Query 039330
Match_columns 205
No_of_seqs 166 out of 809
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:37:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08613 Cyclin: Cyclin; Inte 100.0 3.5E-29 7.6E-34 201.4 12.1 121 29-149 2-149 (149)
2 KOG1674 Cyclin [General functi 99.9 3E-24 6.5E-29 183.2 13.3 151 21-171 26-200 (218)
3 KOG1675 Predicted cyclin [Gene 99.7 1.9E-17 4.2E-22 146.1 6.1 122 66-189 188-324 (343)
4 PF00134 Cyclin_N: Cyclin, N-t 99.1 2.9E-10 6.4E-15 86.9 9.4 79 70-150 33-127 (127)
5 cd00043 CYCLIN Cyclin box fold 98.1 2.4E-05 5.1E-10 54.5 8.0 59 70-130 4-62 (88)
6 KOG0656 G1/S-specific cyclin D 98.0 2.6E-05 5.6E-10 70.8 9.1 93 70-162 80-191 (335)
7 smart00385 CYCLIN domain prese 97.8 0.00015 3.3E-09 49.9 7.3 56 73-130 1-56 (83)
8 KOG0653 Cyclin B and related k 97.3 0.00081 1.7E-08 62.1 7.9 82 70-153 160-258 (391)
9 TIGR00569 ccl1 cyclin ccl1. Un 97.1 0.0032 7E-08 56.6 9.1 91 72-164 60-171 (305)
10 KOG4164 Cyclin ik3-1/CABLES [C 96.9 0.002 4.3E-08 59.7 5.9 94 70-166 384-496 (497)
11 KOG0655 G1/S-specific cyclin E 96.5 0.012 2.5E-07 53.7 8.2 91 71-162 148-255 (408)
12 COG5333 CCL1 Cdk activating ki 96.0 0.028 6.1E-07 50.4 7.4 78 73-152 50-148 (297)
13 COG5024 Cyclin [Cell division 95.3 0.041 8.9E-07 51.9 6.3 84 70-156 215-316 (440)
14 KOG0834 CDK9 kinase-activating 93.8 0.26 5.6E-06 44.8 7.5 97 70-168 41-167 (323)
15 KOG0835 Cyclin L [General func 92.6 0.83 1.8E-05 41.8 8.8 90 73-164 28-153 (367)
16 KOG0794 CDK8 kinase-activating 89.0 0.81 1.7E-05 40.1 5.0 80 71-152 44-151 (264)
17 PF11357 Spy1: Cell cycle regu 78.1 18 0.00039 28.9 8.0 63 91-158 35-116 (131)
18 KOG1674 Cyclin [General functi 71.5 2.6 5.5E-05 36.2 1.8 82 88-169 3-109 (218)
19 KOG2496 Cdk activating kinase 70.7 15 0.00033 33.4 6.6 83 83-167 73-174 (325)
20 KOG0654 G2/Mitotic-specific cy 49.2 16 0.00035 33.8 3.0 85 70-156 139-239 (359)
21 PHA02054 hypothetical protein 43.8 72 0.0016 23.6 5.1 74 27-101 1-82 (94)
22 PRK00423 tfb transcription ini 43.1 2.4E+02 0.0053 25.1 10.2 90 72-163 126-230 (310)
23 PRK00423 tfb transcription ini 42.7 2.5E+02 0.0054 25.1 9.6 89 65-166 213-303 (310)
24 COG1405 SUA7 Transcription ini 31.7 3.2E+02 0.007 24.4 8.4 64 65-130 188-251 (285)
25 PF03540 TFIID_30kDa: Transcri 22.3 66 0.0014 21.6 1.7 29 99-130 11-39 (51)
No 1
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry includes cyclin PHO80 and other cyclins that partner with the cyclin-dependent kinase (CDK) PHO85. The PHO80/PHO85 cyclin-cdk complex is used for a regulatory process other than cell-cycle control []. This entry also includes other PHO80-like cyclins that are involved in the cell-cycle control. They belong to the P/U family and interact preferentially with CDKA1 [].; GO: 0019901 protein kinase binding, 0000079 regulation of cyclin-dependent protein kinase activity; PDB: 2PK9_D 2PMI_D.
Probab=99.96 E-value=3.5e-29 Score=201.41 Aligned_cols=121 Identities=40% Similarity=0.755 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHhhcCCccccc----------cccccccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 039330 29 RVLSILSSVLERSIQKNESSSKASK----------KKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDR 98 (205)
Q Consensus 29 ~ll~~ia~~Le~li~~nd~~~~~~~----------~~~~~t~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidR 98 (205)
+++..|+.++++++..|+.....++ ..+..+.|++..+|++++.+|+.||+++++|+++|+++|++||+|
T Consensus 2 ~~~~~i~~~l~~~~~~n~~~~~~s~~~~~~~~~~~~~~~~~~F~~~~~p~i~i~~fl~ri~~~~~~s~~~~i~aliYl~R 81 (149)
T PF08613_consen 2 KLVQSIARQLDRLINNNESTAQSSSSSSSPSSPFQQSPKISQFHSQSVPSISIRDFLSRILKYTQCSPECLILALIYLDR 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------T---------T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCchhhhhcccccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 5899999999999999987654321 234567899999999999999999999999999999999999999
Q ss_pred Hhh---ccCccccccchHHHHHHHHHhhhcccccc--------------HHHHHHHHHHHHHhCCCce
Q 039330 99 FLQ---RINGCLTRLNVHHLLITSFLVAAKFVDDD--------------TAEMNKLEMNFLFTLELKL 149 (205)
Q Consensus 99 l~~---~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------~~ELN~LE~~FL~~Ldf~L 149 (205)
+.+ .+++.+++.||||||++|+|+|+||+||. ++|||.||++||++|||+|
T Consensus 82 l~~~~~~~~~~~~~~~~~Rl~l~alilA~K~~~D~~~~n~~~a~v~gis~~eln~lE~~fL~~l~~~L 149 (149)
T PF08613_consen 82 LRQRSRKPNIPLNSSNIHRLFLTALILASKFLDDNTYSNKSWAKVGGISLKELNELEREFLKLLDYNL 149 (149)
T ss_dssp HHH--H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT--
T ss_pred HHHhhcccccccccchhHHHHHHHHHHHHhhcccccccHHHHHhhcCCCHHHHHHHHHHHHHHCCCcC
Confidence 999 58899999999999999999999999998 9999999999999999997
No 2
>KOG1674 consensus Cyclin [General function prediction only]
Probab=99.91 E-value=3e-24 Score=183.20 Aligned_cols=151 Identities=43% Similarity=0.719 Sum_probs=137.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhhcCCccc--cccccccccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 039330 21 GKKSSSTPRVLSILSSVLERSIQKNESSSKA--SKKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDR 98 (205)
Q Consensus 21 ~~~~~~~p~ll~~ia~~Le~li~~nd~~~~~--~~~~~~~t~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidR 98 (205)
+...+.+|.++..++.++++....|+....+ ......++.|++...|+|++.+|++||.+|++|+++|+|+|++|+||
T Consensus 26 ~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yleri~k~~~~s~~~lv~al~Yldr 105 (218)
T KOG1674|consen 26 GRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYLERIFKYSKCSPECLVLALVYLDR 105 (218)
T ss_pred cccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHHHHHHHHhcCCchhhhhhhhhhhh
Confidence 5566778999999999999999999866532 22345688999999999999999999999999999999999999999
Q ss_pred Hhhc-------cCccccccc-hHHHHHHHHHhhhcccccc--------------HHHHHHHHHHHHHhCCCceeeCHHHH
Q 039330 99 FLQR-------INGCLTRLN-VHHLLITSFLVAAKFVDDD--------------TAEMNKLEMNFLFTLELKLHVTTEVF 156 (205)
Q Consensus 99 l~~~-------~~~~l~~~n-~hRL~ltal~lAsK~~dD~--------------~~ELN~LE~~FL~~Ldf~L~Vs~eef 156 (205)
+.++ +...+++.| +||++++++++|+||.+|. .+|||.||.+||+.+||+|.|+.++|
T Consensus 106 ~~~~~~~~~~~~~~~i~s~n~vhR~lit~v~vs~kf~~d~~y~n~~~a~vggl~~~eln~lE~~~l~~~~~~l~i~~~~~ 185 (218)
T KOG1674|consen 106 FVKQPQARSVKPQSLINSLNKVHRLLITTVTVSTKFLDDVYYSNAYYAKVGGLTTDELNKLELDLLFLLDFRLIISRSEF 185 (218)
T ss_pred hhhhhcccccCcccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHhCCCChHhhhhhhHHHHhhCCeEEEechhHH
Confidence 9985 678889999 9999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 039330 157 AKYCSQLDMEGAAAE 171 (205)
Q Consensus 157 ~~y~~~L~~~~~~~~ 171 (205)
..|+..++++....+
T Consensus 186 ~~~~~~~~~~~~~~~ 200 (218)
T KOG1674|consen 186 NLYEDLLEREENLNK 200 (218)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998877664
No 3
>KOG1675 consensus Predicted cyclin [General function prediction only]
Probab=99.69 E-value=1.9e-17 Score=146.15 Aligned_cols=122 Identities=23% Similarity=0.404 Sum_probs=113.4
Q ss_pred CCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc---------------
Q 039330 66 APSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--------------- 130 (205)
Q Consensus 66 ~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------- 130 (205)
+|..-+..|+.-.+.++.++.+|-++.|+|++|+..-.+...+|.||+|..+.++++|+|.|+|.
T Consensus 188 ~~~~ri~k~v~~l~~~~qlta~~aiitL~~~erl~~~~e~~~~p~~w~r~~~g~il~sskv~~dqs~wnvdycqIlKd~t 267 (343)
T KOG1675|consen 188 PGLVRIKKFVRILFSWAQLTAECDIITLVYAERLLWLAERDPCPRNWSRAVLGEILLSSKVYDDQSVWNVDYCEILKDQS 267 (343)
T ss_pred cchhheehhhhhHhhhhhhhhccchHHHHhhHhhhhHhhcCCCcchhhhhhhhhheehhhhhhhhhcccHHHHHHHhhcc
Confidence 34456888999999999999999999999999999877777899999999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHhhhhcccccccccccCCcCcchhH
Q 039330 131 TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDMEGAAAEEWWVTTAAPLHDGQRHTV 189 (205)
Q Consensus 131 ~~ELN~LE~~FL~~Ldf~L~Vs~eef~~y~~~L~~~~~~~~~~~~~~~~pl~~~~~~~~ 189 (205)
+++||.|||+||.+|+||+.|...+|.+||+.|+ .++.+++..|+ +.|++|+..+..
T Consensus 268 veDmNe~ERqfLelLqfNinvp~svYAKyYfdlr-~Lae~n~L~f~-~ePlsKeRaqkl 324 (343)
T KOG1675|consen 268 VDDMNALERQFLELLQFNINVPSSEYAKYYFDLR-CLAEANPLLFP-CEPLSKERAQKL 324 (343)
T ss_pred HhhHHHHHHHHHHHHhhccCccHHHHHHHHHHHh-hhccccccccc-cccchhhHHHHH
Confidence 8899999999999999999999999999999998 78999999999 999999887765
No 4
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. Cyclins contain two domains of similar all-alpha fold, of which this entry is associated with the N-terminal domain.; PDB: 2W2H_B 3RGF_B 1KXU_A 1JKW_A 1URC_D 2WMB_D 1H26_D 1GY3_B 2UUE_D 1E9H_D ....
Probab=99.15 E-value=2.9e-10 Score=86.89 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=69.3
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+|+.++....+++++++..|+.|+||+..+.. +...+++.+.++|+++|+|+.++. .++
T Consensus 33 ~~~~~i~~~~~~~~l~~~~~~~A~~~~dr~~~~~~--~~~~~~~li~~~cl~lA~K~~e~~~~~~~~~~~~~~~~~~~~~ 110 (127)
T PF00134_consen 33 IIIDWIIELCQRLKLSPETLHLAIYLFDRFLSKRP--VNRSKLQLIALACLFLASKMEEDNPPSISDLIRISDNTFTKKD 110 (127)
T ss_dssp HHHHHHHHHHHHTT-BHHHHHHHHHHHHHHHTTS---TTCCGHHHHHHHHHHHHHHHHTSS--HHHHHHHHTTTSSHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhcc--cccchhhhhhhhHHHHhhhhhccccchHHHHHHHHcCCCCHHH
Confidence 57889999999999999999999999999988543 678899999999999999999995 899
Q ss_pred HHHHHHHHHHhCCCcee
Q 039330 134 MNKLEMNFLFTLELKLH 150 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~ 150 (205)
+..||+.+|..|+|+|+
T Consensus 111 i~~~E~~iL~~L~f~ln 127 (127)
T PF00134_consen 111 ILEMEREILSALNFDLN 127 (127)
T ss_dssp HHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHCCCCcC
Confidence 99999999999999984
No 5
>cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins, TFIIB and RB contain 2 copies of the domain.
Probab=98.09 E-value=2.4e-05 Score=54.53 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~ 130 (205)
...+|+.++.+..++++++...|..|+||+.....+ ...+.+.+..+|+.+|+|+.++.
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ia~a~l~lA~k~~~~~ 62 (88)
T cd00043 4 TPLDFLRRVAKALGLSPETLTLAVNLLDRFLLDYSV--LGRSPSLVAAAALYLAAKVEEIP 62 (88)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccCChHHHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999999999885443 48899999999999999998885
No 6
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=2.6e-05 Score=70.77 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcc-ccccchHHHHHHHHHhhhcccccc-----------------H
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGC-LTRLNVHHLLITSFLVAAKFVDDD-----------------T 131 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~-l~~~n~hRL~ltal~lAsK~~dD~-----------------~ 131 (205)
-..++|-++.++-+|+++|+.+|.-|+||+.....+. -.++-..-|-++|+-+|+|+-+-. .
T Consensus 80 ~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~fea 159 (335)
T KOG0656|consen 80 QALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEA 159 (335)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccH
Confidence 3468999999999999999999999999999743322 134445678889999999986643 8
Q ss_pred HHHHHHHHHHHHhCCCcee-eCHHHHHHHHHH
Q 039330 132 AEMNKLEMNFLFTLELKLH-VTTEVFAKYCSQ 162 (205)
Q Consensus 132 ~ELN~LE~~FL~~Ldf~L~-Vs~eef~~y~~~ 162 (205)
+.+-+||+-.|..|+|++. |++-.|-.|.-.
T Consensus 160 ktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ 191 (335)
T KOG0656|consen 160 KTIQRMELLVLSTLKWRLRAVTPFSFIDHFLS 191 (335)
T ss_pred HHHHHHHHHHHhhccccccCCCchHHHHHHHH
Confidence 9999999999999999998 899888877543
No 7
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
Probab=97.76 E-value=0.00015 Score=49.93 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330 73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130 (205)
Q Consensus 73 ~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~ 130 (205)
+|+.++.+..++++++.-.|..|+||+....++ ...+.+.+..+|+.+|+|..+..
T Consensus 1 ~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~--~~~~~~~ia~a~l~lA~k~~~~~ 56 (83)
T smart00385 1 DFLRRVCKALNLDPETLNLAVNLLDRFLSDYKF--LKYSPSLIAAAALYLAAKTEEIP 56 (83)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ccCCHHHHHHHHHHHHHHHhcCC
Confidence 489999999999999999999999999885333 34889999999999999988765
No 8
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.00081 Score=62.14 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHH-hhhcc-------cccc---------HH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFL-VAAKF-------VDDD---------TA 132 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~-lAsK~-------~dD~---------~~ 132 (205)
-+.+++..+..+++++++++-+|.-++||+.....+ ...-.--+=++|++ +|+|| .+|. .+
T Consensus 160 iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v--~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~ 237 (391)
T KOG0653|consen 160 ILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKV--PLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSRE 237 (391)
T ss_pred HHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcc--cHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchH
Confidence 467899999999999999999999999999986332 22223345567757 99999 3333 89
Q ss_pred HHHHHHHHHHHhCCCceeeCH
Q 039330 133 EMNKLEMNFLFTLELKLHVTT 153 (205)
Q Consensus 133 ELN~LE~~FL~~Ldf~L~Vs~ 153 (205)
++-+||+..|..|+|++.+..
T Consensus 238 ~il~mE~~il~~L~f~l~~p~ 258 (391)
T KOG0653|consen 238 EILRMEKYILNVLEFDLSVPT 258 (391)
T ss_pred HHHHHHHHHHhccCeeecCCc
Confidence 999999999999999999864
No 9
>TIGR00569 ccl1 cyclin ccl1. University).
Probab=97.09 E-value=0.0032 Score=56.62 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-----------------HH
Q 039330 72 RQYIERVFKYSR--CSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-----------------TA 132 (205)
Q Consensus 72 ~~yl~rI~~~~~--~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-----------------~~ 132 (205)
..++.++....+ ++..+.-.|.+|++|+..+..+ ...+.+-+.+||+.+|+|+=+.. .+
T Consensus 60 ~~~i~~~~~~lkp~Lpq~viaTAivyf~RFy~~~Sv--~~~~p~~Ia~tclfLA~KvEE~~~si~~fv~~~~~~~~~~~~ 137 (305)
T TIGR00569 60 EKRLLDFCSAFKPTMPTSVVGTAIMYFKRFYLNNSV--MEYHPKIIMLTCVFLACKVEEFNVSIDQFVGNLKETPLKALE 137 (305)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhHHhccCch--hhcCHHHHHHHHHHHHHhccccCcCHHHHHhhccCCchhhHH
Confidence 345777777888 9999999999999999985443 35678899999999999986543 38
Q ss_pred HHHHHHHHHHHhCCCceeeCH--HHHHHHHHHHH
Q 039330 133 EMNKLEMNFLFTLELKLHVTT--EVFAKYCSQLD 164 (205)
Q Consensus 133 ELN~LE~~FL~~Ldf~L~Vs~--eef~~y~~~L~ 164 (205)
++-.+|..+|+.|+|+|.|.- .-...|...++
T Consensus 138 ~Il~~E~~lL~~L~F~L~V~hPyr~L~~~l~dl~ 171 (305)
T TIGR00569 138 QVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIK 171 (305)
T ss_pred HHHHHHHHHHHHCCCcEEeeCccHHHHHHHHHHH
Confidence 999999999999999999853 22334554444
No 10
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.002 Score=59.71 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD------------------- 130 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~------------------- 130 (205)
||..-++++-.-++++..+.-+|.||..++.-+. .++-.|-+-.--+|+++|+|+- |.
T Consensus 384 SlKREMr~l~~d~~id~~TVa~AyVYFEKliLkg--lisK~NRKlcAGAclLlaaKmn-D~Kks~vKslIek~Ee~fR~n 460 (497)
T KOG4164|consen 384 SLKREMRELGEDCGIDVVTVAMAYVYFEKLILKG--LISKQNRKLCAGACLLLAAKMN-DLKKSTVKSLIEKLEEQFRLN 460 (497)
T ss_pred HHHHHHHHhhhccCccceeehhHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhccc
Confidence 6777888899889999999999999999998643 2466677777889999999998 54
Q ss_pred HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHHHh
Q 039330 131 TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLDME 166 (205)
Q Consensus 131 ~~ELN~LE~~FL~~Ldf~L~Vs~eef~~y~~~L~~~ 166 (205)
.+||-..|.-.|.+|+|.|+++..|..-.|..|+.+
T Consensus 461 rrdLia~Ef~VlvaLefaL~~~~~eVlPHy~RL~~e 496 (497)
T KOG4164|consen 461 RRDLIAFEFPVLVALEFALHLPEHEVLPHYRRLQQE 496 (497)
T ss_pred HHhhhhhhhhHHHhhhhhccCChhhcchHHHHHhhc
Confidence 678888999999999999999999998888888754
No 11
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.012 Score=53.73 Aligned_cols=91 Identities=22% Similarity=0.328 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhccccc-------------c---HHHH
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDD-------------D---TAEM 134 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD-------------~---~~EL 134 (205)
+-|++..+..-.++-.|+|-+|.=|+||+.... ..+.-.|..-+=+||+.+|+|+=+= - -.++
T Consensus 148 LlDWlmEVCEvykLHRETFyLAvDy~DRyl~t~-~~v~kt~lQLIGitsLFIAAK~EEIYpPKl~eFAyvTDgAcs~ddI 226 (408)
T KOG0655|consen 148 LLDWLMEVCEVYKLHRETFYLAVDYFDRYLETQ-VEVSKTNLQLIGITSLFIAAKLEEIYPPKLIEFAYVTDGACSEDDI 226 (408)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHhhhhhHHHhhHHHHHHHHHHhhccCccccceeeeccCccchHHH
Confidence 678999999999999999999999999999743 3344556666779999999996321 1 8899
Q ss_pred HHHHHHHHHhCCCcee-eCHHHHHHHHHH
Q 039330 135 NKLEMNFLFTLELKLH-VTTEVFAKYCSQ 162 (205)
Q Consensus 135 N~LE~~FL~~Ldf~L~-Vs~eef~~y~~~ 162 (205)
-.||.-.|++|+|+|. |+.-.+-+-|.+
T Consensus 227 ltmE~iilkal~W~l~PiTii~WL~vylQ 255 (408)
T KOG0655|consen 227 LTMELIILKALKWELSPITIISWLNVYLQ 255 (408)
T ss_pred HHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 9999999999999997 444333333333
No 12
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.95 E-value=0.028 Score=50.41 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccc---cc------------------H
Q 039330 73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVD---DD------------------T 131 (205)
Q Consensus 73 ~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~d---D~------------------~ 131 (205)
.++.++-.+-++...++=.|.+|.+|+.-+.. +...+.+-+..|++.+|.|+=| |. .
T Consensus 50 k~i~~l~~~L~lp~~~laTAi~~f~Rf~Lk~s--v~e~~~~~vv~tcv~LA~K~ed~~~~I~i~~~~~~~~~se~~~~sr 127 (297)
T COG5333 50 KLIMDLCTRLNLPQTVLATAILFFSRFYLKNS--VEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSR 127 (297)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHhhcc--cccccHHHHHHhheeeeeecccccchhhHHHHHhhccccccccccH
Confidence 56888888889999999999999999976433 5788889999999999999877 22 6
Q ss_pred HHHHHHHHHHHHhCCCceeeC
Q 039330 132 AEMNKLEMNFLFTLELKLHVT 152 (205)
Q Consensus 132 ~ELN~LE~~FL~~Ldf~L~Vs 152 (205)
+++-.+|.+.|+.|+|+++|.
T Consensus 128 ~~Il~~E~~lLEaL~fd~~V~ 148 (297)
T COG5333 128 ERILEYEFELLEALDFDLHVH 148 (297)
T ss_pred HHHHHHHHHHHHHcccceEec
Confidence 789999999999999999985
No 13
>COG5024 Cyclin [Cell division and chromosome partitioning]
Probab=95.33 E-value=0.041 Score=51.88 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHH-HHHHHHhhhcccccc----------------HH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHL-LITSFLVAAKFVDDD----------------TA 132 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL-~ltal~lAsK~~dD~----------------~~ 132 (205)
.|-+|+..+....++.|+++-+|.-.+||+...+.+.+ +...| =++|+.+|+||=+=. .+
T Consensus 215 ~Lv~wlvevH~~F~llpeTL~lainiiDrfLs~~~v~l---~k~QLvg~s~LfIa~K~EE~~~p~i~~l~~~t~g~~t~~ 291 (440)
T COG5024 215 ILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSL---EKYQLVGISALFIASKYEEVNCPSIKDLVYATDGAFTRD 291 (440)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHHHHhccCcccH---HHHHHHHHHHHHHHHhHhHhcCHHHHHHHHHHcccccHH
Confidence 36789999999999999999999999999999776543 33444 478899999973322 88
Q ss_pred HHHHHHHHHHHhCCCceeeC-HHHH
Q 039330 133 EMNKLEMNFLFTLELKLHVT-TEVF 156 (205)
Q Consensus 133 ELN~LE~~FL~~Ldf~L~Vs-~eef 156 (205)
++-..|+..|..++|++-.. +.-|
T Consensus 292 ~i~~aE~~ml~~l~f~is~P~P~sF 316 (440)
T COG5024 292 DIIRAERYMLEVLDFNISWPSPMSF 316 (440)
T ss_pred HHHHHHHHHhhhcccccCCCChHHH
Confidence 99999999999999998754 4444
No 14
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning]
Probab=93.78 E-value=0.26 Score=44.84 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD------------------- 130 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~------------------- 130 (205)
....||..+-..-+++.-+.-.|.+|..|+.-...+. ....+-+-.+|+.+|.|.=|-.
T Consensus 41 ~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~--~~~~~~vA~sclfLAgKvEetp~kl~dIi~~s~~~~~~~~~ 118 (323)
T KOG0834|consen 41 EGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFK--KFDPYTVAASCLFLAGKVEETPRKLEDIIKVSYRYLNPKDL 118 (323)
T ss_pred HHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccc--cCcHHHHHHHHHHHHhhcccCcccHHHHHHHHHHHcCcccc
Confidence 3567999999999999999999999999998765543 3333556778888999864422
Q ss_pred ---------HHHHHHHHHHHHHhCCCceeeCH-HH-HHHHHHHHHHhhh
Q 039330 131 ---------TAEMNKLEMNFLFTLELKLHVTT-EV-FAKYCSQLDMEGA 168 (205)
Q Consensus 131 ---------~~ELN~LE~~FL~~Ldf~L~Vs~-ee-f~~y~~~L~~~~~ 168 (205)
.+++-.+|+-.|+.|+|++.|.. -. ...|...+..+..
T Consensus 119 ~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~l~~~~~ 167 (323)
T KOG0834|consen 119 ELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKKLKADEN 167 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHHhhhhhh
Confidence 77889999999999999999975 33 4566666665443
No 15
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=92.58 E-value=0.83 Score=41.79 Aligned_cols=90 Identities=16% Similarity=0.246 Sum_probs=68.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------------
Q 039330 73 QYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD---------------------- 130 (205)
Q Consensus 73 ~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~---------------------- 130 (205)
++|..---..+++..|...++|.+.|++....+. ..+..-+..+|+.+|||.=+.-
T Consensus 28 e~Iqea~ILL~L~q~a~atgqVLFqRf~~~ks~v--~~~~e~vv~ACv~LASKiEE~Prr~rdVinVFh~L~~r~~~~~~ 105 (367)
T KOG0835|consen 28 ELIQEAGILLNLPQVAMATGQVLFQRFCYSKSFV--RHDFEIVVMACVLLASKIEEEPRRIRDVINVFHYLEQRRESEAA 105 (367)
T ss_pred HHHHhhhHhhcCcHHHHHHHHHHHHHHHhccccc--cccHHHHHHHHHHHHhhhccccccHhHHHHHHHHHHHHHhccCc
Confidence 4555555556789999999999999999854432 3456778999999999976543
Q ss_pred ------------HHHHHHHHHHHHHhCCCceeeC--HHHHHHHHHHHH
Q 039330 131 ------------TAEMNKLEMNFLFTLELKLHVT--TEVFAKYCSQLD 164 (205)
Q Consensus 131 ------------~~ELN~LE~~FL~~Ldf~L~Vs--~eef~~y~~~L~ 164 (205)
..+.-+.|++.|..|+|+.+|. -..+..|...|+
T Consensus 106 ~~~~~~~~~~~lk~~~ir~e~~ILr~LGF~~Hv~hPhklii~YLqtL~ 153 (367)
T KOG0835|consen 106 EHLILARLYINLKMQVIRAERRILRELGFDVHVEHPHKLIIMYLQTLQ 153 (367)
T ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHhCCeeeeeccHHHHHHHHHHhc
Confidence 3456788999999999999985 345667766665
No 16
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription]
Probab=88.96 E-value=0.81 Score=40.09 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------- 130 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------- 130 (205)
...++..+..+.++-..++-.|.+|+.|+.-+.+ +...+..-+..||+-+|+|+=+--
T Consensus 44 ~~n~I~~lg~~lklRQ~ViATAivY~rRfy~r~S--~k~~~p~lla~TClyLAcKvEE~~i~~~r~l~~~a~~L~~~f~~ 121 (264)
T KOG0794|consen 44 MANVIQKLGQHLKLRQRVIATAIVYFRRFYLRKS--LKEIEPRLLAPTCLYLACKVEECPIVHIRLLVNEAKVLKTRFSY 121 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHhhhccc
Confidence 3467888888888888899999999999988655 356677788899999999975551
Q ss_pred --------HHHHHHHHHHHHHhCCCceeeC
Q 039330 131 --------TAEMNKLEMNFLFTLELKLHVT 152 (205)
Q Consensus 131 --------~~ELN~LE~~FL~~Ldf~L~Vs 152 (205)
.+.+-.+|...|+.||+-|.|-
T Consensus 122 ~~e~~~~~~~~I~e~Ef~llE~Ld~~LIVh 151 (264)
T KOG0794|consen 122 WPEKFPYERKDILEMEFYLLEALDCYLIVH 151 (264)
T ss_pred chhhcCCCcCcchhhhhhHHhhhceeEEEe
Confidence 4566778999999999999883
No 17
>PF11357 Spy1: Cell cycle regulatory protein; InterPro: IPR020984 Speedy (Spy1) is a cell cycle regulatory protein which activates CDK2, the major kinase that allows progression through G1/S phase and further replication events. Spy1 expression overcomes a p27-induced cell cycle arrest to allow for DNA synthesis, so cell cycle progression occurs due to an interaction between Spy1 and p27 []. Spy1 is also known as Ringo protein A.
Probab=78.05 E-value=18 Score=28.93 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------------HHHHHHHHHHHHHhCCCceee
Q 039330 91 VAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------TAEMNKLEMNFLFTLELKLHV 151 (205)
Q Consensus 91 ~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------~~ELN~LE~~FL~~Ldf~L~V 151 (205)
+..+|..|. |+.....|--.+ ..|+-+|+-+=+|. .....++-.+|...++|+..|
T Consensus 35 mV~~YF~Ra----gl~~~~Y~ri~F-FlALYLAndmEED~~~~K~~If~f~~G~~w~~~~~~F~klr~~~~~~m~~Ra~V 109 (131)
T PF11357_consen 35 MVIAYFSRA----GLFSWQYQRIHF-FLALYLANDMEEDDEEPKYEIFPFLYGKNWRSQIPQFHKLRDQFWRRMDWRAWV 109 (131)
T ss_pred HHHHHHHhc----ccchhhcchHHH-HHHHHHhhHHHhccchHHHHHHHHHHCcchHHHhHHHHHHHHHHHHHcCCceee
Confidence 344666665 444444444444 45589999888886 556778889999999999999
Q ss_pred CHHHHHH
Q 039330 152 TTEVFAK 158 (205)
Q Consensus 152 s~eef~~ 158 (205)
|.++.+.
T Consensus 110 sre~cEE 116 (131)
T PF11357_consen 110 SREECEE 116 (131)
T ss_pred CHHHHHH
Confidence 9988654
No 18
>KOG1674 consensus Cyclin [General function prediction only]
Probab=71.47 E-value=2.6 Score=36.18 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=62.4
Q ss_pred HHHHHHHHHH--HHhhccC--ccccccchHHHHHHHHHhhhcccccc---------------------HHHHHHHHHHHH
Q 039330 88 CFIVAYIYLD--RFLQRIN--GCLTRLNVHHLLITSFLVAAKFVDDD---------------------TAEMNKLEMNFL 142 (205)
Q Consensus 88 ~~v~ALiYid--Rl~~~~~--~~l~~~n~hRL~ltal~lAsK~~dD~---------------------~~ELN~LE~~FL 142 (205)
+++++..|++ |+..... ..-...+.++.++++++.+.|...|. ....|-+|+++|
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~ss~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~isi~~yl 82 (218)
T KOG1674|consen 3 TLMTMSVYINPDKLRLNLPDNPTGRNSSITPIFLTCLSSLLKRLNDSNENLSRENNKSWASPTTGFDGVSTPNISIRQYL 82 (218)
T ss_pred hhhHhHhhcCccchhhccCcccccccccccchHHHHHHHHHHHHHhcChhhhcccccccccccccccCCCCCCcchHHHH
Confidence 6677888888 7776422 12334568899999999999887665 556788999999
Q ss_pred HhCCCceeeCHHHHHHHHHHHHHhhhh
Q 039330 143 FTLELKLHVTTEVFAKYCSQLDMEGAA 169 (205)
Q Consensus 143 ~~Ldf~L~Vs~eef~~y~~~L~~~~~~ 169 (205)
..+.|...+++++|-.-+..+.+....
T Consensus 83 eri~k~~~~s~~~lv~al~Yldr~~~~ 109 (218)
T KOG1674|consen 83 ERIFKYSKCSPECLVLALVYLDRFVKQ 109 (218)
T ss_pred HHHHHHhcCCchhhhhhhhhhhhhhhh
Confidence 999999999999997655555554443
No 19
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=70.72 E-value=15 Score=33.37 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-----------------HHHHHHHHHHHHHhC
Q 039330 83 RCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-----------------TAEMNKLEMNFLFTL 145 (205)
Q Consensus 83 ~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-----------------~~ELN~LE~~FL~~L 145 (205)
.+.+++.-.|+.|..|+.=... +.....+-+..||+-+|.|.-+-. .+.+-..|...|+.|
T Consensus 73 ~lp~~Vv~TA~~fFkRffL~ns--vme~~pk~I~~tc~flA~Kieef~ISieqFvkn~~~~~~k~~e~vLk~E~~llqsL 150 (325)
T KOG2496|consen 73 NLPTSVVSTAIEFFKRFFLENS--VMEYSPKIIMATCFFLACKIEEFYISIEQFVKNMNGRKWKTHEIVLKYEFLLLQSL 150 (325)
T ss_pred CCchHHHHHHHHHHHHHHHhcc--hhhcChHHHHHHHHHHHhhhHhheecHHHHHhhccCcccccHHHHHhchHHHHHhh
Confidence 5788888899999999875322 235566788999999999975433 556668899999999
Q ss_pred CCceeeC--HHHHHHHHHHHHHhh
Q 039330 146 ELKLHVT--TEVFAKYCSQLDMEG 167 (205)
Q Consensus 146 df~L~Vs--~eef~~y~~~L~~~~ 167 (205)
+|+|.|- -.-++-|...++...
T Consensus 151 ~f~L~vh~PyRPleGFl~D~kt~l 174 (325)
T KOG2496|consen 151 KFSLTVHNPYRPLEGFLLDMKTRL 174 (325)
T ss_pred hhhheecCCCCchHHHHHHHHHHH
Confidence 9999874 234555555555543
No 20
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning]
Probab=49.15 E-value=16 Score=33.79 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+.+-.+.+-.+...++|-++..|+||+..... ++..--+++=.++..+|+||..-. -.+
T Consensus 139 ilvdwlvevsee~r~~~e~l~ls~~~~drfl~~~~--~~~~k~ql~g~s~m~I~sk~ee~~~~~~~ef~~itd~ty~~~q 216 (359)
T KOG0654|consen 139 ILVDWLVEVSEEYRLTFETLYLSVNYRDRFLSYKE--VNKQKLQLVGISAMLIASKYEEIKEPRVEEFCYITDNTYTYWQ 216 (359)
T ss_pred hhhhhhhHHHHHHHhhhhheeecHHHHHHHhccCc--cHHHHHHHhCcccceeeccchhhcchHHHHHHhhhhhhhHHHH
Confidence 67888888888889999999999999999987422 233334566678899999987654 678
Q ss_pred HHHHHHHHHHhCCCceeeCHHHH
Q 039330 134 MNKLEMNFLFTLELKLHVTTEVF 156 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~Vs~eef 156 (205)
+-.||...|..+.|.+......-
T Consensus 217 v~~~~~~il~~l~~~~~~pt~~~ 239 (359)
T KOG0654|consen 217 VLRMEIDILNALTFELVRPTSKT 239 (359)
T ss_pred HHHHHHHHHHHhHHHHhCchHHH
Confidence 89999999999999998876553
No 21
>PHA02054 hypothetical protein
Probab=43.82 E-value=72 Score=23.65 Aligned_cols=74 Identities=12% Similarity=0.339 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHHHHHhhcCCccccc----cccccccccCCCCCcc----cHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 039330 27 TPRVLSILSSVLERSIQKNESSSKASK----KKEVVTIFHCSKAPSL----SIRQYIERVFKYSRCSPSCFIVAYIYLDR 98 (205)
Q Consensus 27 ~p~ll~~ia~~Le~li~~nd~~~~~~~----~~~~~t~F~~~~~P~i----si~~yl~rI~~~~~~s~~~~v~ALiYidR 98 (205)
+|+++..||-++..+--- +..+++.. -.+..-.+-..-.|++ .+.+|+...++..+|+..||+++..=-..
T Consensus 1 m~k~~~~ial~~a~~h~v-~a~pe~Gsydeym~GAmIVY~N~IvpS~dnSv~Flehl~~kw~svkCsd~Cfq~Gy~eAk~ 79 (94)
T PHA02054 1 MPKIIAAVALLVATVHLV-SANPEVGSYDEFMQGAMIVYTNDIVHSKDNSVQFLEYLDTKWGSVGCSDTCFQLGYQEAKL 79 (94)
T ss_pred CchhHHHHHHHHHHhhee-ecCCCCCCHHHHhCccEEEEecccccccccHHHHHHHHHHHHhhcchhHHHHHHhhHHHHH
Confidence 467778888776554221 11111100 0011112223345665 57778888889999999999998765555
Q ss_pred Hhh
Q 039330 99 FLQ 101 (205)
Q Consensus 99 l~~ 101 (205)
+..
T Consensus 80 Fv~ 82 (94)
T PHA02054 80 FVA 82 (94)
T ss_pred Hhh
Confidence 554
No 22
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=43.09 E-value=2.4e+02 Score=25.11 Aligned_cols=90 Identities=13% Similarity=0.133 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------HHHHHHHH
Q 039330 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------TAEMNKLE 138 (205)
Q Consensus 72 ~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------~~ELN~LE 138 (205)
...|.++....+++..+.=-|..+..++.+... +...+..-+..+|+-+|.|...=. .+|+.+-+
T Consensus 126 ~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~~--~rgrs~~~i~AAclYiACR~~~~prtl~eI~~~~~v~~k~i~~~~ 203 (310)
T PRK00423 126 LSELDRIASQLGLPRSVREEAAVIYRKAVEKGL--IRGRSIEGVVAAALYAACRRCKVPRTLDEIAEVSRVSRKEIGRCY 203 (310)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--ccCCCHHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 345777888889999888888888888877533 345667888899999999863322 88999999
Q ss_pred HHHHHhCCCceee-CHHHH-HHHHHHH
Q 039330 139 MNFLFTLELKLHV-TTEVF-AKYCSQL 163 (205)
Q Consensus 139 ~~FL~~Ldf~L~V-s~eef-~~y~~~L 163 (205)
+.+++.|++++-+ +++.| .+|+..|
T Consensus 204 ~~l~k~L~~~~~~~~p~~~i~r~~~~L 230 (310)
T PRK00423 204 RFLLRELNLKLPPTDPIDYVPRFASEL 230 (310)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 9999999988754 34444 3444433
No 23
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=42.69 E-value=2.5e+02 Score=25.07 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--HHHHHHHHHHHH
Q 039330 65 KAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--TAEMNKLEMNFL 142 (205)
Q Consensus 65 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--~~ELN~LE~~FL 142 (205)
..|.++-.+|+.|+....+++..+.-.|...+.+.... + .....+..-+..+|+-+|++..... .+|+-..
T Consensus 213 ~~~~~~p~~~i~r~~~~L~L~~~v~~~A~~i~~~a~~~-~-l~~Gr~P~sIAAAaIYlA~~~~g~~~t~keIa~v----- 285 (310)
T PRK00423 213 KLPPTDPIDYVPRFASELGLSGEVQKKAIEILQKAKEK-G-LTSGKGPTGLAAAAIYIASLLLGERRTQREVAEV----- 285 (310)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-cccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH-----
Confidence 46667789999999999999998888887766666542 3 3467888999999999999877655 5555321
Q ss_pred HhCCCceeeCHHHHHHHHHHHHHh
Q 039330 143 FTLELKLHVTTEVFAKYCSQLDME 166 (205)
Q Consensus 143 ~~Ldf~L~Vs~eef~~y~~~L~~~ 166 (205)
..|+..+..+-++.|.+.
T Consensus 286 ------~~Vs~~tI~~~ykel~~~ 303 (310)
T PRK00423 286 ------AGVTEVTVRNRYKELAEK 303 (310)
T ss_pred ------cCCCHHHHHHHHHHHHHH
Confidence 357777777666666654
No 24
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=31.65 E-value=3.2e+02 Score=24.40 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330 65 KAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130 (205)
Q Consensus 65 ~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~ 130 (205)
..|.+...+|+.|+.+.-+++.++--.|.-.+++.... +.. ...+.--+-.+|+.+|++..+..
T Consensus 188 ~~~~~~p~~yi~rf~s~L~l~~~v~~~a~ei~~~~~~~-g~~-~Gk~P~glAaaaiy~as~l~~~~ 251 (285)
T COG1405 188 KIPPVDPSDYIPRFASKLGLSDEVRRKAIEIVKKAKRA-GLT-AGKSPAGLAAAAIYLASLLLGER 251 (285)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-Ccc-cCCCchhHHHHHHHHHHHHhCCc
Confidence 45557889999999999999999998888888777663 222 25566678899999999988765
No 25
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=22.33 E-value=66 Score=21.55 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=21.4
Q ss_pred HhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330 99 FLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130 (205)
Q Consensus 99 l~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~ 130 (205)
+.++.|+.-+.-++.||+- +.|.||+.|.
T Consensus 11 yL~~~G~~~~D~rv~RLvS---LaaQKFisdI 39 (51)
T PF03540_consen 11 YLERSGFQTSDPRVKRLVS---LAAQKFISDI 39 (51)
T ss_pred HHHHCCCCCCCHhHHHHHH---HHHHHHHHHH
Confidence 3345677777778888874 5789999887
Done!