Query 039330
Match_columns 205
No_of_seqs 166 out of 809
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 3.1E-34 1.1E-38 251.9 13.2 142 23-164 28-185 (293)
2 1f5q_B Gamma herpesvirus cycli 98.4 1.5E-06 5E-11 74.4 11.0 89 70-160 51-156 (252)
3 3g33_B CCND3 protein; Ser/Thr 98.3 2.1E-06 7.1E-11 75.2 9.1 88 70-159 73-177 (306)
4 2f2c_A Cyclin homolog, V-cycli 98.3 3.3E-06 1.1E-10 71.5 9.2 88 70-159 54-158 (254)
5 1g3n_C V-cyclin; cyclin-depend 98.3 5.7E-06 1.9E-10 70.2 10.7 89 70-160 53-158 (257)
6 2w96_A G1/S-specific cyclin-D1 98.2 8.8E-06 3E-10 69.6 11.0 88 70-159 59-163 (271)
7 2b9r_A Human cyclin B1; cell c 98.2 1.1E-05 3.8E-10 69.0 11.5 87 70-158 40-143 (269)
8 1w98_B Cyclin E, G1/S-specific 98.2 1.1E-05 3.8E-10 69.6 11.5 91 70-162 52-160 (283)
9 2cch_B Cyclin A2, cyclin-A; co 98.2 7.9E-06 2.7E-10 69.4 10.2 88 70-159 41-145 (260)
10 2i53_A Cyclin K; cell cycle, t 97.8 8.9E-05 3E-09 62.4 9.9 85 71-157 44-155 (258)
11 2ivx_A Cyclin-T2; transcriptio 97.8 9.6E-05 3.3E-09 62.3 9.7 85 71-157 34-150 (257)
12 1zp2_A RNA polymerase II holoe 97.7 0.00026 8.8E-09 59.0 9.9 86 70-157 30-138 (235)
13 2pk2_A Cyclin-T1, protein TAT; 97.6 8.7E-05 3E-09 66.3 6.8 84 71-156 41-156 (358)
14 3rgf_B Cyclin-C; protein kinas 97.6 0.00031 1.1E-08 60.5 10.0 91 71-163 46-168 (285)
15 1jkw_A Cyclin H; cell cycle, c 97.4 0.00087 3E-08 58.9 10.1 90 73-164 62-175 (323)
16 1c9b_A General transcription f 96.3 0.025 8.5E-07 45.8 9.7 90 72-163 9-113 (207)
17 1ais_B TFB TFIIB, protein (tra 94.5 0.22 7.6E-06 39.8 9.2 91 71-163 12-119 (200)
18 1c9b_A General transcription f 66.7 45 0.0015 26.2 11.1 97 67-176 98-196 (207)
19 1ais_B TFB TFIIB, protein (tra 60.6 43 0.0015 26.1 8.3 87 69-168 106-194 (200)
20 3k7a_M Transcription initiatio 51.1 24 0.00082 30.6 5.7 75 70-146 128-215 (345)
21 1zp2_A RNA polymerase II holoe 46.7 66 0.0022 25.8 7.4 84 71-166 134-217 (235)
22 2ivx_A Cyclin-T2; transcriptio 24.1 2E+02 0.0068 23.1 6.8 92 71-167 146-238 (257)
23 3rgf_B Cyclin-C; protein kinas 20.6 3.1E+02 0.011 22.5 7.4 57 72-130 158-214 (285)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=3.1e-34 Score=251.90 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=127.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhcCCcccc-ccccccccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Q 039330 23 KSSSTPRVLSILSSVLERSIQKNESSSKAS-KKKEVVTIFHCSKAPSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQ 101 (205)
Q Consensus 23 ~~~~~p~ll~~ia~~Le~li~~nd~~~~~~-~~~~~~t~F~~~~~P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~ 101 (205)
..-+..+++.+||.+|+++|+.||...... .....+++||+..+|+|+|++|+.||+++++|+++|+++|++||||+.+
T Consensus 28 ~~~~~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~ 107 (293)
T 2pmi_B 28 NKCSRTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQT 107 (293)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 334556799999999999999999886432 2234688999999999999999999999999999999999999999998
Q ss_pred -ccCccccccchHHHHHHHHHhhhcccccc--------------HHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHH
Q 039330 102 -RINGCLTRLNVHHLLITSFLVAAKFVDDD--------------TAEMNKLEMNFLFTLELKLHVTTEVFAKYCSQLD 164 (205)
Q Consensus 102 -~~~~~l~~~n~hRL~ltal~lAsK~~dD~--------------~~ELN~LE~~FL~~Ldf~L~Vs~eef~~y~~~L~ 164 (205)
.+++.+++.||||||++|+|+|+|||||. ++|||.||++||++|||+|+|++++|.+|+.++.
T Consensus 108 ~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~~ 185 (293)
T 2pmi_B 108 VYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQK 185 (293)
T ss_dssp HCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHSC
T ss_pred hCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHHh
Confidence 48899999999999999999999999998 9999999999999999999999999999987765
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.43 E-value=1.5e-06 Score=74.36 Aligned_cols=89 Identities=19% Similarity=0.163 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+-+++..+....+++++++-+|..|+||+..+.. +......-+-+||+.+|+|+-+-. .+|
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~--v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~ 128 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR--IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADK 128 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHH
Confidence 47789999999999999999999999999998644 345567788899999999986643 789
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLHV-TTEVFAKYC 160 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~V-s~eef~~y~ 160 (205)
+-+||+..|..|+|+|.+ ++-.|-.++
T Consensus 129 i~~mE~~IL~~L~w~l~~pTp~~FL~~~ 156 (252)
T 1f5q_B 129 LLTLEVKSLDTLSWVADRCLSTDLICYI 156 (252)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHHHH
Confidence 999999999999999984 667776544
No 3
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.31 E-value=2.1e-06 Score=75.21 Aligned_cols=88 Identities=22% Similarity=0.364 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+|+.++....+++++++-+|..|+||+..+.. +...+.+-+-+||+.+|+|+-+-. .+|
T Consensus 73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~--v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~ 150 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP--TRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQ 150 (306)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHH
Confidence 47789999999999999999999999999998643 456778899999999999985543 789
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLHV-TTEVFAKY 159 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~V-s~eef~~y 159 (205)
+-+||+..|+.|+|+|.+ ++..|-.+
T Consensus 151 i~~mE~~IL~~L~f~l~~~tp~~fl~~ 177 (306)
T 3g33_B 151 LRDWEVLVLGKLKWDLAAVIAHDFLAF 177 (306)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGGHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 999999999999999985 44445433
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.26 E-value=3.3e-06 Score=71.55 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+++..+....+++++++-+|..|+||+..+.. +...+..-+-+||+.+|+|+-+.. .+|
T Consensus 54 ~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 54 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ--GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC--cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 46789999999999999999999999999998643 456678889999999999996643 789
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLHV-TTEVFAKY 159 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~V-s~eef~~y 159 (205)
+-+||+..|+.|+|++.+ ++..|-.+
T Consensus 132 i~~mE~~IL~~L~~~l~~~tp~~fl~~ 158 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEAVLATDFLIP 158 (254)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGSHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 999999999999999984 45555443
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.26 E-value=5.7e-06 Score=70.22 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+++..+....+++++++-+|..|+||+..+.. +...+..-+-+||+.+|+|+-+-. .+|
T Consensus 53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~--v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQ--VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 46789999999999999999999999999998643 355667788899999999986642 789
Q ss_pred HHHHHHHHHHhCCCcee-eCHHHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLH-VTTEVFAKYC 160 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~-Vs~eef~~y~ 160 (205)
+-+||+..|+.|+|++. +++..|-.++
T Consensus 131 i~~mE~~iL~~L~~~l~~~tp~~fl~~~ 158 (257)
T 1g3n_C 131 LIDQEKELLEKLAWRTEAVLATDVTSFL 158 (257)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHHH
Confidence 99999999999999998 4566665544
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.22 E-value=8.8e-06 Score=69.55 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+|+.++....+++++++-+|..|+||+..+.. +...+..-+-+||+.+|+|+-+-. .+|
T Consensus 59 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 59 IVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP--VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSC--CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCC--cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence 46789999999999999999999999999998644 355678889999999999987652 789
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLHV-TTEVFAKY 159 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~V-s~eef~~y 159 (205)
+-+||+..|+.|+|++.+ ++..|-.+
T Consensus 137 I~~mE~~IL~~L~~~l~~~tp~~fl~~ 163 (271)
T 2w96_A 137 LLQMELLLVNKLKWNLAAMTPHDFIEH 163 (271)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHHH
Confidence 999999999999999984 55655543
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.22 E-value=1.1e-05 Score=69.03 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+++.++....+++++++-.|..|+||+..+.. +...+..-+-+||+.+|+|+-+.. .+|
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~e 117 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS--VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC--CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHH
Confidence 47789999999999999999999999999998644 456678899999999999986652 789
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLHV-TTEVFAK 158 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~V-s~eef~~ 158 (205)
+-+||+..|+.|+|++.+ ++..|-.
T Consensus 118 I~~mE~~IL~~L~f~l~~~tp~~fl~ 143 (269)
T 2b9r_A 118 IRQMEMKILRALNFGLGRPLPLHFLR 143 (269)
T ss_dssp HHHHHHHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 999999999999999984 5555543
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.21 E-value=1.1e-05 Score=69.64 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhc-cCccccccchHHHHHHHHHhhhcccccc----------------HH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQR-INGCLTRLNVHHLLITSFLVAAKFVDDD----------------TA 132 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~-~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~ 132 (205)
.+.+++.++....+++++++-+|..|+||+..+ .. +...+..-+-+||+.+|+|+-+.. .+
T Consensus 52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~--v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ 129 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQEN--VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCC--CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHH
Confidence 467899999999999999999999999999985 33 356778899999999999987652 78
Q ss_pred HHHHHHHHHHHhCCCcee-eCHHHHHHHHHH
Q 039330 133 EMNKLEMNFLFTLELKLH-VTTEVFAKYCSQ 162 (205)
Q Consensus 133 ELN~LE~~FL~~Ldf~L~-Vs~eef~~y~~~ 162 (205)
|+.+||+..|+.|+|+|. +++..|-.++..
T Consensus 130 ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~ 160 (283)
T 1w98_B 130 EILTMELMIMKALKWRLSPLTIVSWLNVYMQ 160 (283)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCCCCHHHHHHHHHH
Confidence 999999999999999998 466667655443
No 9
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.20 E-value=7.9e-06 Score=69.43 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc----------------HHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD----------------TAE 133 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~----------------~~E 133 (205)
.+.+|+.++....+++++++-+|..|+||+..+..+ ...+.+-+-+||+.+|+|+-+.. .+|
T Consensus 41 ~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v--~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV--LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC--CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 467999999999999999999999999999986443 45667888999999999987663 789
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHH
Q 039330 134 MNKLEMNFLFTLELKLHV-TTEVFAKY 159 (205)
Q Consensus 134 LN~LE~~FL~~Ldf~L~V-s~eef~~y 159 (205)
+-+||+..|+.|+|++.+ ++..|-.+
T Consensus 119 i~~mE~~iL~~L~~~l~~~tp~~fl~~ 145 (260)
T 2cch_B 119 VLRMEHLVLKVLTFDLAAPTVNQFLTQ 145 (260)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 999999999999999874 45555443
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=97.84 E-value=8.9e-05 Score=62.41 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------- 130 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------- 130 (205)
..+++.++....+++++++-.|..|+||+..+..+ ...+.+-+-+||+.+|+|+-+..
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF--KQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCh--hhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 56889999999999999999999999999876443 45677888899999999986532
Q ss_pred ------HHHHHHHHHHHHHhCCCceeeC-HHHHH
Q 039330 131 ------TAEMNKLEMNFLFTLELKLHVT-TEVFA 157 (205)
Q Consensus 131 ------~~ELN~LE~~FL~~Ldf~L~Vs-~eef~ 157 (205)
.+++-.||+.+|+.|+|++.+. +..|-
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl 155 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence 2588899999999999999864 55543
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=97.81 E-value=9.6e-05 Score=62.32 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------- 130 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------- 130 (205)
..+++.++....+++++++-.|..|+||+..+..+ ...+.+-+-+||+.+|+|+-+..
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~--~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSF--TKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCT--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCCh--hhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 56889999999999999999999999999986443 56778899999999999985522
Q ss_pred -----------HHHHHHHHHHHHHhCCCceee-CHHHHH
Q 039330 131 -----------TAEMNKLEMNFLFTLELKLHV-TTEVFA 157 (205)
Q Consensus 131 -----------~~ELN~LE~~FL~~Ldf~L~V-s~eef~ 157 (205)
.+++-.||+..|+.|+|++.+ ++..|-
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 468999999999999999985 455554
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.66 E-value=0.00026 Score=59.05 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccc-cchHHHHHHHHHhhhcccccc------------------
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTR-LNVHHLLITSFLVAAKFVDDD------------------ 130 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~-~n~hRL~ltal~lAsK~~dD~------------------ 130 (205)
...++|.++....+++.+++-.|..|++|+..+..+ .. .+..-+.+||+.+|+|+-+..
T Consensus 30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~--~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNE--EKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCS--CCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc--ccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 456789999999999999999999999999986443 34 678899999999999985432
Q ss_pred ---HHHHHHHHHHHHHhCCCceee-CHHHHH
Q 039330 131 ---TAEMNKLEMNFLFTLELKLHV-TTEVFA 157 (205)
Q Consensus 131 ---~~ELN~LE~~FL~~Ldf~L~V-s~eef~ 157 (205)
.+++-++|+..|+.|+|++.+ ++..|-
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l 138 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSL 138 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence 468999999999999999986 355543
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=97.62 E-value=8.7e-05 Score=66.33 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------- 130 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------- 130 (205)
+.++|.++....+++.+++-.|.+|+||+..+.. +...+.+-+-+|||.+|+|+-+..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~s--v~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS--FTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSC--TTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 5688999999999999999999999999998644 356778899999999999986532
Q ss_pred -----------HHHHHHHHHHHHHhCCCceeeC-HHHH
Q 039330 131 -----------TAEMNKLEMNFLFTLELKLHVT-TEVF 156 (205)
Q Consensus 131 -----------~~ELN~LE~~FL~~Ldf~L~Vs-~eef 156 (205)
.+++-.||+.+|+.|+|+|.+. +..|
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~f 156 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTH 156 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHH
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHH
Confidence 2467789999999999999864 4444
No 14
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.61 E-value=0.00031 Score=60.52 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------- 130 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------- 130 (205)
..++|.++....+++.+++-.|.+|++|+..+..+ ...+.+-+.++|+.+|+|+-+-.
T Consensus 46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~ 123 (285)
T 3rgf_B 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFS 123 (285)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCT--TTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCc--hhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccc
Confidence 46889999999999999999999999999986544 46778899999999999974432
Q ss_pred ----------HHHHHHHHHHHHHhCCCceeeC-HHHH-HHHHHHH
Q 039330 131 ----------TAEMNKLEMNFLFTLELKLHVT-TEVF-AKYCSQL 163 (205)
Q Consensus 131 ----------~~ELN~LE~~FL~~Ldf~L~Vs-~eef-~~y~~~L 163 (205)
.+++-++|+.+|+.|+|++.|. +..| ..|...+
T Consensus 124 ~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 124 YAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp TTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 2688999999999999999764 4443 3444444
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=97.39 E-value=0.00087 Score=58.86 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=72.1
Q ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--------------------
Q 039330 73 QYIERVFKYSR--CSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------------- 130 (205)
Q Consensus 73 ~yl~rI~~~~~--~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------------- 130 (205)
++|.++....+ ++.+++-.|.+|++|+..+..+ ...+.+-+.+||+.+|+|+=+-.
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~--~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~ 139 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSV--MEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA 139 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCT--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCCh--hhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHH
Confidence 56888888889 9999999999999999986443 46778899999999999975432
Q ss_pred HHHHHHHHHHHHHhCCCceeeC-HHHH-HHHHHHHH
Q 039330 131 TAEMNKLEMNFLFTLELKLHVT-TEVF-AKYCSQLD 164 (205)
Q Consensus 131 ~~ELN~LE~~FL~~Ldf~L~Vs-~eef-~~y~~~L~ 164 (205)
.+++-.||+..|+.|+|+|.|. +..| ..|...+.
T Consensus 140 ~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~ 175 (323)
T 1jkw_A 140 LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175 (323)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHH
Confidence 3789999999999999999864 4443 34555554
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=96.32 E-value=0.025 Score=45.81 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------HHHHHHHH
Q 039330 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------TAEMNKLE 138 (205)
Q Consensus 72 ~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------~~ELN~LE 138 (205)
.++|.++....+++..+.=.|..|++|+..+..+ ...+..-+..+|+-+|.|+-+-. .+|+.++|
T Consensus 9 ~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~--~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 9 FKEITTMADRINLPRNIVDRTNNLFKQVYEQKSL--KGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCS--TTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--CCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 5688999999999999999999999999986443 46678889999999999985543 78999999
Q ss_pred HHHHHhCCCceeeC-H-HHHHHHHHHH
Q 039330 139 MNFLFTLELKLHVT-T-EVFAKYCSQL 163 (205)
Q Consensus 139 ~~FL~~Ldf~L~Vs-~-eef~~y~~~L 163 (205)
+.+|+.|+|++.+. + ....+|+..|
T Consensus 87 ~~ll~~L~~~l~~~~p~~~l~r~~~~l 113 (207)
T 1c9b_A 87 KLILKALETSVDLITTGDFMSRFCSNL 113 (207)
T ss_dssp HHHHHHTTCCCCCCCTHHHHHHHHHHT
T ss_pred HHHHHHHCCCcCcCCHHHHHHHHHHHC
Confidence 99999999998653 2 3334444443
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.51 E-value=0.22 Score=39.78 Aligned_cols=91 Identities=9% Similarity=0.053 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------HHHHHHH
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------TAEMNKL 137 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------~~ELN~L 137 (205)
-.+++.++....+++..+.=.|..|.+|+..+..+ ...+..-+..+|+-+|.|..+.. .+|+.+.
T Consensus 12 a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~--~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~ 89 (200)
T 1ais_B 12 ALSELDRITAQLKLPRHVEEEAARLYREAVRKGLI--RGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRS 89 (200)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTT--TTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc--CCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHH
Confidence 46789999999999999999999999999886432 45567888999999999986643 7899999
Q ss_pred HHHHHHhCCCceee---CHHHH-HHHHHHH
Q 039330 138 EMNFLFTLELKLHV---TTEVF-AKYCSQL 163 (205)
Q Consensus 138 E~~FL~~Ldf~L~V---s~eef-~~y~~~L 163 (205)
|+.+++.|+|++.+ ++..| .+|+..|
T Consensus 90 ~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L 119 (200)
T 1ais_B 90 YRFIARNLNLTPKKLFVKPTDYVNKFADEL 119 (200)
T ss_dssp HHHHHHHTTCCTTTTCCCGGGGHHHHHHHH
T ss_pred HHHHHHHhcccCCcCCCCHHHHHHHHHHHc
Confidence 99999999999774 44444 4555544
No 18
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=66.71 E-value=45 Score=26.17 Aligned_cols=97 Identities=5% Similarity=-0.010 Sum_probs=70.3
Q ss_pred CcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--HHHHHHHHHHHHHh
Q 039330 67 PSLSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--TAEMNKLEMNFLFT 144 (205)
Q Consensus 67 P~isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--~~ELN~LE~~FL~~ 144 (205)
|...-.+|+.|+.+..+++.++.-.|...+.+... .++ ....+.+-+-.+|+-+|++..+.. .+|+..
T Consensus 98 ~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~-~~l-~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~-------- 167 (207)
T 1c9b_A 98 DLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVE-LDL-VPGRSPISVAAAAIYMASQASAEKRTQKEIGD-------- 167 (207)
T ss_dssp CCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTC-STTCCHHHHHHHHHHHHHHTSSSCCCHHHHHH--------
T ss_pred CcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCc-cCCCChHHHHHHHHHHHHHHHCCCCCHHHHHH--------
Confidence 34455899999999999998887777766666554 232 356788999999999999987654 555521
Q ss_pred CCCceeeCHHHHHHHHHHHHHhhhhccccccc
Q 039330 145 LELKLHVTTEVFAKYCSQLDMEGAAAEEWWVT 176 (205)
Q Consensus 145 Ldf~L~Vs~eef~~y~~~L~~~~~~~~~~~~~ 176 (205)
-..|++.+..+.++.|.+.....-.-||.
T Consensus 168 ---~~~v~~~tI~~~~~~l~~~l~~~~p~~~~ 196 (207)
T 1c9b_A 168 ---IAGVADVTIRQSYRLIYPRAPDLFPTDFK 196 (207)
T ss_dssp ---HHTCCHHHHHHHHHHHGGGHHHHSCSSCC
T ss_pred ---HhCCCHHHHHHHHHHHHHHHHHhChHHHc
Confidence 24589999999998888776654333443
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=60.64 E-value=43 Score=26.07 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc--HHHHHHHHHHHHHhCC
Q 039330 69 LSIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD--TAEMNKLEMNFLFTLE 146 (205)
Q Consensus 69 isi~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~--~~ELN~LE~~FL~~Ld 146 (205)
++-.+|+.|+.+..+++.++--.|..++.+.... ++ ....+..-+-.+|+-+|++..... .+|+...
T Consensus 106 ~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~-~~-~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~--------- 174 (200)
T 1ais_B 106 VKPTDYVNKFADELGLSEKVRRRAIEILDEAYKR-GL-TSGKSPAGLVAAALYIASLLEGEKRTQREVAEV--------- 174 (200)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT-TC-CTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH---------
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc-Cc-ccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHH---------
Confidence 5668999999999999999888888777776653 22 356788899999999999987655 5555321
Q ss_pred CceeeCHHHHHHHHHHHHHhhh
Q 039330 147 LKLHVTTEVFAKYCSQLDMEGA 168 (205)
Q Consensus 147 f~L~Vs~eef~~y~~~L~~~~~ 168 (205)
..|++.+..+.++.|.+.+.
T Consensus 175 --~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 175 --ARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp --HTCCHHHHHHHHHHHHHHHT
T ss_pred --hCCCHHHHHHHHHHHHHHcC
Confidence 33788888888878776543
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=51.10 E-value=24 Score=30.61 Aligned_cols=75 Identities=11% Similarity=-0.037 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc-------------HHHHHH
Q 039330 70 SIRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD-------------TAEMNK 136 (205)
Q Consensus 70 si~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~-------------~~ELN~ 136 (205)
....+|.++....+++..+.=.|..|..|+..+..+ ...+..-+..+|+.+|.|.-.-. .+|+.+
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~--kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr 205 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTL--KGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGK 205 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSS--CCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--cCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHH
Confidence 445788999999999999999999999998775433 45566788889999999954332 788999
Q ss_pred HHHHHHHhCC
Q 039330 137 LEMNFLFTLE 146 (205)
Q Consensus 137 LE~~FL~~Ld 146 (205)
.++.+++.|+
T Consensus 206 ~~~~l~~~L~ 215 (345)
T 3k7a_M 206 TLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999888
No 21
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=46.72 E-value=66 Score=25.80 Aligned_cols=84 Identities=8% Similarity=0.043 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhccccccHHHHHHHHHHHHHhCCCcee
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDTAEMNKLEMNFLFTLELKLH 150 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~~~ELN~LE~~FL~~Ldf~L~ 150 (205)
-.+|+.++.+..+.+.+..-.|..++....... . .-.....-+-.+|+.+|.+..+..... +... |. .
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~-~-~l~~~Ps~IAaAai~lA~~~~~~~~~~----~~~~-----~~-~ 201 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASS-L-CLMAHPHQLAYAALLISCCNDENTIPK----LLDL-----IK-S 201 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTT-G-GGTSCHHHHHHHHHHHHHTSCTTHHHH----HHHH-----CC-H
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-c-hhccCHHHHHHHHHHHHHHhcCCCCCC----Ccch-----hh-c
Confidence 368999999988999988888887777765432 2 235567889999999999987643210 1111 22 7
Q ss_pred eCHHHHHHHHHHHHHh
Q 039330 151 VTTEVFAKYCSQLDME 166 (205)
Q Consensus 151 Vs~eef~~y~~~L~~~ 166 (205)
++.++....+..+...
T Consensus 202 ~~~~~i~~~~~~i~~l 217 (235)
T 1zp2_A 202 TDAFKVILCVQRIISI 217 (235)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888888754
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=24.10 E-value=2e+02 Score=23.08 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhccccccH-HHHHHHHHHHHHhCCCce
Q 039330 71 IRQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDDT-AEMNKLEMNFLFTLELKL 149 (205)
Q Consensus 71 i~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~~-~ELN~LE~~FL~~Ldf~L 149 (205)
-.+|+.++.+..+.+.+..-.|..++.......... -....+-+-++|+.+|.+..+-.. ..-+ +..+... |..
T Consensus 146 P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~-l~~~Ps~IAaAai~lA~~~~~~~~p~~~~--~~~W~~~--~~~ 220 (257)
T 2ivx_A 146 PHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFC-LQYKPTVIACVCIHLACKWSNWEIPVSTD--GKHWWEY--VDP 220 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGG-GTSCHHHHHHHHHHHHHHHHTCCCCCCTT--CCCGGGG--TCS
T ss_pred cHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHH-HcCCHHHHHHHHHHHHHHHhCCCCCCCCC--CchHHHH--hCC
Confidence 468999999999999888777877775544322322 245678899999999998765220 0000 0011111 122
Q ss_pred eeCHHHHHHHHHHHHHhh
Q 039330 150 HVTTEVFAKYCSQLDMEG 167 (205)
Q Consensus 150 ~Vs~eef~~y~~~L~~~~ 167 (205)
.++.++....+..+....
T Consensus 221 ~~~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 221 TVTLELLDELTHEFLQIL 238 (257)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 467888887777777543
No 23
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=20.59 E-value=3.1e+02 Score=22.54 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCccccccchHHHHHHHHHhhhcccccc
Q 039330 72 RQYIERVFKYSRCSPSCFIVAYIYLDRFLQRINGCLTRLNVHHLLITSFLVAAKFVDDD 130 (205)
Q Consensus 72 ~~yl~rI~~~~~~s~~~~v~ALiYidRl~~~~~~~l~~~n~hRL~ltal~lAsK~~dD~ 130 (205)
++|+.++.+..+.+....-.|..++......+ . .-....+-+-++|+.+|.+..+..
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~-~-~l~~~Ps~IAaAaiylA~~~~~~~ 214 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTD-L-CLLYPPFMIALACLHVACVVQQKD 214 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-H-HHHSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC-h-hhccCHHHHHHHHHHHHHHHcCCC
Confidence 68999999998988888888877777654422 2 224567889999999999987753
Done!