BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039330
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q75HV0|CCP31_ORYSJ Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1
Length = 236
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 107/164 (65%), Gaps = 14/164 (8%)
Query: 17 VDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIE 76
V K ++ P+VL +L++ L+RS+QKNE ++K K+ TIFH +AP LSI+ Y E
Sbjct: 25 VSQSKKNNTEYPKVLLLLAAYLDRSVQKNEDLLDSNKIKDSSTIFHGHRAPDLSIKLYAE 84
Query: 77 RVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD------- 129
R+FKYS CSPSCF++A IY++R+LQ+ + +T L+VH LLITS +VAAKF DD
Sbjct: 85 RIFKYSECSPSCFVLALIYMERYLQQPHVYMTSLSVHRLLITSVVVAAKFTDDAFFNNAF 144
Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
T EMN+LE++ LF L+ +L V E F YC QL+ E
Sbjct: 145 YARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKE 188
>sp|O80513|CCU41_ARATH Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
Length = 202
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 15/153 (9%)
Query: 29 RVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSC 88
++++ LSS+LER + N+ + + + + + V++FH P+++I+ Y+ER+FKY+ CSPSC
Sbjct: 12 KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLERIFKYANCSPSC 71
Query: 89 FIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTAE 133
F+VAY+YLDRF R + NVH LLITS +VAAKF+DD T E
Sbjct: 72 FVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKE 131
Query: 134 MNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
MN LE++FLF L +L+VT F Y S L E
Sbjct: 132 MNFLELDFLFGLGFELNVTPNTFNAYFSYLQKE 164
>sp|Q9SHD3|CCU21_ARATH Cyclin-U2-1 OS=Arabidopsis thaliana GN=CYCU2-1 PE=1 SV=1
Length = 222
Score = 130 bits (326), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 15/170 (8%)
Query: 24 SSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSR 83
S++ P V+S+LSS++ER++ +NE S++ +F C + P ++I+ Y+ER+F+Y++
Sbjct: 24 SNTVPLVISVLSSLIERTLARNERISRSYGGFGKTRVFDCREIPDMTIQSYLERIFRYTK 83
Query: 84 CSPSCFIVAYIYLDRFLQRINGCLTRL-NVHHLLITSFLVAAKFVDD------------- 129
PS ++VAY+Y+DRF Q G L NVH LLIT+ ++A+K+V+D
Sbjct: 84 AGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLLITTIMIASKYVEDMNYKNSYFAKVGG 143
Query: 130 -DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTA 178
+T ++N LE+ FLF + KLHV VF YC L+ E + + + A
Sbjct: 144 LETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLEREVSIGGGYQIEKA 193
>sp|Q9M205|CCU22_ARATH Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1
Length = 230
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 19/176 (10%)
Query: 22 KKSSSTPRVLSILSSVLERSIQKNESSSK----ASKKKEVVTIFHCSKAPSLSIRQYIER 77
+ +S TP V+S+LSS+++R++ +NE S+ +S IF C + P ++I+ Y+ R
Sbjct: 24 QNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGAGGKTQIFDCREIPDMTIQSYLGR 83
Query: 78 VFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRL-NVHHLLITSFLVAAKFVDD------- 129
+F+Y++ PS ++VAY+Y+DRF Q G L NVH LLIT+ ++A+K+V+D
Sbjct: 84 IFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLITTIMIASKYVEDLNYRNSY 143
Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTA 178
+T ++NKLE+ FLF + KLHV VF YC L+ E + + + A
Sbjct: 144 FAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLEREVSFGGGYQIEKA 199
>sp|Q9LY16|CCU42_ARATH Cyclin-U4-2 OS=Arabidopsis thaliana GN=CYCU4-2 PE=1 SV=1
Length = 216
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 15/154 (9%)
Query: 28 PRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
P V++ +SS+L+R + N+ S+ ++ + ++ F+ PS+SIR Y+ER+FKY+ CS S
Sbjct: 21 PNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADCSDS 80
Query: 88 CFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
C+IVAYIYLDRF+Q+ + NVH L+ITS LV+AKF+DD T
Sbjct: 81 CYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGITTE 140
Query: 133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
EMN LE++FLF + +L+VT + YCS L E
Sbjct: 141 EMNLLELDFLFGIGFQLNVTISTYNDYCSSLQRE 174
>sp|Q7XC35|CCP41_ORYSJ Cyclin-P4-1 OS=Oryza sativa subsp. japonica GN=CYCP4-1 PE=2 SV=1
Length = 212
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 104/180 (57%), Gaps = 18/180 (10%)
Query: 21 GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVV---TIFHCSKAPSLSIRQYIER 77
G+ + + PRV++ILSS+L+R ++N++++ A+ E + F P++SI Y+ER
Sbjct: 4 GEVAEAVPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLER 63
Query: 78 VFKYSRCSPSCFIVAYIYLDRFLQRING-CLTRLNVHHLLITSFLVAAKFVDD------- 129
+F+++ CSPSC++VAYIYLDRFL+R + NVH LLITS L A KFVDD
Sbjct: 64 IFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAY 123
Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLH 182
EMN LE++FLF + L+VT FA YC+ L E E+ LH
Sbjct: 124 FARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQPPAVDLPRLH 183
>sp|Q9LJ45|CCU11_ARATH Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1
Length = 210
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 108/178 (60%), Gaps = 16/178 (8%)
Query: 5 LSLCTNDQFICLVDSPGKKSSSTPRVLSILSSVLERSIQKNESSSKASKK-KEVVTIFHC 63
L+ +D+ +V ++TPRVL+I+S V+E+ + +NE +K +K + + FH
Sbjct: 2 LTAAGDDELDPVVGPESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHG 61
Query: 64 SKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCL-TRLNVHHLLITSFLV 122
+APS+SI +Y+ER++KY++CSP+CF+V Y+Y+DR + G L LNVH LL+T ++
Sbjct: 62 VRAPSISIAKYLERIYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMI 121
Query: 123 AAKFVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
AAK +DD A++NK+E+ LF L+ ++ V+ VF YC L+ E
Sbjct: 122 AAKILDDVHYNNEFYARVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKE 179
>sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYCU3-1 PE=1 SV=2
Length = 221
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 96/174 (55%), Gaps = 16/174 (9%)
Query: 21 GKKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFK 80
GK+ P VLS LSS LERS+ N + VT+F P +SI Y++R+FK
Sbjct: 25 GKRLKKPPTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFK 84
Query: 81 YSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD----------- 129
YS CSPSCF++A+IY+D FL + L LNVH L+IT+ ++AAK DD
Sbjct: 85 YSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARV 144
Query: 130 ---DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAA--EEWWVTTA 178
T E+N+LEM LFTL+ KL V + F +C QL+ + EW + A
Sbjct: 145 GGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQNRDGFQIEWPIKEA 198
>sp|Q9FKF6|CCU43_ARATH Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1
Length = 219
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 28 PRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPS 87
P VL+ +S +L+R + N++ S+ K + PS+SIR Y+ER+F+Y+ CS S
Sbjct: 23 PSVLTAMSYLLQRVSETNDNLSQKQKPSSFTGV----TKPSISIRSYLERIFEYANCSYS 78
Query: 88 CFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD--------------DTA 132
C+IVAYIYLDRF+++ + NVH L+ITS LV+AKF+DD
Sbjct: 79 CYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYYAKVGGISRE 138
Query: 133 EMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGA 168
EMN LE++FLF + +L+VT F YC L E A
Sbjct: 139 EMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMA 174
>sp|Q7FAT5|CCP21_ORYSJ Cyclin-P2-1 OS=Oryza sativa subsp. japonica GN=CYCP2-1 PE=2 SV=1
Length = 217
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 19/173 (10%)
Query: 21 GKKSSSTPRVLSILSSVLERSIQKNE---SSSKASKKKEVVTIFHCSKAPSLSIRQYIER 77
G + STP V+S+L+S+LER I +NE +++ + F +S+ ++ER
Sbjct: 19 GTTALSTPVVVSVLASLLERHIARNERDQAAAADGEAARRARAFDSGTVLDMSLHAFLER 78
Query: 78 VFKYSRCSPSCFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDD------- 129
+Y+ SP ++VAY YLDR L+R +G + N LL T+ LVA+KFV+D
Sbjct: 79 FSRYANVSPQVYVVAYAYLDR-LRRGDGVRVVSANAQRLLTTAILVASKFVEDRNYKNSY 137
Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWV 175
AE++ LE++FLF ++ +L+V+ VF YC L+ E + + V
Sbjct: 138 FAAVGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREVSYGGGYQV 190
>sp|Q0J9W0|CCP11_ORYSJ Cyclin-P1-1 OS=Oryza sativa subsp. japonica GN=CYCP1-1 PE=3 SV=2
Length = 264
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 24 SSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTI-------FHCSK---APSLSIRQ 73
S+ P L +++ ++R + +N++ S E F ++ AP + + Q
Sbjct: 19 SAPPPPELDMVARAVQRLVARNDAVEALSGGGEAAAGLGAGMAAFEAARGAPAPRIGVAQ 78
Query: 74 YIERVFKYSRCSPSCFIVAYIYLDRFL-QRINGCLTRLNVHHLLITSFLVAAKFVDD--- 129
Y+ERV +Y+ P C++VAY Y+D +R + NVH LL+ LVA+K +DD
Sbjct: 79 YLERVHRYAGLEPECYVVAYAYVDMAAHRRPAAAVASRNVHRLLLACLLVASKVLDDFHH 138
Query: 130 -----------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166
AEMN+LE+ L L+ ++ ++ V+ Y L+ E
Sbjct: 139 NNAFFARVGGVSNAEMNRLELELLAVLDFEVMLSHRVYELYREHLEKE 186
>sp|P40186|PCL7_YEAST PHO85 cyclin-7 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL7 PE=1 SV=3
Length = 285
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 35/172 (20%)
Query: 27 TPRVLSILSSVLERSIQKNESSSKASKK------KEVVT---IFHCSKAPSLSIRQYIER 77
T ++ ++S++L R I N+ ++ S++ E++T F+ P +++ QY+ER
Sbjct: 107 TDELILMISALLNRIITANDETTDVSQQVSDETEDELLTPILAFYGKNVPEIAVVQYLER 166
Query: 78 VFKYSRCSPSCFIVAYIYLDRFLQRI------NGCLTRL------NVHHLLITSFLVAAK 125
+ KY + F+ +Y DR + NGC +L N+H LLIT + K
Sbjct: 167 IQKYCPTTNDIFLSLLVYFDRISKNYGHSSERNGCAKQLFVMDSGNIHRLLITGVTICTK 226
Query: 126 FVDD--------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQL 163
F+ D E+N LE+ FL + KL V+ E KY + L
Sbjct: 227 FLSDFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKYANLL 278
>sp|O42979|YGZA_SCHPO PHO85 cyclin-like protein C20F10.10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC20F10.10 PE=3 SV=1
Length = 243
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 26/161 (16%)
Query: 29 RVLSILSSVLERSIQKNESSSKASKKKEVVT----------IFHCSKAPSLSIRQYIERV 78
++L ++S L R + N+S +A++ ++ IF PS+SI+ Y+ R+
Sbjct: 30 KLLEMISVFLSRLTRLNDSKQEATESDQIPLSPTSLKNPCLIFSAKNVPSISIQAYLTRI 89
Query: 79 FKYSRCSPSCFIVAYIYLDRFLQRINGC--LTRLNVHHLLITSFLVAAKFVDD------- 129
KY + F+ IYLDR + + + N+H LI F A+KF D
Sbjct: 90 LKYCPATNDVFLSVLIYLDRIVHHFHFTVFINSFNIHRFLIAGFTAASKFFSDVFYTNSR 149
Query: 130 -------DTAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQL 163
E+N LE++F + L ++ E Y L
Sbjct: 150 YAKVGGIPLHELNHLELSFFVFNDFNLFISLEDLQAYGDLL 190
>sp|Q06712|PREG_NEUCR Nuc-1 negative regulatory protein preg OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=preg PE=1 SV=1
Length = 483
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 33 ILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVA 92
+++ +L I+ N+ +++ ++ +T FH P +S+ Y+ R+ K++ SP +
Sbjct: 278 LIAHMLGELIELNDEAAQKVGQRHNLTRFHSRTTPGISVLDYLHRLAKHAYLSPPILLSM 337
Query: 93 YIYLDRFLQRING-CLTRLNVHHLLITSFLVAAKFVDDD--------------TAEMNKL 137
Y+DR + + L VH LIT+ VAAK + D AE+N L
Sbjct: 338 VYYIDRLCALYSDFTINTLTVHRFLITAATVAAKGLSDSFLTNTLYARVGGVRVAELNML 397
Query: 138 EMNFLFTLELKLHVTTEVFAKYCSQL 163
E+ FL ++ K+ +V Y L
Sbjct: 398 ELEFLHRVDWKIVPDPDVLVAYYGGL 423
>sp|Q6NRF4|CCY1B_XENLA Cyclin-Y-like protein 1-B OS=Xenopus laevis GN=ccnyl1-b PE=2 SV=1
Length = 343
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 55 KEVVTIFHCSKAPSLS-IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVH 113
+E VT +C P I +++ +F ++ + C IV +YL+R L + N
Sbjct: 156 REEVTDDYCKHDPDHKHIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPSNWK 215
Query: 114 HLLITSFLVAAKFVDDDTA---------------EMNKLEMNFLFTLELKLHVTTEVFAK 158
+++ + L+A+K DD +MN++E +FL L+ ++V V+AK
Sbjct: 216 RIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAK 275
Query: 159 Y 159
Y
Sbjct: 276 Y 276
>sp|Q5U5D0|CCY1A_XENLA Cyclin-Y-like protein 1-A OS=Xenopus laevis GN=ccnyl1-a PE=2 SV=1
Length = 339
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 55 KEVVTIFHCSKAPSLS-IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVH 113
+E V +C P I +++ +F ++ + C IV +YL+R L + N
Sbjct: 152 REEVAHDYCKHDPDHKHIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPSNWK 211
Query: 114 HLLITSFLVAAKFVDDDTA---------------EMNKLEMNFLFTLELKLHVTTEVFAK 158
+++ + L+++K DD +MN++E +FL L+ ++VT V+AK
Sbjct: 212 QIVLGAILLSSKVWDDQAVWNVDYCQIMKDITVEDMNEMERHFLELLQFNINVTASVYAK 271
Query: 159 Y 159
Y
Sbjct: 272 Y 272
>sp|Q8BGU5|CCNY_MOUSE Cyclin-Y OS=Mus musculus GN=Ccny PE=1 SV=1
Length = 341
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 54 KKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVH 113
K EV + I +++ +F ++ + C IV +YL+R L + N
Sbjct: 154 KSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWK 213
Query: 114 HLLITSFLVAAKFVDDDTA---------------EMNKLEMNFLFTLELKLHVTTEVFAK 158
+++ + L+A+K DD +MN+LE FL L+ ++V + V+AK
Sbjct: 214 RIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAK 273
Query: 159 Y 159
Y
Sbjct: 274 Y 274
>sp|Q8ND76|CCNY_HUMAN Cyclin-Y OS=Homo sapiens GN=CCNY PE=1 SV=2
Length = 341
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 54 KKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVH 113
K EV + I +++ +F ++ + C IV +YL+R L + N
Sbjct: 154 KSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPANWK 213
Query: 114 HLLITSFLVAAKFVDDDTA---------------EMNKLEMNFLFTLELKLHVTTEVFAK 158
+++ + L+A+K DD +MN+LE FL L+ ++V + V+AK
Sbjct: 214 RIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNINVPSSVYAK 273
Query: 159 Y 159
Y
Sbjct: 274 Y 274
>sp|P0C7X3|CCYL3_HUMAN Putative cyclin-Y-like protein 3 OS=Homo sapiens GN=CCNYL3 PE=2
SV=1
Length = 344
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 15/97 (15%)
Query: 78 VFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKF--------VDD 129
+F+ + + C IVA +Y+ R L N L N +++ + L+A+K VDD
Sbjct: 83 LFQVIKLTAPCAIVALVYIKRLLTSANIDLCPTNWKKIVLGTMLLASKVWRNHGLWSVDD 142
Query: 130 -----DTA--EMNKLEMNFLFTLELKLHVTTEVFAKY 159
DTA M+K+E FL LE +HV+ V+AKY
Sbjct: 143 SQNSKDTAVENMSKMEKCFLELLEFNIHVSASVYAKY 179
>sp|Q28EL0|CCYL1_XENTR Cyclin-Y-like protein 1 OS=Xenopus tropicalis GN=ccnyl1 PE=2 SV=1
Length = 343
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 55 KEVVTIFHCSKAPSLS-IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVH 113
+E V +C P I +++ +F ++ + C IV +YL+R L + N
Sbjct: 156 REEVADDYCKHDPDHKHIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPSNWK 215
Query: 114 HLLITSFLVAAKFVDDDTA---------------EMNKLEMNFLFTLELKLHVTTEVFAK 158
+++ + L+A+K DD +MN++E +FL L+ ++V V+AK
Sbjct: 216 RIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAK 275
Query: 159 Y 159
Y
Sbjct: 276 Y 276
>sp|P34624|YOJ1_CAEEL Uncharacterized cyclin-like protein ZK353.1 OS=Caenorhabditis
elegans GN=ZK353.1 PE=1 SV=3
Length = 357
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD 129
+I +++ +F ++ + C I+ +Y++R L L N +++ S ++A+K DD
Sbjct: 190 NIYRFVRNLFSSAQLTAECAIITLVYIERLLNYAEMDLCPSNWRRVVLGSIMLASKVWDD 249
Query: 130 ---------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKY 159
+ +MN+LE FL L+ + V + V+AKY
Sbjct: 250 QAVWNVDYCQILRDTNVDDMNELERRFLECLDFNIEVPSSVYAKY 294
>sp|Q5ZJH7|CNPD1_CHICK Protein CNPPD1 OS=Gallus gallus GN=CNPPD1 PE=2 SV=1
Length = 439
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT 131
++Y+ V + + SP ++A +Y++R R L +++ L + S +VA+K++ D+
Sbjct: 77 KKYVSHVSREACISPCSMMLALVYIERLRHRNPEYLQQISSSDLFLISMMVASKYLYDEG 136
Query: 132 AE------------------MNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEE 172
E MN LEMNFL ++ L+ + S L EG AE+
Sbjct: 137 EEEEVFNDEWGAAGKVDVQTMNTLEMNFLSAIDWSLYTDPRELFEVLSWL--EGRVAEK 193
>sp|Q8N7R7|CCYL1_HUMAN Cyclin-Y-like protein 1 OS=Homo sapiens GN=CCNYL1 PE=1 SV=2
Length = 359
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Query: 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFL--QRINGCLTRLNVHHLLITSFLVAAKFVD 128
I +++ +F ++ + C IV +YL+R L I+ C T N +++ + L+A+K D
Sbjct: 191 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPT--NWKRIVLGAILLASKVWD 248
Query: 129 DDTA---------------EMNKLEMNFLFTLELKLHVTTEVFAKY 159
D +MN++E +FL L+ ++V V+AKY
Sbjct: 249 DQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKY 294
>sp|Q08CI4|CCYL1_DANRE Cyclin-Y-like protein 1 OS=Danio rerio GN=ccnyl1 PE=2 SV=1
Length = 339
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130
I +++ +F ++ + C IV +YL+R L + N +++ + L+A+K DD
Sbjct: 169 IYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAELDICPSNWKRIVLGAILLASKVWDDQ 228
Query: 131 TA---------------EMNKLEMNFLFTLELKLHVTTEVFAKY 159
+MN++E +FL L+ ++V V+AKY
Sbjct: 229 AVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKY 272
>sp|Q5E9J2|CNPD1_BOVIN Protein CNPPD1 OS=Bos taurus GN=CNPPD1 PE=2 SV=1
Length = 411
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT 131
++Y+ V + + SP ++A +Y++R R L ++ L + S +VA+K++ D+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEG 138
Query: 132 AE------------------MNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEE 172
E +N LE FL ++ +L+ + S L EG AE+
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWRLYTDPREIFEVLSWL--EGCVAEQ 195
>sp|Q8K158|CNPD1_MOUSE Protein CNPPD1 OS=Mus musculus GN=Cnppd1 PE=2 SV=1
Length = 407
Score = 37.4 bits (85), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT 131
++Y+ V + + SP ++A +Y++R R L ++ L + S +VA+K++ D+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEG 138
Query: 132 AE------------------MNKLEMNFLFTLELKLHVTT-EVF 156
E +N LE +FL ++ +L+ E+F
Sbjct: 139 EEEEVFNDEWGAAGGVAVATLNALERSFLSAMDWRLYTDPREIF 182
>sp|Q6P7B2|CNPD1_RAT Protein CNPPD1 OS=Rattus norvegicus GN=Cnppd1 PE=2 SV=1
Length = 408
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT 131
++Y+ V + + SP ++A +Y++R R L ++ L + S +VA+K++ D+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEG 138
Query: 132 AE------------------MNKLEMNFLFTLELKLHVTT-EVF 156
E +N LE +FL ++ +L+ E+F
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERSFLSAMDWRLYTDPREIF 182
>sp|Q5R4U5|CNPD1_PONAB Protein CNPPD1 OS=Pongo abelii GN=CNPPD1 PE=2 SV=1
Length = 410
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT 131
++Y+ V + + SP ++A +Y++R R L ++ L + S +VA+K++ D+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEG 138
Query: 132 AE------------------MNKLEMNFLFTLELKLHVTT-EVF 156
E +N LE FL ++ L+ E+F
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPREIF 182
>sp|Q9BV87|CNPD1_HUMAN Protein CNPPD1 OS=Homo sapiens GN=CNPPD1 PE=2 SV=2
Length = 410
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT 131
++Y+ V + + SP ++A +Y++R R L ++ L + S +VA+K++ D+
Sbjct: 79 KKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEG 138
Query: 132 AE------------------MNKLEMNFLFTLELKLHVTT-EVF 156
E +N LE FL ++ L+ E+F
Sbjct: 139 EEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPREIF 182
>sp|P20052|PHO80_YEAST PHO85 cyclin PHO80 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PHO80 PE=1 SV=3
Length = 293
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 33 ILSSVLERSIQKNE-SSSKASKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIV 91
++S +L I NE S++K S + +T +H P++SI Y R+ K+S +
Sbjct: 38 LISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMT 97
Query: 92 AYIYLDRFLQRI--NGCLTRLNVHHLLITSFLVAAKFVDDDTA--------------EMN 135
+ Y+D LQ + + L L H L+T+ VA K + D + E+N
Sbjct: 98 SLYYID-LLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELN 156
Query: 136 KLEMNFL 142
LE +FL
Sbjct: 157 ILENDFL 163
>sp|Q4R871|CCYL2_MACFA Cyclin-Y-like protein 2 OS=Macaca fascicularis GN=CCNYL2 PE=2 SV=1
Length = 360
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 15/104 (14%)
Query: 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD- 129
I +++ +FK R + IV+ IY++R + + + N +++ + L+A+K D
Sbjct: 192 IFRFVRTLFKAIRLTAEFAIVSLIYIERLVSYADIDICPTNWKRIVLGAILLASKVWSDM 251
Query: 130 --------------DTAEMNKLEMNFLFTLELKLHVTTEVFAKY 159
EMN+LE FL + + VT V++++
Sbjct: 252 AVWNEDYCKLFENITVEEMNELERQFLKLINYNIGVTGSVYSRF 295
>sp|P40038|PCL6_YEAST PHO85 cyclin-6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PCL6 PE=1 SV=1
Length = 420
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 61 FHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLT 108
F P + + QY +R+ KY + F+ +Y DR +R N T
Sbjct: 223 FRGKHVPQIGLDQYFQRIQKYCPTTNDVFLSLLVYFDRISKRCNSVTT 270
>sp|Q5T2Q4|CCYL2_HUMAN Cyclin-Y-like protein 2 OS=Homo sapiens GN=CCNYL2 PE=2 SV=2
Length = 361
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 54 KKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVH 113
+KEV+ + I +++ +FK R + IV+ IY++R + + + N
Sbjct: 176 RKEVLEEYFKYDPEHKLIFRFVRTLFKAMRLTAEFAIVSLIYIERLVSYADIDICPTNWK 235
Query: 114 HLLITSFLVAAKFVDD---------------DTAEMNKLEMNFLFTLELKLHVTTEVFAK 158
+++ + L+A+K D EMN+LE FL + +T V+++
Sbjct: 236 RIVLGAILLASKVWSDMAVWNEDYCKLFKNITVEEMNELERQFLKLINYNNSITNSVYSR 295
Query: 159 Y 159
+
Sbjct: 296 F 296
>sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6
PE=2 SV=3
Length = 1466
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 10 NDQFICLVDSPG-KKSSSTPRVLSILSSVLERSIQKNESSSKASKKKEVVTIFHCSKAPS 68
N++ I + D P +S +T + I S LE + +T F KA
Sbjct: 231 NEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWD-----------DGERRITTFKLIKALF 279
Query: 69 LSI-RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVA 123
LS+ R + + SC++ Y+ +D F+Q +NG N ++L+T+F VA
Sbjct: 280 LSVWRDIVLSALLAFVYTVSCYVAPYL-MDNFVQYLNGNRQYKNQGYVLVTTFFVA 334
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKF 126
Q I R+ K A +Y+ RF ++ + R N HH+L+T+ +A K
Sbjct: 53 QQINRLGKRMGLRQQALATAQVYIKRFYTKVE--IRRTNPHHVLVTALYLACKM 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,529,732
Number of Sequences: 539616
Number of extensions: 2277052
Number of successful extensions: 7575
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7504
Number of HSP's gapped (non-prelim): 38
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)