapwpspgdvggQAVALRIggdqaafyncgfygaqdtlyddhgrhyfkdcfiqGSIDFIFGNARSLyedctinsiaeqvpdgmvsgsitaqgrqsmseetgfsFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADvvssdgwndwqdpsrdltvffgeydclgpganySYRASFGKQLMQYeaapymnisyidgdewlhHHQDILFgfsengdrtftrty
MRINSFWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLVTRHHHHhhhhhhhhhrvkcdktNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIaeqvpdgmvSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDIlfgfsengdrtftrty
MRINSFWVFALAVsllsiiislfitipppssttttiisltqipiliKRIIVEDLLSLVTRhhhhhhhhhhhhhRVKCDKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFSENGDRTFTRTY
***NSFWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLV******************CDKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSS****************LIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQV********************TGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFS***********
**INSFWVFALAVSLLSIIISLFITIPPP*******************IIVEDLLSLV**********************************LVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFSE**********
MRINSFWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLVT******************DKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGS***********ETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFSENGDRTFTRTY
*RINSFWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLVTRHHH*****************NWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFSENGDRTFTRTY
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRINSFWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLVTRHHHHHHHHHHHHHRVKCDKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHHQDILFGFSENGDRTFTRTY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q9ZQA3407 Probable pectinesterase 1 yes no 0.907 0.936 0.604 1e-125
Q9ZQA4333 Putative pectinesterase 1 no no 0.742 0.936 0.559 1e-100
O23038393 Probable pectinesterase 8 no no 0.707 0.755 0.581 2e-99
Q8VYZ3383 Probable pectinesterase 5 no no 0.690 0.757 0.472 6e-79
Q8LPF3362 Probable pectinesterase 6 no no 0.692 0.803 0.483 3e-73
Q9FM79380 Pectinesterase QRT1 OS=Ar no no 0.7 0.773 0.436 5e-64
Q9LY17361 Probable pectinesterase 5 no no 0.688 0.800 0.402 1e-61
Q9LY18361 Probable pectinesterase 4 no no 0.688 0.800 0.392 1e-59
Q9SIJ9352 Putative pectinesterase 1 no no 0.678 0.809 0.382 6e-59
Q9LSP1344 Probable pectinesterase 6 no no 0.692 0.845 0.378 3e-56
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function desciption
 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/394 (60%), Positives = 287/394 (72%), Gaps = 13/394 (3%)

Query: 8   VFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSLVTRHHHHHHH 67
           V    ++LLSII++L+ TI  PSS + + I+ T I  L K             HHHHHHH
Sbjct: 6   VLTTLIALLSIILALY-TIQLPSSRSLSSIA-TTIGALAKYSTFFGHKHHHHHHHHHHHH 63

Query: 68  HHHHHHRVKC-DKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSF 126
           H+HHH  +KC +K   RLR         + Y+ SL+LTVDLHGC NFS+VQ A+D VP  
Sbjct: 64  HYHHHEPIKCCEKWTSRLR---------HQYKTSLVLTVDLHGCGNFSNVQSAIDVVPDL 114

Query: 127 SPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVF 186
           S SKTLII++S +YREKV VN NKTNL+  GRGY NT IEWNDTA S G TA S S  VF
Sbjct: 115 SSSKTLIIVNSGSYREKVTVNENKTNLVIQGRGYQNTSIEWNDTAKSAGNTADSFSFVVF 174

Query: 187 ASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYF 246
           A+NFTAYNISF N AP P PG+   QAVALRI GDQAAFY CGFYGAQDTL DD GRH+F
Sbjct: 175 AANFTAYNISFKNNAPEPDPGEADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFF 234

Query: 247 KDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNC 306
           K+CFIQGSIDFIFGN RSLY+DCTINSIA+    G V+GSITAQGRQS  E++GFSFVNC
Sbjct: 235 KECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSG-VTGSITAQGRQSEDEQSGFSFVNC 293

Query: 307 QIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGA 366
           +IDG+G + LGRAWG  A VVFS TYM+ +++ +GWN+W D +++ TV FGE+ C GPGA
Sbjct: 294 KIDGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGA 353

Query: 367 NYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHH 400
           +Y  R  FGKQL   EA+ ++++S+IDGDEWL H
Sbjct: 354 DYKERVLFGKQLTDSEASSFIDVSFIDGDEWLRH 387
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY17|PME50_ARATH Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
297740009 893 unnamed protein product [Vitis vinifera] 0.928 0.436 0.656 1e-148
356570790410 PREDICTED: probable pectinesterase 15-li 0.909 0.931 0.670 1e-144
224068885337 predicted protein [Populus trichocarpa] 0.764 0.952 0.75 1e-143
449440435409 PREDICTED: probable pectinesterase 15-li 0.921 0.946 0.603 1e-139
357510877398 Pectinesterase [Medicago truncatula] gi| 0.935 0.987 0.618 1e-137
359481942402 PREDICTED: probable pectinesterase 15-li 0.869 0.907 0.606 1e-133
255556784394 Pectinesterase PPE8B precursor, putative 0.826 0.880 0.635 1e-131
297823481404 pectinesterase family protein [Arabidops 0.902 0.938 0.615 1e-124
15228023407 putative pectinesterase 15 [Arabidopsis 0.907 0.936 0.604 1e-123
27754550407 putative pectinesterase family protein [ 0.907 0.936 0.601 1e-122
>gi|297740009|emb|CBI30191.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/407 (65%), Positives = 310/407 (76%), Gaps = 17/407 (4%)

Query: 1   MRINS---FWVFALAVSLLSIIISLFITIPPPSSTTTTIISLTQIPILIKRIIVEDLLSL 57
           MRI +   FW  A  ++LLSI ++LF      ++ T   + L  +  ++K+  VED LSL
Sbjct: 1   MRIKTTLFFWSSAFLIALLSITVALFTISSSTATITQGDLELAFLRRIVKQSGVEDFLSL 60

Query: 58  VTRHHHHHHHHHH------HHHRVKCDKTNWRLRIISHYKWLVYHYRVSLILTVDLHGCA 111
           + +        HH          V CD   W+ +IIS Y        VSLILTVDL GCA
Sbjct: 61  LNQATDRASQRHHHHHHHHRKPEVICDDAKWKSKIISSYN-------VSLILTVDLKGCA 113

Query: 112 NFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTA 171
           NFSSVQKAVDAVP  S S+TLII+DS  YREKVVV A+KTNLIF G+GYLNT I WNDTA
Sbjct: 114 NFSSVQKAVDAVPDSSLSRTLIIMDSGIYREKVVVGASKTNLIFQGQGYLNTAIAWNDTA 173

Query: 172 NSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFY 231
           NSTGGT+YS SVA+FA NFTAYNISF NTAP  SPGDVGGQAVALR+  DQAAFY CGFY
Sbjct: 174 NSTGGTSYSYSVAIFAPNFTAYNISFQNTAPPASPGDVGGQAVALRVANDQAAFYGCGFY 233

Query: 232 GAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGMVSGSITAQG 291
           GAQDTL+DD GRHYF++CFIQGSIDFIFGNARSLYE+CTINS A++V  G +SG+ITAQG
Sbjct: 234 GAQDTLHDDRGRHYFRECFIQGSIDFIFGNARSLYEECTINSTAKEVSSG-ISGAITAQG 292

Query: 292 RQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMADVVSSDGWNDWQDPSRD 351
           RQS+ E+TGFSFV C I GTGRVWLGRAWG  A VVFS TYMAD+V+SDGWNDW+DPSRD
Sbjct: 293 RQSVDEKTGFSFVKCVIGGTGRVWLGRAWGAYATVVFSNTYMADLVASDGWNDWRDPSRD 352

Query: 352 LTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWL 398
            TVFFGEYDC GPG+N +YR S+ KQLMQ EAAPY+++SYIDG+EWL
Sbjct: 353 QTVFFGEYDCKGPGSNNTYRVSYAKQLMQSEAAPYLDVSYIDGNEWL 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356570790|ref|XP_003553567.1| PREDICTED: probable pectinesterase 15-like [Glycine max] Back     alignment and taxonomy information
>gi|224068885|ref|XP_002326223.1| predicted protein [Populus trichocarpa] gi|222833416|gb|EEE71893.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440435|ref|XP_004137990.1| PREDICTED: probable pectinesterase 15-like [Cucumis sativus] gi|449529816|ref|XP_004171894.1| PREDICTED: probable pectinesterase 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357510877|ref|XP_003625727.1| Pectinesterase [Medicago truncatula] gi|355500742|gb|AES81945.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359481942|ref|XP_002264941.2| PREDICTED: probable pectinesterase 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556784|ref|XP_002519425.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] gi|223541288|gb|EEF42839.1| Pectinesterase PPE8B precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297823481|ref|XP_002879623.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297325462|gb|EFH55882.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15228023|ref|NP_181209.1| putative pectinesterase 15 [Arabidopsis thaliana] gi|75315660|sp|Q9ZQA3.1|PME15_ARATH RecName: Full=Probable pectinesterase 15; Short=PE 15; AltName: Full=Pectin methylesterase 15; Short=AtPME15; Flags: Precursor gi|4415916|gb|AAD20147.1| putative pectinesterase [Arabidopsis thaliana] gi|330254195|gb|AEC09289.1| putative pectinesterase 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|27754550|gb|AAO22722.1| putative pectinesterase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.735 0.759 0.661 2.5e-113
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.702 0.885 0.591 2.3e-94
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.704 0.753 0.583 1.6e-93
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.688 0.754 0.473 2.5e-74
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.690 0.801 0.488 5.3e-73
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.697 0.771 0.441 1.1e-64
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.688 0.800 0.402 1.7e-59
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.688 0.800 0.392 8.4e-58
TAIR|locus:2049344352 PE11 "pectinesterase 11" [Arab 0.680 0.812 0.388 5.9e-57
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.688 0.800 0.385 3.4e-54
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 207/313 (66%), Positives = 245/313 (78%)

Query:    91 KW---LVYHYRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVN 147
             KW   L + Y+ SL+LTVDLHGC NFS+VQ A+D VP  S SKTLII++S +YREKV VN
Sbjct:    76 KWTSRLRHQYKTSLVLTVDLHGCGNFSNVQSAIDVVPDLSSSKTLIIVNSGSYREKVTVN 135

Query:   148 ANKTNLIFLGRGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPG 207
              NKTNL+  GRGY NT IEWNDTA S G TA S S  VFA+NFTAYNISF N AP P PG
Sbjct:   136 ENKTNLVIQGRGYQNTSIEWNDTAKSAGNTADSFSFVVFAANFTAYNISFKNNAPEPDPG 195

Query:   208 DVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYE 267
             +   QAVALRI GDQAAFY CGFYGAQDTL DD GRH+FK+CFIQGSIDFIFGN RSLY+
Sbjct:   196 EADAQAVALRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQ 255

Query:   268 DCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVV 327
             DCTINSIA+    G V+GSITAQGRQS  E++GFSFVNC+IDG+G + LGRAWG  A VV
Sbjct:   256 DCTINSIAKGNTSG-VTGSITAQGRQSEDEQSGFSFVNCKIDGSGEILLGRAWGAYATVV 314

Query:   328 FSKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYM 387
             FS TYM+ +++ +GWN+W D +++ TV FGE+ C GPGA+Y  R  FGKQL   EA+ ++
Sbjct:   315 FSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVLFGKQLTDSEASSFI 374

Query:   388 NISYIDGDEWLHH 400
             ++S+IDGDEWL H
Sbjct:   375 DVSFIDGDEWLRH 387
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049344 PE11 "pectinesterase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZQA3PME15_ARATH3, ., 1, ., 1, ., 1, 10.60400.90710.9361yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000569001
RecName- Full=Pectinesterase; EC=3.1.1.11; (427 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-159
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-128
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-107
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-106
PLN02432293 PLN02432, PLN02432, putative pectinesterase 8e-96
PLN02671359 PLN02671, PLN02671, pectinesterase 3e-95
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-84
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 4e-83
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-76
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 4e-68
PLN02176340 PLN02176, PLN02176, putative pectinesterase 8e-66
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 2e-54
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 4e-54
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 3e-52
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-51
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 2e-51
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-51
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-50
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-50
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 2e-50
PLN02217670 PLN02217, PLN02217, probable pectinesterase/pectin 8e-50
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 2e-49
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 5e-49
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 7e-47
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 7e-45
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 9e-45
PLN02197588 PLN02197, PLN02197, pectinesterase 8e-44
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 3e-42
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 5e-42
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 3e-40
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 7e-40
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-36
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 6e-33
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 3e-18
PRK09545311 PRK09545, znuA, high-affinity zinc transporter per 0.001
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 0.004
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information 
 Score =  453 bits (1166), Expect = e-159
 Identities = 196/363 (53%), Positives = 249/363 (68%), Gaps = 2/363 (0%)

Query: 38  SLTQIPILIKRIIVEDLLSLVTRHHHHHHHHHHHHHRVKCDKTNWRLRIISHYKWLVYHY 97
            L    I +  I     ++    H  HHH HHHHHH+   D     +       +     
Sbjct: 12  PLLGHLIELSLISFSSKIATSYPHSIHHHSHHHHHHKHPDDGKKVSICDDFPPDFPPPDT 71

Query: 98  RVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLG 157
             + IL VD +GC NF++VQ AVDAV +FS  + +I I+S  Y EKV V   K N+ F G
Sbjct: 72  NTTSILCVDPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEKVTVPKTKPNITFQG 131

Query: 158 RGYLNTIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALR 217
           +G+ +T I WNDTA S  GT YS+SV VFASNF A NISFMN AP P PGDVG QAVA+R
Sbjct: 132 QGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIR 191

Query: 218 IGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQ 277
           I GDQAAF+ CGF+GAQDTL+DD GRHYFKDC+IQGSIDFIFG+ARSLYE+C + S+A  
Sbjct: 192 IAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGDARSLYENCRLISMANP 251

Query: 278 VPDG--MVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMAD 335
           VP G   ++G++TA GR S  E TGFSFVNC I GTGR+WLGRAW   + VVF+ T M D
Sbjct: 252 VPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTGRIWLGRAWRPYSRVVFAYTSMTD 311

Query: 336 VVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGD 395
           +++ +GWND+ DP+RD T+F+GEY+C GPGAN S RA + ++L   + +P++N S+IDGD
Sbjct: 312 IIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANMSMRAPYVQKLNDTQVSPFLNTSFIDGD 371

Query: 396 EWL 398
           +WL
Sbjct: 372 QWL 374

Length = 379
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02773317 pectinesterase 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02432293 putative pectinesterase 100.0
PLN02217670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02197588 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.35
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.45
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.24
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.14
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.11
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.2
PLN02682369 pectinesterase family protein 96.5
PLN02773317 pectinesterase 96.48
KOG1777 625 consensus Putative Zn-finger protein [General func 96.36
PLN02480343 Probable pectinesterase 96.33
PLN02793443 Probable polygalacturonase 96.31
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.05
PLN02671359 pectinesterase 95.97
PRK10531422 acyl-CoA thioesterase; Provisional 95.9
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 95.83
PLN02188404 polygalacturonase/glycoside hydrolase family prote 95.81
PLN03010409 polygalacturonase 95.7
PLN02304379 probable pectinesterase 95.58
PLN02432293 putative pectinesterase 95.52
PLN02218431 polygalacturonase ADPG 95.43
PLN02634359 probable pectinesterase 95.4
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.38
PLN02497331 probable pectinesterase 95.37
PLN02665366 pectinesterase family protein 95.31
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 95.23
PLN03003456 Probable polygalacturonase At3g15720 95.0
PLN02176340 putative pectinesterase 94.95
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.8
smart00656190 Amb_all Amb_all domain. 94.7
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.61
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.52
PLN02197588 pectinesterase 94.51
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.42
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.4
PLN02217670 probable pectinesterase/pectinesterase inhibitor 94.36
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.32
PLN02916502 pectinesterase family protein 94.28
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 94.22
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.2
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.2
PLN02468565 putative pectinesterase/pectinesterase inhibitor 94.1
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.02
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.99
PLN02301548 pectinesterase/pectinesterase inhibitor 93.76
PLN02314586 pectinesterase 93.73
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.58
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.54
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.43
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.39
PLN02155394 polygalacturonase 92.91
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.31
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 91.23
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 89.48
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 88.61
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 87.5
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 86.99
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 84.86
>PLN02304 probable pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=3e-96  Score=741.83  Aligned_cols=305  Identities=60%  Similarity=1.068  Sum_probs=285.8

Q ss_pred             cCceeEEEEcCCCCCCCccHHHHHhhCcCCCCCeEEEEEeCCceeeeEEecCcccceEEeecCccCeEEEeCCCccCCCC
Q 039329           97 YRVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGG  176 (420)
Q Consensus        97 ~~~~~~l~V~~dG~Gdf~TIQaAIdaap~~~~~~~~I~Ik~G~Y~E~V~I~~~K~~ItL~Geg~~~tvI~~~~~a~~~~G  176 (420)
                      .+...+++|++||+|||+|||+|||++|+++++|++|+|+||+|+|+|+|+++|++|+|+|+|.++|+|+|++.+....|
T Consensus        71 ~~~~~~i~Va~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~g  150 (379)
T PLN02304         71 TNTTSILCVDPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANG  150 (379)
T ss_pred             hccceEEEECCCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCC
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999998766678


Q ss_pred             cccceeEEEEcCCeEEEceeEeeCCCCCCCCCCCCceEEEEEcCCceEEEeeEEeeccceEEeCcccEEEeccEEecceE
Q 039329          177 TAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSID  256 (420)
Q Consensus       177 t~~sat~~V~a~~f~a~nItf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~nC~f~G~QDTL~~~~gr~yf~~C~IeG~VD  256 (420)
                      |+.|+||.|.+++|+++||||+|+++.+.+|..++|||||++.|||++||||+|+|||||||++.|||||++|||||+||
T Consensus       151 T~~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VD  230 (379)
T PLN02304        151 TFYSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSID  230 (379)
T ss_pred             ccceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEccccc
Confidence            99999999999999999999999997666677789999999999999999999999999999999999999999999999


Q ss_pred             EEeccceEEEeeeEEEEecccCCCC--CceeEEEcCCCCCCCCCeeEEEEccEEeecceEEecccccccceEEEeccccC
Q 039329          257 FIFGNARSLYEDCTINSIAEQVPDG--MVSGSITAQGRQSMSEETGFSFVNCQIDGTGRVWLGRAWGVCAAVVFSKTYMA  334 (420)
Q Consensus       257 FIfG~g~a~Fe~C~I~s~~~~~~~g--~~~g~ITA~~r~~~~~~~GfVF~nC~i~~~g~~yLGRPW~~~srvvf~nt~m~  334 (420)
                      ||||+|+|+||+|+|+++.++...+  ...|+||||+|.++.+++||||.||+|++++++||||||++||||||++|+|+
T Consensus       231 FIFG~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~g~vyLGRPW~pysrvVf~~t~m~  310 (379)
T PLN02304        231 FIFGDARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTGRIWLGRAWRPYSRVVFAYTSMT  310 (379)
T ss_pred             EEeccceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccCcceeecCCCCCcceEEEEecccC
Confidence            9999999999999999975431111  13699999999888899999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCCceeEEEeecccCCCCCCcccccccccCCHHhHcCccccccccCCCCCccc
Q 039329          335 DVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGKQLMQYEAAPYMNISYIDGDEWLHHH  401 (420)
Q Consensus       335 ~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~s~Rv~w~~~Lt~~eA~~yt~~~fi~g~~W~p~~  401 (420)
                      ++|.|+||.+|+.+.++++++|+||+|+||||++++||+|+++|+++||++|+..+||+|++|++++
T Consensus       311 ~~I~p~GW~~w~~~~~~~tv~yaEY~ntGpGA~~s~Rv~Ws~~Ls~~eA~~f~~~~fi~g~~Wl~~~  377 (379)
T PLN02304        311 DIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANMSMRAPYVQKLNDTQVSPFLNTSFIDGDQWLQPY  377 (379)
T ss_pred             CEEcCCccCccCCCCCCCceEEEEEcccCCCCCcccCccccccCCHHHHHhhhhhhccCCCcccccc
Confidence            9999999999998777889999999999999999999999999999999999999999999999854

>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-39
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 3e-34
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-15
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 3e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-14
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-14
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 153/309 (49%), Gaps = 20/309 (6%)
Query: 103 LTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLN 162
           + V   G  ++ +V +AV A P  S ++ +I I +  YRE V V   K N++FLG G  +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 163 TIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQ 222
           TII  +        T  S++VA   + F A +I+F NTA     G    QAVALR+G D 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDL 123
Query: 223 AAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGM 282
           +AFY C     QD+LY    R +F +CFI G++DFIFGNA  + +DC I++   + P   
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHA---RRPGSG 180
Query: 283 VSGSITAQGRQSMSEETGFSFVNCQIDGTGRV---------WLGRAWGVCAAVVFSKTYM 333
               +TAQGR   ++ TG      +I  T  +         +LGR W   +  V  ++ +
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240
Query: 334 ADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRAS---FGKQLMQYEAAPYMNIS 390
            +V++  GW  W       T+++GEY   G GA  S R +   F       EA  +   S
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300
Query: 391 YIDGDEWLH 399
           +I G  WL 
Sbjct: 301 FIAGGSWLK 309
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-124
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-123
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-106
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-102
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-86
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  362 bits (932), Expect = e-124
 Identities = 104/308 (33%), Positives = 151/308 (49%), Gaps = 20/308 (6%)

Query: 103 LTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLN 162
           + V   G  ++ +V +AV A P  S ++ +I I +  YRE V V   K N++FLG G  +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 163 TIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQ 222
           TII  +        T  S++VA   + F A +I+F NTA     G    QAVALR+G D 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDL 123

Query: 223 AAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGM 282
           +AFY C     QD+LY    R +F +CFI G++DFIFGNA  + +DC I++     P   
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR---PGSG 180

Query: 283 VSGSITAQGRQSMSEETGFSFVNCQIDGTG---------RVWLGRAWGVCAAVVFSKTYM 333
               +TAQGR   ++ TG      +I  T            +LGR W   +  V  ++ +
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 334 ADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRAS---FGKQLMQYEAAPYMNIS 390
            +V++  GW  W       T+++GEY   G GA  S R +   F       EA  +   S
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 391 YIDGDEWL 398
           +I G  WL
Sbjct: 301 FIAGGSWL 308
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.64
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.33
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.68
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.15
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.71
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.48
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.26
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.2
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.18
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.09
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.04
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.91
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.9
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.87
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 96.87
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.86
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 96.81
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.34
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.27
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.13
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.03
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.95
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.93
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.67
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.64
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.62
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 95.59
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.97
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 94.86
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 94.82
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.15
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 93.69
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 92.42
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 91.58
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 90.8
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 90.79
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 90.33
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 83.26
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 80.52
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
Probab=100.00  E-value=3.2e-87  Score=667.72  Aligned_cols=296  Identities=35%  Similarity=0.603  Sum_probs=275.2

Q ss_pred             ceeEEEEcCCCCCCCccHHHHHhhCcCCCCCeEEEEEeCCceeeeEEecCcccceEEeecCccCeEEEeCCCccCCCCcc
Q 039329           99 VSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGTA  178 (420)
Q Consensus        99 ~~~~l~V~~dG~Gdf~TIQaAIdaap~~~~~~~~I~Ik~G~Y~E~V~I~~~K~~ItL~Geg~~~tvI~~~~~a~~~~Gt~  178 (420)
                      .+.+++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++.++|+|+++.......+|.
T Consensus         5 ~~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~   84 (319)
T 1gq8_A            5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTF   84 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTG
T ss_pred             ccceEEECCCCCCCccCHHHHHHhccccCCceEEEEEcCCeEeeeeeccCCCccEEEEEcCCCccEEEecccccCCCCcc
Confidence            56789999999999999999999999999999999999999999999999899999999999999999988765556788


Q ss_pred             cceeEEEEcCCeEEEceeEeeCCCCCCCCCCCCceEEEEEcCCceEEEeeEEeeccceEEeCcccEEEeccEEecceEEE
Q 039329          179 YSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFI  258 (420)
Q Consensus       179 ~sat~~V~a~~f~a~nItf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~nC~f~G~QDTL~~~~gr~yf~~C~IeG~VDFI  258 (420)
                      .++||.|.+++|+++||+|+|+++     ..++||+||++.+|+++|+||+|+|+|||||++.+||||++|+|+|+||||
T Consensus        85 ~satv~v~a~~f~~~nlt~~Nt~g-----~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFI  159 (319)
T 1gq8_A           85 NSATVAAVGAGFLARDITFQNTAG-----AAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFI  159 (319)
T ss_dssp             GGCSEEECSTTCEEEEEEEEECCC-----GGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCE
T ss_pred             ceEEEEEECCCEEEEEeEeEccCC-----CcCCceEEEEecCCcEEEEEeEECccceeeeecCccEEEEecEEEeeeeEE
Confidence            999999999999999999999984     456899999999999999999999999999999999999999999999999


Q ss_pred             eccceEEEeeeEEEEecccCCCCCceeEEEcCCCCCCCCCeeEEEEccEEeecc---------eEEecccccccceEEEe
Q 039329          259 FGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTG---------RVWLGRAWGVCAAVVFS  329 (420)
Q Consensus       259 fG~g~a~Fe~C~I~s~~~~~~~g~~~g~ITA~~r~~~~~~~GfVF~nC~i~~~g---------~~yLGRPW~~~srvvf~  329 (420)
                      ||+|+++||+|+|+++...  .+ ..++||||+|.++.+++||||+||+|++++         ++||||||++|+||||+
T Consensus       160 fG~~~a~f~~c~i~~~~~~--~~-~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~  236 (319)
T 1gq8_A          160 FGNAAVVLQDCDIHARRPG--SG-QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM  236 (319)
T ss_dssp             EESCEEEEESCEEEECCCS--TT-CCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEE
T ss_pred             ecCCcEEEEeeEEEEecCC--CC-CceEEEeCCCCCCCCCceEEEECCEEecCCCccccccceeEEecccCCCcceEEEE
Confidence            9999999999999986532  22 468999999998999999999999999864         79999999999999999


Q ss_pred             ccccCcccCCCCCCCCCCCCCCceeEEEeecccCCCCCCcccccccc--cCC-HHhHcCccccccccCCCCCcccc
Q 039329          330 KTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFGK--QLM-QYEAAPYMNISYIDGDEWLHHHQ  402 (420)
Q Consensus       330 nt~m~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~s~Rv~w~~--~Lt-~~eA~~yt~~~fi~g~~W~p~~~  402 (420)
                      +|+|+++|.|+||.+|+.+.+.++++|+||+|+||||++++||+|++  +|+ ++||++|+..+||+|++|+|...
T Consensus       237 ~t~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~  312 (319)
T 1gq8_A          237 QSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATT  312 (319)
T ss_dssp             SCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGT
T ss_pred             eccCCCcccccccCcCCCCCCCCeeEEEEEccccCCCCcccccccccccccCCHHHHHhhhHHhhcCCCCCcCCCC
Confidence            99999999999999999887788999999999999999999999996  665 68999999999999999999763
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 420
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-108
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 6e-77
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  319 bits (820), Expect = e-108
 Identities = 104/308 (33%), Positives = 152/308 (49%), Gaps = 20/308 (6%)

Query: 103 LTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLN 162
           + V   G  ++ +V +AV A P  S ++ +I I +  YRE V V   K N++FLG G  +
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68

Query: 163 TIIEWNDTANSTGGTAYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQ 222
           TII  +        T  S++VA   + F A +I+F NTA     G    QAVALR+G D 
Sbjct: 69  TIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDL 123

Query: 223 AAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDFIFGNARSLYEDCTINSIAEQVPDGM 282
           +AFY C     QD+LY    R +F +CFI G++DFIFGNA  + +DC I++     P   
Sbjct: 124 SAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR---PGSG 180

Query: 283 VSGSITAQGRQSMSEETGFSFVNCQIDGTGRV---------WLGRAWGVCAAVVFSKTYM 333
               +TAQGR   ++ TG      +I  T  +         +LGR W   +  V  ++ +
Sbjct: 181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI 240

Query: 334 ADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRAS---FGKQLMQYEAAPYMNIS 390
            +V++  GW  W       T+++GEY   G GA  S R +   F       EA  +   S
Sbjct: 241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGS 300

Query: 391 YIDGDEWL 398
           +I G  WL
Sbjct: 301 FIAGGSWL 308
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.04
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.67
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.16
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.11
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.93
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.53
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.09
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.02
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.25
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.18
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.12
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 94.43
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.32
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.14
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 93.99
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 93.7
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 92.64
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 90.12
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 87.07
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=8.8e-93  Score=704.37  Aligned_cols=296  Identities=35%  Similarity=0.596  Sum_probs=277.6

Q ss_pred             CceeEEEEcCCCCCCCccHHHHHhhCcCCCCCeEEEEEeCCceeeeEEecCcccceEEeecCccCeEEEeCCCccCCCCc
Q 039329           98 RVSLILTVDLHGCANFSSVQKAVDAVPSFSPSKTLIIIDSATYREKVVVNANKTNLIFLGRGYLNTIIEWNDTANSTGGT  177 (420)
Q Consensus        98 ~~~~~l~V~~dG~Gdf~TIQaAIdaap~~~~~~~~I~Ik~G~Y~E~V~I~~~K~~ItL~Geg~~~tvI~~~~~a~~~~Gt  177 (420)
                      ....+++|++||+|||+|||+|||++|+++++|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+++..+....+|
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            34556999999999999999999999999999999999999999999999999999999999999999999887766778


Q ss_pred             ccceeEEEEcCCeEEEceeEeeCCCCCCCCCCCCceEEEEEcCCceEEEeeEEeeccceEEeCcccEEEeccEEecceEE
Q 039329          178 AYSSSVAVFASNFTAYNISFMNTAPWPSPGDVGGQAVALRIGGDQAAFYNCGFYGAQDTLYDDHGRHYFKDCFIQGSIDF  257 (420)
Q Consensus       178 ~~sat~~V~a~~f~a~nItf~Nt~~~~~~g~~~~QAvAl~v~gd~~~f~nC~f~G~QDTL~~~~gr~yf~~C~IeG~VDF  257 (420)
                      ..++||.|.+++|+++||+|+|+++     ..++|||||++.+||++||||+|+|+|||||++.|||||++|||||+|||
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g-----~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDF  158 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAG-----AAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDF  158 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCC-----GGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCC-----CCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccE
Confidence            9999999999999999999999984     45689999999999999999999999999999999999999999999999


Q ss_pred             EeccceEEEeeeEEEEecccCCCCCceeEEEcCCCCCCCCCeeEEEEccEEeecc---------eEEecccccccceEEE
Q 039329          258 IFGNARSLYEDCTINSIAEQVPDGMVSGSITAQGRQSMSEETGFSFVNCQIDGTG---------RVWLGRAWGVCAAVVF  328 (420)
Q Consensus       258 IfG~g~a~Fe~C~I~s~~~~~~~g~~~g~ITA~~r~~~~~~~GfVF~nC~i~~~g---------~~yLGRPW~~~srvvf  328 (420)
                      |||+|+++||+|+|+++...  .+ ..|+||||+|.++.+++||||++|+|++++         ++||||||+++++|||
T Consensus       159 IfG~~~a~f~~c~i~~~~~~--~~-~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf  235 (319)
T d1gq8a_         159 IFGNAAVVLQDCDIHARRPG--SG-QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVV  235 (319)
T ss_dssp             EEESCEEEEESCEEEECCCS--TT-CCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEE
T ss_pred             EecCceeEeecceeeeecCC--CC-CceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEE
Confidence            99999999999999987532  22 568999999999999999999999999753         5899999999999999


Q ss_pred             eccccCcccCCCCCCCCCCCCCCceeEEEeecccCCCCCCccccccc---ccCCHHhHcCccccccccCCCCCccc
Q 039329          329 SKTYMADVVSSDGWNDWQDPSRDLTVFFGEYDCLGPGANYSYRASFG---KQLMQYEAAPYMNISYIDGDEWLHHH  401 (420)
Q Consensus       329 ~nt~m~~~I~p~GW~~w~~~~~~~t~~f~EY~n~GpGa~~s~Rv~w~---~~Lt~~eA~~yt~~~fi~g~~W~p~~  401 (420)
                      ++|+|+++|.|+||.+|+.+..+++++|+||+|+|||+++++||+|+   ++|+++||++|+.++||+|++|+|+.
T Consensus       236 ~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t  311 (319)
T d1gq8a_         236 MQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKAT  311 (319)
T ss_dssp             ESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGG
T ss_pred             EecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccC
Confidence            99999999999999999988888999999999999999999999997   58999999999999999999999975
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure