BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039334
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 96/257 (37%), Gaps = 81/257 (31%)
Query: 472 ASSLKSNPDELFDGMAQLQSLNLSRCPMXXXXXXXXXXXX-RFLILRQCSCLEYMPSLKE 530
A+ L PD A L++L L+R P+ R L +R C P L E
Sbjct: 113 AAGLXELPDT-XQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC------PELTE 165
Query: 531 LHE-LEIIDLSGATXXXXXXXXXXXXHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGC 589
L E L D SG NLQ + L +T I LP
Sbjct: 166 LPEPLASTDASGEHQGL----------VNLQSLRLEWTGIRSLPAS-------------- 201
Query: 590 RKLHILPSFQKLHSLKILD--LSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSA 647
+ + Q L SLKI + LS +G P+ LP L EL LR C+A
Sbjct: 202 -----IANLQNLKSLKIRNSPLSALG-----------PAIHHLP----KLEELDLRGCTA 241
Query: 648 LEHLPLT----TALKNLELLDLSNTNLKKLPSEXXXXXXXXXXXXXXXXXXPEMKGLEKL 703
L + P LK L L D SN L LP + + L +L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSN--LLTLPLD--------------------IHRLTQL 279
Query: 704 EELRLSGCINLTELPNL 720
E+L L GC+NL+ LP+L
Sbjct: 280 EKLDLRGCVNLSRLPSL 296
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 414 FNLMPKLQVLAI----FKPTFKSLMSSSFERLTVLVLRNCDMLEDI--TGIKELKTLSVL 467
FN + L+VL + F+ F + + LT L L C LE + T L +L VL
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499
Query: 468 EISGASSLKSNPDELFDGMAQLQSLNLSRCP 498
++ ++ LKS PD +FD + LQ + L P
Sbjct: 500 NMA-SNQLKSVPDGIFDRLTSLQKIWLHTNP 529
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 67/160 (41%), Gaps = 37/160 (23%)
Query: 597 SFQKLHSLKILDLSEV-----------GFSNFTEIKLKDPSTQQLP---FLPCS-LSELY 641
SF+ L L+IL LS G +N ++L D +P F+ S L EL+
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142
Query: 642 LRKCSALEHLP--LTTALKNLELLDLSNTNLKKLPSEXXXXXXXXXXXXXXXXXXPEMKG 699
LR + +E +P + +L LDL LK+L +G
Sbjct: 143 LRN-NPIESIPSYAFNRIPSLRRLDLGE--LKRL----------------SYISEGAFEG 183
Query: 700 LEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIREI 739
L L L L+ C NL E+PNL KLD LD+S + I
Sbjct: 184 LSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAI 222
>pdb|1ZOS|A Chain A, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|B Chain B, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|C Chain C, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|D Chain D, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|E Chain E, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
pdb|1ZOS|F Chain F, Structure Of 5'-MethylthionadenosineS-Adenosylhomocysteine
Nucleosidase From S. Pneumoniae With A Transition-State
Inhibitor Mt-Imma
Length = 230
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 107 MATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRT 166
+A QE + +N+HL L G + + N+ ++ S F P+ L + M
Sbjct: 126 VAQIQESLSQLDQNWHLGLIATGDSFVAGNDKIEAIKSHF--------PEVLAVEMEGAA 177
Query: 167 TKQSGKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMIAKAL 223
Q+ + P + ++ ++H+ + EFI E GRRS + KAL
Sbjct: 178 IAQAAHTLNLPVLVIRA-----MSDNANHEANIFFDEFIIEAGRRSAQVLLAFLKAL 229
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 414 FNLMPKLQVLAIFKPTFKSLMSSSFE---RLTVLVLRNCDMLEDIT--GIKELKTLSVLE 468
FN +P L L +F ++ + +FE +L L LRN + +E I + +L L+
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLD 137
Query: 469 ISGASSLKSNPDELFDGMAQLQSLNLSRC 497
+ L+ + F+G+ L+ LNL C
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMC 166
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 414 FNLMPKLQVLAIFKPTFKSLMSSSFERLTVLV-LR-NCDMLEDIT--GIKELKTLSVLEI 469
F+ + +L L + KSL S F+RLT L LR N + L+ I +L L L +
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 470 SGASSLKSNPDELFDGMAQLQSLNL-------SRC 497
S + L+S P FD + +LQ++ L SRC
Sbjct: 163 S-TNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 414 FNLMPKLQVLAIFKPTFKSLMSSSFERLTVLV-LR-NCDMLEDIT--GIKELKTLSVLEI 469
F+ + +L L + KSL S F+RLT L LR N + L+ I +L L L +
Sbjct: 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162
Query: 470 SGASSLKSNPDELFDGMAQLQSLNL-------SRC 497
S + L+S P FD + +LQ++ L SRC
Sbjct: 163 S-TNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 575 FTDLKHLSRILL--RGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPF 632
F +LK L+R+ L R L++ PSF KL+SLK +D S E +L+ + L F
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 633 LPCSLSELYLR 643
+ + LY R
Sbjct: 179 FSLAANSLYSR 189
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 414 FNLMPKLQVLAIFKPTFKSLMSSSFE---RLTVLVLRNCDMLEDIT--GIKELKTLSVLE 468
FN +P L L +F ++ + +FE +L L LRN + +E I + +L L+
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLD 137
Query: 469 ISGASSLKSNPDELFDGMAQLQSLNLSRC 497
+ L+ + F+G+ L+ LNL C
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMC 166
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 697 MKGLEKLEELRLSGCINLTEL--PNLNDFPKLDLLDISNTGIREIPDEILELSRPKIIRE 754
L KL E+R+ NL + + P L L ISNTGI+ +PD S K++ +
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134
Query: 755 VDEETN 760
+ + N
Sbjct: 135 IQDNIN 140
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 43/166 (25%)
Query: 575 FTDLKHLSRILLRGCRKLHILPSFQKLHSLK--ILDLSE------------VGFSNFTEI 620
F +L +L +L+ H LP K+HSL+ +LD+ + VG S + I
Sbjct: 100 FQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158
Query: 621 -KLKDPSTQQL---PFLPCSLSELYLRKCSALEHLP--LTTALKNLELLDLSNTNLKKLP 674
L Q++ F L EL L + LE LP + +LD+S T + LP
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 675 SEXXXXXXXXXXXXXXXXXXPEMKGLEKLEELRLSGCINLTELPNL 720
S GLE L++LR NL +LP L
Sbjct: 219 S----------------------YGLENLKKLRARSTYNLKKLPTL 242
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 697 MKGLEKLEELRLSGCINLTEL--PNLNDFPKLDLLDISNTGIREIPDEILELSRPKIIRE 754
L KL E+R+ NL + + P L L ISNTGI+ +PD S K++ +
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134
Query: 755 VDEETN 760
+ + N
Sbjct: 135 IQDNIN 140
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 396 LTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSSSFERLTVL--VLRNCDMLE 453
LT L G + + FN + L L + +SL + F++LT L + N + L+
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Query: 454 DITG-----IKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498
+ + +LK L + + + LKS PD +FD + LQ + L P
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQ----NQLKSVPDGVFDRLTSLQYIWLHDNP 159
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 452 LEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494
L DI+ +KEL L+ L ++G + L+S P+ +FD + L+ L L
Sbjct: 75 LHDISALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVL 116
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 452 LEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494
L DI+ +KEL L+ L ++G + L+S P+ +FD + L+ L L
Sbjct: 75 LHDISALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVL 116
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 637 LSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLP--SEXXXXXXXXXXXXXXXXXX 694
L++L L +C L L + L L LDLS+ L+ LP +
Sbjct: 57 LTQLNLDRCE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 695 P--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDEIL 744
P ++GL +L+EL L G L LP L PKL+ L ++N + E+P +L
Sbjct: 116 PLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 637 LSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLP--SEXXXXXXXXXXXXXXXXXX 694
L++L L +C L L + L L LDLS+ L+ LP +
Sbjct: 57 LTQLNLDRCE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 695 P--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDEIL 744
P ++GL +L+EL L G L LP L PKL+ L ++N + E+P +L
Sbjct: 116 PLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLL 168
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 637 LSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLP--SEXXXXXXXXXXXXXXXXXX 694
L++L L +C L L + L L LDLS+ L+ LP +
Sbjct: 58 LTQLNLDRCE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 695 P--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDEIL 744
P ++GL +L+EL L G L LP L PKL+ L ++N + E+P +L
Sbjct: 117 PLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,360,170
Number of Sequences: 62578
Number of extensions: 781604
Number of successful extensions: 2191
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 100
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)