BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039330
         (205 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
           Phosphate-responsive Signal Transduction Pathway
 pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
 pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
           Phosphate- Responsive Signal Transduction Pathway With
           Bound Atp-Gamma-S
          Length = 293

 Score = 30.8 bits (68), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 57  VVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRI--NGCLTRLNVHH 114
            +T +H    P++SI  Y  R+ K+S       + +  Y+D  LQ +  +  L  L  H 
Sbjct: 63  TLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYID-LLQTVYPDFTLNSLTAHR 121

Query: 115 LLITSFLVAAKFVDDDTA--------------EMNKLEMNFL 142
            L+T+  VA K + D  +              E+N LE +FL
Sbjct: 122 FLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFL 163


>pdb|2QYV|A Chain A, Crystal Structure Of Putative Xaa-His Dipeptidase
           (Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
           Resolution
 pdb|2QYV|B Chain B, Crystal Structure Of Putative Xaa-His Dipeptidase
           (Yp_718209.1) From Haemophilus Somnus 129pt At 2.11 A
           Resolution
          Length = 487

 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 125 KFVDDDTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQ 162
           KF D   AE+   E N +FTLE K+    +VF+  C++
Sbjct: 284 KFADVIKAELALTEPNLIFTLE-KVEKPQQVFSSQCTK 320


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,644,204
Number of Sequences: 62578
Number of extensions: 137110
Number of successful extensions: 230
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)