Query 039334
Match_columns 782
No_of_seqs 323 out of 4699
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-71 4.2E-76 634.2 27.8 598 4-671 161-783 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.4E-60 7.4E-65 573.3 49.6 648 2-735 185-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.6E-41 7.9E-46 350.5 16.3 269 8-302 2-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 2.6E-28 5.6E-33 296.7 26.2 362 390-766 90-491 (968)
5 PLN00113 leucine-rich repeat r 100.0 3.7E-27 8E-32 286.6 25.1 367 393-765 140-562 (968)
6 KOG4194 Membrane glycoprotein 99.9 9.3E-28 2E-32 246.8 9.1 340 419-772 79-438 (873)
7 KOG4194 Membrane glycoprotein 99.9 4.7E-27 1E-31 241.6 4.8 346 393-753 78-445 (873)
8 KOG0444 Cytoskeletal regulator 99.9 7.9E-27 1.7E-31 241.2 -4.4 356 393-767 7-379 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 6.2E-25 1.3E-29 227.3 -5.6 302 416-735 53-373 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 9.5E-26 2.1E-30 222.4 -11.1 336 417-770 136-547 (565)
11 PLN03210 Resistant to P. syrin 99.9 9.2E-21 2E-25 230.5 27.4 336 409-760 549-903 (1153)
12 KOG0472 Leucine-rich repeat pr 99.8 5.3E-24 1.1E-28 210.1 -11.0 374 391-773 66-528 (565)
13 KOG0618 Serine/threonine phosp 99.8 3.5E-22 7.5E-27 217.1 -1.9 200 556-761 240-487 (1081)
14 KOG0618 Serine/threonine phosp 99.8 7.1E-21 1.5E-25 207.0 -5.2 353 395-766 23-468 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 1.9E-17 4.1E-22 186.7 19.6 263 439-743 201-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.4E-17 3E-22 187.9 18.3 255 418-712 201-456 (788)
17 KOG4237 Extracellular matrix p 99.6 1.6E-16 3.5E-21 157.6 -2.2 241 394-645 68-356 (498)
18 PRK15370 E3 ubiquitin-protein 99.6 2.5E-14 5.3E-19 163.0 13.6 243 462-737 178-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 3.5E-14 7.7E-19 161.7 14.1 239 420-712 180-426 (754)
20 KOG4237 Extracellular matrix p 99.5 7.1E-16 1.5E-20 153.0 -1.3 260 419-689 68-357 (498)
21 KOG0617 Ras suppressor protein 99.3 4E-14 8.6E-19 124.5 -5.3 153 417-573 32-189 (264)
22 KOG0617 Ras suppressor protein 99.3 4.7E-14 1E-18 124.0 -5.5 159 437-599 31-193 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.3 3.2E-12 7E-17 148.1 6.8 150 437-588 521-677 (889)
24 cd00116 LRR_RI Leucine-rich re 99.1 8.8E-12 1.9E-16 132.0 -1.0 198 398-616 3-235 (319)
25 cd00116 LRR_RI Leucine-rich re 99.1 4.9E-12 1.1E-16 134.0 -3.7 37 700-737 249-291 (319)
26 PRK04841 transcriptional regul 99.1 7.7E-09 1.7E-13 125.8 22.5 294 11-350 19-328 (903)
27 TIGR03015 pepcterm_ATPase puta 99.0 7.6E-09 1.6E-13 106.4 17.9 194 9-223 26-242 (269)
28 PF05729 NACHT: NACHT domain 98.9 5.7E-09 1.2E-13 98.7 11.1 149 24-194 1-165 (166)
29 KOG1259 Nischarin, modulator o 98.9 4.6E-10 1E-14 108.0 1.3 37 484-520 211-248 (490)
30 TIGR00635 ruvB Holliday juncti 98.9 6.3E-08 1.4E-12 101.4 16.6 268 2-331 5-289 (305)
31 PF01637 Arch_ATPase: Archaeal 98.9 8.8E-09 1.9E-13 103.6 9.8 204 4-217 2-232 (234)
32 PF14580 LRR_9: Leucine-rich r 98.8 2.9E-09 6.4E-14 99.0 4.0 121 417-540 18-148 (175)
33 KOG3207 Beta-tubulin folding c 98.8 6.6E-10 1.4E-14 112.8 -0.7 183 390-573 118-317 (505)
34 PRK00080 ruvB Holliday junctio 98.8 1.3E-07 2.9E-12 99.6 16.7 149 158-332 152-311 (328)
35 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.3E-14 98.2 2.7 120 636-758 20-151 (175)
36 PRK13342 recombination factor 98.7 1.9E-07 4.1E-12 101.5 14.8 168 2-221 13-198 (413)
37 COG4886 Leucine-rich repeat (L 98.7 2.5E-08 5.5E-13 108.7 8.0 173 556-767 115-294 (394)
38 PRK00411 cdc6 cell division co 98.7 3.9E-07 8.4E-12 99.3 17.0 289 3-331 32-358 (394)
39 KOG3207 Beta-tubulin folding c 98.7 5.8E-09 1.3E-13 106.0 1.7 181 390-571 143-340 (505)
40 TIGR02928 orc1/cdc6 family rep 98.7 5.5E-06 1.2E-10 89.3 24.8 296 2-331 16-350 (365)
41 COG2256 MGS1 ATPase related to 98.7 1.8E-07 4E-12 94.9 11.8 152 12-214 37-207 (436)
42 PRK06893 DNA replication initi 98.7 6.7E-07 1.5E-11 88.7 15.8 150 22-221 38-205 (229)
43 KOG0532 Leucine-rich repeat (L 98.6 1.6E-09 3.4E-14 113.5 -4.0 186 560-760 78-270 (722)
44 PRK04195 replication factor C 98.6 6.5E-06 1.4E-10 91.4 23.5 240 2-301 15-271 (482)
45 KOG0532 Leucine-rich repeat (L 98.6 1.7E-09 3.7E-14 113.2 -4.8 164 421-590 78-245 (722)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.5E-06 3.3E-11 86.7 16.4 163 9-222 24-204 (226)
47 KOG2028 ATPase related to the 98.6 2.6E-07 5.6E-12 91.8 10.3 165 2-213 139-330 (554)
48 COG2909 MalT ATP-dependent tra 98.6 3E-06 6.5E-11 94.2 19.6 296 11-350 24-334 (894)
49 COG4886 Leucine-rich repeat (L 98.6 5.6E-08 1.2E-12 106.0 5.7 171 417-591 115-289 (394)
50 KOG1259 Nischarin, modulator o 98.6 2E-08 4.4E-13 96.9 1.8 223 505-742 178-417 (490)
51 PRK05564 DNA polymerase III su 98.6 2.3E-06 5E-11 89.6 17.3 172 2-217 5-188 (313)
52 KOG4341 F-box protein containi 98.5 2E-09 4.3E-14 108.8 -6.4 285 439-753 138-458 (483)
53 PRK14961 DNA polymerase III su 98.5 5.3E-06 1.1E-10 88.5 17.6 193 2-218 17-219 (363)
54 PRK14963 DNA polymerase III su 98.5 4.8E-06 1E-10 91.7 17.0 190 2-216 15-214 (504)
55 PRK14949 DNA polymerase III su 98.5 4.6E-06 9.9E-11 94.9 17.0 176 2-219 17-220 (944)
56 PRK14960 DNA polymerase III su 98.4 5.5E-06 1.2E-10 91.4 16.4 193 2-218 16-218 (702)
57 KOG1909 Ran GTPase-activating 98.4 2E-08 4.2E-13 99.6 -2.5 230 437-689 28-309 (382)
58 PRK12402 replication factor C 98.4 1.1E-05 2.4E-10 86.0 18.1 196 2-218 16-225 (337)
59 PRK07003 DNA polymerase III su 98.4 9.4E-06 2E-10 90.6 17.6 193 2-218 17-220 (830)
60 PRK12323 DNA polymerase III su 98.4 6.4E-06 1.4E-10 90.6 15.7 197 2-219 17-225 (700)
61 PRK06645 DNA polymerase III su 98.4 7.4E-06 1.6E-10 89.8 16.1 194 2-216 22-226 (507)
62 PLN03025 replication factor C 98.4 1.2E-05 2.6E-10 84.4 16.3 174 2-216 14-197 (319)
63 PRK14964 DNA polymerase III su 98.3 1.1E-05 2.4E-10 87.6 16.0 174 2-217 14-215 (491)
64 KOG0531 Protein phosphatase 1, 98.3 9.2E-08 2E-12 104.4 0.1 127 485-615 70-199 (414)
65 PRK14956 DNA polymerase III su 98.3 9.7E-06 2.1E-10 87.0 15.3 191 2-216 19-219 (484)
66 cd01128 rho_factor Transcripti 98.3 8.6E-07 1.9E-11 88.1 6.6 98 22-130 15-114 (249)
67 PRK08084 DNA replication initi 98.3 1.6E-05 3.5E-10 79.2 15.5 165 9-223 31-213 (235)
68 PRK08727 hypothetical protein; 98.3 1.9E-05 4E-10 78.7 15.6 144 23-216 41-201 (233)
69 PF13173 AAA_14: AAA domain 98.3 1.5E-06 3.3E-11 77.7 6.8 115 23-184 2-127 (128)
70 PRK13341 recombination factor 98.3 9.3E-06 2E-10 93.0 14.6 162 2-214 29-212 (725)
71 PRK14957 DNA polymerase III su 98.3 2.4E-05 5.2E-10 86.3 16.9 177 2-220 17-222 (546)
72 PRK08691 DNA polymerase III su 98.3 1.8E-05 3.9E-10 88.3 15.7 175 2-218 17-219 (709)
73 PF05496 RuvB_N: Holliday junc 98.3 3.3E-05 7.2E-10 73.6 15.1 168 2-215 25-217 (233)
74 PRK14958 DNA polymerase III su 98.3 2.3E-05 5E-10 86.6 16.3 175 2-218 17-219 (509)
75 KOG1909 Ran GTPase-activating 98.2 2.2E-07 4.8E-12 92.3 0.3 242 456-712 24-309 (382)
76 PRK00440 rfc replication facto 98.2 5.3E-05 1.1E-09 80.0 18.4 173 2-217 18-201 (319)
77 PF13855 LRR_8: Leucine rich r 98.2 4.9E-07 1.1E-11 68.8 2.0 58 462-520 1-60 (61)
78 PF13401 AAA_22: AAA domain; P 98.2 4.2E-06 9.1E-11 75.4 8.4 120 23-166 4-125 (131)
79 PRK09376 rho transcription ter 98.2 1.8E-06 3.9E-11 89.2 6.5 96 24-130 170-267 (416)
80 PRK07940 DNA polymerase III su 98.2 3.9E-05 8.4E-10 81.8 16.9 170 2-217 6-211 (394)
81 TIGR00678 holB DNA polymerase 98.2 3.5E-05 7.6E-10 74.2 15.2 158 12-214 2-186 (188)
82 PRK09112 DNA polymerase III su 98.2 3.3E-05 7.1E-10 81.2 16.1 205 2-219 24-240 (351)
83 TIGR01242 26Sp45 26S proteasom 98.2 1.6E-05 3.4E-10 85.2 13.7 173 2-213 123-328 (364)
84 PF00308 Bac_DnaA: Bacterial d 98.2 5.7E-05 1.2E-09 74.2 16.5 159 24-220 35-209 (219)
85 PRK07994 DNA polymerase III su 98.2 3.3E-05 7.2E-10 86.6 16.5 194 2-219 17-220 (647)
86 cd00009 AAA The AAA+ (ATPases 98.2 7.5E-06 1.6E-10 75.4 9.8 55 9-66 5-59 (151)
87 PRK14962 DNA polymerase III su 98.2 3E-05 6.5E-10 84.7 15.8 180 2-223 15-223 (472)
88 KOG0531 Protein phosphatase 1, 98.2 2.6E-07 5.7E-12 100.9 -0.4 214 530-764 70-291 (414)
89 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 66.9 3.0 59 701-762 1-61 (61)
90 KOG4341 F-box protein containi 98.2 4E-08 8.7E-13 99.5 -6.3 220 529-756 187-435 (483)
91 PRK15386 type III secretion pr 98.2 7.6E-06 1.7E-10 85.6 10.0 55 554-611 49-103 (426)
92 TIGR02397 dnaX_nterm DNA polym 98.2 6.5E-05 1.4E-09 80.6 17.6 176 2-220 15-219 (355)
93 PRK03992 proteasome-activating 98.2 1.8E-05 3.9E-10 85.0 13.0 172 2-212 132-336 (389)
94 KOG2982 Uncharacterized conser 98.2 6.3E-07 1.4E-11 86.9 1.6 214 397-610 49-287 (418)
95 PRK14951 DNA polymerase III su 98.2 5.1E-05 1.1E-09 84.9 16.6 195 2-219 17-225 (618)
96 PRK08903 DnaA regulatory inact 98.2 6.8E-05 1.5E-09 74.7 15.9 161 9-224 27-204 (227)
97 PRK05896 DNA polymerase III su 98.1 5.5E-05 1.2E-09 83.6 16.2 191 2-216 17-217 (605)
98 PRK14955 DNA polymerase III su 98.1 4.8E-05 1E-09 82.2 15.3 200 2-218 17-227 (397)
99 PRK07471 DNA polymerase III su 98.1 0.00013 2.8E-09 77.2 17.2 204 2-219 20-238 (365)
100 PRK07764 DNA polymerase III su 98.1 6.5E-05 1.4E-09 87.3 16.0 194 2-217 16-219 (824)
101 PRK05642 DNA replication initi 98.1 9.9E-05 2.2E-09 73.4 14.8 150 24-223 46-212 (234)
102 TIGR02903 spore_lon_C ATP-depe 98.1 5.5E-05 1.2E-09 85.9 14.5 206 2-223 155-399 (615)
103 PRK14969 DNA polymerase III su 98.0 0.00012 2.6E-09 81.5 16.8 173 2-216 17-217 (527)
104 TIGR00767 rho transcription te 98.0 8E-06 1.7E-10 85.0 6.9 97 23-130 168-266 (415)
105 PRK14970 DNA polymerase III su 98.0 0.00017 3.8E-09 77.5 17.6 173 2-216 18-206 (367)
106 PRK15386 type III secretion pr 98.0 2.1E-05 4.5E-10 82.5 10.0 164 575-766 48-222 (426)
107 KOG2982 Uncharacterized conser 98.0 1.1E-06 2.4E-11 85.2 0.4 84 484-567 68-156 (418)
108 PRK09087 hypothetical protein; 98.0 0.00015 3.3E-09 71.5 15.5 138 23-221 44-197 (226)
109 PRK09111 DNA polymerase III su 98.0 0.00016 3.6E-09 81.1 17.5 199 2-219 25-233 (598)
110 PRK14952 DNA polymerase III su 98.0 0.00012 2.6E-09 81.7 16.1 199 2-222 14-223 (584)
111 PRK14953 DNA polymerase III su 98.0 0.00023 5E-09 78.3 17.0 177 2-220 17-221 (486)
112 KOG2120 SCF ubiquitin ligase, 98.0 2.2E-07 4.8E-12 90.0 -5.8 154 437-590 208-374 (419)
113 PRK07133 DNA polymerase III su 98.0 0.00022 4.7E-09 80.7 16.6 187 2-219 19-219 (725)
114 PHA02544 44 clamp loader, smal 97.9 0.00018 3.9E-09 75.8 14.8 142 2-190 22-171 (316)
115 PRK08451 DNA polymerase III su 97.9 0.00047 1E-08 75.9 18.3 175 2-219 15-218 (535)
116 PRK06305 DNA polymerase III su 97.9 0.00024 5.2E-09 77.6 16.1 171 2-215 18-218 (451)
117 PRK14950 DNA polymerase III su 97.9 0.00028 6.1E-09 80.1 17.1 195 2-219 17-221 (585)
118 KOG2120 SCF ubiquitin ligase, 97.9 4.2E-07 9.1E-12 88.1 -4.7 174 394-567 186-373 (419)
119 PF13191 AAA_16: AAA ATPase do 97.9 1.7E-05 3.7E-10 76.3 6.3 43 3-46 2-47 (185)
120 PRK14959 DNA polymerase III su 97.9 0.0002 4.4E-09 79.7 15.2 198 2-223 17-225 (624)
121 PTZ00454 26S protease regulato 97.9 0.00012 2.5E-09 78.4 13.0 174 2-213 146-351 (398)
122 PRK14954 DNA polymerase III su 97.9 0.00025 5.4E-09 79.8 16.2 196 2-214 17-223 (620)
123 PTZ00112 origin recognition co 97.9 0.00018 3.9E-09 81.1 14.4 200 4-224 758-987 (1164)
124 PRK14087 dnaA chromosomal repl 97.9 0.00016 3.4E-09 79.0 13.6 164 24-223 142-323 (450)
125 COG1222 RPT1 ATP-dependent 26S 97.9 0.00056 1.2E-08 69.0 16.0 190 2-229 152-377 (406)
126 PLN03150 hypothetical protein; 97.9 3.6E-05 7.8E-10 88.2 8.7 102 441-543 420-526 (623)
127 PRK14971 DNA polymerase III su 97.9 0.00048 1E-08 78.1 17.4 173 2-217 18-220 (614)
128 PTZ00361 26 proteosome regulat 97.9 0.00012 2.6E-09 78.8 12.0 172 2-212 184-388 (438)
129 TIGR03689 pup_AAA proteasome A 97.8 0.0005 1.1E-08 75.2 15.7 167 2-194 183-380 (512)
130 PRK06647 DNA polymerase III su 97.8 0.00045 9.7E-09 77.3 15.7 193 2-218 17-219 (563)
131 PLN03150 hypothetical protein; 97.8 7.5E-05 1.6E-09 85.6 9.8 107 419-526 419-532 (623)
132 KOG1859 Leucine-rich repeat pr 97.8 1.7E-07 3.6E-12 101.2 -11.0 121 557-689 164-290 (1096)
133 COG3899 Predicted ATPase [Gene 97.8 0.00042 9.1E-09 81.7 15.3 278 3-293 2-333 (849)
134 PRK14965 DNA polymerase III su 97.8 0.00065 1.4E-08 76.8 16.2 194 2-219 17-221 (576)
135 TIGR00362 DnaA chromosomal rep 97.7 0.00079 1.7E-08 73.4 16.3 154 24-217 137-308 (405)
136 PRK11331 5-methylcytosine-spec 97.7 5.1E-05 1.1E-09 80.6 6.4 62 9-73 182-243 (459)
137 PRK14948 DNA polymerase III su 97.7 0.001 2.3E-08 75.3 17.2 196 2-219 17-222 (620)
138 PRK06620 hypothetical protein; 97.6 0.0011 2.3E-08 64.8 14.1 86 121-216 87-186 (214)
139 PRK05563 DNA polymerase III su 97.6 0.0018 4E-08 72.8 17.5 192 2-217 17-218 (559)
140 PRK08116 hypothetical protein; 97.6 0.00026 5.5E-09 71.8 9.5 106 25-167 116-221 (268)
141 KOG1859 Leucine-rich repeat pr 97.6 2.1E-06 4.6E-11 92.9 -5.8 57 484-542 206-264 (1096)
142 PRK05707 DNA polymerase III su 97.6 0.0021 4.4E-08 67.2 16.3 91 118-218 105-202 (328)
143 PRK14088 dnaA chromosomal repl 97.6 0.001 2.2E-08 72.7 14.5 151 24-214 131-300 (440)
144 KOG4579 Leucine-rich repeat (L 97.6 5.6E-06 1.2E-10 71.1 -2.4 84 680-768 55-141 (177)
145 PF00004 AAA: ATPase family as 97.6 0.00026 5.5E-09 63.7 8.2 21 26-46 1-21 (132)
146 CHL00176 ftsH cell division pr 97.6 0.00097 2.1E-08 75.7 14.3 173 2-212 184-387 (638)
147 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00035 7.5E-09 82.4 11.2 44 2-46 188-231 (852)
148 PRK00149 dnaA chromosomal repl 97.6 0.0016 3.5E-08 71.9 15.9 153 24-216 149-319 (450)
149 TIGR02881 spore_V_K stage V sp 97.6 0.00076 1.6E-08 68.6 12.3 45 2-46 7-65 (261)
150 PF12799 LRR_4: Leucine Rich r 97.6 7.5E-05 1.6E-09 51.9 3.2 40 724-766 1-40 (44)
151 PRK08118 topology modulation p 97.6 5.3E-05 1.1E-09 71.0 3.3 35 25-59 3-37 (167)
152 TIGR01241 FtsH_fam ATP-depende 97.6 0.00066 1.4E-08 75.9 12.5 179 2-218 56-266 (495)
153 PF12799 LRR_4: Leucine Rich r 97.5 7E-05 1.5E-09 52.1 3.0 39 463-503 2-40 (44)
154 KOG3665 ZYG-1-like serine/thre 97.5 2.3E-05 5E-10 89.4 0.7 107 389-498 118-231 (699)
155 PRK12422 chromosomal replicati 97.5 0.0016 3.4E-08 71.0 14.7 150 24-213 142-307 (445)
156 KOG0989 Replication factor C, 97.5 0.0007 1.5E-08 66.9 10.6 170 9-214 43-225 (346)
157 KOG0991 Replication factor C, 97.5 0.00073 1.6E-08 63.7 10.1 63 2-66 28-90 (333)
158 COG1474 CDC6 Cdc6-related prot 97.5 0.002 4.3E-08 68.2 14.8 161 8-190 23-201 (366)
159 PRK14086 dnaA chromosomal repl 97.5 0.0018 3.9E-08 72.0 14.8 155 24-216 315-485 (617)
160 PTZ00202 tuzin; Provisional 97.5 0.00046 9.9E-09 72.2 9.3 158 2-190 263-432 (550)
161 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 66.5 5.5 105 437-543 40-151 (233)
162 PRK07399 DNA polymerase III su 97.5 0.0067 1.4E-07 63.0 17.9 195 2-218 5-220 (314)
163 PRK08769 DNA polymerase III su 97.5 0.0016 3.5E-08 67.2 13.1 181 9-217 11-206 (319)
164 PLN00020 ribulose bisphosphate 97.5 0.003 6.6E-08 65.0 14.7 175 23-238 148-355 (413)
165 KOG3665 ZYG-1-like serine/thre 97.4 6.2E-05 1.3E-09 86.0 2.5 124 417-543 121-261 (699)
166 KOG1644 U2-associated snRNP A' 97.4 0.00027 5.9E-09 65.4 6.0 97 636-734 43-150 (233)
167 PF14516 AAA_35: AAA-like doma 97.4 0.0056 1.2E-07 64.4 16.8 200 13-226 22-246 (331)
168 KOG2543 Origin recognition com 97.4 0.00068 1.5E-08 68.9 9.2 172 7-194 11-195 (438)
169 PRK06526 transposase; Provisio 97.4 0.00032 7E-09 70.3 6.9 24 23-46 98-121 (254)
170 CHL00181 cbbX CbbX; Provisiona 97.4 0.0015 3.2E-08 67.0 11.8 133 25-191 61-208 (287)
171 PRK09183 transposase/IS protei 97.4 0.00083 1.8E-08 67.8 9.6 24 23-46 102-125 (259)
172 TIGR02880 cbbX_cfxQ probable R 97.4 0.0039 8.4E-08 64.0 14.6 71 121-192 123-208 (284)
173 PRK12377 putative replication 97.4 0.00037 8E-09 69.3 6.9 37 23-62 101-137 (248)
174 PF05621 TniB: Bacterial TniB 97.4 0.0016 3.4E-08 65.5 11.2 194 4-216 37-258 (302)
175 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0049 1.1E-07 62.6 15.2 55 10-72 10-64 (262)
176 PF02562 PhoH: PhoH-like prote 97.4 0.0007 1.5E-08 64.8 8.2 50 9-61 7-56 (205)
177 PRK08058 DNA polymerase III su 97.3 0.0065 1.4E-07 63.9 16.0 45 2-46 6-51 (329)
178 COG3267 ExeA Type II secretory 97.3 0.0069 1.5E-07 58.7 14.5 180 19-221 47-247 (269)
179 PRK08181 transposase; Validate 97.3 0.00053 1.2E-08 69.1 7.1 42 16-62 101-142 (269)
180 PF01695 IstB_IS21: IstB-like 97.3 0.0011 2.4E-08 62.7 8.8 37 23-62 47-83 (178)
181 PF05673 DUF815: Protein of un 97.3 0.0022 4.8E-08 62.3 10.9 44 2-46 28-75 (249)
182 COG3903 Predicted ATPase [Gene 97.3 0.00046 9.9E-09 71.3 6.4 223 23-281 14-255 (414)
183 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0079 1.7E-07 66.1 16.4 152 24-213 260-429 (489)
184 COG0593 DnaA ATPase involved i 97.3 0.0055 1.2E-07 64.7 14.3 151 23-212 113-279 (408)
185 TIGR01243 CDC48 AAA family ATP 97.2 0.0037 8E-08 73.6 14.2 174 2-213 454-657 (733)
186 PF04665 Pox_A32: Poxvirus A32 97.2 0.0013 2.9E-08 64.4 8.6 35 25-62 15-49 (241)
187 PRK06871 DNA polymerase III su 97.2 0.016 3.6E-07 60.0 16.8 183 10-216 10-200 (325)
188 KOG0734 AAA+-type ATPase conta 97.2 0.00066 1.4E-08 71.7 6.3 48 2-49 305-363 (752)
189 TIGR02639 ClpA ATP-dependent C 97.2 0.0024 5.2E-08 74.9 11.7 44 2-46 183-226 (731)
190 TIGR01243 CDC48 AAA family ATP 97.2 0.0041 8.9E-08 73.2 13.7 44 2-46 179-235 (733)
191 PF13177 DNA_pol3_delta2: DNA 97.2 0.008 1.7E-07 55.9 12.9 38 9-46 4-42 (162)
192 COG2255 RuvB Holliday junction 97.2 0.014 3E-07 57.4 14.5 65 158-225 153-226 (332)
193 PRK08939 primosomal protein Dn 97.1 0.0022 4.8E-08 66.2 9.5 106 23-167 156-261 (306)
194 PRK06921 hypothetical protein; 97.1 0.003 6.6E-08 63.9 9.9 39 22-62 116-154 (266)
195 PHA00729 NTP-binding motif con 97.1 0.0035 7.5E-08 60.7 9.7 33 14-46 8-40 (226)
196 PRK12608 transcription termina 97.0 0.0019 4E-08 67.3 8.0 107 12-129 121-230 (380)
197 smart00382 AAA ATPases associa 97.0 0.0026 5.5E-08 57.7 8.3 40 24-66 3-42 (148)
198 PRK06090 DNA polymerase III su 97.0 0.029 6.2E-07 58.1 16.5 182 9-217 10-199 (319)
199 PRK06835 DNA replication prote 97.0 0.0015 3.2E-08 68.0 6.9 37 23-62 183-219 (329)
200 PRK10536 hypothetical protein; 97.0 0.0026 5.5E-08 62.7 8.0 36 9-46 62-97 (262)
201 PRK10865 protein disaggregatio 97.0 0.0028 6E-08 75.2 9.6 44 2-46 179-222 (857)
202 CHL00095 clpC Clp protease ATP 96.9 0.002 4.4E-08 76.4 8.4 44 2-46 180-223 (821)
203 PRK07993 DNA polymerase III su 96.9 0.032 6.9E-07 58.5 16.3 185 9-216 9-201 (334)
204 KOG4579 Leucine-rich repeat (L 96.9 4.9E-05 1.1E-09 65.5 -3.8 99 420-520 29-134 (177)
205 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00091 2E-08 69.3 4.6 58 2-60 52-119 (361)
206 PRK07952 DNA replication prote 96.9 0.0079 1.7E-07 59.7 11.1 37 23-62 99-135 (244)
207 COG2607 Predicted ATPase (AAA+ 96.9 0.0085 1.8E-07 57.3 10.5 117 2-167 61-183 (287)
208 PF10443 RNA12: RNA12 protein; 96.9 0.013 2.8E-07 61.7 12.8 109 118-229 147-288 (431)
209 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0033 7.1E-08 74.9 9.6 44 2-46 174-217 (852)
210 PRK07261 topology modulation p 96.9 0.0015 3.2E-08 61.6 5.3 35 25-59 2-36 (171)
211 PF13604 AAA_30: AAA domain; P 96.9 0.006 1.3E-07 58.9 9.6 39 7-46 3-41 (196)
212 COG1484 DnaC DNA replication p 96.8 0.0043 9.4E-08 62.3 8.6 82 22-137 104-185 (254)
213 KOG2739 Leucine-rich acidic nu 96.8 0.00086 1.9E-08 64.9 3.1 109 654-763 39-159 (260)
214 PRK11034 clpA ATP-dependent Cl 96.8 0.008 1.7E-07 69.7 11.4 43 3-46 188-230 (758)
215 TIGR00602 rad24 checkpoint pro 96.8 0.0089 1.9E-07 67.5 11.0 38 9-46 91-133 (637)
216 TIGR00763 lon ATP-dependent pr 96.7 0.0084 1.8E-07 70.8 11.2 44 2-46 321-370 (775)
217 PF13207 AAA_17: AAA domain; P 96.7 0.0011 2.5E-08 58.4 3.0 22 25-46 1-22 (121)
218 COG1875 NYN ribonuclease and A 96.7 0.0036 7.8E-08 63.5 6.4 36 11-46 233-268 (436)
219 COG5238 RNA1 Ran GTPase-activa 96.7 0.00032 7E-09 67.7 -1.0 188 438-645 29-252 (388)
220 KOG2035 Replication factor C, 96.7 0.093 2E-06 51.4 15.5 169 9-213 20-222 (351)
221 COG1373 Predicted ATPase (AAA+ 96.6 0.013 2.9E-07 63.1 11.1 113 25-187 39-162 (398)
222 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0059 1.3E-07 61.1 7.7 56 23-79 19-77 (235)
223 KOG2123 Uncharacterized conser 96.6 0.00016 3.4E-09 70.0 -3.6 77 636-714 20-101 (388)
224 COG0466 Lon ATP-dependent Lon 96.6 0.0041 9E-08 68.7 6.6 60 5-71 327-392 (782)
225 KOG0729 26S proteasome regulat 96.6 0.015 3.3E-07 56.1 9.5 38 9-46 184-234 (435)
226 COG0470 HolB ATPase involved i 96.5 0.018 3.9E-07 60.9 11.0 44 2-46 2-47 (325)
227 KOG0733 Nuclear AAA ATPase (VC 96.4 0.057 1.2E-06 58.7 13.8 91 2-130 191-293 (802)
228 KOG0731 AAA+-type ATPase conta 96.4 0.04 8.6E-07 62.4 13.3 48 2-49 312-370 (774)
229 PRK04132 replication factor C 96.4 0.081 1.8E-06 61.7 16.3 148 29-217 570-729 (846)
230 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0072 1.6E-07 60.5 6.7 101 24-129 70-173 (274)
231 KOG0741 AAA+-type ATPase [Post 96.4 0.018 3.8E-07 61.3 9.6 147 25-209 540-704 (744)
232 TIGR02639 ClpA ATP-dependent C 96.4 0.034 7.5E-07 65.3 13.3 43 3-46 456-507 (731)
233 KOG2227 Pre-initiation complex 96.4 0.1 2.3E-06 55.0 15.1 183 3-212 152-361 (529)
234 TIGR02902 spore_lonB ATP-depen 96.4 0.068 1.5E-06 60.1 15.1 44 2-46 66-109 (531)
235 KOG0735 AAA+-type ATPase [Post 96.4 0.027 5.9E-07 62.1 11.2 158 25-217 433-614 (952)
236 PRK15455 PrkA family serine pr 96.4 0.0034 7.3E-08 68.5 4.3 44 2-46 77-126 (644)
237 KOG2123 Uncharacterized conser 96.3 0.00019 4.1E-09 69.5 -5.0 78 458-538 37-123 (388)
238 COG0464 SpoVK ATPases of the A 96.3 0.046 9.9E-07 61.4 13.0 150 23-211 276-445 (494)
239 COG2812 DnaX DNA polymerase II 96.3 0.029 6.4E-07 61.2 10.8 191 2-216 17-217 (515)
240 KOG0743 AAA+-type ATPase [Post 96.2 0.051 1.1E-06 57.3 11.7 45 2-46 201-258 (457)
241 PRK10787 DNA-binding ATP-depen 96.2 0.021 4.6E-07 66.8 9.9 44 2-46 323-372 (784)
242 cd01120 RecA-like_NTPases RecA 96.2 0.015 3.3E-07 54.2 7.3 40 25-67 1-40 (165)
243 PRK06964 DNA polymerase III su 96.2 0.07 1.5E-06 55.8 12.7 87 117-217 130-223 (342)
244 KOG2739 Leucine-rich acidic nu 96.1 0.0024 5.2E-08 61.9 1.5 35 486-520 64-102 (260)
245 PRK09361 radB DNA repair and r 96.1 0.017 3.6E-07 57.4 7.4 44 23-70 23-66 (225)
246 KOG0727 26S proteasome regulat 96.0 0.04 8.7E-07 52.9 9.1 44 2-46 156-212 (408)
247 KOG0739 AAA+-type ATPase [Post 96.0 0.012 2.7E-07 57.8 5.8 174 2-213 134-335 (439)
248 TIGR03346 chaperone_ClpB ATP-d 96.0 0.021 4.5E-07 68.2 9.1 43 3-46 567-618 (852)
249 cd01393 recA_like RecA is a b 96.0 0.02 4.2E-07 57.0 7.6 55 23-78 19-76 (226)
250 PRK06547 hypothetical protein; 96.0 0.0093 2E-07 56.0 4.7 33 14-46 6-38 (172)
251 COG5238 RNA1 Ran GTPase-activa 95.9 0.0066 1.4E-07 58.9 3.6 81 392-472 29-130 (388)
252 KOG2004 Mitochondrial ATP-depe 95.9 0.015 3.2E-07 64.2 6.6 60 5-71 415-480 (906)
253 PF14532 Sigma54_activ_2: Sigm 95.9 0.011 2.4E-07 53.5 4.8 38 9-46 5-44 (138)
254 TIGR03345 VI_ClpV1 type VI sec 95.9 0.017 3.6E-07 68.5 7.4 43 3-46 568-619 (852)
255 PF12775 AAA_7: P-loop contain 95.9 0.017 3.6E-07 58.8 6.5 35 11-46 22-56 (272)
256 PRK10733 hflB ATP-dependent me 95.9 0.071 1.5E-06 61.5 12.2 22 25-46 187-208 (644)
257 PRK06696 uridine kinase; Valid 95.9 0.011 2.3E-07 58.6 4.9 37 10-46 6-45 (223)
258 PRK10865 protein disaggregatio 95.8 0.031 6.6E-07 66.5 9.1 43 3-46 570-621 (857)
259 PRK07667 uridine kinase; Provi 95.8 0.012 2.5E-07 56.8 4.7 36 11-46 3-40 (193)
260 KOG1969 DNA replication checkp 95.8 0.021 4.6E-07 63.2 6.9 71 24-131 327-399 (877)
261 KOG2228 Origin recognition com 95.8 0.09 2E-06 53.1 10.6 174 3-190 26-217 (408)
262 cd01131 PilT Pilus retraction 95.8 0.027 5.9E-07 54.5 7.1 23 24-46 2-24 (198)
263 PF00448 SRP54: SRP54-type pro 95.7 0.016 3.5E-07 55.7 5.3 56 23-82 1-58 (196)
264 COG1618 Predicted nucleotide k 95.7 0.0076 1.6E-07 53.9 2.7 22 25-46 7-28 (179)
265 PF12780 AAA_8: P-loop contain 95.7 0.036 7.9E-07 55.9 7.9 65 1-73 8-75 (268)
266 KOG0744 AAA+-type ATPase [Post 95.6 0.017 3.7E-07 57.6 5.1 27 24-50 178-204 (423)
267 KOG0730 AAA+-type ATPase [Post 95.6 0.075 1.6E-06 58.5 10.4 24 23-46 468-491 (693)
268 PF00485 PRK: Phosphoribulokin 95.6 0.0087 1.9E-07 57.8 3.0 22 25-46 1-22 (194)
269 PHA02774 E1; Provisional 95.6 0.068 1.5E-06 58.7 10.0 46 12-62 422-468 (613)
270 PF13238 AAA_18: AAA domain; P 95.6 0.0085 1.8E-07 53.4 2.8 21 26-46 1-21 (129)
271 PRK09270 nucleoside triphospha 95.6 0.016 3.4E-07 57.6 4.9 26 21-46 31-56 (229)
272 cd02019 NK Nucleoside/nucleoti 95.6 0.0094 2E-07 46.3 2.6 22 25-46 1-22 (69)
273 CHL00095 clpC Clp protease ATP 95.6 0.03 6.6E-07 66.6 8.1 43 3-46 511-562 (821)
274 KOG0726 26S proteasome regulat 95.4 0.063 1.4E-06 52.8 8.1 44 2-46 186-242 (440)
275 PRK05480 uridine/cytidine kina 95.4 0.012 2.7E-07 57.6 3.5 25 22-46 5-29 (209)
276 cd03281 ABC_MSH5_euk MutS5 hom 95.4 0.023 4.9E-07 55.6 5.2 24 23-46 29-52 (213)
277 PRK14722 flhF flagellar biosyn 95.4 0.047 1E-06 57.6 7.8 57 23-81 137-195 (374)
278 PRK06002 fliI flagellum-specif 95.4 0.029 6.2E-07 60.3 6.2 98 24-129 166-264 (450)
279 cd01135 V_A-ATPase_B V/A-type 95.4 0.051 1.1E-06 54.4 7.6 104 24-130 70-177 (276)
280 PF13306 LRR_5: Leucine rich r 95.4 0.04 8.7E-07 49.0 6.3 100 458-565 8-111 (129)
281 PRK08233 hypothetical protein; 95.3 0.013 2.9E-07 55.9 3.3 24 23-46 3-26 (182)
282 COG0542 clpA ATP-binding subun 95.3 0.063 1.4E-06 61.3 9.0 43 3-46 493-544 (786)
283 cd00983 recA RecA is a bacter 95.3 0.025 5.5E-07 58.3 5.5 43 23-68 55-97 (325)
284 PRK06217 hypothetical protein; 95.3 0.026 5.7E-07 53.9 5.2 36 25-60 3-38 (183)
285 COG0465 HflB ATP-dependent Zn 95.3 0.025 5.4E-07 62.7 5.5 49 1-49 150-209 (596)
286 PRK09354 recA recombinase A; P 95.3 0.027 5.9E-07 58.6 5.5 43 23-68 60-102 (349)
287 PF13671 AAA_33: AAA domain; P 95.3 0.014 3E-07 53.2 3.0 22 25-46 1-22 (143)
288 TIGR00235 udk uridine kinase. 95.2 0.014 3E-07 57.0 3.0 24 23-46 6-29 (207)
289 PRK11034 clpA ATP-dependent Cl 95.2 0.052 1.1E-06 63.1 8.0 43 3-46 460-511 (758)
290 PTZ00301 uridine kinase; Provi 95.2 0.016 3.4E-07 56.3 3.3 24 23-46 3-26 (210)
291 PF03308 ArgK: ArgK protein; 95.2 0.046 9.9E-07 53.7 6.2 64 10-74 14-79 (266)
292 TIGR00150 HI0065_YjeE ATPase, 95.1 0.032 6.9E-07 49.4 4.7 38 9-46 6-45 (133)
293 KOG0728 26S proteasome regulat 95.1 0.43 9.3E-06 46.0 12.4 148 5-190 151-329 (404)
294 TIGR02012 tigrfam_recA protein 95.1 0.034 7.3E-07 57.4 5.6 44 23-69 55-98 (321)
295 PRK06762 hypothetical protein; 95.1 0.017 3.6E-07 54.2 3.2 23 24-46 3-25 (166)
296 PRK08972 fliI flagellum-specif 95.1 0.053 1.1E-06 58.1 7.1 97 24-129 163-262 (444)
297 PF00006 ATP-synt_ab: ATP synt 95.1 0.063 1.4E-06 52.2 7.0 97 24-129 16-115 (215)
298 PRK03839 putative kinase; Prov 95.0 0.016 3.6E-07 55.1 2.9 22 25-46 2-23 (180)
299 PF07693 KAP_NTPase: KAP famil 95.0 0.77 1.7E-05 48.4 16.0 71 11-81 5-82 (325)
300 TIGR01360 aden_kin_iso1 adenyl 95.0 0.018 3.9E-07 55.3 3.2 25 22-46 2-26 (188)
301 PRK04296 thymidine kinase; Pro 95.0 0.07 1.5E-06 51.2 7.1 23 24-46 3-25 (190)
302 cd00544 CobU Adenosylcobinamid 95.0 0.038 8.2E-07 51.6 5.0 45 26-77 2-46 (169)
303 KOG0736 Peroxisome assembly fa 95.0 0.058 1.3E-06 60.2 7.1 44 2-46 673-728 (953)
304 PRK05541 adenylylsulfate kinas 94.9 0.027 5.8E-07 53.5 4.0 35 23-60 7-41 (176)
305 KOG1947 Leucine rich repeat pr 94.9 0.003 6.5E-08 71.0 -3.0 229 438-693 187-442 (482)
306 PRK05800 cobU adenosylcobinami 94.9 0.042 9.2E-07 51.4 5.1 22 25-46 3-24 (170)
307 TIGR02237 recomb_radB DNA repa 94.8 0.051 1.1E-06 53.2 5.8 46 23-72 12-57 (209)
308 PRK08149 ATP synthase SpaL; Va 94.8 0.079 1.7E-06 56.9 7.4 98 24-130 152-252 (428)
309 TIGR02858 spore_III_AA stage I 94.8 0.26 5.7E-06 49.9 10.8 36 11-46 98-134 (270)
310 cd03222 ABC_RNaseL_inhibitor T 94.7 0.19 4.2E-06 47.3 9.2 24 23-46 25-48 (177)
311 PF11868 DUF3388: Protein of u 94.7 0.11 2.5E-06 46.1 6.9 50 6-65 33-88 (192)
312 PF08423 Rad51: Rad51; InterP 94.7 0.12 2.5E-06 52.2 8.2 55 25-80 40-97 (256)
313 TIGR03499 FlhF flagellar biosy 94.7 0.085 1.8E-06 54.1 7.4 39 23-62 194-232 (282)
314 PRK10463 hydrogenase nickel in 94.7 0.041 8.9E-07 55.6 4.8 37 10-46 91-127 (290)
315 PRK07132 DNA polymerase III su 94.7 1.3 2.8E-05 45.6 15.8 164 11-218 5-184 (299)
316 COG0572 Udk Uridine kinase [Nu 94.7 0.027 5.8E-07 54.0 3.2 24 23-46 8-31 (218)
317 PRK08699 DNA polymerase III su 94.7 0.36 7.7E-06 50.5 11.9 23 25-47 23-45 (325)
318 cd03283 ABC_MutS-like MutS-lik 94.6 0.12 2.5E-06 50.0 7.7 23 24-46 26-48 (199)
319 PF07728 AAA_5: AAA domain (dy 94.6 0.051 1.1E-06 49.2 4.9 40 26-71 2-41 (139)
320 PRK00625 shikimate kinase; Pro 94.6 0.024 5.1E-07 53.3 2.7 22 25-46 2-23 (173)
321 cd02023 UMPK Uridine monophosp 94.6 0.022 4.7E-07 55.3 2.6 22 25-46 1-22 (198)
322 PF03193 DUF258: Protein of un 94.6 0.046 1E-06 50.1 4.5 36 8-46 23-58 (161)
323 PF13306 LRR_5: Leucine rich r 94.6 0.061 1.3E-06 47.8 5.3 84 478-566 3-90 (129)
324 PRK12597 F0F1 ATP synthase sub 94.6 0.087 1.9E-06 57.2 7.2 101 24-129 144-247 (461)
325 KOG0738 AAA+-type ATPase [Post 94.6 0.058 1.3E-06 55.4 5.4 44 2-46 213-268 (491)
326 cd02025 PanK Pantothenate kina 94.5 0.023 5E-07 55.8 2.5 22 25-46 1-22 (220)
327 KOG1514 Origin recognition com 94.5 1 2.2E-05 50.3 15.1 107 9-130 403-519 (767)
328 cd02024 NRK1 Nicotinamide ribo 94.5 0.025 5.4E-07 53.7 2.6 22 25-46 1-22 (187)
329 PRK10751 molybdopterin-guanine 94.5 0.034 7.3E-07 51.8 3.4 25 22-46 5-29 (173)
330 PRK05342 clpX ATP-dependent pr 94.5 0.064 1.4E-06 57.8 6.0 23 24-46 109-131 (412)
331 PRK04040 adenylate kinase; Pro 94.5 0.03 6.5E-07 53.5 3.1 23 24-46 3-25 (188)
332 CHL00206 ycf2 Ycf2; Provisiona 94.5 0.19 4E-06 62.5 10.3 22 25-46 1632-1653(2281)
333 PRK14974 cell division protein 94.5 0.15 3.2E-06 53.3 8.4 24 23-46 140-163 (336)
334 COG0563 Adk Adenylate kinase a 94.5 0.029 6.3E-07 52.9 2.9 22 25-46 2-23 (178)
335 PF07726 AAA_3: ATPase family 94.4 0.029 6.4E-07 48.7 2.7 27 26-55 2-28 (131)
336 PRK05703 flhF flagellar biosyn 94.4 0.22 4.7E-06 54.2 10.0 39 23-62 221-259 (424)
337 PF00910 RNA_helicase: RNA hel 94.4 0.025 5.3E-07 48.5 2.2 21 26-46 1-21 (107)
338 PRK10867 signal recognition pa 94.4 0.11 2.3E-06 56.3 7.5 24 23-46 100-123 (433)
339 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.026 5.7E-07 53.9 2.6 22 25-46 1-22 (183)
340 PF03969 AFG1_ATPase: AFG1-lik 94.4 0.12 2.5E-06 54.8 7.6 102 25-167 64-168 (362)
341 cd03216 ABC_Carb_Monos_I This 94.4 0.056 1.2E-06 50.4 4.7 24 23-46 26-49 (163)
342 PF03205 MobB: Molybdopterin g 94.4 0.034 7.3E-07 50.2 3.0 38 24-63 1-38 (140)
343 PRK11889 flhF flagellar biosyn 94.4 0.11 2.4E-06 54.6 7.1 24 23-46 241-264 (436)
344 cd03214 ABC_Iron-Siderophores_ 94.4 0.11 2.3E-06 49.5 6.6 24 23-46 25-48 (180)
345 PRK08927 fliI flagellum-specif 94.3 0.12 2.5E-06 55.8 7.4 98 23-129 158-258 (442)
346 PF00625 Guanylate_kin: Guanyl 94.3 0.058 1.3E-06 51.5 4.8 36 23-61 2-37 (183)
347 PRK00771 signal recognition pa 94.3 0.14 3E-06 55.6 8.1 55 23-81 95-151 (437)
348 PF13086 AAA_11: AAA domain; P 94.3 0.065 1.4E-06 53.4 5.5 67 8-77 4-75 (236)
349 COG3640 CooC CO dehydrogenase 94.3 0.058 1.3E-06 51.7 4.5 43 25-69 2-44 (255)
350 KOG1970 Checkpoint RAD17-RFC c 94.3 1.6 3.4E-05 47.5 15.4 42 5-46 85-133 (634)
351 TIGR02239 recomb_RAD51 DNA rep 94.3 0.14 3E-06 53.3 7.8 58 23-81 96-156 (316)
352 COG1703 ArgK Putative periplas 94.3 0.065 1.4E-06 53.4 5.0 65 12-77 38-104 (323)
353 PTZ00035 Rad51 protein; Provis 94.3 0.15 3.3E-06 53.5 8.2 58 23-81 118-178 (337)
354 PRK12726 flagellar biosynthesi 94.3 0.13 2.8E-06 53.9 7.3 56 22-81 205-262 (407)
355 TIGR02322 phosphon_PhnN phosph 94.2 0.035 7.5E-07 52.9 3.0 23 24-46 2-24 (179)
356 cd01394 radB RadB. The archaea 94.2 0.1 2.2E-06 51.4 6.5 42 23-67 19-60 (218)
357 COG1102 Cmk Cytidylate kinase 94.2 0.033 7.1E-07 50.0 2.5 43 25-81 2-44 (179)
358 COG1428 Deoxynucleoside kinase 94.2 0.034 7.4E-07 52.5 2.7 24 23-46 4-27 (216)
359 cd03223 ABCD_peroxisomal_ALDP 94.2 0.26 5.7E-06 46.1 8.8 24 23-46 27-50 (166)
360 KOG0924 mRNA splicing factor A 94.2 0.29 6.3E-06 53.9 9.9 65 10-82 360-427 (1042)
361 KOG0651 26S proteasome regulat 94.2 0.17 3.6E-06 50.6 7.5 25 25-49 168-192 (388)
362 PF08433 KTI12: Chromatin asso 94.2 0.085 1.8E-06 53.4 5.7 23 24-46 2-24 (270)
363 COG4240 Predicted kinase [Gene 94.1 0.11 2.4E-06 49.4 5.8 56 22-79 49-104 (300)
364 PF03215 Rad17: Rad17 cell cyc 94.1 0.069 1.5E-06 59.2 5.4 52 5-61 22-78 (519)
365 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.1 0.37 8E-06 43.8 9.3 24 23-46 26-49 (144)
366 PF00560 LRR_1: Leucine Rich R 94.1 0.016 3.5E-07 33.3 0.2 20 725-744 1-20 (22)
367 PF13245 AAA_19: Part of AAA d 94.1 0.057 1.2E-06 42.7 3.4 25 22-46 9-33 (76)
368 PRK12727 flagellar biosynthesi 94.1 0.12 2.5E-06 56.7 6.8 24 23-46 350-373 (559)
369 PRK06936 type III secretion sy 94.1 0.13 2.9E-06 55.2 7.2 99 23-130 162-263 (439)
370 TIGR02768 TraA_Ti Ti-type conj 94.0 0.18 3.8E-06 59.2 8.9 39 6-46 353-391 (744)
371 CHL00081 chlI Mg-protoporyphyr 94.0 0.059 1.3E-06 56.4 4.4 44 2-46 18-61 (350)
372 KOG3347 Predicted nucleotide k 94.0 0.048 1E-06 48.1 3.1 36 23-66 7-42 (176)
373 cd03230 ABC_DR_subfamily_A Thi 94.0 0.073 1.6E-06 50.3 4.8 24 23-46 26-49 (173)
374 cd02028 UMPK_like Uridine mono 94.0 0.037 8E-07 52.5 2.7 22 25-46 1-22 (179)
375 KOG0733 Nuclear AAA ATPase (VC 94.0 0.088 1.9E-06 57.3 5.6 154 25-215 547-720 (802)
376 cd03282 ABC_MSH4_euk MutS4 hom 94.0 0.11 2.5E-06 50.2 6.0 24 23-46 29-52 (204)
377 COG4088 Predicted nucleotide k 94.0 0.04 8.8E-07 51.4 2.7 23 24-46 2-24 (261)
378 KOG1051 Chaperone HSP104 and r 94.0 0.37 8.1E-06 56.1 10.9 100 3-131 564-672 (898)
379 TIGR00073 hypB hydrogenase acc 94.0 0.053 1.1E-06 53.0 3.7 30 17-46 16-45 (207)
380 COG4608 AppF ABC-type oligopep 94.0 0.14 2.9E-06 50.7 6.5 127 23-171 39-174 (268)
381 TIGR03263 guanyl_kin guanylate 94.0 0.041 8.9E-07 52.4 2.9 23 24-46 2-24 (180)
382 TIGR01817 nifA Nif-specific re 93.9 0.37 8E-06 54.7 11.1 43 3-46 198-242 (534)
383 PRK00131 aroK shikimate kinase 93.9 0.046 9.9E-07 51.7 3.2 24 23-46 4-27 (175)
384 KOG0652 26S proteasome regulat 93.9 0.92 2E-05 44.1 11.7 44 2-46 172-228 (424)
385 cd02020 CMPK Cytidine monophos 93.9 0.038 8.2E-07 50.5 2.6 22 25-46 1-22 (147)
386 PRK10875 recD exonuclease V su 93.9 0.32 6.9E-06 55.3 10.3 24 23-46 167-190 (615)
387 PRK13949 shikimate kinase; Pro 93.9 0.04 8.8E-07 51.7 2.7 22 25-46 3-24 (169)
388 PRK15429 formate hydrogenlyase 93.9 0.33 7.2E-06 56.8 10.9 43 3-46 378-422 (686)
389 PF01583 APS_kinase: Adenylyls 93.9 0.047 1E-06 49.8 3.0 23 24-46 3-25 (156)
390 TIGR02238 recomb_DMC1 meiotic 93.9 0.14 3.1E-06 53.1 6.9 57 24-81 97-156 (313)
391 cd03280 ABC_MutS2 MutS2 homolo 93.9 0.09 2E-06 51.0 5.2 23 23-45 28-50 (200)
392 TIGR00390 hslU ATP-dependent p 93.9 0.13 2.9E-06 54.5 6.6 23 24-46 48-70 (441)
393 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.15 3.2E-06 55.0 7.1 101 24-130 139-243 (449)
394 cd00227 CPT Chloramphenicol (C 93.9 0.045 9.7E-07 51.8 2.9 23 24-46 3-25 (175)
395 PRK07594 type III secretion sy 93.9 0.13 2.8E-06 55.4 6.6 99 23-130 155-256 (433)
396 COG1124 DppF ABC-type dipeptid 93.8 0.067 1.4E-06 51.7 4.0 24 23-46 33-56 (252)
397 PF00025 Arf: ADP-ribosylation 93.8 0.12 2.5E-06 49.0 5.8 33 14-46 4-37 (175)
398 PRK12724 flagellar biosynthesi 93.8 0.12 2.7E-06 54.9 6.4 24 23-46 223-246 (432)
399 PRK14530 adenylate kinase; Pro 93.8 0.044 9.5E-07 53.9 2.9 23 24-46 4-26 (215)
400 TIGR00554 panK_bact pantothena 93.8 0.065 1.4E-06 54.6 4.1 24 23-46 62-85 (290)
401 KOG0737 AAA+-type ATPase [Post 93.8 0.82 1.8E-05 47.1 11.7 33 25-63 129-161 (386)
402 COG1936 Predicted nucleotide k 93.8 0.044 9.4E-07 50.0 2.5 20 25-44 2-21 (180)
403 cd00071 GMPK Guanosine monopho 93.8 0.045 9.8E-07 49.3 2.6 22 25-46 1-22 (137)
404 cd02021 GntK Gluconate kinase 93.8 0.044 9.4E-07 50.4 2.6 22 25-46 1-22 (150)
405 PRK13947 shikimate kinase; Pro 93.7 0.046 9.9E-07 51.6 2.7 22 25-46 3-24 (171)
406 cd01134 V_A-ATPase_A V/A-type 93.7 0.14 3E-06 53.0 6.2 48 24-76 158-206 (369)
407 PF05970 PIF1: PIF1-like helic 93.7 0.19 4.2E-06 53.7 7.8 36 11-46 10-45 (364)
408 PTZ00088 adenylate kinase 1; P 93.7 0.05 1.1E-06 53.7 3.0 22 25-46 8-29 (229)
409 PRK05917 DNA polymerase III su 93.7 0.74 1.6E-05 46.8 11.4 39 9-47 4-43 (290)
410 cd01136 ATPase_flagellum-secre 93.7 0.21 4.6E-06 51.7 7.7 97 24-129 70-169 (326)
411 TIGR03498 FliI_clade3 flagella 93.7 0.15 3.4E-06 54.7 6.9 99 24-130 141-241 (418)
412 TIGR00959 ffh signal recogniti 93.6 0.21 4.6E-06 54.0 7.8 24 23-46 99-122 (428)
413 PRK00889 adenylylsulfate kinas 93.6 0.06 1.3E-06 51.0 3.4 24 23-46 4-27 (175)
414 cd00820 PEPCK_HprK Phosphoenol 93.6 0.066 1.4E-06 45.3 3.1 22 23-44 15-36 (107)
415 PRK10078 ribose 1,5-bisphospho 93.6 0.052 1.1E-06 52.0 2.9 22 25-46 4-25 (186)
416 PTZ00185 ATPase alpha subunit; 93.6 0.2 4.3E-06 54.3 7.4 103 24-130 190-300 (574)
417 PRK05688 fliI flagellum-specif 93.6 0.22 4.7E-06 53.9 7.7 99 23-130 168-269 (451)
418 PRK00300 gmk guanylate kinase; 93.6 0.053 1.2E-06 52.9 3.0 24 23-46 5-28 (205)
419 PRK13765 ATP-dependent proteas 93.5 0.12 2.7E-06 58.7 6.2 74 2-81 32-105 (637)
420 TIGR00382 clpX endopeptidase C 93.5 0.19 4.1E-06 54.0 7.2 23 24-46 117-139 (413)
421 PF08477 Miro: Miro-like prote 93.5 0.06 1.3E-06 47.1 2.9 24 25-48 1-24 (119)
422 PRK05022 anaerobic nitric oxid 93.4 0.42 9.1E-06 53.7 10.2 58 3-64 189-248 (509)
423 TIGR01069 mutS2 MutS2 family p 93.4 0.058 1.3E-06 63.1 3.4 24 23-46 322-345 (771)
424 PRK05922 type III secretion sy 93.4 0.23 5.1E-06 53.4 7.7 98 24-130 158-258 (434)
425 TIGR01425 SRP54_euk signal rec 93.4 0.2 4.4E-06 53.8 7.3 24 23-46 100-123 (429)
426 PRK12678 transcription termina 93.4 0.15 3.2E-06 56.0 6.1 95 24-129 417-513 (672)
427 PRK14737 gmk guanylate kinase; 93.4 0.073 1.6E-06 50.8 3.5 25 22-46 3-27 (186)
428 PF13504 LRR_7: Leucine rich r 93.4 0.047 1E-06 29.1 1.2 16 725-740 2-17 (17)
429 PF00158 Sigma54_activat: Sigm 93.3 0.11 2.5E-06 48.4 4.7 68 4-76 2-71 (168)
430 COG0542 clpA ATP-binding subun 93.3 0.09 1.9E-06 60.1 4.6 43 3-46 172-214 (786)
431 TIGR01040 V-ATPase_V1_B V-type 93.3 0.24 5.1E-06 53.4 7.4 103 24-129 142-257 (466)
432 cd00464 SK Shikimate kinase (S 93.3 0.061 1.3E-06 49.6 2.8 21 26-46 2-22 (154)
433 COG0194 Gmk Guanylate kinase [ 93.3 0.068 1.5E-06 49.5 3.0 23 24-46 5-27 (191)
434 PRK05439 pantothenate kinase; 93.3 0.11 2.5E-06 53.3 4.9 24 23-46 86-109 (311)
435 TIGR02030 BchI-ChlI magnesium 93.3 0.1 2.2E-06 54.7 4.6 44 2-46 5-48 (337)
436 PRK05057 aroK shikimate kinase 93.3 0.068 1.5E-06 50.3 3.1 23 24-46 5-27 (172)
437 PRK09099 type III secretion sy 93.3 0.23 5E-06 53.7 7.4 100 23-130 163-264 (441)
438 cd02027 APSK Adenosine 5'-phos 93.3 0.06 1.3E-06 49.4 2.6 22 25-46 1-22 (149)
439 cd03285 ABC_MSH2_euk MutS2 hom 93.2 0.071 1.5E-06 52.5 3.2 25 22-46 29-53 (222)
440 cd03243 ABC_MutS_homologs The 93.2 0.064 1.4E-06 52.2 2.9 24 23-46 29-52 (202)
441 PRK13407 bchI magnesium chelat 93.2 0.097 2.1E-06 54.7 4.3 44 2-46 9-52 (334)
442 cd01121 Sms Sms (bacterial rad 93.2 0.17 3.7E-06 53.8 6.2 40 23-65 82-121 (372)
443 COG0467 RAD55 RecA-superfamily 93.2 0.088 1.9E-06 53.5 4.0 41 23-66 23-63 (260)
444 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.22 4.8E-06 49.9 6.6 98 24-130 70-172 (274)
445 PRK03846 adenylylsulfate kinas 93.2 0.077 1.7E-06 51.4 3.4 25 22-46 23-47 (198)
446 PF02374 ArsA_ATPase: Anion-tr 93.1 0.11 2.4E-06 53.8 4.7 45 24-71 2-46 (305)
447 TIGR01313 therm_gnt_kin carboh 93.1 0.056 1.2E-06 50.5 2.2 21 26-46 1-21 (163)
448 TIGR01420 pilT_fam pilus retra 93.1 0.29 6.3E-06 51.9 7.9 86 22-131 121-207 (343)
449 cd01130 VirB11-like_ATPase Typ 93.1 0.12 2.5E-06 49.5 4.5 37 9-46 12-48 (186)
450 COG2019 AdkA Archaeal adenylat 93.1 0.085 1.9E-06 47.7 3.2 24 23-46 4-27 (189)
451 PRK07196 fliI flagellum-specif 93.1 0.22 4.7E-06 53.7 6.8 24 23-46 155-178 (434)
452 cd01672 TMPK Thymidine monopho 93.1 0.17 3.6E-06 49.0 5.6 22 25-46 2-23 (200)
453 TIGR01039 atpD ATP synthase, F 93.1 0.23 5E-06 53.6 7.0 102 24-130 144-248 (461)
454 PRK05201 hslU ATP-dependent pr 93.1 0.17 3.7E-06 53.7 5.9 43 3-46 17-73 (443)
455 PF03266 NTPase_1: NTPase; In 93.0 0.069 1.5E-06 49.9 2.7 22 26-47 2-23 (168)
456 PRK13975 thymidylate kinase; P 93.0 0.072 1.6E-06 51.5 2.9 23 24-46 3-25 (196)
457 PF08298 AAA_PrkA: PrkA AAA do 93.0 0.12 2.7E-06 53.2 4.7 44 2-46 62-111 (358)
458 COG1126 GlnQ ABC-type polar am 93.0 0.075 1.6E-06 50.4 2.8 35 23-61 28-62 (240)
459 TIGR00764 lon_rel lon-related 93.0 0.23 4.9E-06 56.7 7.2 74 2-81 19-92 (608)
460 PRK06793 fliI flagellum-specif 93.0 0.28 6E-06 52.9 7.4 100 23-130 156-257 (432)
461 cd03287 ABC_MSH3_euk MutS3 hom 93.0 0.16 3.6E-06 49.8 5.3 24 23-46 31-54 (222)
462 KOG0735 AAA+-type ATPase [Post 93.0 0.33 7.1E-06 54.1 7.9 44 2-46 668-724 (952)
463 PRK12723 flagellar biosynthesi 92.9 0.26 5.6E-06 52.6 7.2 58 23-81 174-234 (388)
464 TIGR00064 ftsY signal recognit 92.9 0.13 2.8E-06 52.3 4.7 37 23-62 72-108 (272)
465 TIGR00176 mobB molybdopterin-g 92.9 0.073 1.6E-06 49.0 2.6 22 25-46 1-22 (155)
466 PRK14738 gmk guanylate kinase; 92.9 0.091 2E-06 51.2 3.4 25 22-46 12-36 (206)
467 PF13521 AAA_28: AAA domain; P 92.9 0.075 1.6E-06 49.6 2.7 22 25-46 1-22 (163)
468 PRK08154 anaerobic benzoate ca 92.9 0.13 2.8E-06 53.6 4.7 42 5-46 107-156 (309)
469 PRK11388 DNA-binding transcrip 92.8 0.53 1.1E-05 54.8 10.2 43 3-46 327-371 (638)
470 TIGR01650 PD_CobS cobaltochela 92.8 0.17 3.7E-06 52.1 5.4 58 6-71 49-106 (327)
471 cd01124 KaiC KaiC is a circadi 92.8 0.095 2.1E-06 50.2 3.4 38 25-65 1-38 (187)
472 PLN02318 phosphoribulokinase/u 92.8 0.14 3E-06 56.7 4.9 26 21-46 63-88 (656)
473 PRK09280 F0F1 ATP synthase sub 92.8 0.25 5.5E-06 53.5 6.8 101 24-129 145-248 (463)
474 PRK12339 2-phosphoglycerate ki 92.8 0.095 2E-06 50.4 3.3 24 23-46 3-26 (197)
475 TIGR00708 cobA cob(I)alamin ad 92.8 0.27 5.9E-06 45.7 6.1 24 23-46 5-28 (173)
476 PRK13948 shikimate kinase; Pro 92.8 0.1 2.2E-06 49.4 3.5 25 22-46 9-33 (182)
477 PRK15453 phosphoribulokinase; 92.8 0.097 2.1E-06 52.5 3.4 25 22-46 4-28 (290)
478 TIGR03496 FliI_clade1 flagella 92.7 0.31 6.7E-06 52.5 7.3 97 24-129 138-237 (411)
479 TIGR03324 alt_F1F0_F1_al alter 92.7 0.35 7.6E-06 52.8 7.7 98 24-130 163-265 (497)
480 PF00005 ABC_tran: ABC transpo 92.6 0.092 2E-06 47.3 2.9 23 24-46 12-34 (137)
481 PRK10416 signal recognition pa 92.6 0.15 3.2E-06 53.1 4.7 24 23-46 114-137 (318)
482 COG0003 ArsA Predicted ATPase 92.6 0.15 3.3E-06 52.7 4.7 48 23-73 2-49 (322)
483 COG1116 TauB ABC-type nitrate/ 92.6 0.092 2E-06 51.2 2.9 23 24-46 30-52 (248)
484 PRK13946 shikimate kinase; Pro 92.6 0.095 2E-06 50.1 3.0 24 23-46 10-33 (184)
485 PRK04182 cytidylate kinase; Pr 92.6 0.092 2E-06 49.9 3.0 22 25-46 2-23 (180)
486 PF01078 Mg_chelatase: Magnesi 92.5 0.16 3.4E-06 48.6 4.3 42 2-46 4-45 (206)
487 PRK09825 idnK D-gluconate kina 92.5 0.099 2.1E-06 49.4 3.0 23 24-46 4-26 (176)
488 PF10662 PduV-EutP: Ethanolami 92.5 0.098 2.1E-06 46.8 2.7 24 24-47 2-25 (143)
489 PRK14527 adenylate kinase; Pro 92.5 0.1 2.2E-06 50.2 3.2 25 22-46 5-29 (191)
490 COG1223 Predicted ATPase (AAA+ 92.5 0.16 3.5E-06 49.3 4.3 44 2-46 122-174 (368)
491 PRK09519 recA DNA recombinatio 92.5 0.18 3.9E-06 58.2 5.5 51 23-81 60-110 (790)
492 PRK14723 flhF flagellar biosyn 92.4 0.46 1E-05 54.8 8.7 57 23-81 185-243 (767)
493 PLN02200 adenylate kinase fami 92.4 0.11 2.4E-06 51.6 3.3 24 23-46 43-66 (234)
494 TIGR01448 recD_rel helicase, p 92.4 0.67 1.5E-05 54.2 10.2 38 6-46 324-361 (720)
495 cd01428 ADK Adenylate kinase ( 92.4 0.087 1.9E-06 50.8 2.6 22 25-46 1-22 (194)
496 cd01122 GP4d_helicase GP4d_hel 92.4 1 2.2E-05 46.1 10.5 51 24-78 31-81 (271)
497 cd03116 MobB Molybdenum is an 92.4 0.11 2.5E-06 47.9 3.1 23 24-46 2-24 (159)
498 PF06745 KaiC: KaiC; InterPro 92.3 0.21 4.6E-06 49.5 5.3 42 23-66 19-60 (226)
499 PRK13531 regulatory ATPase Rav 92.3 0.14 3.1E-06 55.4 4.2 22 25-46 41-62 (498)
500 cd01129 PulE-GspE PulE/GspE Th 92.3 0.14 3E-06 52.0 3.9 43 3-46 61-103 (264)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-71 Score=634.25 Aligned_cols=598 Identities=21% Similarity=0.270 Sum_probs=410.0
Q ss_pred hhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCC
Q 039334 4 ERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCES 83 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 83 (782)
||.+ ..++++.+.|.+++..+++|+||||+||||||+.++|+....+.+||.+|||+||+.|+..+++.+|++.++...
T Consensus 161 VG~e-~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 VGLE-TMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred ccHH-HHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 8898 999999999988888999999999999999999999997723678999999999999999999999999988732
Q ss_pred CchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEE
Q 039334 84 PNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMT 163 (782)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivT 163 (782)
. .|.+ ...++.+..+.++ |++|||+|||||||.. ..|+.+..++|.. .+||||++|
T Consensus 240 ~---~~~~------~~~~~~~~~i~~~-----L~~krfllvLDDIW~~---------~dw~~I~~~~p~~-~~g~KvvlT 295 (889)
T KOG4658|consen 240 E---EWED------KEEDELASKLLNL-----LEGKRFLLVLDDIWEE---------VDWDKIGVPFPSR-ENGSKVVLT 295 (889)
T ss_pred c---ccch------hhHHHHHHHHHHH-----hccCceEEEEeccccc---------ccHHhcCCCCCCc-cCCeEEEEE
Confidence 1 2221 1226788899999 8999999999999976 4588899888875 478999999
Q ss_pred eeccccCC------CeeecCCCCHHHHHHHHHh-hhcc----ccchhHHHHHHHHhcCCcHHHHHHHHHHHhhccccchh
Q 039334 164 RRTTKQSG------KVIKFPSMSTEESLNLLKN-EFSD----HQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQRDSR 232 (782)
Q Consensus 164 Tr~~~~~~------~~~~l~~L~~~~~~~Lf~~-~~~~----~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~~ 232 (782)
||++.|+. ..+++..|+.+|||+||++ +++. ....+++|++++++|+|+|||++++|++|+.++..+
T Consensus 296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~-- 373 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQ-- 373 (889)
T ss_pred eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHH--
Confidence 99997765 6688999999999999999 6554 123578999999999999999999999999988764
Q ss_pred HHHHHHh---hcccc--CCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCCCCchhhHH
Q 039334 233 DLASAIG---KAAYY--EKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFEKDREVFE 307 (782)
Q Consensus 233 ~~~~~l~---~~~~~--~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~~~~~~ 307 (782)
+|.+... +.... ....+.+..+|++||++||.+ +|.||+|||+||+|| +|++++||.+|+||||+.+.+ .
T Consensus 374 eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~-~I~~e~Li~yWiaEGfi~~~~---~ 448 (889)
T KOG4658|consen 374 EWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDY-EIKKEKLIEYWIAEGFIDPLD---G 448 (889)
T ss_pred HHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCccc-ccchHHHHHHHHhccCcCccc---c
Confidence 4444443 32111 234567889999999999974 999999999999999 899999999999999998843 2
Q ss_pred HHHHHHHHHHHHHHHHhccCceeccCcceehhhhhHhhhhhhhcccccccceeee-eeeecCCCceeeeecCchhhhhhc
Q 039334 308 LEKAYRKAHGALMDLIDRGILKAQDVNIVVMEGAALNMIDSRRKGCGGIDRLRLA-SVFEKDGGTVLGRVSPLDDMIRTV 386 (782)
Q Consensus 308 ~e~~~~~~~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 386 (782)
-+.++++|..|+.+|+.++|+...........++|||++++++..+++....... .++... ......
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~------------~~~~~~ 516 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG------------VGLSEI 516 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC------------cCcccc
Confidence 3455689999999999999998766444455789999999999887663222111 122111 011112
Q ss_pred cCCcCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCc
Q 039334 387 CSPKKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLS 465 (782)
Q Consensus 387 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~ 465 (782)
+....+..++..++.+|.+....... .++.|++|-+.++.. .+.... ..|..+++|+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~~---~~~~L~tLll~~n~~-------------------~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGSS---ENPKLRTLLLQRNSD-------------------WLLEISGEFFRSLPLLR 574 (889)
T ss_pred ccccchhheeEEEEeccchhhccCCC---CCCccceEEEeecch-------------------hhhhcCHHHHhhCcceE
Confidence 23345566677777666543211110 122344443333220 011111 2366677777
Q ss_pred EEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCc-cCCCcccEEEccCCC
Q 039334 466 VLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPSL-KELHELEIIDLSGAT 543 (782)
Q Consensus 466 ~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~ 543 (782)
+||+++|..+..+|.++ +.|.+||+|+++++.++.+|. +.++..|.+|++..+.....++.+ ..|++|++|.+....
T Consensus 575 VLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred EEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777777777777776 777777777777777777777 777777777777777655556654 447777777776543
Q ss_pred -CCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCccc----EEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcc
Q 039334 544 -SLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLS----RILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFT 618 (782)
Q Consensus 544 -~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~----~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 618 (782)
.........+..+.+|+.+.+......-+..+..++.|. .+.+.++......+.+..+.+|+.|.+.++.+.+..
T Consensus 654 ~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 654 LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence 111222223344445555544333221111222233333 222333334445556777788888888776665332
Q ss_pred ccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCc
Q 039334 619 EIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLK 671 (782)
Q Consensus 619 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~ 671 (782)
........ .....+++..+.+.+|.....+.+....++|+.|.+..+...
T Consensus 734 ~~~~~~~~---~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 734 IEWEESLI---VLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred cccccccc---hhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccc
Confidence 21111000 000012445555556665665555555667777777765443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-60 Score=573.32 Aligned_cols=648 Identities=22% Similarity=0.287 Sum_probs=393.7
Q ss_pred chhhhhhhhHHHHHHHhh--cCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc---ccc-----------
Q 039334 2 DSERVASSQKEKISELLK--EDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK---AEK----------- 65 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~----------- 65 (782)
+.||.+ ++++++.+++. .+++++|+||||||+||||||+++|+. ....|+..+|+.. +..
T Consensus 185 ~~vG~~-~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~---l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 185 DFVGIE-DHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR---LSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccchH-HHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH---HhhcCCeEEEeeccccccchhhcccccccc
Confidence 578988 88899999883 346889999999999999999999997 3456888777642 111
Q ss_pred cc-hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhh
Q 039334 66 YS-SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASS 144 (782)
Q Consensus 66 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~ 144 (782)
++ ...++++++.++.... ...... ...+++. +++||+||||||||+. .. |+
T Consensus 261 ~~~~~~l~~~~l~~il~~~-------------~~~~~~-~~~~~~~-----L~~krvLLVLDdv~~~--~~-------l~ 312 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKK-------------DIKIYH-LGAMEER-----LKHRKVLIFIDDLDDQ--DV-------LD 312 (1153)
T ss_pred cchhHHHHHHHHHHHhCCC-------------CcccCC-HHHHHHH-----HhCCeEEEEEeCCCCH--HH-------HH
Confidence 01 1234444444443311 000111 1345666 7899999999999976 33 34
Q ss_pred hhhhcCCCCCCCCcEEEEEeeccccC-----CCeeecCCCCHHHHHHHHHh-hhccccch---hHHHHHHHHhcCCcHHH
Q 039334 145 DFKNLLPSVQPDHLKIIMTRRTTKQS-----GKVIKFPSMSTEESLNLLKN-EFSDHQVS---GELFEFIAEKGRRSPAA 215 (782)
Q Consensus 145 ~~~~~~p~~~~~gs~IivTTr~~~~~-----~~~~~l~~L~~~~~~~Lf~~-~~~~~~~~---~~~~~~i~~~c~glPla 215 (782)
.+..... ...+||+||||||++.++ .++|+++.|++++||+||++ ||+....+ .+++++|+++|+|+|||
T Consensus 313 ~L~~~~~-~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 313 ALAGQTQ-WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHHhhCc-cCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 4432122 123689999999998553 47899999999999999999 88765433 36899999999999999
Q ss_pred HHHHHHHHhhccccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHH
Q 039334 216 ITMIAKALKKVVQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIM 295 (782)
Q Consensus 216 i~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wia 295 (782)
++++|++|+++... +|.+.+..... .....+..+|++||++|+.+..|.||+|+|+||.++ .++ .+..|+|
T Consensus 392 l~vlgs~L~~k~~~---~W~~~l~~L~~--~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~-~~~---~v~~~l~ 462 (1153)
T PLN03210 392 LNVLGSYLRGRDKE---DWMDMLPRLRN--GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGE-KVN---DIKLLLA 462 (1153)
T ss_pred HHHHHHHHcCCCHH---HHHHHHHHHHh--CccHHHHHHHHHhhhccCccchhhhhheehhhcCCC-CHH---HHHHHHH
Confidence 99999999986543 45544443211 234578999999999998644899999999999987 453 4778888
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHhccCceeccCcceehhhhhHhhhhhhhcccccccceeeeeeeecCCCceeee
Q 039334 296 EGYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQDVNIVVMEGAALNMIDSRRKGCGGIDRLRLASVFEKDGGTVLGR 375 (782)
Q Consensus 296 egfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (782)
++.+... ..++.|++++|++.... .+.||+++++++..+...+... .....+
T Consensus 463 ~~~~~~~--------------~~l~~L~~ksLi~~~~~-----~~~MHdLl~~~~r~i~~~~~~~---------~~~r~~ 514 (1153)
T PLN03210 463 NSDLDVN--------------IGLKNLVDKSLIHVRED-----IVEMHSLLQEMGKEIVRAQSNE---------PGEREF 514 (1153)
T ss_pred hcCCCch--------------hChHHHHhcCCEEEcCC-----eEEhhhHHHHHHHHHHHhhcCC---------CCccee
Confidence 8766441 13788999999986543 3689999999987765432100 000001
Q ss_pred ecCchhhhhhccC--------------------------CcCCCCceEEEccCCCC------CCCChhhHhcCCCCceEE
Q 039334 376 VSPLDDMIRTVCS--------------------------PKKLREVLTLLIDGSRP------CEEDHSTFFNLMPKLQVL 423 (782)
Q Consensus 376 ~~~~~~~~~~l~~--------------------------~~~~~~l~~L~l~~~~~------~~~~~~~~~~~~~~L~~L 423 (782)
+....+....+.. ...+.+++.|.+..+.. ....|..+..-..+||.|
T Consensus 515 l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 515 LVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred EeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 1111111111111 23345555555533321 112233322222346666
Q ss_pred EecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC-CCC
Q 039334 424 AIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP-MKS 501 (782)
Q Consensus 424 ~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-l~~ 501 (782)
.+.++.+..+|.. .+.+|+.|++.++.+...+..+..+++|++|+++++..+..+|. ++.+++|++|++++|. +..
T Consensus 595 ~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~ 672 (1153)
T PLN03210 595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVE 672 (1153)
T ss_pred EecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccc
Confidence 6666666666555 55666666666666655555566666666666666655566654 3566666666666653 555
Q ss_pred CCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCc
Q 039334 502 LPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKH 580 (782)
Q Consensus 502 lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~ 580 (782)
+|. +.++++|+.|++++|..++.+|...++++|+.|++++|..+...+ ....+|+.|++++|.+..+|....+++
T Consensus 673 lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~i~~lP~~~~l~~ 748 (1153)
T PLN03210 673 LPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAIEEFPSNLRLEN 748 (1153)
T ss_pred cchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCccccccccccccc
Confidence 666 666666666666666656666654456666666666665433221 113456666666666666664444555
Q ss_pred ccEEEecCcCCCCC------CCC--CCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC
Q 039334 581 LSRILLRGCRKLHI------LPS--FQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP 652 (782)
Q Consensus 581 L~~L~l~~~~~~~~------~~~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~ 652 (782)
|+.|.+.++..... ++. ...+++|+.|++++|......+..+.. .++|+.|++++|..+..+|
T Consensus 749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~---------L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN---------LHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC---------CCCCCEEECCCCCCcCeeC
Confidence 66655554321111 000 112345666666554321111111110 1256666666666666555
Q ss_pred cCCCCCCCCEEEeecC-CCccccccccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEE
Q 039334 653 LTTALKNLELLDLSNT-NLKKLPSELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLL 729 (782)
Q Consensus 653 ~~~~l~~L~~L~L~~~-~l~~l~~~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L 729 (782)
....+++|+.|++++| .+..+|...++|+.|+|+++ .++.+| .+..+++|+.|++++|+.++.+|. ...+++|+.|
T Consensus 820 ~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 820 TGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred CCCCccccCEEECCCCCccccccccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 5335566666666664 34445555556666666655 445555 355566666666666666666665 5556666666
Q ss_pred eccCCC
Q 039334 730 DISNTG 735 (782)
Q Consensus 730 ~l~~~~ 735 (782)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 666664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.6e-41 Score=350.45 Aligned_cols=269 Identities=25% Similarity=0.360 Sum_probs=204.2
Q ss_pred hhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCc
Q 039334 8 SSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPN 85 (782)
Q Consensus 8 ~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (782)
+.++++|.++|.+ ++.++|+|+||||+||||||+++|++..+ +.+|+.++||.+++..+...++.+|++++......
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~-~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRI-KNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHH-CCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 4789999999977 67899999999999999999999998664 57799999999999999999999999999885321
Q ss_pred hhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEee
Q 039334 86 IEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRR 165 (782)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr 165 (782)
. ....+.......+++. ++++++||||||||+. ..|..+...+|.. ..|+|||||||
T Consensus 81 ~--------~~~~~~~~~~~~l~~~-----L~~~~~LlVlDdv~~~---------~~~~~l~~~~~~~-~~~~kilvTTR 137 (287)
T PF00931_consen 81 I--------SDPKDIEELQDQLREL-----LKDKRCLLVLDDVWDE---------EDLEELREPLPSF-SSGSKILVTTR 137 (287)
T ss_dssp S--------SCCSSHHHHHHHHHHH-----HCCTSEEEEEEEE-SH---------HHH-------HCH-HSS-EEEEEES
T ss_pred c--------ccccccccccccchhh-----hccccceeeeeeeccc---------ccccccccccccc-ccccccccccc
Confidence 1 1133445567777777 7899999999999976 2455555555543 35799999999
Q ss_pred ccccCC------CeeecCCCCHHHHHHHHHh-hhccc----cchhHHHHHHHHhcCCcHHHHHHHHHHHhhcccc-chhH
Q 039334 166 TTKQSG------KVIKFPSMSTEESLNLLKN-EFSDH----QVSGELFEFIAEKGRRSPAAITMIAKALKKVVQR-DSRD 233 (782)
Q Consensus 166 ~~~~~~------~~~~l~~L~~~~~~~Lf~~-~~~~~----~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~-~~~~ 233 (782)
+..++. ..+++++|+.+||++||++ +.... ...++.+++|+++|+|+|||++++|++|+.+... +|.+
T Consensus 138 ~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~ 217 (287)
T PF00931_consen 138 DRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEE 217 (287)
T ss_dssp CGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 997654 5799999999999999999 54433 2234689999999999999999999999776644 3333
Q ss_pred HHHHHhhccc-cCCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCCCCc
Q 039334 234 LASAIGKAAY-YEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFEKD 302 (782)
Q Consensus 234 ~~~~l~~~~~-~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~ 302 (782)
..+.+..... .......+..++.+||+.||.+ +|.||+|||+||+++ .|+++.|+++|++|||+.+.
T Consensus 218 ~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~-~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 218 ALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGV-PIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS--EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccceechhcCCcc-HHHHHhhCcCCCCCc-eECHHHHHHHHHHCCCCccc
Confidence 4444443322 1124677899999999999996 999999999999999 89999999999999999874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.6e-28 Score=296.75 Aligned_cols=362 Identities=23% Similarity=0.310 Sum_probs=258.3
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCC-CccccCCCCCcEE
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLED-ITGIKELKTLSVL 467 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L 467 (782)
...++++.|++++|.+.+.+|..++..+++|++|++++|.+.+..+. .+++|++|++++|.+... +..++++++|++|
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 45678999999999998889999888899999999999998765444 889999999999988754 4578999999999
Q ss_pred EeecCCCCCCCchHHhcCCCCccEEEccCCCCC-CCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCC
Q 039334 468 EISGASSLKSNPDELFDGMAQLQSLNLSRCPMK-SLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATS 544 (782)
Q Consensus 468 ~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~-~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 544 (782)
++++|.....+|..+ +++++|++|++++|.+. .+|. ++.+++|++|++++|.+...+|. +..+++|+.|++++|.
T Consensus 170 ~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~- 247 (968)
T PLN00113 170 DLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN- 247 (968)
T ss_pred ECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-
Confidence 999997566788876 89999999999999876 4677 99999999999999988777775 7899999999999887
Q ss_pred CCcccccccCCCCCccEEEccCCCCCC-Cc-CcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCCCccccc
Q 039334 545 LSSFQQLDFSSHTNLQMVDLSYTQIPW-LP-KFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFSNFTEIK 621 (782)
Q Consensus 545 ~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~ 621 (782)
+....+..+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.....+|. +.++++|+.|++++|.+.+..+..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 444456678889999999999988764 44 577889999999998876655554 778889999999888876543322
Q ss_pred cCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCc-cccc---cccccceeeccccccCCCCC-
Q 039334 622 LKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLK-KLPS---ELCNLRKLLLNNCLSLTKLP- 695 (782)
Q Consensus 622 ~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~-~l~~---~l~~L~~L~L~~~~~l~~l~- 695 (782)
+.. .++|+.|++++|.....+|. +..+++|+.|++++|.+. .+|. .+++|+.|++++|.....+|
T Consensus 328 ~~~---------l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 328 LTS---------LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred Hhc---------CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 221 12677777777655555554 556667777777766654 2333 33455555555554333333
Q ss_pred CCCCCCcccEEecccCCCCCCCCC-CC------------------------CCCCcCEEeccCCCCC-CCChhhhCCCCC
Q 039334 696 EMKGLEKLEELRLSGCINLTELPN-LN------------------------DFPKLDLLDISNTGIR-EIPDEILELSRP 749 (782)
Q Consensus 696 ~~~~l~~L~~L~l~~c~~l~~l~~-~~------------------------~l~~L~~L~l~~~~l~-~lp~~~~~l~~L 749 (782)
.+..+++|+.|++++|.....+|. +. .+++|+.|++++|++. .+|..+ ..
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~----~~ 474 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF----GS 474 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc----cc
Confidence 244445555555554432223333 44 4555555555555543 333322 12
Q ss_pred CcccEEeCCCCCCCCCc
Q 039334 750 KIIREVDEETNQAEDVN 766 (782)
Q Consensus 750 ~~L~~l~~~~n~~~~~~ 766 (782)
..|+.|++++|.++...
T Consensus 475 ~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 475 KRLENLDLSRNQFSGAV 491 (968)
T ss_pred ccceEEECcCCccCCcc
Confidence 45566777777776543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.7e-27 Score=286.62 Aligned_cols=367 Identities=22% Similarity=0.264 Sum_probs=174.8
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC-CccccCCCCCcEEE
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLSVLE 468 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~ 468 (782)
.++++|++++|.+.+..+.. +..+++|++|++++|.+....+. .+++|++|++++|.+... +..++++++|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 34445555554444333332 23344555555555444322221 444455555554444332 23344445555555
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCCC-CCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCC
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPMK-SLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSL 545 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~-~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 545 (782)
+++|...+.+|..+ +.+++|++|++++|.+. .+|. ++++++|+.|++++|.+.+.+|. +..+++|+.|++++|. +
T Consensus 219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l 296 (968)
T PLN00113 219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-L 296 (968)
T ss_pred CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-e
Confidence 54443333444443 44455555555544443 2333 44444455555444444333332 3444444444444443 2
Q ss_pred CcccccccCCCCCccEEEccCCCCCC-Cc-CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCcccccc
Q 039334 546 SSFQQLDFSSHTNLQMVDLSYTQIPW-LP-KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKL 622 (782)
Q Consensus 546 ~~~~~~~l~~l~~L~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~ 622 (782)
....+..+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.....+| .++.+++|+.|++++|.+.+..+..+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 22222333444444444444444332 11 23334444444444443332222 23344444444444443322111100
Q ss_pred CCC--------CC----CCCC---CCCC------------------------CccEEEecCCCCCCCCCc-CCCCCCCCE
Q 039334 623 KDP--------ST----QQLP---FLPC------------------------SLSELYLRKCSALEHLPL-TTALKNLEL 662 (782)
Q Consensus 623 ~~~--------~~----~~l~---~~~~------------------------~L~~L~l~~~~~l~~l~~-~~~l~~L~~ 662 (782)
... .. ..+| ...+ +|+.|++++|.....++. ...+++|+.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 000 00 0000 0012 444444444433333332 334555666
Q ss_pred EEeecCCCc-cccc--cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCC
Q 039334 663 LDLSNTNLK-KLPS--ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 663 L~L~~~~l~-~l~~--~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~ 737 (782)
|++++|.+. .+|. ..++|+.|++++|.....+| .+.++++|+.|++++|.....+|. +..+++|+.|++++|.++
T Consensus 457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 666655544 2332 34566677777665444555 366777888888888855556676 778888888888888877
Q ss_pred -CCChhhhCCCCCCcccEEeCCCCCCCCC
Q 039334 738 -EIPDEILELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 738 -~lp~~~~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
.+|..+.. ++.|+.|++++|+++..
T Consensus 537 ~~~p~~~~~---l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 537 GQIPASFSE---MPVLSQLDLSQNQLSGE 562 (968)
T ss_pred ccCChhHhC---cccCCEEECCCCccccc
Confidence 56666544 45566788999988853
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=9.3e-28 Score=246.77 Aligned_cols=340 Identities=20% Similarity=0.259 Sum_probs=250.7
Q ss_pred CceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 419 KLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
..++|++++|.+..+-.. .+++|+.+++..|.+...|.......||+.|+|.+|. +..+..+-+..++.|++|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhh
Confidence 456677777777666544 7778888888887777766666666778888888874 666666555778888888888
Q ss_pred CCCCCCCCC--CCCCCCCcEEEccCCCCCCCCC-CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC
Q 039334 496 RCPMKSLPS--LPKLTKLRFLILRQCSCLEYMP-SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 496 ~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 572 (782)
.|.++.+|. +..-.++++|++++|.+...-. .+..+.+|-.|.++.|+ ++..+...|.+++.|+.|++..|.+.-+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee
Confidence 888888776 6667788888888887554322 36777788888888887 6667777788888888888888877654
Q ss_pred --cCcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCC
Q 039334 573 --PKFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALE 649 (782)
Q Consensus 573 --~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 649 (782)
..|..+++|+.|.+..|.....-. .|..+.+++.|++..|.+.......+-+.. .|+.|++++|..-.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt---------~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT---------SLEQLDLSYNAIQR 307 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc---------hhhhhccchhhhhe
Confidence 367778888888888776544333 367788888888888887765543333222 78888888874322
Q ss_pred C-CCcCCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCcccEEecccCCC---CCCCCC
Q 039334 650 H-LPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCIN---LTELPN 719 (782)
Q Consensus 650 ~-l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~---l~~l~~ 719 (782)
. ...+...++|+.|+|+.|.++.+++ .+..|+.|+|+.| .+..+. .+.++++|++|+|++|.. +++...
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 2 2236777889999999998888887 6778888888888 566665 377888899999888742 233333
Q ss_pred -CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCcccccCc
Q 039334 720 -LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVNRGRGGM 772 (782)
Q Consensus 720 -~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~~~ 772 (782)
|.++++|+.|.+.||+|+.+|.. .+..|..|+.||+-+|.|-+|..++++=
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~kr--Afsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKR--AFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hhccchhhhheeecCceeeecchh--hhccCcccceecCCCCcceeeccccccc
Confidence 77889999999999999888865 4578888888999999999988877653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.7e-27 Score=241.60 Aligned_cols=346 Identities=24% Similarity=0.304 Sum_probs=283.8
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCC-ccccCCCCCcEEEe
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEI 469 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L 469 (782)
...++|++++|+++...+ .+|.++++|+.+.+..|.+..+|.. ...+|+.|+|.+|.+...- ..+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~-~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDF-EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcH-HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 456789999999886555 4567799999999999999998886 5678999999999887654 57889999999999
Q ss_pred ecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCC
Q 039334 470 SGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLS 546 (782)
Q Consensus 470 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~ 546 (782)
+.| .+..+|..-|..=.++++|+|+.|.|+.+.. +..+.+|..|.+++|.+.+..+. +++|++|+.|++..|. +.
T Consensus 157 SrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir 234 (873)
T KOG4194|consen 157 SRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR 234 (873)
T ss_pred hhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence 998 4888886555666889999999999998876 88899999999999986654444 5889999999999887 44
Q ss_pred cccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccC
Q 039334 547 SFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLK 623 (782)
Q Consensus 547 ~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~ 623 (782)
......|..+++|+.|.+..|++..+. .|-.+.+++.|+++.|.....-. ++.+++.|+.|++++|.+..+....|.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 444567888999999999999998876 47779999999999886554433 478899999999999999887766554
Q ss_pred CCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--
Q 039334 624 DPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP-- 695 (782)
Q Consensus 624 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~-- 695 (782)
. .++|++|+|++| .++.++. +..+..|++|+|+.|.+..+.. .+.+|++|+|++|...-.+.
T Consensus 315 f---------tqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 315 F---------TQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred h---------cccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 2 349999999987 5677665 7788999999999999998776 78999999999885322222
Q ss_pred --CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCC-ChhhhCCCCCCccc
Q 039334 696 --EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREI-PDEILELSRPKIIR 753 (782)
Q Consensus 696 --~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~ 753 (782)
.+.++++|++|.+.+| +++.+|. |.++++|+.|++.+|.|.++ |..+..+ .|+.|.
T Consensus 385 a~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred hhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 3778999999999998 8999998 99999999999999998866 4445555 666653
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=7.9e-27 Score=241.25 Aligned_cols=356 Identities=21% Similarity=0.289 Sum_probs=261.7
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEee
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEIS 470 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 470 (782)
+-++-+++++|.+++.....-...|++++.|.+....+..+|.. .+.+|++|++.+|.+......+..++.||.+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 34566778888877554444455688888888888888888776 7888888888888877777778888888888888
Q ss_pred cCCC-CCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEccCCCCCC
Q 039334 471 GASS-LKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLSGATSLS 546 (782)
Q Consensus 471 ~~~~-~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~ 546 (782)
.|+. -..+|+++ -.|..|.+||+++|++++.|. +..-+++-.|++++|+ ++.+|. +-+|+.|-.|++++|+. .
T Consensus 87 ~N~LKnsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL-e 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL-E 163 (1255)
T ss_pred ccccccCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh-h
Confidence 7742 23678887 568888888888888888888 8888888888888876 455665 47888888888888873 3
Q ss_pred cccccccCCCCCccEEEccCCCCCCC--cCcCCCCcccEEEecCcCCC--CCCCCCCCCCCCCEEEcccCCCCCcccccc
Q 039334 547 SFQQLDFSSHTNLQMVDLSYTQIPWL--PKFTDLKHLSRILLRGCRKL--HILPSFQKLHSLKILDLSEVGFSNFTEIKL 622 (782)
Q Consensus 547 ~~~~~~l~~l~~L~~L~l~~~~~~~l--~~~~~l~~L~~L~l~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 622 (782)
. .|..+..+.+|++|.+++|.+..+ -.+..+++|..|.+++.+.. ..++++..+.+|+.++++.|++...++.-+
T Consensus 164 ~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly 242 (1255)
T KOG0444|consen 164 M-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY 242 (1255)
T ss_pred h-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh
Confidence 3 345677788888888888876532 23344666777777775433 234457788888888888888765543322
Q ss_pred CCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc---cccccceeeccccc-cCCCCC-C
Q 039334 623 KDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS---ELCNLRKLLLNNCL-SLTKLP-E 696 (782)
Q Consensus 623 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~---~l~~L~~L~L~~~~-~l~~l~-~ 696 (782)
. ..+|+.|+|++| .++.+.. .+.-.+|++|+++.|.++.+|. .+++|++|.+.+|. ..+-+| .
T Consensus 243 ~----------l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 243 K----------LRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred h----------hhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 1 127888888887 4555544 4455689999999999999998 67788888887764 234566 5
Q ss_pred CCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCcc
Q 039334 697 MKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVNR 767 (782)
Q Consensus 697 ~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~ 767 (782)
++.+.+|+++...+| .++-+|. +..|+.|+.|.++.|++-.+|+.+--++.| +.||+++|.=-..|+
T Consensus 312 IGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l---~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDL---KVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCc---ceeeccCCcCccCCC
Confidence 888899999998877 8888888 888999999999999988899887555544 467888886555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=6.2e-25 Score=227.34 Aligned_cols=302 Identities=27% Similarity=0.377 Sum_probs=162.8
Q ss_pred CCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCC--CCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccE
Q 039334 416 LMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDM--LEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQS 491 (782)
Q Consensus 416 ~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~--~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~ 491 (782)
.+++|+.|++..|++..+-.. .++.||.+.+..|++ .+.|+.|-.+..|..|+|++|. +...|..+ ..-.++-+
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~L-E~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNL-EYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhh-hhhcCcEE
Confidence 355555555555554433222 455555555555443 2334555555555555555553 55555554 55555555
Q ss_pred EEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 492 LNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 492 L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
|++++|+|..+|. +.+++.|-.|++++|.+-...|.+.+|.+|+.|.+++|. +.......+..+++|+.|.+++.+-
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccc
Confidence 5555555555554 445555555555555443333345555555555555554 2333334445555555555555542
Q ss_pred C--CCc-CcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcccc--ccCCCCCCCCCCCCCCccEEEecC
Q 039334 570 P--WLP-KFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEI--KLKDPSTQQLPFLPCSLSELYLRK 644 (782)
Q Consensus 570 ~--~l~-~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~--~~~~~~~~~l~~~~~~L~~L~l~~ 644 (782)
+ .+| ++..+.+|..++++.|+....+..+.++++|+.|++++|.++.+... .+. +|++|+++.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~------------~lEtLNlSr 277 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE------------NLETLNLSR 277 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHh------------hhhhhcccc
Confidence 2 333 45556666666666554433333455666666666666666544321 111 566666665
Q ss_pred CCCCCCCCc-CCCCCCCCEEEeecCCCc--cccc---cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCC
Q 039334 645 CSALEHLPL-TTALKNLELLDLSNTNLK--KLPS---ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTEL 717 (782)
Q Consensus 645 ~~~l~~l~~-~~~l~~L~~L~L~~~~l~--~l~~---~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l 717 (782)
| .+..+|. +-.++.|+.|.+.+|+++ .+|+ .+.+|+.+...+| .++-.| .++.|+.|+.|.+++| .+-.+
T Consensus 278 N-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTL 354 (1255)
T KOG0444|consen 278 N-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITL 354 (1255)
T ss_pred c-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeec
Confidence 5 4555554 555666666666666554 4555 3444555555554 555555 4666666666666655 44456
Q ss_pred CC-CCCCCCcCEEeccCCC
Q 039334 718 PN-LNDFPKLDLLDISNTG 735 (782)
Q Consensus 718 ~~-~~~l~~L~~L~l~~~~ 735 (782)
|. +.-++.|+.|++..|+
T Consensus 355 PeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhcCCcceeeccCCc
Confidence 65 5556666667766665
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=9.5e-26 Score=222.38 Aligned_cols=336 Identities=25% Similarity=0.330 Sum_probs=191.1
Q ss_pred CCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l 494 (782)
+..+..++..+|++...|.. .+..|..+++.+|.+...++..-+++.|++|+...| .++.+|+++ +.|.+|..|++
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~l-g~l~~L~~LyL 213 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPEL-GGLESLELLYL 213 (565)
T ss_pred HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhh-cchhhhHHHHh
Confidence 44555555555555555554 555555566666666555555444666666666655 356666665 66666666666
Q ss_pred cCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc
Q 039334 495 SRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 495 ~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
.+|++..+|.|..+..|+.|+++.|.+...... ...++++.+|+++++..- . .|..+..+.+|+.|++++|.++.+|
T Consensus 214 ~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e-~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 214 RRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E-VPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred hhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-c-CchHHHHhhhhhhhcccCCccccCC
Confidence 666666666666666666666666543322222 356666666666666532 1 2344555666666666666666665
Q ss_pred -CcCCCCcccEEEecCcCCCCC------------------------C------------------CCCCCCCCCCEEEcc
Q 039334 574 -KFTDLKHLSRILLRGCRKLHI------------------------L------------------PSFQKLHSLKILDLS 610 (782)
Q Consensus 574 -~~~~l~~L~~L~l~~~~~~~~------------------------~------------------~~l~~l~~L~~L~l~ 610 (782)
+++++ +|+.|.+.+|+..+. + +......+.+.|+++
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 56666 666666665542110 0 001112234444444
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCCccEEEecCC-----------------------CCCCCCCc-CCCCCCCCEEEee
Q 039334 611 EVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKC-----------------------SALEHLPL-TTALKNLELLDLS 666 (782)
Q Consensus 611 ~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-----------------------~~l~~l~~-~~~l~~L~~L~L~ 666 (782)
+-.++.+++..|..... .-....++++| ..+...|. +..+++|..|+|+
T Consensus 371 ~~qlt~VPdEVfea~~~-------~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKS-------EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred ccccccCCHHHHHHhhh-------cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 44444444333221100 01222223222 12222222 4456677777777
Q ss_pred cCCCccccc---cccccceeeccccccCCCCCCCCCCC-cccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCCC
Q 039334 667 NTNLKKLPS---ELCNLRKLLLNNCLSLTKLPEMKGLE-KLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIP 740 (782)
Q Consensus 667 ~~~l~~l~~---~l~~L~~L~L~~~~~l~~l~~~~~l~-~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~lp 740 (782)
+|-+..+|. .+..|+.|+++.| ....+|.+.... .|+.+-.++ .+++.++. +.+|.+|..|++.+|.+..+|
T Consensus 444 NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IP 521 (565)
T KOG0472|consen 444 NNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQIP 521 (565)
T ss_pred cchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhhCC
Confidence 777776666 4555667777766 445555333222 333333333 36777765 889999999999999999999
Q ss_pred hhhhCCCCCCcccEEeCCCCCCCCCccccc
Q 039334 741 DEILELSRPKIIREVDEETNQAEDVNRGRG 770 (782)
Q Consensus 741 ~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~ 770 (782)
+.++++++|+ +|++.+|+|+ .|+...
T Consensus 522 p~LgnmtnL~---hLeL~gNpfr-~Pr~~i 547 (565)
T KOG0472|consen 522 PILGNMTNLR---HLELDGNPFR-QPRHQI 547 (565)
T ss_pred hhhcccccee---EEEecCCccC-CCHHHH
Confidence 9998877766 7799999999 555443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=9.2e-21 Score=230.53 Aligned_cols=336 Identities=25% Similarity=0.372 Sum_probs=231.7
Q ss_pred ChhhHhcCCCCceEEEecCCCCC-------CCCcc--C-CCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCC
Q 039334 409 DHSTFFNLMPKLQVLAIFKPTFK-------SLMSS--S-FERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSN 478 (782)
Q Consensus 409 ~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~--~-l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l 478 (782)
+....|.+|.+|+.|.+..+... .+|.. . .+.||.|.+.++.+...|..+ .+.+|+.|++.++. +..+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L 626 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKL 626 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-cccc
Confidence 34556777888888887654321 12222 2 245788888777766666555 46778888887774 7777
Q ss_pred chHHhcCCCCccEEEccCCC-CCCCCCCCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCC
Q 039334 479 PDELFDGMAQLQSLNLSRCP-MKSLPSLPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSH 556 (782)
Q Consensus 479 p~~~~~~l~~L~~L~l~~~~-l~~lp~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 556 (782)
+..+ ..+++|++|+++++. ++.+|.+..+++|+.|++.+|..+..+|. +..+++|+.|++++|..+..++. .+ ++
T Consensus 627 ~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l 703 (1153)
T PLN03210 627 WDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NL 703 (1153)
T ss_pred cccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CC
Confidence 7765 677888888887764 66677777778888888887776666665 57778888888877765554432 22 56
Q ss_pred CCccEEEccCCC-CCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCC
Q 039334 557 TNLQMVDLSYTQ-IPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPC 635 (782)
Q Consensus 557 ~~L~~L~l~~~~-~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~ 635 (782)
++|+.|++++|. +..+|.. ..+|+.|++.++.. ..+|....+++|+.|.+..+....+....... .......++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i-~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l--~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI-EEFPSNLRLENLDELILCEMKSEKLWERVQPL--TPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc-ccccccccccccccccccccchhhcccccccc--chhhhhccc
Confidence 777778777764 2334432 45677777777653 34444335677777777653322111100000 000112346
Q ss_pred CccEEEecCCCCCCCCCc-CCCCCCCCEEEeecC-CCccccc--cccccceeeccccccCCCCCCCCCCCcccEEecccC
Q 039334 636 SLSELYLRKCSALEHLPL-TTALKNLELLDLSNT-NLKKLPS--ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGC 711 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~-~l~~l~~--~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c 711 (782)
+|+.|++++|+.+..+|. ++.+++|+.|++++| .+..+|. .+++|++|++++|..+..+|.. .++|+.|++++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n 856 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT 856 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCC
Confidence 899999999998888887 889999999999986 5778887 6899999999999988888754 368999999997
Q ss_pred CCCCCCCC-CCCCCCcCEEeccCCC-CCCCChhhhCCCCCCcccEEeCCCC
Q 039334 712 INLTELPN-LNDFPKLDLLDISNTG-IREIPDEILELSRPKIIREVDEETN 760 (782)
Q Consensus 712 ~~l~~l~~-~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~~l~~~~n 760 (782)
.++.+|. +..+++|+.|++++|+ ++.+|..+.. |+.|+.++++++
T Consensus 857 -~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~---L~~L~~L~l~~C 903 (1153)
T PLN03210 857 -GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK---LKHLETVDFSDC 903 (1153)
T ss_pred -CCccChHHHhcCCCCCEEECCCCCCcCccCccccc---ccCCCeeecCCC
Confidence 7888998 8899999999999985 8888876644 455556666643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=5.3e-24 Score=210.15 Aligned_cols=374 Identities=21% Similarity=0.281 Sum_probs=243.1
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEE
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLE 468 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ 468 (782)
....+..+.++.|..... |.+ ...+..+..++.+.|.+..+|+. .+..|+.+++++|.+...++.++.+..|..|+
T Consensus 66 nL~~l~vl~~~~n~l~~l-p~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQL-PAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cccceeEEEeccchhhhC-CHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 344455666666665432 222 23355666777777777777766 77788888888888888888888888888888
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCc
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSS 547 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 547 (782)
..+|. +..+|+++ ..+.+|..|++.+|.++.+|. .-+++.|++|+...|......|.++.+.+|..|++..+. +..
T Consensus 144 ~~~N~-i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~ 220 (565)
T KOG0472|consen 144 ATNNQ-ISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRF 220 (565)
T ss_pred ccccc-cccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-ccc
Confidence 87774 78888886 778888888888888888887 445888899988887644445558999999999998887 333
Q ss_pred ccccccCCCCCccEEEccCCCCCCCcC--cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcccccc---
Q 039334 548 FQQLDFSSHTNLQMVDLSYTQIPWLPK--FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKL--- 622 (782)
Q Consensus 548 ~~~~~l~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~--- 622 (782)
.+ .|+.|..|+.++++.|++.-+|. ..+++++..|++.+|...+.+..++.+.+|..||+++|.+++++..--
T Consensus 221 lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlh 298 (565)
T KOG0472|consen 221 LP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLH 298 (565)
T ss_pred CC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccce
Confidence 32 78899999999999999888883 557999999999998766666678889999999999999886643100
Q ss_pred ------CCC--------------------------------------CCCCCCCCC-------CCccEEEecCCCCCCCC
Q 039334 623 ------KDP--------------------------------------STQQLPFLP-------CSLSELYLRKCSALEHL 651 (782)
Q Consensus 623 ------~~~--------------------------------------~~~~l~~~~-------~~L~~L~l~~~~~l~~l 651 (782)
.+. +....+..+ .+.+.|++++ ..++.+
T Consensus 299 L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~V 377 (565)
T KOG0472|consen 299 LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLV 377 (565)
T ss_pred eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccC
Confidence 000 000000000 1233333333 123333
Q ss_pred Cc--C--CCCCCCCEEEeecCCCccccccccccce---eeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCC
Q 039334 652 PL--T--TALKNLELLDLSNTNLKKLPSELCNLRK---LLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LND 722 (782)
Q Consensus 652 ~~--~--~~l~~L~~L~L~~~~l~~l~~~l~~L~~---L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~ 722 (782)
|. + +.-.-.+..+++.|++..+|..++-++. ..+.+++.+..+| .++.+++|.-|++++| .+.++|. ++.
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~ 456 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGS 456 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhh
Confidence 32 1 1112255666666766666653332222 1122222344444 3455566666666554 4555665 555
Q ss_pred CCCcCEEeccCCCCCCCChhh---------------------hCCCCCCcccEEeCCCCCCCCCcccccCcc
Q 039334 723 FPKLDLLDISNTGIREIPDEI---------------------LELSRPKIIREVDEETNQAEDVNRGRGGMF 773 (782)
Q Consensus 723 l~~L~~L~l~~~~l~~lp~~~---------------------~~l~~L~~L~~l~~~~n~~~~~~~~~~~~~ 773 (782)
+..|+.|+++.|++..+|..+ ..+..++.|..||+.+|.+.+||++.+.+.
T Consensus 457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMT 528 (565)
T ss_pred hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccc
Confidence 555666666666555444321 135667778899999999999999988754
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-22 Score=217.12 Aligned_cols=200 Identities=29% Similarity=0.444 Sum_probs=136.4
Q ss_pred CCCccEEEccCCCCCCCcC-cCCCCcccEEEecCcC-----------------------CCCCCCCCCCCCCCCEEEccc
Q 039334 556 HTNLQMVDLSYTQIPWLPK-FTDLKHLSRILLRGCR-----------------------KLHILPSFQKLHSLKILDLSE 611 (782)
Q Consensus 556 l~~L~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~-----------------------~~~~~~~l~~l~~L~~L~l~~ 611 (782)
..+|+.++++.+++..+|+ ++.+.+|+.+....|. ....++.+.++++|+.|++..
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 3566777777776666663 4446666666555443 222334456688999999999
Q ss_pred CCCCCccccccCCC---------CCCCCCCC-------CCCccEEEecCCCCCCC-CCcCCCCCCCCEEEeecCCCcccc
Q 039334 612 VGFSNFTEIKLKDP---------STQQLPFL-------PCSLSELYLRKCSALEH-LPLTTALKNLELLDLSNTNLKKLP 674 (782)
Q Consensus 612 ~~l~~~~~~~~~~~---------~~~~l~~~-------~~~L~~L~l~~~~~l~~-l~~~~~l~~L~~L~L~~~~l~~l~ 674 (782)
|.+...++..+... +...++.+ .+.|+.|++.+|..... +|.+.++++|+.|+|++|.+..+|
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 99887776433211 11112211 24688888888754433 677888999999999999999998
Q ss_pred c----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCC--CCChhhhCCC
Q 039334 675 S----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIR--EIPDEILELS 747 (782)
Q Consensus 675 ~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~ 747 (782)
. .+..|++|+|++| +++.+| .+.+++.|++|....| .+...|.+..++.|+.++++.|.|+ .+|+.. +
T Consensus 400 as~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~---p 474 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL---P 474 (1081)
T ss_pred HHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhC---C
Confidence 8 6778888999998 678877 4667778888877666 6667777777788888888888776 344332 2
Q ss_pred CCCcccEEeCCCCC
Q 039334 748 RPKIIREVDEETNQ 761 (782)
Q Consensus 748 ~L~~L~~l~~~~n~ 761 (782)
+ +.|+.||+++|.
T Consensus 475 ~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 S-PNLKYLDLSGNT 487 (1081)
T ss_pred C-cccceeeccCCc
Confidence 2 566677777776
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=7.1e-21 Score=207.01 Aligned_cols=353 Identities=21% Similarity=0.241 Sum_probs=207.6
Q ss_pred ceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecC
Q 039334 395 VLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGA 472 (782)
Q Consensus 395 l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~ 472 (782)
+..|.++.|.+.. .|-++..+.-+|++|++++|.+..+|.. .+.+|+.|+++.|.+...+....++.+|++|.|.+|
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhcccccccc-CchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 5566666665432 3455666666699999999999988887 889999999999998888888999999999999988
Q ss_pred CCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCc-----------------cCCCcc
Q 039334 473 SSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPSL-----------------KELHEL 534 (782)
Q Consensus 473 ~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~-----------------~~l~~L 534 (782)
.+..+|.++ ..+.+|++|+++.|.+..+|. +..+..+..+..++|.....++.+ .....|
T Consensus 102 -~l~~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 102 -RLQSLPASI-SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred -hhhcCchhH-HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence 489999997 999999999999999999998 888888888888887322222211 111223
Q ss_pred cE-EEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--------------------CcCCCCcccEEEecCcCCCC
Q 039334 535 EI-IDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--------------------KFTDLKHLSRILLRGCRKLH 593 (782)
Q Consensus 535 ~~-L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--------------------~~~~l~~L~~L~l~~~~~~~ 593 (782)
++ |+++++... ...+..+.+|+.+....|.+..+. .-....+|+.++++.+....
T Consensus 180 ~~~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 180 THQLDLRYNEME----VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN 255 (1081)
T ss_pred heeeecccchhh----hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc
Confidence 32 555555422 123344455555555444443221 11113445555555544333
Q ss_pred CCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCcc
Q 039334 594 ILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKK 672 (782)
Q Consensus 594 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~ 672 (782)
...+++.+.+|+.+.+.+|.+..++...+... +|+.|....| .+..+|. ...+++|++|+|..|++..
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~----------~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVALPLRISRIT----------SLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred chHHHHhcccceEecccchhHHhhHHHHhhhh----------hHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccc
Confidence 33345556666666666666554433322211 2333333333 1222222 2334444444444444443
Q ss_pred ccc-----------------------------cccccceeeccccccCCC-CCCCCCCCcccEEecccCCCCCCCCC--C
Q 039334 673 LPS-----------------------------ELCNLRKLLLNNCLSLTK-LPEMKGLEKLEELRLSGCINLTELPN--L 720 (782)
Q Consensus 673 l~~-----------------------------~l~~L~~L~L~~~~~l~~-l~~~~~l~~L~~L~l~~c~~l~~l~~--~ 720 (782)
+|. .++.|+.|.+.+|..-.. +|.+.++++|+.|++++| .+..+|. +
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~ 403 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKL 403 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHH
Confidence 332 223344444444421111 234455555666666555 5555555 5
Q ss_pred CCCCCcCEEeccCCCCCCCChhhhC-------------------CCCCCcccEEeCCCCCCCCCc
Q 039334 721 NDFPKLDLLDISNTGIREIPDEILE-------------------LSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 721 ~~l~~L~~L~l~~~~l~~lp~~~~~-------------------l~~L~~L~~l~~~~n~~~~~~ 766 (782)
.+++.|+.|+++||+++.+|..+.. +..|+.|+.+|+|+|+++.+.
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhh
Confidence 5555555555555555555544322 244555567788888887654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.9e-17 Score=186.74 Aligned_cols=263 Identities=23% Similarity=0.291 Sum_probs=172.6
Q ss_pred CCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccC
Q 039334 439 ERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQ 518 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~ 518 (782)
..-..|+++.+.+...|+.+. ++|+.|++.+|. +..+|. .+++|++|++++|.++.+|.+ .++|+.|++.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccC
Confidence 345678888888877776664 478899998874 777774 357899999999988888862 35788888888
Q ss_pred CCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCC
Q 039334 519 CSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSF 598 (782)
Q Consensus 519 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l 598 (782)
|.+ ..+|.+ ..+|+.|++++|. +..++. .+++|+.|++++|.+..+|.+ ..+|+.|.+.+|... .+|.+
T Consensus 272 N~L-~~Lp~l--p~~L~~L~Ls~N~-Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~-~LP~l 340 (788)
T PRK15387 272 NPL-THLPAL--PSGLCKLWIFGNQ-LTSLPV----LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLT-SLPTL 340 (788)
T ss_pred Cch-hhhhhc--hhhcCEEECcCCc-cccccc----cccccceeECCCCccccCCCC--cccccccccccCccc-ccccc
Confidence 864 344432 3467778887776 333221 246788888888887777653 345777777765443 23332
Q ss_pred CCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCcccccccc
Q 039334 599 QKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPSELC 678 (782)
Q Consensus 599 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~~l~ 678 (782)
. .+|+.|++++|.++.++. .+.+|+.|++++| .+..+|.. +++|+.|++++|.++.+|...+
T Consensus 341 p--~~Lq~LdLS~N~Ls~LP~-------------lp~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s 402 (788)
T PRK15387 341 P--SGLQELSVSDNQLASLPT-------------LPSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNRLTSLPVLPS 402 (788)
T ss_pred c--cccceEecCCCccCCCCC-------------CCcccceehhhcc-ccccCccc--ccccceEEecCCcccCCCCccc
Confidence 2 367778887777765432 2236677777765 34445542 2467777777777777776666
Q ss_pred ccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCC-CCChhh
Q 039334 679 NLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIR-EIPDEI 743 (782)
Q Consensus 679 ~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~-~lp~~~ 743 (782)
+|+.|++++| .++.+|.. ..+|+.|++++| .++.+|. +..+++|+.|++++|+++ ..|..+
T Consensus 403 ~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 7777777776 35556542 245677777766 5667776 666777777777777766 334434
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.4e-17 Score=187.87 Aligned_cols=255 Identities=23% Similarity=0.240 Sum_probs=168.8
Q ss_pred CCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC
Q 039334 418 PKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC 497 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 497 (782)
..-..|+++++.+..+|+.-.++|+.|++.+|.+...+. .+++|++|++++| .+..+|. ..++|++|++++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~----lp~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccC----cccccceeeccCC
Confidence 345677788887777776544578888888877766543 2467888888877 4667764 2467788888888
Q ss_pred CCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCC
Q 039334 498 PMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTD 577 (782)
Q Consensus 498 ~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~ 577 (782)
.++.+|.+ +.+|+.|++.+|.+. .+|. .+++|+.|++++|. +..++. ...+|+.|++++|.+..+|.+
T Consensus 273 ~L~~Lp~l--p~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~-L~~Lp~----lp~~L~~L~Ls~N~L~~LP~l-- 340 (788)
T PRK15387 273 PLTHLPAL--PSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSLPTL-- 340 (788)
T ss_pred chhhhhhc--hhhcCEEECcCCccc-cccc--cccccceeECCCCc-cccCCC----CcccccccccccCcccccccc--
Confidence 77777761 256777888877643 3443 24578888887775 333221 124577777788777777653
Q ss_pred CCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCC
Q 039334 578 LKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTAL 657 (782)
Q Consensus 578 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l 657 (782)
..+|+.|++++|... .+|.+ .++|+.|++++|.++.++. .+.+|+.|++++| .+..+|.. .
T Consensus 341 p~~Lq~LdLS~N~Ls-~LP~l--p~~L~~L~Ls~N~L~~LP~-------------l~~~L~~LdLs~N-~Lt~LP~l--~ 401 (788)
T PRK15387 341 PSGLQELSVSDNQLA-SLPTL--PSELYKLWAYNNRLTSLPA-------------LPSGLKELIVSGN-RLTSLPVL--P 401 (788)
T ss_pred ccccceEecCCCccC-CCCCC--CcccceehhhccccccCcc-------------cccccceEEecCC-cccCCCCc--c
Confidence 346788888776543 33432 2467777777777664432 2236788888776 34455542 3
Q ss_pred CCCCEEEeecCCCccccccccccceeeccccccCCCCC-CCCCCCcccEEecccCC
Q 039334 658 KNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCI 712 (782)
Q Consensus 658 ~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~ 712 (782)
++|+.|++++|.++.+|..+.+|+.|++++| .++.+| .+..+++|+.|++++|+
T Consensus 402 s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 402 SELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCEEEccCCcCCCCCcchhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 5788888888888877776667788888777 466777 46777888888888874
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-16 Score=157.56 Aligned_cols=241 Identities=19% Similarity=0.191 Sum_probs=156.4
Q ss_pred CceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEec-CCCCCCC-ccccCCCCCcEEE
Q 039334 394 EVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRN-CDMLEDI-TGIKELKTLSVLE 468 (782)
Q Consensus 394 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~-~~~~~~~-~~l~~l~~L~~L~ 468 (782)
....+.+..|.++ .+|...|+.+.+||.|+++.|.|..+.+. .++.|..|-+.+ |++...+ ..|++|..|+-|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3446777777765 46777788888888888888888777666 555666665555 6666655 3678888888888
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCC------------CCC-ccCCCc
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEY------------MPS-LKELHE 533 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~------------~~~-~~~l~~ 533 (782)
+.-|. +..++...|..|++|..|.+.+|.+..++. +..+..++++++..|.+.-. .+. ++....
T Consensus 147 lNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 87774 777777777888888888888888887776 77778888887766652110 000 111111
Q ss_pred ccEEEccCCC-------------------------CCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEe
Q 039334 534 LEIIDLSGAT-------------------------SLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILL 586 (782)
Q Consensus 534 L~~L~l~~~~-------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l 586 (782)
..-..+.+.+ .....+...|..+++|+.|++++|.++.+. .|.....++.|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111111000 011112234677888888888888888775 5778888888888
Q ss_pred cCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCC
Q 039334 587 RGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKC 645 (782)
Q Consensus 587 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 645 (782)
..|.....-. .|.++..|+.|++++|.++.+.+..+.... .|.+|.+-.|
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~---------~l~~l~l~~N 356 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF---------SLSTLNLLSN 356 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc---------eeeeeehccC
Confidence 8765433222 367788888888888888877666554322 5555555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=2.5e-14 Score=162.97 Aligned_cols=243 Identities=21% Similarity=0.277 Sum_probs=137.3
Q ss_pred CCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEcc
Q 039334 462 KTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLS 540 (782)
Q Consensus 462 ~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 540 (782)
.+...|+++++ .+..+|..+ .++|+.|++++|.++.+|. +. .+|+.|++++|.+. .+|.. -..+|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPAT-LPDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChh-hhccccEEECc
Confidence 45678888887 477888755 3578999999999999887 53 58999999988644 44431 12367777777
Q ss_pred CCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcccc
Q 039334 541 GATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEI 620 (782)
Q Consensus 541 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 620 (782)
+|.. ..++ ..+ ..+|+.|++++|.+..+|.- -.++|+.|++++|.....+..+. ++|+.|++++|.++.++..
T Consensus 250 ~N~L-~~LP-~~l--~s~L~~L~Ls~N~L~~LP~~-l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 250 INRI-TELP-ERL--PSALQSLDLFHNKISCLPEN-LPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET 322 (754)
T ss_pred CCcc-CcCC-hhH--hCCCCEEECcCCccCccccc-cCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc
Confidence 7763 3322 222 24677777777777766631 12456666666654332211121 3456666666655543211
Q ss_pred ccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc-cccccceeeccccccCCCCCC-CC
Q 039334 621 KLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS-ELCNLRKLLLNNCLSLTKLPE-MK 698 (782)
Q Consensus 621 ~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~-~l~~L~~L~L~~~~~l~~l~~-~~ 698 (782)
++.+|+.|.+++|. +..+|.. -+++|+.|++++|.++.+|. ..++|+.|+|++| .+..+|. +.
T Consensus 323 ------------l~~sL~~L~Ls~N~-Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N-~Lt~LP~~l~ 387 (754)
T PRK15370 323 ------------LPPGLKTLEAGENA-LTSLPAS-LPPELQVLDVSKNQITVLPETLPPTITTLDVSRN-ALTNLPENLP 387 (754)
T ss_pred ------------ccccceeccccCCc-cccCChh-hcCcccEEECCCCCCCcCChhhcCCcCEEECCCC-cCCCCCHhHH
Confidence 11256666666553 3334431 12456666666666655554 2345666666655 3444442 21
Q ss_pred CCCcccEEecccCCCCCCCCC-----CCCCCCcCEEeccCCCCC
Q 039334 699 GLEKLEELRLSGCINLTELPN-----LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 699 ~l~~L~~L~l~~c~~l~~l~~-----~~~l~~L~~L~l~~~~l~ 737 (782)
++|+.|++++| .+..+|. ...++++..|++.+|+++
T Consensus 388 --~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 --AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 24555666555 4445443 223355556666666554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=3.5e-14 Score=161.69 Aligned_cols=239 Identities=22% Similarity=0.265 Sum_probs=118.8
Q ss_pred ceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 420 LQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 420 L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
...|.+.++.+..+|..-.++|+.|++++|.+...+..+. .+|++|++++|. +..+|..+ ..+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh---hccccEEECcCCcc
Confidence 3444454444444443323445555555555544443332 355555555553 44555433 23455555555555
Q ss_pred CCCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCC
Q 039334 500 KSLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTD 577 (782)
Q Consensus 500 ~~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~ 577 (782)
..+|. +. .+|+.|++++|.+. .+|. +. ++|+.|+++ +|.+..+|.. -
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls-------------------------~N~Lt~LP~~-l 302 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY-------------------------DNSIRTLPAH-L 302 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC-------------------------CCccccCccc-c
Confidence 55554 32 34555555554432 2222 11 233333333 3333333210 0
Q ss_pred CCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCC
Q 039334 578 LKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTAL 657 (782)
Q Consensus 578 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l 657 (782)
.++|+.|++++|.....+..+ .++|+.|++++|.++.++. .++++|+.|++++|. +..+|.. -.
T Consensus 303 p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~------------~l~~sL~~L~Ls~N~-L~~LP~~-lp 366 (754)
T PRK15370 303 PSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPA------------SLPPELQVLDVSKNQ-ITVLPET-LP 366 (754)
T ss_pred hhhHHHHHhcCCccccCCccc--cccceeccccCCccccCCh------------hhcCcccEEECCCCC-CCcCChh-hc
Confidence 123444444443322111111 1355666666655554321 112366667776663 3444431 13
Q ss_pred CCCCEEEeecCCCccccccc-cccceeeccccccCCCCCC-----CCCCCcccEEecccCC
Q 039334 658 KNLELLDLSNTNLKKLPSEL-CNLRKLLLNNCLSLTKLPE-----MKGLEKLEELRLSGCI 712 (782)
Q Consensus 658 ~~L~~L~L~~~~l~~l~~~l-~~L~~L~L~~~~~l~~l~~-----~~~l~~L~~L~l~~c~ 712 (782)
++|+.|+|++|.++.+|..+ .+|+.|++++| .+..+|. ...++++..|++.+|+
T Consensus 367 ~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRNALTNLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCCcCCCCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 57888888888888777743 46888888877 4556652 2345788888888884
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=7.1e-16 Score=153.02 Aligned_cols=260 Identities=21% Similarity=0.266 Sum_probs=175.2
Q ss_pred CceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC-CccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEc
Q 039334 419 KLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l 494 (782)
.-..+.+..|.|+.+|+. .++.||.|+|+.|.+... +.+|.++..|..|-+-+++.|..+|...|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567888999999999887 888999999999988776 4578999988888887755799999998999999999999
Q ss_pred cCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEccCCCCCCcc-----------cccccCCCCCc
Q 039334 495 SRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLSGATSLSSF-----------QQLDFSSHTNL 559 (782)
Q Consensus 495 ~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~-----------~~~~l~~l~~L 559 (782)
..|.+..++. +..+++|..|.+.+|.+ +.++. +..+..++.+.+..+..+... .+..++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9998888776 88899999999988863 33443 577778888877766532210 01111112222
Q ss_pred cEEEccCCCCCCCcCcCCCCcccEE---EecCcCCCCCCC--CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCC
Q 039334 560 QMVDLSYTQIPWLPKFTDLKHLSRI---LLRGCRKLHILP--SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLP 634 (782)
Q Consensus 560 ~~L~l~~~~~~~l~~~~~l~~L~~L---~l~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~ 634 (782)
....+.+..+..+++=....+++.+ ....|......| .|..+++|+.|++++|.++.+.+..+++..
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-------- 298 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-------- 298 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh--------
Confidence 2222222223333211111112221 112222222223 277889999999999999888887777654
Q ss_pred CCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc----cccccceeeccccc
Q 039334 635 CSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCL 689 (782)
Q Consensus 635 ~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~ 689 (782)
.+++|.|..| ++..+.. +..+.+|+.|+|.+|+++.+.+ .+.+|.+|++-.|+
T Consensus 299 -~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 299 -ELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -hhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 7888888876 4444443 6678888888888888886654 45567777775543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=4e-14 Score=124.53 Aligned_cols=153 Identities=24% Similarity=0.331 Sum_probs=105.0
Q ss_pred CCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l 494 (782)
+++...|.++.|.+..+|+. .+.+|++|++++|.+...|..++.+++|+.|+++.|+ +..+|..+ +.++-|+.||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgf-gs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGF-GSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCcccc-CCCchhhhhhc
Confidence 45555666666666666665 6777777777777777777777777777777777664 66777775 77777777777
Q ss_pred cCCCCC--CCCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCC
Q 039334 495 SRCPMK--SLPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPW 571 (782)
Q Consensus 495 ~~~~l~--~lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 571 (782)
..|.+. .+|. +..++.|+.|++++|.+-...|.++++++||.|.+.++..++- +..++.+..|+.|++.+|.++-
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l--pkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL--PKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC--cHHHHHHHHHHHHhcccceeee
Confidence 777665 4777 7777777777777776544445567777777777776654322 4556666667777776666665
Q ss_pred Cc
Q 039334 572 LP 573 (782)
Q Consensus 572 l~ 573 (782)
+|
T Consensus 188 lp 189 (264)
T KOG0617|consen 188 LP 189 (264)
T ss_pred cC
Confidence 54
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=4.7e-14 Score=124.05 Aligned_cols=159 Identities=24% Similarity=0.356 Sum_probs=113.5
Q ss_pred CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEE
Q 039334 437 SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLI 515 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~ 515 (782)
.+.+.+.|.+++|.++..++.+..+.+|+.|++.+|. +..+|.++ +.|++|+.|+++-|.+..+|. ++.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 5677888889999888888899999999999998884 88899887 889999999999888888888 88899999999
Q ss_pred ccCCCCCC-CCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc-CcCCCCcccEEEecCcCCC
Q 039334 516 LRQCSCLE-YMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP-KFTDLKHLSRILLRGCRKL 592 (782)
Q Consensus 516 l~~~~~~~-~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~ 592 (782)
+..|++.+ .+|. +..++.|+.|+++++. +. +.+..++++++|+.|.+..|++..+| .++.+..|++|.|.++...
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dnd-fe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDND-FE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCC-cc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 88876543 3443 4556666666666654 22 22445566666666666666666665 4555666666666665443
Q ss_pred CCCCCCC
Q 039334 593 HILPSFQ 599 (782)
Q Consensus 593 ~~~~~l~ 599 (782)
-.+|.++
T Consensus 187 vlppel~ 193 (264)
T KOG0617|consen 187 VLPPELA 193 (264)
T ss_pred ecChhhh
Confidence 3333333
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=3.2e-12 Score=148.08 Aligned_cols=150 Identities=23% Similarity=0.296 Sum_probs=106.5
Q ss_pred CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCC-CCCCchHHhcCCCCccEEEccCC-CCCCCCC-CCCCCCCcE
Q 039334 437 SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASS-LKSNPDELFDGMAQLQSLNLSRC-PMKSLPS-LPKLTKLRF 513 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~lp~~~~~~l~~L~~L~l~~~-~l~~lp~-l~~l~~L~~ 513 (782)
.....|.+.+.++.+...+.. ...++|+.|-+.++.. +..++..+|..|+.|++||+++| .+..+|. ++.+.+|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 445566666666554333332 2334788888888753 78888888899999999999988 4889999 999999999
Q ss_pred EEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCC----CcCcCCCCcccEEEecC
Q 039334 514 LILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPW----LPKFTDLKHLSRILLRG 588 (782)
Q Consensus 514 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----l~~~~~l~~L~~L~l~~ 588 (782)
|+++++.+..-++.+++|..|.+|++..+...... +.....+++|++|.+....... +..+..+.+|+.+.+..
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 99999975543345899999999999987754443 4455568899999887654211 12344455555555543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=8.8e-12 Score=131.97 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=92.9
Q ss_pred EEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCC-----Ccc--CCCCccEEEEecCCCCCC-------CccccCCCC
Q 039334 398 LLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSL-----MSS--SFERLTVLVLRNCDMLED-------ITGIKELKT 463 (782)
Q Consensus 398 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~--~l~~L~~L~L~~~~~~~~-------~~~l~~l~~ 463 (782)
|++.++.+.+..-..++..+.+|+.|.+.++.+... +.. ..+.++.|+++++.+... +..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555554333345555566677777777766321 111 445566666666554321 123445556
Q ss_pred CcEEEeecCCCCCCCchHHhcCCCC---ccEEEccCCCCCC-----CCC-CCCC-CCCcEEEccCCCCCCCCCCccCCCc
Q 039334 464 LSVLEISGASSLKSNPDELFDGMAQ---LQSLNLSRCPMKS-----LPS-LPKL-TKLRFLILRQCSCLEYMPSLKELHE 533 (782)
Q Consensus 464 L~~L~L~~~~~~~~lp~~~~~~l~~---L~~L~l~~~~l~~-----lp~-l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~ 533 (782)
|++|++++|......+..+ ..+.+ |++|++++|.+.. +.. +..+ ++|+.|++++|.+......
T Consensus 83 L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 83 LQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred eeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 6666666654222222222 33333 6666666665542 111 2333 5555555555543311000
Q ss_pred ccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCC-----Cc-CcCCCCcccEEEecCcCCCCC-----CCCCCCCC
Q 039334 534 LEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPW-----LP-KFTDLKHLSRILLRGCRKLHI-----LPSFQKLH 602 (782)
Q Consensus 534 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~~~~~-----~~~l~~l~ 602 (782)
.....+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|..... ...+..++
T Consensus 156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 001123334455555555554431 11 122334555555555432211 11244566
Q ss_pred CCCEEEcccCCCCC
Q 039334 603 SLKILDLSEVGFSN 616 (782)
Q Consensus 603 ~L~~L~l~~~~l~~ 616 (782)
+|+.|++++|.+++
T Consensus 222 ~L~~L~ls~n~l~~ 235 (319)
T cd00116 222 SLEVLNLGDNNLTD 235 (319)
T ss_pred CCCEEecCCCcCch
Confidence 77777777766654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=4.9e-12 Score=133.95 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=20.6
Q ss_pred CCcccEEecccCCCCCC-----CCC-CCCCCCcCEEeccCCCCC
Q 039334 700 LEKLEELRLSGCINLTE-----LPN-LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 700 l~~L~~L~l~~c~~l~~-----l~~-~~~l~~L~~L~l~~~~l~ 737 (782)
.+.|+.|++++| .++. +.. +..+++|+.+++++|.++
T Consensus 249 ~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 249 NISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 356666666666 3321 112 344566677777776665
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=7.7e-09 Score=125.81 Aligned_cols=294 Identities=12% Similarity=0.102 Sum_probs=169.5
Q ss_pred HHHHHHHhhcC-CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc-cchhHHHHHHHHhhccCCCchhh
Q 039334 11 KEKISELLKED-GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK-YSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 11 ~~~l~~~l~~~-~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
+.+|.+.|.+. ..+++.|.|++|.||||++....+. .. .++|+++... -+...+...++..+.....+...
T Consensus 19 R~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~-----~~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~ 91 (903)
T PRK04841 19 RERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG-----KN--NLGWYSLDESDNQPERFASYLIAALQQATNGHCS 91 (903)
T ss_pred chHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh-----CC--CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccc
Confidence 56777777543 4679999999999999999998864 12 5799999643 45677777777777532211100
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK 168 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~ 168 (782)
. ................+...+....-.+.+++|||||+... ++- .....+..+....| ++-++|||||...
T Consensus 92 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~--~~~-~~~~~l~~l~~~~~----~~~~lv~~sR~~~ 163 (903)
T PRK04841 92 K-SEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLI--TNP-EIHEAMRFFLRHQP----ENLTLVVLSRNLP 163 (903)
T ss_pred h-hhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcC--CCh-HHHHHHHHHHHhCC----CCeEEEEEeCCCC
Confidence 0 00000000111111222222111111278899999999864 111 11222333332222 4578989999852
Q ss_pred c--------CCCeeecC----CCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHHHHHHhhccccchhHHHH
Q 039334 169 Q--------SGKVIKFP----SMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQRDSRDLAS 236 (782)
Q Consensus 169 ~--------~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~~~~~~ 236 (782)
. .....++. +|+.+|+.++|....+.. -.++....|.+.|+|.|+++..++..+...+... .....
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~~~~~ 241 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-IEAAESSRLCDDVEGWATALQLIALSARQNNSSL-HDSAR 241 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch-hhhhH
Confidence 1 12345566 899999999998755543 2445678999999999999999988775543210 01111
Q ss_pred HHhhccccCCCCcccchhh-hcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCCCCchhhHHHHHHHHHH
Q 039334 237 AIGKAAYYEKPDRGVNELI-SCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFEKDREVFELEKAYRKA 315 (782)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~l-~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~ 315 (782)
.+.. .....+...+ .--|+.||.+ .+..++..|+++. ++. .+... .... +.+
T Consensus 242 ~~~~-----~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~----~~~-~l~~~-----l~~~-----------~~~ 294 (903)
T PRK04841 242 RLAG-----INASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRS----MND-ALIVR-----VTGE-----------ENG 294 (903)
T ss_pred hhcC-----CCchhHHHHHHHHHHhcCCHH-HHHHHHHhccccc----CCH-HHHHH-----HcCC-----------CcH
Confidence 1100 0112343333 2247899997 9999999999872 442 22221 1111 224
Q ss_pred HHHHHHHHhccCceec-cCcceehhhhhHhhhhhhh
Q 039334 316 HGALMDLIDRGILKAQ-DVNIVVMEGAALNMIDSRR 350 (782)
Q Consensus 316 ~~~l~~L~~r~l~~~~-~~~~~~~~~~~~~~~~~~~ 350 (782)
...+++|..++++... +... ..+..|+++++..
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~--~~yr~H~L~r~~l 328 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSG--EWFRYHPLFASFL 328 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCC--CEEehhHHHHHHH
Confidence 5578899999987532 2221 1233566666544
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.05 E-value=7.6e-09 Score=106.38 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=114.8
Q ss_pred hhHHHHHHHhh---cCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCc
Q 039334 9 SQKEKISELLK---EDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPN 85 (782)
Q Consensus 9 ~~~~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (782)
....++.+.+. +.+.+.+.|+|++|+||||+++.+++.... ... ..+|+. ....+..+++..|...++.+..+
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~--~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~ 101 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ--ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG 101 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC--CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC
Confidence 44555666553 344568999999999999999999987322 111 223443 33456778888898887663211
Q ss_pred hhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEee
Q 039334 86 IEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRR 165 (782)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr 165 (782)
... ......+...+... ...++++++|+||++.. ..+.+ ..+..+...-.. +.....|++|..
T Consensus 102 ~~~--------~~~~~~l~~~l~~~----~~~~~~~vliiDe~~~l--~~~~~--~~l~~l~~~~~~-~~~~~~vvl~g~ 164 (269)
T TIGR03015 102 RDK--------AALLRELEDFLIEQ----FAAGKRALLVVDEAQNL--TPELL--EELRMLSNFQTD-NAKLLQIFLVGQ 164 (269)
T ss_pred CCH--------HHHHHHHHHHHHHH----HhCCCCeEEEEECcccC--CHHHH--HHHHHHhCcccC-CCCeEEEEEcCC
Confidence 000 00111222222222 13688899999999975 32211 122222221111 111234455554
Q ss_pred cc-----c--c-------CCCeeecCCCCHHHHHHHHHhhh---cc---ccchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 166 TT-----K--Q-------SGKVIKFPSMSTEESLNLLKNEF---SD---HQVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 166 ~~-----~--~-------~~~~~~l~~L~~~~~~~Lf~~~~---~~---~~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
.. . . ....+.+++++.+|..+++...+ +. ..-.++..+.|++.++|.|..+..++..+
T Consensus 165 ~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 165 PEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 32 0 0 01467899999999999988733 21 12345789999999999999998888776
No 28
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=5.7e-09 Score=98.65 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=88.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccc----cceEEEEEcccccchh---HHHHHHHHhhccCCCchhhhhhhhhhh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSS----CYTTLWINKAEKYSSN---LLEEAISRQALCESPNIEEWEEQEEEE 96 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~ 96 (782)
+++.|.|.+|+||||+++.++.+-.. ... +...+|...+...... .+...|..+......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------ 67 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA------------ 67 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh------------
Confidence 57899999999999999999987222 221 3455677665443332 344444444333110
Q ss_pred hcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhh-hhhcCCCCCCCCcEEEEEeecccc------
Q 039334 97 DEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSD-FKNLLPSVQPDHLKIIMTRRTTKQ------ 169 (782)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~-~~~~~p~~~~~gs~IivTTr~~~~------ 169 (782)
.....+... ..+.++++||+|+++......-...+..+.+ +...++....++.+||||+|....
T Consensus 68 -----~~~~~~~~~----~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~ 138 (166)
T PF05729_consen 68 -----PIEELLQEL----LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRR 138 (166)
T ss_pred -----hhHHHHHHH----HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHh
Confidence 000011111 1368899999999986521111101112222 223344323467999999998733
Q ss_pred -CC-CeeecCCCCHHHHHHHHHhhhcc
Q 039334 170 -SG-KVIKFPSMSTEESLNLLKNEFSD 194 (782)
Q Consensus 170 -~~-~~~~l~~L~~~~~~~Lf~~~~~~ 194 (782)
.. ..+++.+|++++..+++.+.|.+
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 139 LKQAQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cCCCcEEEECCCCHHHHHHHHHHHhhc
Confidence 11 57999999999999999887653
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.6e-10 Score=108.00 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=21.9
Q ss_pred cCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCC
Q 039334 484 DGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCS 520 (782)
Q Consensus 484 ~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~ 520 (782)
.-+.+|.++.+++|.-..+.. ...-|.|+.+.+....
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeeccc
Confidence 445677777777776554444 2334567777666543
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.86 E-value=6.3e-08 Score=101.44 Aligned_cols=268 Identities=15% Similarity=0.081 Sum_probs=135.6
Q ss_pred chhhhhhhhHHHHHHHhhc-----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKE-----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 76 (782)
|+||-+ +.++++..++.. +..+.+.++|++|+|||+||+.+++.. ...+. .+..+..... ..+...+
T Consensus 5 ~~iG~~-~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~---~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 5 EFIGQE-KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLK---ITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHcCHH-HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEE---EeccchhcCc-hhHHHHH
Confidence 678888 888888888852 334568899999999999999999872 22221 2221111111 1122222
Q ss_pred HhhccCC-CchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCC
Q 039334 77 RQALCES-PNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQP 155 (782)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~ 155 (782)
..+.... --+++. +... ....+.+... +.+.+..+|+|+..+. . .+.. +. .
T Consensus 77 ~~~~~~~vl~iDEi------~~l~-~~~~e~l~~~-----~~~~~~~~v~~~~~~~--~-------~~~~-----~~--~ 128 (305)
T TIGR00635 77 TNLEEGDVLFIDEI------HRLS-PAVEELLYPA-----MEDFRLDIVIGKGPSA--R-------SVRL-----DL--P 128 (305)
T ss_pred HhcccCCEEEEehH------hhhC-HHHHHHhhHH-----HhhhheeeeeccCccc--c-------ceee-----cC--C
Confidence 2222100 000000 0000 1112223333 3444555666654433 0 1111 11 1
Q ss_pred CCcEEEEEeecccc-------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHHHHhhc
Q 039334 156 DHLKIIMTRRTTKQ-------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAKALKKV 226 (782)
Q Consensus 156 ~gs~IivTTr~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 226 (782)
+..-|..||+.... ....+++++++.++..+++.+..+. ....++....|++.|+|.|-.+..++..+...
T Consensus 129 ~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDF 208 (305)
T ss_pred CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34566667775422 2356789999999999999984332 23356788899999999997655444433211
Q ss_pred cccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhh-hhhccccCCccccHHHHHHHHHHcCCCCCchhh
Q 039334 227 VQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFW-HSIQFFRKYRSIHYNVLITHWIMEGYFEKDREV 305 (782)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~~~~ 305 (782)
....................+..+|..++.+ .+..+. ..+.+..+ .+...++.... =.+
T Consensus 209 --------a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~--~~~~~~ia~~l-----g~~---- 268 (305)
T TIGR00635 209 --------AQVRGQKIINRDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG--PVGLKTLAAAL-----GED---- 268 (305)
T ss_pred --------HHHcCCCCcCHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC--cccHHHHHHHh-----CCC----
Confidence 0000000000000001111145567888885 666554 44555433 24443332211 111
Q ss_pred HHHHHHHHHHHHHHH-HHHhccCceec
Q 039334 306 FELEKAYRKAHGALM-DLIDRGILKAQ 331 (782)
Q Consensus 306 ~~~e~~~~~~~~~l~-~L~~r~l~~~~ 331 (782)
...++..++ .|++++++...
T Consensus 269 ------~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 269 ------ADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred ------cchHHHhhhHHHHHcCCcccC
Confidence 023445567 69999999643
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.86 E-value=8.8e-09 Score=103.55 Aligned_cols=204 Identities=19% Similarity=0.161 Sum_probs=101.3
Q ss_pred hhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHH--------
Q 039334 4 ERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAI-------- 75 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i-------- 75 (782)
+|.. ++.++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. . +..+ .++|+...+...... ...+
T Consensus 2 ~gR~-~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~ 76 (234)
T PF01637_consen 2 FGRE-KELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESS-LRSFIEETSLAD 76 (234)
T ss_dssp -S-H-HHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHC
T ss_pred CCHH-HHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhH-HHHHHHHHHHHH
Confidence 4556 889999999988778899999999999999999999972 1 1112 334554433332211 1111
Q ss_pred --HHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc--chhHHHHhhhhhhhhcCC
Q 039334 76 --SRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM--DENELVKEASSDFKNLLP 151 (782)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~p 151 (782)
.+.+............ . ..........+.+.++.+...+++.+||+||+..... .+....-..+..+.+..+
T Consensus 77 ~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKI---S-KDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HCHHHHHHHCCTSTTEEE---E-CTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHhhhcccccchhh---h-hcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 1111110000000000 0 0011112233333333333346669999999987620 011111222333333222
Q ss_pred CCCCCCcEEEEEeecc---c---c----C--CCeeecCCCCHHHHHHHHHhhhcccc---chhHHHHHHHHhcCCcHHHH
Q 039334 152 SVQPDHLKIIMTRRTT---K---Q----S--GKVIKFPSMSTEESLNLLKNEFSDHQ---VSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 152 ~~~~~gs~IivTTr~~---~---~----~--~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~~~~~~i~~~c~glPlai 216 (782)
.. ...+.|+++|... . . . ...+.+++|+.+++++++...+.... ..++..++|...++|.|..|
T Consensus 153 ~~-~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 153 SQ-QNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHH
T ss_pred cc-CCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHH
Confidence 21 2335565555532 1 0 0 15599999999999999999544332 24566799999999999877
Q ss_pred H
Q 039334 217 T 217 (782)
Q Consensus 217 ~ 217 (782)
.
T Consensus 232 ~ 232 (234)
T PF01637_consen 232 Q 232 (234)
T ss_dssp H
T ss_pred h
Confidence 5
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=2.9e-09 Score=98.96 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=50.1
Q ss_pred CCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l 494 (782)
..+++.|++.++.+..+... .+.+|+.|++++|.+.. ++.+..+++|+.|++++|. +..+++.+...+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence 34567777777777665433 56788888888888754 4568888999999999985 78887655456899999999
Q ss_pred cCCCCCCCCC---CCCCCCCcEEEccCCCCCCCCCC-----ccCCCcccEEEcc
Q 039334 495 SRCPMKSLPS---LPKLTKLRFLILRQCSCLEYMPS-----LKELHELEIIDLS 540 (782)
Q Consensus 495 ~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~ 540 (782)
++|.+..+.. +..+++|+.|++.+|+.... +. +..+|+|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 9998877665 77889999999999876543 32 3677777777654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.6e-10 Score=112.77 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=97.9
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-----CCCCccEEEEecCCCCCCCcc--ccCCC
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-----SFERLTVLVLRNCDMLEDITG--IKELK 462 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~--l~~l~ 462 (782)
+...+++.+.+.+......-.....+.+++++.|+++.|=+..+-+. .+|+|+.|+|+.|.+...... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 45566777777766544322224455677777777777766555332 677777777777765433321 23466
Q ss_pred CCcEEEeecCCCCCC-CchHHhcCCCCccEEEccCCCCCCCC-C-CCCCCCCcEEEccCCCCCCCC--CCccCCCcccEE
Q 039334 463 TLSVLEISGASSLKS-NPDELFDGMAQLQSLNLSRCPMKSLP-S-LPKLTKLRFLILRQCSCLEYM--PSLKELHELEII 537 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~-lp~~~~~~l~~L~~L~l~~~~l~~lp-~-l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L 537 (782)
+|+.|.++.|. +.. --..+...+++|+.|++..|....+. . ..-+..|+.|++++|++.... +..+.++.|+.|
T Consensus 198 ~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 77777777764 331 11122345677777777766311111 1 334566677777776654332 234666666666
Q ss_pred EccCCCCCCcccccc-----cCCCCCccEEEccCCCCCCCc
Q 039334 538 DLSGATSLSSFQQLD-----FSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 538 ~l~~~~~~~~~~~~~-----l~~l~~L~~L~l~~~~~~~l~ 573 (782)
+++.+...+...+.. ...+++|+.|++..|++..++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 666555321111111 133455555555555554443
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.80 E-value=1.3e-07 Score=99.56 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=81.5
Q ss_pred cEEEEEeecccc-------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHHHHhhccc
Q 039334 158 LKIIMTRRTTKQ-------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQ 228 (782)
Q Consensus 158 s~IivTTr~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~ 228 (782)
+-|..|||.... ....+++++++.++..+++.+..+. -...++....|++.|+|.|-.+..+...+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~---- 227 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVR---- 227 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHH----
Confidence 456666665422 2256899999999999999984332 234567899999999999964443333221
Q ss_pred cchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhh-hhhccccCCccccHHHHHHHHHHcCCCCCchhhHH
Q 039334 229 RDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFW-HSIQFFRKYRSIHYNVLITHWIMEGYFEKDREVFE 307 (782)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~~~~~~ 307 (782)
.+...-................+...|..|+.. .+..+. ....|+.+. +....+.... -.+
T Consensus 228 ----~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~--~~~~~~a~~l-----g~~------ 289 (328)
T PRK00080 228 ----DFAQVKGDGVITKEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGGP--VGLDTLAAAL-----GEE------ 289 (328)
T ss_pred ----HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCCc--eeHHHHHHHH-----CCC------
Confidence 111000000000000111123345667788874 666664 555666553 5554442221 111
Q ss_pred HHHHHHHHHHHHH-HHHhccCceecc
Q 039334 308 LEKAYRKAHGALM-DLIDRGILKAQD 332 (782)
Q Consensus 308 ~e~~~~~~~~~l~-~L~~r~l~~~~~ 332 (782)
...+++.++ .|++.+|++...
T Consensus 290 ----~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 290 ----RDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred ----cchHHHHhhHHHHHcCCcccCC
Confidence 122333445 789999996433
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=3.8e-09 Score=98.21 Aligned_cols=120 Identities=32% Similarity=0.452 Sum_probs=51.7
Q ss_pred CccEEEecCCCCCCCCCcCC-CCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCC-CC-CCCCcccEEeccc
Q 039334 636 SLSELYLRKCSALEHLPLTT-ALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLP-EM-KGLEKLEELRLSG 710 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~~~-~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~-~~-~~l~~L~~L~l~~ 710 (782)
++++|+|.+| .+..+..++ .+.+|+.|++++|.++.++. .++.|+.|++++| .++.+. .+ ..+|+|++|++++
T Consensus 20 ~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccc-ccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC
Confidence 6888999987 555565554 57889999999999998876 7889999999988 566664 33 3689999999998
Q ss_pred CCCCCCCCC---CCCCCCcCEEeccCCCCCCCC----hhhhCCCCCCcccEEeCC
Q 039334 711 CINLTELPN---LNDFPKLDLLDISNTGIREIP----DEILELSRPKIIREVDEE 758 (782)
Q Consensus 711 c~~l~~l~~---~~~l~~L~~L~l~~~~l~~lp----~~~~~l~~L~~L~~l~~~ 758 (782)
| .+..+.. +..+|+|+.|++.+|+++.-+ .-+..+|+|+.|..-.+.
T Consensus 98 N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 98 N-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp S----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred C-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 7 6666655 677899999999999887433 346778888877654433
No 36
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.71 E-value=1.9e-07 Score=101.45 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=100.8
Q ss_pred chhhhhhhhHHH---HHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 2 DSERVASSQKEK---ISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 2 ~~~~~~~~~~~~---l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
|+||-+ +.+.+ +.+++..+..+.+.++|++|+||||+|+.+++. ....| +.++....-.+-+++++++
T Consensus 13 d~vGq~-~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~---~~~~~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 13 EVVGQE-HLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA---TDAPF-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HhcCcH-HHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH---hCCCE-----EEEecccccHHHHHHHHHH
Confidence 456655 44333 777777777778889999999999999999987 22222 2222221112222233322
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCc
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHL 158 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs 158 (782)
... .. ..+++.+|++|+++.- .. ...+.++..+. .|.
T Consensus 84 ~~~----------------------------~~----~~g~~~vL~IDEi~~l--~~-----~~q~~LL~~le----~~~ 120 (413)
T PRK13342 84 ARQ----------------------------RR----SAGRRTILFIDEIHRF--NK-----AQQDALLPHVE----DGT 120 (413)
T ss_pred HHH----------------------------hh----hcCCceEEEEechhhh--CH-----HHHHHHHHHhh----cCc
Confidence 211 00 1467889999999965 21 12233332222 344
Q ss_pred EEEE--Eeeccc--cC------CCeeecCCCCHHHHHHHHHhhhccc-----cchhHHHHHHHHhcCCcHHHHHHHHH
Q 039334 159 KIIM--TRRTTK--QS------GKVIKFPSMSTEESLNLLKNEFSDH-----QVSGELFEFIAEKGRRSPAAITMIAK 221 (782)
Q Consensus 159 ~Iiv--TTr~~~--~~------~~~~~l~~L~~~~~~~Lf~~~~~~~-----~~~~~~~~~i~~~c~glPlai~~~~~ 221 (782)
.+++ ||.+.. +. ...+.+.+++.++...++++++... ...++....|++.|+|.+..+.-+-.
T Consensus 121 iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 121 ITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred EEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4444 344431 11 1678999999999999999854321 33456788899999999876654433
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=2.5e-08 Score=108.71 Aligned_cols=173 Identities=32% Similarity=0.442 Sum_probs=105.7
Q ss_pred CCCccEEEccCCCCCCCcCcCCCC--cccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCC
Q 039334 556 HTNLQMVDLSYTQIPWLPKFTDLK--HLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFL 633 (782)
Q Consensus 556 l~~L~~L~l~~~~~~~l~~~~~l~--~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~ 633 (782)
.+.+..+++.++++..++....+. +|+.|+++.+........+..+++|+.|+++.|.+..
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~----------------- 177 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD----------------- 177 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh-----------------
Confidence 355666666666666665433322 5556665554433332344555555555555554433
Q ss_pred CCCccEEEecCCCCCCCCCcCC-CCCCCCEEEeecCCCcccccc--ccc-cceeeccccccCCCCCCCCCCCcccEEecc
Q 039334 634 PCSLSELYLRKCSALEHLPLTT-ALKNLELLDLSNTNLKKLPSE--LCN-LRKLLLNNCLSLTKLPEMKGLEKLEELRLS 709 (782)
Q Consensus 634 ~~~L~~L~l~~~~~l~~l~~~~-~l~~L~~L~L~~~~l~~l~~~--l~~-L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~ 709 (782)
+|... ..++|+.|++++|.+..+|.. .++ |++|.++++.....+..+..+.++..+.+.
T Consensus 178 -----------------l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 178 -----------------LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred -----------------hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccC
Confidence 33322 556777777777777777772 444 777777777544444456677777777766
Q ss_pred cCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCcc
Q 039334 710 GCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVNR 767 (782)
Q Consensus 710 ~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~ 767 (782)
++ .+..++. +..+++|+.|++++|.++.++. +..+..++.+++++|.+..+..
T Consensus 241 ~n-~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 241 NN-KLEDLPESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred Cc-eeeeccchhccccccceecccccccccccc----ccccCccCEEeccCccccccch
Confidence 65 4544444 6677778888888887777765 4666667777888777766543
No 38
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.70 E-value=3.9e-07 Score=99.31 Aligned_cols=289 Identities=15% Similarity=0.130 Sum_probs=154.0
Q ss_pred hhhhhhhhHHHHHHHhhc----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 3 SERVASSQKEKISELLKE----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
++|.+ ++.+++...+.+ +..+.+.|+|++|+|||++++.++++... ....-.+++|......+...++..++++
T Consensus 32 l~~Re-~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 32 LPHRE-EQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCHH-HHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 34555 888888888733 23456789999999999999999987222 1212345677766666778889999998
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc-cchhHHHHhhhhhhhhcCCCCCCCC
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE-MDENELVKEASSDFKNLLPSVQPDH 157 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g 157 (782)
+.....+.. ..+.++....+.+.+ .-.+++.+||||+++.-. ....+ .+..+....... .+
T Consensus 110 l~~~~~~~~---------~~~~~~~~~~~~~~l---~~~~~~~viviDE~d~l~~~~~~~----~l~~l~~~~~~~--~~ 171 (394)
T PRK00411 110 LFGHPPPSS---------GLSFDELFDKIAEYL---DERDRVLIVALDDINYLFEKEGND----VLYSLLRAHEEY--PG 171 (394)
T ss_pred hcCCCCCCC---------CCCHHHHHHHHHHHH---HhcCCEEEEEECCHhHhhccCCch----HHHHHHHhhhcc--CC
Confidence 865211000 111222333333331 113667899999998641 01111 122222212211 22
Q ss_pred cE--EEEEeeccccC------------CCeeecCCCCHHHHHHHHHhhhc----cccchhHHHHHHHHhc----CCcHHH
Q 039334 158 LK--IIMTRRTTKQS------------GKVIKFPSMSTEESLNLLKNEFS----DHQVSGELFEFIAEKG----RRSPAA 215 (782)
Q Consensus 158 s~--IivTTr~~~~~------------~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~i~~~c----~glPla 215 (782)
++ ||.+++..... ...+.+++++.++..+++...+. .....+++.+.|++.+ |..+.|
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 33 56665544211 14678999999999999887322 1223345555555555 446777
Q ss_pred HHHHHHHHhhc-----cccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhh-h-ccccC-CccccHH
Q 039334 216 ITMIAKALKKV-----VQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHS-I-QFFRK-YRSIHYN 287 (782)
Q Consensus 216 i~~~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~-a-~fp~~-~~~i~~~ 287 (782)
+.++-.+.... ..-....+...+... -.....-.+..||.+ +..|+++ + ....+ . .+...
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~-~~~~~ 319 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGD-EVTTG 319 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCC-cccHH
Confidence 76665433211 111222333333321 011223357889985 4444443 2 12211 2 35555
Q ss_pred HHHHH--HHHcCCC-CCchhhHHHHHHHHHHHHHHHHHHhccCceec
Q 039334 288 VLITH--WIMEGYF-EKDREVFELEKAYRKAHGALMDLIDRGILKAQ 331 (782)
Q Consensus 288 ~Li~~--Wiaegfi-~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~ 331 (782)
++... .+++.+- .+.. +.....|+++|.+.+++...
T Consensus 320 ~i~~~y~~l~~~~~~~~~~--------~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 320 EVYEEYKELCEELGYEPRT--------HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHHHcCCCcCc--------HHHHHHHHHHHHhcCCeEEE
Confidence 55433 2332221 1100 12234588999999998753
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.8e-09 Score=106.04 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=118.8
Q ss_pred cCCCCceEEEccCCCCCCCCh-hhHhcCCCCceEEEecCCCCCCCCcc----CCCCccEEEEecCCCCCC-C-ccccCCC
Q 039334 390 KKLREVLTLLIDGSRPCEEDH-STFFNLMPKLQVLAIFKPTFKSLMSS----SFERLTVLVLRNCDMLED-I-TGIKELK 462 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~L~L~~~~~~~~-~-~~l~~l~ 462 (782)
..+++++.|+++.|-+....+ ..++..+++|+.|+++.|.+.....+ .+++|+.|.|++|+++.. . .....+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 456788888888876543322 35556788888888888887665554 778888888888887632 1 2456688
Q ss_pred CCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCC-CCC------ccCCC
Q 039334 463 TLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS---LPKLTKLRFLILRQCSCLEY-MPS------LKELH 532 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~-~~~------~~~l~ 532 (782)
+|..|++.+|..+..-..+ ..-+..|+.|+|++|++...+. ++.++.|..|.++.|.+... .|+ ...++
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 8888888887433221111 1446788888888888776663 77888888888887764321 222 26677
Q ss_pred cccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCC
Q 039334 533 ELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPW 571 (782)
Q Consensus 533 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 571 (782)
+|+.|++..|....--....+..+++|+.|.+..+.+..
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888888888774111112345566777777776666553
No 40
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.67 E-value=5.5e-06 Score=89.28 Aligned_cols=296 Identities=15% Similarity=0.119 Sum_probs=150.9
Q ss_pred chhhhhhhhHHHHHHHhhc---C-CceEEEEEcCCCchhHHHHHHHhhccccccccc---ceEEEEEcccccchhHHHHH
Q 039334 2 DSERVASSQKEKISELLKE---D-GRSTIILIGDPGLWKTWLEREISKNKVIASSSC---YTTLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~---~-~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~ 74 (782)
+++|-+ +++++|..+|.+ + ..+.+.|+|++|+|||++++++++.-....... -.++|+......+...++..
T Consensus 16 ~l~gRe-~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 16 RIVHRD-EQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCcH-HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 356766 899999999853 3 345789999999999999999998622111110 13477777666677788899
Q ss_pred HHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhc--CCC
Q 039334 75 ISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNL--LPS 152 (782)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~--~p~ 152 (782)
|++++.... ... +.. ..+..+....+.+.+ .-.+++++||||+++.-.....+ .+..+..+ .+.
T Consensus 95 i~~~l~~~~--~~~--~~~---~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~~~~----~L~~l~~~~~~~~ 160 (365)
T TIGR02928 95 LANQLRGSG--EEV--PTT---GLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGDDDD----LLYQLSRARSNGD 160 (365)
T ss_pred HHHHHhhcC--CCC--CCC---CCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccCCcH----HHHhHhccccccC
Confidence 998884200 000 000 011111222222221 11367889999999864111111 12222221 011
Q ss_pred CCCCCcEEEEEeecccc--------C----CCeeecCCCCHHHHHHHHHhhhc----cccchhH---HHHHHHHhcCCcH
Q 039334 153 VQPDHLKIIMTRRTTKQ--------S----GKVIKFPSMSTEESLNLLKNEFS----DHQVSGE---LFEFIAEKGRRSP 213 (782)
Q Consensus 153 ~~~~gs~IivTTr~~~~--------~----~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~---~~~~i~~~c~glP 213 (782)
.....-.+|.+|+.... . ...+.+++.+.++..+++...+. .....++ ....++....|.|
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 11122345555544311 0 14678999999999999988332 1112223 3445666667887
Q ss_pred HH-HHHHHHHH--hhc---cccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhcc--ccCCcccc
Q 039334 214 AA-ITMIAKAL--KKV---VQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQF--FRKYRSIH 285 (782)
Q Consensus 214 la-i~~~~~~l--~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~f--p~~~~~i~ 285 (782)
-. +.++-.+. ... ..-+...+...+.... .....-....||.+ .|..+..++.. ..+. .+.
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~---------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~-~~~ 309 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE---------KDRLLELIRGLPTH-SKLVLLAIANLAANDED-PFR 309 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCC-Ccc
Confidence 43 33332222 111 1111122222222110 11123356688875 55333333211 1333 466
Q ss_pred HHHHHHHHH--HcCC-CCCchhhHHHHHHHHHHHHHHHHHHhccCceec
Q 039334 286 YNVLITHWI--MEGY-FEKDREVFELEKAYRKAHGALMDLIDRGILKAQ 331 (782)
Q Consensus 286 ~~~Li~~Wi--aegf-i~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~ 331 (782)
..++...+- ++.+ +.+. .+.....+++.|...|++...
T Consensus 310 ~~~~~~~y~~~~~~~~~~~~--------~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 310 TGEVYEVYKEVCEDIGVDPL--------TQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHHHHhcCCeEEE
Confidence 777766332 2221 2221 113455688888888888754
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.8e-07 Score=94.95 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=101.4
Q ss_pred HHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhh
Q 039334 12 EKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEE 91 (782)
Q Consensus 12 ~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 91 (782)
..|.+++..+....+.+||++|+||||||+.+.+. .+..| ..++...+-..-++.++++.....
T Consensus 37 ~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~---~~~~f-----~~~sAv~~gvkdlr~i~e~a~~~~-------- 100 (436)
T COG2256 37 KPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT---TNAAF-----EALSAVTSGVKDLREIIEEARKNR-------- 100 (436)
T ss_pred chHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh---hCCce-----EEeccccccHHHHHHHHHHHHHHH--------
Confidence 34556667778888999999999999999999997 33333 444444444444555665543211
Q ss_pred hhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEE--Eeeccc-
Q 039334 92 QEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIM--TRRTTK- 168 (782)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~Iiv--TTr~~~- 168 (782)
..|+|.+|++|.|..- .+. -.+.+ ||... .|.-|+| ||.++.
T Consensus 101 ------------------------~~gr~tiLflDEIHRf-------nK~-QQD~l--Lp~vE-~G~iilIGATTENPsF 145 (436)
T COG2256 101 ------------------------LLGRRTILFLDEIHRF-------NKA-QQDAL--LPHVE-NGTIILIGATTENPSF 145 (436)
T ss_pred ------------------------hcCCceEEEEehhhhc-------Chh-hhhhh--hhhhc-CCeEEEEeccCCCCCe
Confidence 3589999999999853 122 23333 47654 6655555 666662
Q ss_pred -cC------CCeeecCCCCHHHHHHHHHhhhccc----c-----chhHHHHHHHHhcCCcHH
Q 039334 169 -QS------GKVIKFPSMSTEESLNLLKNEFSDH----Q-----VSGELFEFIAEKGRRSPA 214 (782)
Q Consensus 169 -~~------~~~~~l~~L~~~~~~~Lf~~~~~~~----~-----~~~~~~~~i~~~c~glPl 214 (782)
+. ..++.+++|+.++-.+++++|.... + -.++....++..++|---
T Consensus 146 ~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 146 ELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 21 2899999999999999999953221 1 123567778888888753
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=6.7e-07 Score=88.74 Aligned_cols=150 Identities=14% Similarity=0.226 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
..+.+.++|++|+|||+|++++++. ...+ ...+.++++.... ....++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~-~~~~--~~~~~y~~~~~~~---~~~~~~-------------------------- 85 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNH-YLLN--QRTAIYIPLSKSQ---YFSPAV-------------------------- 85 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HHHc--CCCeEEeeHHHhh---hhhHHH--------------------------
Confidence 3457899999999999999999998 2212 2345677653210 000011
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCCCc-cchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc----------c-
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGINE-MDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK----------Q- 169 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~----------~- 169 (782)
+..+ .+.-+|||||+|... ..+|+. . +...+......|+.|||+|.+.. .
T Consensus 86 -----~~~~-------~~~dlLilDDi~~~~~~~~~~~---~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~ 147 (229)
T PRK06893 86 -----LENL-------EQQDLVCLDDLQAVIGNEEWEL---A---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLA 147 (229)
T ss_pred -----Hhhc-------ccCCEEEEeChhhhcCChHHHH---H---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHH
Confidence 1111 223589999999641 123321 1 11111111124566655544431 1
Q ss_pred ----CCCeeecCCCCHHHHHHHHHh-hhcc-ccchhHHHHHHHHhcCCcHHHHHHHHH
Q 039334 170 ----SGKVIKFPSMSTEESLNLLKN-EFSD-HQVSGELFEFIAEKGRRSPAAITMIAK 221 (782)
Q Consensus 170 ----~~~~~~l~~L~~~~~~~Lf~~-~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~ 221 (782)
.+..+++++++.++.++++++ +... -.-++++..-|++++.|..-++..+=.
T Consensus 148 sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 148 SRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 125889999999999999998 5433 345668899999999988766544333
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=1.6e-09 Score=113.46 Aligned_cols=186 Identities=26% Similarity=0.358 Sum_probs=143.0
Q ss_pred cEEEccCCCCCCCc-CcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCcc
Q 039334 560 QMVDLSYTQIPWLP-KFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLS 638 (782)
Q Consensus 560 ~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~ 638 (782)
...+++.|.+..+| ....+..|..+.+..|........+.++..|.+|+|+.|.++.++..... .-|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~-----------lpLk 146 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCD-----------LPLK 146 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhc-----------Ccce
Confidence 44566777777776 45556667777777766666666788888888888888887765432211 2578
Q ss_pred EEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc---cccccceeeccccccCCCCC-CCCCCCcccEEecccCCC
Q 039334 639 ELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS---ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCIN 713 (782)
Q Consensus 639 ~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~---~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~ 713 (782)
.|.+++| +++.+|. ++.++.|..|+.+.|.+..+|. ++.+|+.|.+..| .+..+| ++..+ .|.+|++++| +
T Consensus 147 vli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfScN-k 222 (722)
T KOG0532|consen 147 VLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSCN-K 222 (722)
T ss_pred eEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeecccC-c
Confidence 8888876 6777776 7788899999999999999888 6778888888887 456666 56644 4889999866 8
Q ss_pred CCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCC
Q 039334 714 LTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETN 760 (782)
Q Consensus 714 l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n 760 (782)
+..+|. |..|..|++|.|.+|++.+-|..++-......++.|+..-.
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 999998 99999999999999999999999988888888888877644
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=98.61 E-value=6.5e-06 Score=91.43 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=133.5
Q ss_pred chhhhhhhhHHHHHHHhhc---CC-ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKE---DG-RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISR 77 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~---~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 77 (782)
|++|-+ +.++++.+|+.. +. .+.+.|+|++|+||||+|+++++. . .++ ++-+..++..+ .+....++.
T Consensus 15 dlvg~~-~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e---l--~~~-~ielnasd~r~-~~~i~~~i~ 86 (482)
T PRK04195 15 DVVGNE-KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND---Y--GWE-VIELNASDQRT-ADVIERVAG 86 (482)
T ss_pred HhcCCH-HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH---c--CCC-EEEEccccccc-HHHHHHHHH
Confidence 567777 888999999853 22 567889999999999999999998 2 233 23344443222 222233332
Q ss_pred hhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccC-ceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 78 QALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDK-KNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
..... .. +.+ ++-+||+|+++..... . ...++..+...+. ..
T Consensus 87 ~~~~~-------------------------~s------l~~~~~kvIiIDEaD~L~~~-~--d~~~~~aL~~~l~---~~ 129 (482)
T PRK04195 87 EAATS-------------------------GS------LFGARRKLILLDEVDGIHGN-E--DRGGARAILELIK---KA 129 (482)
T ss_pred Hhhcc-------------------------Cc------ccCCCCeEEEEecCcccccc-c--chhHHHHHHHHHH---cC
Confidence 22110 00 222 6679999999865210 0 0112333333333 23
Q ss_pred CcEEEEEeecccc--------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHHHHhhc
Q 039334 157 HLKIIMTRRTTKQ--------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAKALKKV 226 (782)
Q Consensus 157 gs~IivTTr~~~~--------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 226 (782)
+..||+|+.+... ....+.+++++.++....+.+.+.. -...+++...|++.++|..-.+...-..+...
T Consensus 130 ~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~ 209 (482)
T PRK04195 130 KQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEG 209 (482)
T ss_pred CCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3568888866411 1267889999999988888873322 23456788999999999876655443333332
Q ss_pred cc-cchhHHHHHHhhccccCCCCcccchhhhcccC-CCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCCCC
Q 039334 227 VQ-RDSRDLASAIGKAAYYEKPDRGVNELISCAYD-MLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFEK 301 (782)
Q Consensus 227 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~-~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~~ 301 (782)
.. -+...+..... .....+++.++..-+. .-+.. ....+.. . .++. +.+-.|+.|.+...
T Consensus 210 ~~~it~~~v~~~~~-----~d~~~~if~~l~~i~~~k~~~~-a~~~~~~-------~-~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 210 YGKLTLEDVKTLGR-----RDREESIFDALDAVFKARNADQ-ALEASYD-------V-DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CCCCcHHHHHHhhc-----CCCCCCHHHHHHHHHCCCCHHH-HHHHHHc-------c-cCCH-HHHHHHHHhccccc
Confidence 21 11112221211 1223445555543332 22222 3332221 1 2333 35678999999865
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=1.7e-09 Score=113.19 Aligned_cols=164 Identities=23% Similarity=0.299 Sum_probs=84.0
Q ss_pred eEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC
Q 039334 421 QVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 498 (782)
...+++.|.+..+|.. .|..|..+.+..|.+...+..+.++..|.+|+|+.|. +..+|..+ + .--|+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~l-C-~lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGL-C-DLPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhh-h-cCcceeEEEecCc
Confidence 3344455555544444 4455555555555555555555555555555555553 55555544 2 2335555555555
Q ss_pred CCCCCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc-CcC
Q 039334 499 MKSLPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP-KFT 576 (782)
Q Consensus 499 l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~ 576 (782)
++.+|. ++.+..|.+|+.+.|.+....+.++.+.+|+.|.+..|.. ... +..+. .-.|..|++++|++..+| .|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~l-p~El~-~LpLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDL-PEELC-SLPLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhC-CHHHh-CCceeeeecccCceeecchhhh
Confidence 555555 5555555555555555443333455555555555555442 121 12222 223555555555555555 455
Q ss_pred CCCcccEEEecCcC
Q 039334 577 DLKHLSRILLRGCR 590 (782)
Q Consensus 577 ~l~~L~~L~l~~~~ 590 (782)
.+.+|++|.+.+|+
T Consensus 232 ~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 232 KMRHLQVLQLENNP 245 (722)
T ss_pred hhhhheeeeeccCC
Confidence 55555555555544
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.60 E-value=1.5e-06 Score=86.71 Aligned_cols=163 Identities=15% Similarity=0.230 Sum_probs=100.2
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhh
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
...+++.+++.....+.+.|+|++|+|||+||+.+++... ......++++++.-.+.. ..++.
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~~~---~~~~~----------- 86 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQAD---PEVLE----------- 86 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHHhH---HHHHh-----------
Confidence 5677777776655667899999999999999999998722 223344666653322110 01110
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccc-hhH-HHHhhhhhhhhcCCCCCCCCcEEEEEeec
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMD-ENE-LVKEASSDFKNLLPSVQPDHLKIIMTRRT 166 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~-~~~-~~~~~~~~~~~~~p~~~~~gs~IivTTr~ 166 (782)
. +++ .-+|||||++.-... .|. .....++... ..+.+||+||+.
T Consensus 87 ---------------------~-----~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~-------~~~~~iIits~~ 132 (226)
T TIGR03420 87 ---------------------G-----LEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVR-------EAGGRLLIAGRA 132 (226)
T ss_pred ---------------------h-----ccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHH-------HcCCeEEEECCC
Confidence 0 122 238999999864211 221 1111122221 233579998885
Q ss_pred cc----cC----------CCeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcHHHHHHHHHH
Q 039334 167 TK----QS----------GKVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSPAAITMIAKA 222 (782)
Q Consensus 167 ~~----~~----------~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~ 222 (782)
.. .. ...+++++++.++...++..... .-...++..+.|++.+.|.|..+.-+-..
T Consensus 133 ~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 133 APAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 41 11 24788999999999998887322 22345677888999999999877655443
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.59 E-value=2.6e-07 Score=91.83 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=111.2
Q ss_pred chhhhhh--hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhh
Q 039334 2 DSERVAS--SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~--~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
|.||=+. .+-.-|.+++.+++.+.+.+||++|+||||||+.+...... .. +-+|..|..-.-..-+++|+++.
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~--~S---yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK--HS---YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC--Cc---eEEEEEeccccchHHHHHHHHHH
Confidence 3444442 23455677778889999999999999999999999998222 12 35777777666666677788775
Q ss_pred ccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCC--
Q 039334 80 LCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDH-- 157 (782)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~g-- 157 (782)
..+. .+.++|..|++|.|..= ++. -.++. +|... .|
T Consensus 214 q~~~-------------------------------~l~krkTilFiDEiHRF-------Nks-QQD~f--LP~VE-~G~I 251 (554)
T KOG2028|consen 214 QNEK-------------------------------SLTKRKTILFIDEIHRF-------NKS-QQDTF--LPHVE-NGDI 251 (554)
T ss_pred HHHH-------------------------------hhhcceeEEEeHHhhhh-------hhh-hhhcc--cceec-cCce
Confidence 5421 15788999999998742 122 23333 58765 55
Q ss_pred cEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhc---ccc-------c-----hhHHHHHHHHhcCCcH
Q 039334 158 LKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFS---DHQ-------V-----SGELFEFIAEKGRRSP 213 (782)
Q Consensus 158 s~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~---~~~-------~-----~~~~~~~i~~~c~glP 213 (782)
.-|=-||.++.-. ..++.|++|..++...++.++.. +.. . ...+..-++..|+|-.
T Consensus 252 ~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 252 TLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 4445578777321 27889999999999999998432 211 1 1135566777888864
No 48
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.59 E-value=3e-06 Score=94.17 Aligned_cols=296 Identities=16% Similarity=0.171 Sum_probs=178.6
Q ss_pred HHHHHHHhhcC-CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCchhh
Q 039334 11 KEKISELLKED-GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 11 ~~~l~~~l~~~-~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
+.++...|.++ +.+++.|..|+|-|||||+...... .. .--.+.|.+....- +...+...++..+....++..+
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~-~~---~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWREL-AA---DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHh-cC---cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 56788888776 6789999999999999999999874 22 23468999996544 6688888888887743321111
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK 168 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~ 168 (782)
+-+..........+...+...++++.--.++..+||||-.-. ....+.....-+....| .+-..|||||...
T Consensus 100 -~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli---~~~~l~~~l~fLl~~~P----~~l~lvv~SR~rP 171 (894)
T COG2909 100 -EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLI---SDPALHEALRFLLKHAP----ENLTLVVTSRSRP 171 (894)
T ss_pred -HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEecccccc---CcccHHHHHHHHHHhCC----CCeEEEEEeccCC
Confidence 111111122223333444444444443488899999995532 22334556666665455 5688999999984
Q ss_pred c---CC-----CeeecC----CCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHHHHHHhhccccchhHHHH
Q 039334 169 Q---SG-----KVIKFP----SMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQRDSRDLAS 236 (782)
Q Consensus 169 ~---~~-----~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~~~~~~ 236 (782)
. +. ..++++ -++.+|+.++|....+. +-.+.-.+.+.+..+|=+-|+..++-.++++. +.... ..
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~-~~~q~-~~ 248 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-PLDAADLKALYDRTEGWAAALQLIALALRNNT-SAEQS-LR 248 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-CCChHHHHHHHhhcccHHHHHHHHHHHccCCC-cHHHH-hh
Confidence 3 22 344444 37889999999974322 22233478888999999999988888887222 21111 11
Q ss_pred HHhhccccCCCCcccc-hhhhcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCCCCchhhHHHHHHHHHH
Q 039334 237 AIGKAAYYEKPDRGVN-ELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFEKDREVFELEKAYRKA 315 (782)
Q Consensus 237 ~l~~~~~~~~~~~~~~-~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~~~~~~~e~~~~~~ 315 (782)
.+... ...+. -...-=++.||++ +|.-.+-||+++.-. .+|+..-.+ ++.|
T Consensus 249 ~LsG~------~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~-----~eL~~~Ltg----------------~~ng 300 (894)
T COG2909 249 GLSGA------ASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFN-----DELCNALTG----------------EENG 300 (894)
T ss_pred hccch------HHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhh-----HHHHHHHhc----------------CCcH
Confidence 11100 00000 0111236789997 999999999987532 234333221 1345
Q ss_pred HHHHHHHHhccCceeccCcceehhhhhHhhhhhhh
Q 039334 316 HGALMDLIDRGILKAQDVNIVVMEGAALNMIDSRR 350 (782)
Q Consensus 316 ~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (782)
...+++|..++++-..-++. .--+..|.++.++-
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~-~~WfryH~LFaeFL 334 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDE-GQWFRYHHLFAEFL 334 (894)
T ss_pred HHHHHHHHhCCCceeeecCC-CceeehhHHHHHHH
Confidence 66899999999886432222 12345566655443
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=5.6e-08 Score=106.03 Aligned_cols=171 Identities=24% Similarity=0.308 Sum_probs=101.6
Q ss_pred CCCceEEEecCCCCCCCCcc--CCC-CccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEE
Q 039334 417 MPKLQVLAIFKPTFKSLMSS--SFE-RLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLN 493 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~--~l~-~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~ 493 (782)
.+.+..|.+.++.+..+++. .+. +|+.|+++++.+...+..+..+++|+.|+++.|. +..+|... +.++.|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhh-hhhhhhhhee
Confidence 35667777777777666665 332 6777777777666555566677777777777764 66666653 4667777777
Q ss_pred ccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC
Q 039334 494 LSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 494 l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 572 (782)
+++|.+..+|. +..+..|+.|.+++|.....+..+..+.++..+.+.++..... +..+..+++++.|++++|.+..+
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceecccccccccc
Confidence 77777777776 5555567777777665444444455555665555554442111 23344555566666666655555
Q ss_pred cCcCCCCcccEEEecCcCC
Q 039334 573 PKFTDLKHLSRILLRGCRK 591 (782)
Q Consensus 573 ~~~~~l~~L~~L~l~~~~~ 591 (782)
+.++.+.+++.|+++++..
T Consensus 271 ~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 271 SSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccccCccCEEeccCccc
Confidence 5555555555555555433
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=2e-08 Score=96.92 Aligned_cols=223 Identities=22% Similarity=0.228 Sum_probs=143.3
Q ss_pred CCCCCCCcEEEccCCC-------CC-CCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 505 LPKLTKLRFLILRQCS-------CL-EYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 505 l~~l~~L~~L~l~~~~-------~~-~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+..+..|+.|.+++.. +. ..+|. +..+.+|..+.++.|.. ..+. ......+.|+++.+.+..+...|.+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~-~~~~~kptl~t~~v~~s~~~~~~~l 255 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIV-DIELLKPTLQTICVHNTTIQDVPSL 255 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hhee-ceeecCchhheeeeecccccccccc
Confidence 3345667777765532 11 11222 35566777777777652 1111 1112346788888777666555544
Q ss_pred CCCCcccEEEecCcCCCCC--CCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc
Q 039334 576 TDLKHLSRILLRGCRKLHI--LPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL 653 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~ 653 (782)
-....+....-..-...+. ...+.....|+++++++|.++.+....- +.+.++.|+++.| .+..+..
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvK----------L~Pkir~L~lS~N-~i~~v~n 324 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVK----------LAPKLRRLILSQN-RIRTVQN 324 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhh----------hccceeEEecccc-ceeeehh
Confidence 3333333222211111110 1123344568899999998876654321 2238899999987 4445555
Q ss_pred CCCCCCCCEEEeecCCCccccc---cccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCC---CCCCCCCcC
Q 039334 654 TTALKNLELLDLSNTNLKKLPS---ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELP---NLNDFPKLD 727 (782)
Q Consensus 654 ~~~l~~L~~L~L~~~~l~~l~~---~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~---~~~~l~~L~ 727 (782)
+..+++|+.|+|++|.++++.+ .+.+.++|.|+.| .++++..+..+-+|..|++++| ++..+. .++++|.|+
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE 402 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLE 402 (490)
T ss_pred hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHHhcccccccHHH
Confidence 7788899999999998887766 7888999999988 6788888888889999999988 555443 388899999
Q ss_pred EEeccCCCCCCCChh
Q 039334 728 LLDISNTGIREIPDE 742 (782)
Q Consensus 728 ~L~l~~~~l~~lp~~ 742 (782)
.|.+.+|+++.+|+.
T Consensus 403 ~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 403 TLRLTGNPLAGSVDY 417 (490)
T ss_pred HHhhcCCCccccchH
Confidence 999999998877644
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.3e-06 Score=89.57 Aligned_cols=172 Identities=14% Similarity=0.153 Sum_probs=111.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccc---cccccceEEEEEc-ccccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVI---ASSSCYTTLWINK-AEKYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 76 (782)
|++|-. ..++.+.+++..++.+ ...++|+.|+||||+|+.+++.-.. .+.++|...|... ++...+.+ .+++.
T Consensus 5 ~i~g~~-~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHE-NIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcH-HHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 678866 7788899999877665 5678999999999999999885221 2245666556542 23233333 33344
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
+.+.... ..+++-++|+|+++.. ....++.++..+..+ +.
T Consensus 83 ~~~~~~p--------------------------------~~~~~kv~iI~~ad~m-------~~~a~naLLK~LEep-p~ 122 (313)
T PRK05564 83 EEVNKKP--------------------------------YEGDKKVIIIYNSEKM-------TEQAQNAFLKTIEEP-PK 122 (313)
T ss_pred HHHhcCc--------------------------------ccCCceEEEEechhhc-------CHHHHHHHHHHhcCC-CC
Confidence 4332200 2355667777777654 123455555555543 36
Q ss_pred CcEEEEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHH
Q 039334 157 HLKIIMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 157 gs~IivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~ 217 (782)
++.+|++|.+.... ...+.+.++++++....+.+.+.. ..++.+..++..++|.|.-+.
T Consensus 123 ~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 123 GVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND--IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred CeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC--CCHHHHHHHHHHcCCCHHHHH
Confidence 68999999766322 278889999999998877765432 233457788999999886543
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=2e-09 Score=108.78 Aligned_cols=285 Identities=22% Similarity=0.227 Sum_probs=158.8
Q ss_pred CCccEEEEecCCCCCCC---ccccCCCCCcEEEeecCCCCCCC-chHHhcCCCCccEEEccCCC-CCC--CCC-CCCCCC
Q 039334 439 ERLTVLVLRNCDMLEDI---TGIKELKTLSVLEISGASSLKSN-PDELFDGMAQLQSLNLSRCP-MKS--LPS-LPKLTK 510 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~~~---~~l~~l~~L~~L~L~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~-l~~--lp~-l~~l~~ 510 (782)
..|+.|++.++.-...- ..-.+++++++|.+.+|..++.. -.++-..+++|++|++..|. ++. +.. ...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46777777777544432 23456777777777777644422 22333456777777777753 443 222 345677
Q ss_pred CcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC----cCCCCcccEEEe
Q 039334 511 LRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK----FTDLKHLSRILL 586 (782)
Q Consensus 511 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~----~~~l~~L~~L~l 586 (782)
|++|+++.|.-... .. ....+..+.+++.+...+|.-..+.. -..+..+.++++
T Consensus 218 L~~lNlSwc~qi~~-~g---------------------v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG-NG---------------------VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHHhhhccCchhhc-Cc---------------------chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 77777777653322 00 00111222333333333332111111 112333444555
Q ss_pred cCcCCCCCCCC---CCCCCCCCEEEcccCC-CCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc---CCCCCC
Q 039334 587 RGCRKLHILPS---FQKLHSLKILDLSEVG-FSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL---TTALKN 659 (782)
Q Consensus 587 ~~~~~~~~~~~---l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~l~~ 659 (782)
..|..++.... -..+..|+.|+.+++. ++...-.. +..-..+|+.|.+++|....+.-. -.+.+.
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a--------Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA--------LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH--------HhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 55544433221 2245666777666632 22111111 111123777788887776555332 345677
Q ss_pred CCEEEeecCCCc------cccccccccceeeccccccCCCC-----C-CCCCCCcccEEecccCCCCCCCCC--CCCCCC
Q 039334 660 LELLDLSNTNLK------KLPSELCNLRKLLLNNCLSLTKL-----P-EMKGLEKLEELRLSGCINLTELPN--LNDFPK 725 (782)
Q Consensus 660 L~~L~L~~~~l~------~l~~~l~~L~~L~L~~~~~l~~l-----~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~ 725 (782)
|+.+++.++... .+....+.|+.|.++.|...++- . ...++..|+.+.+++|+.+++-.. +..+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 888888776433 33447888999999988766654 1 245678899999999988765443 678899
Q ss_pred cCEEeccCCC-CC--CCChhhhCCCCCCccc
Q 039334 726 LDLLDISNTG-IR--EIPDEILELSRPKIIR 753 (782)
Q Consensus 726 L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~ 753 (782)
|+.+++.+|. ++ .+.....++|+++...
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 9999999986 55 3545556677776554
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=5.3e-06 Score=88.48 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=102.1
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|-. +.++.+.+.+..++.+ .+.++|+.|+||||+|+.+.+.-... .... ..++........+.....
T Consensus 17 ~iiGq~-~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~-~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 17 DIIGQK-HIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ-NGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hccChH-HHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCCCHHHHHHhcCCC
Confidence 567776 7788888888777655 56899999999999999998863221 0000 011111111111111100
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +..+.+........+..++.+.+... ...+++-++|+|+++..+. ..++.++..+-.. +...++
T Consensus 88 ~---d~~~~~~~~~~~v~~ir~i~~~~~~~----p~~~~~kviIIDEa~~l~~-------~a~naLLk~lEe~-~~~~~f 152 (363)
T PRK14961 88 L---DLIEIDAASRTKVEEMREILDNIYYS----PSKSRFKVYLIDEVHMLSR-------HSFNALLKTLEEP-PQHIKF 152 (363)
T ss_pred C---ceEEecccccCCHHHHHHHHHHHhcC----cccCCceEEEEEChhhcCH-------HHHHHHHHHHhcC-CCCeEE
Confidence 0 00000000000000011111111111 0135566999999987521 1233333222221 234777
Q ss_pred EEEeeccc-cC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHH
Q 039334 161 IMTRRTTK-QS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 161 ivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
|++|.+.. .. ...+++.+++.++..+.+...+.. ....++....|++.++|.|-.+..
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 87776542 21 167899999999998888773322 234556788899999998864433
No 54
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.8e-06 Score=91.69 Aligned_cols=190 Identities=16% Similarity=0.160 Sum_probs=104.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|=+ +.++.|.+++..++.+ .+.++|++|+||||+|+.+++..... +.+...+|+|.+.. .+....
T Consensus 15 dvvGq~-~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc~--------~i~~~~- 83 (504)
T PRK14963 15 EVVGQE-HVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCL--------AVRRGA- 83 (504)
T ss_pred HhcChH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhhH--------HHhcCC-
Confidence 567766 6788888888877765 45899999999999999998873332 22222344432211 000000
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
+.+.-+.+...........++.+.+... ...+++-++|+|+++..+. ..+..+...+... .....+
T Consensus 84 --h~dv~el~~~~~~~vd~iR~l~~~~~~~----p~~~~~kVVIIDEad~ls~-------~a~naLLk~LEep-~~~t~~ 149 (504)
T PRK14963 84 --HPDVLEIDAASNNSVEDVRDLREKVLLA----PLRGGRKVYILDEAHMMSK-------SAFNALLKTLEEP-PEHVIF 149 (504)
T ss_pred --CCceEEecccccCCHHHHHHHHHHHhhc----cccCCCeEEEEECccccCH-------HHHHHHHHHHHhC-CCCEEE
Confidence 0000000000000000111111111111 0245667999999986521 2233333323221 134566
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
|++|... .+. ...+++.+++.++..+.+.+.+.. -...++....|++.++|.+--+
T Consensus 150 Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 150 ILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 6666543 221 268899999999999999984332 2335577899999999988544
No 55
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.6e-06 Score=94.90 Aligned_cols=176 Identities=11% Similarity=0.120 Sum_probs=105.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhccccccc----c--------------cceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASS----S--------------CYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~----~--------------f~~~~wv~~ 62 (782)
|+||=+ ..++.|.+++..++.+. +.++|+.|+||||+|+.+++.-..... . |--++++..
T Consensus 17 dIIGQe-~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 17 QMVGQS-HVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HhcCcH-HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 567777 77888888888877775 478999999999999999987332100 0 001122211
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+.... .+..+.|.+.+.. . ...+++-++|||++...+.. .
T Consensus 96 as~~k-VDdIReLie~v~~----------------------------~----P~~gk~KViIIDEAh~LT~e-------A 135 (944)
T PRK14949 96 ASRTK-VDDTRELLDNVQY----------------------------R----PSRGRFKVYLIDEVHMLSRS-------S 135 (944)
T ss_pred ccccC-HHHHHHHHHHHHh----------------------------h----hhcCCcEEEEEechHhcCHH-------H
Confidence 11011 1111222222111 1 02467779999999976222 2
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeeccc-cC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTTK-QS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glP 213 (782)
++.++..+-.. .++.++|++|.+.. +- ...+++++|+.++..+.+.+.+.. -...++....|++.++|.|
T Consensus 136 qNALLKtLEEP-P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 136 FNALLKTLEEP-PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSM 214 (944)
T ss_pred HHHHHHHHhcc-CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 33333222211 24477777776652 22 278899999999999988884432 2334567889999999988
Q ss_pred HHHHHH
Q 039334 214 AAITMI 219 (782)
Q Consensus 214 lai~~~ 219 (782)
-.+..+
T Consensus 215 R~ALnL 220 (944)
T PRK14949 215 RDALSL 220 (944)
T ss_pred HHHHHH
Confidence 544443
No 56
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.5e-06 Score=91.40 Aligned_cols=193 Identities=11% Similarity=0.096 Sum_probs=105.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ ..++.|.+++..++.+ .+-++|+.|+||||+|+.+++.-... . |+. ..++......+.+...-.
T Consensus 16 dVIGQe-~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~-~------~~~-~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 16 ELVGQN-HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE-T------GVT-STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-c------CCC-CCCCccCHHHHHHhcCCC
Confidence 577866 7788999999877755 56889999999999999998873221 0 111 111222222222221100
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+.. .....+++.+.+... ......+++-++|+|+|..-+.+. ...++..+-.. .++.++
T Consensus 87 p---DviEIDAA---s~~~VddIReli~~~-~y~P~~gk~KV~IIDEVh~LS~~A-------~NALLKtLEEP-P~~v~F 151 (702)
T PRK14960 87 I---DLIEIDAA---SRTKVEDTRELLDNV-PYAPTQGRFKVYLIDEVHMLSTHS-------FNALLKTLEEP-PEHVKF 151 (702)
T ss_pred C---ceEEeccc---ccCCHHHHHHHHHHH-hhhhhcCCcEEEEEechHhcCHHH-------HHHHHHHHhcC-CCCcEE
Confidence 0 00000000 000001111100000 000024666789999999762222 23333222221 245788
Q ss_pred EEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHH
Q 039334 161 IMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 161 ivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
|++|.+.. . ....+++.+++.++..+.+.+.+.. -...++....|++.++|.+-.+..
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 88887652 1 1278889999999999988884433 234456788999999998755443
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=2e-08 Score=99.58 Aligned_cols=230 Identities=23% Similarity=0.234 Sum_probs=108.7
Q ss_pred CCCCccEEEEecCCCCCC-----CccccCCCCCcEEEeecCCCCC----CCchHH------hcCCCCccEEEccCCCCC-
Q 039334 437 SFERLTVLVLRNCDMLED-----ITGIKELKTLSVLEISGASSLK----SNPDEL------FDGMAQLQSLNLSRCPMK- 500 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~-----~~~l~~l~~L~~L~L~~~~~~~----~lp~~~------~~~l~~L~~L~l~~~~l~- 500 (782)
.+..++.+++++|.+... -+.+.+.+.|+..+++.. ..+ .+|+.+ +..+++|++|+||+|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344555555555544222 123455556666666553 122 223222 124457777777777543
Q ss_pred -CCCC----CCCCCCCcEEEccCCCCCCCC--------------CCccCCCcccEEEccCCCCCCcc---cccccCCCCC
Q 039334 501 -SLPS----LPKLTKLRFLILRQCSCLEYM--------------PSLKELHELEIIDLSGATSLSSF---QQLDFSSHTN 558 (782)
Q Consensus 501 -~lp~----l~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~ 558 (782)
.++. +..+..|++|++.+|.+...- ...++-+.|+++...+|+..... ....+..++.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 2332 556777777777777542210 01233344555554444421110 0112334445
Q ss_pred ccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCcc
Q 039334 559 LQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLS 638 (782)
Q Consensus 559 L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~ 638 (782)
|+.+.+..|.+..-.- .-....+..+++|+.|+|..|-++..+...+.. .+++|+ +|+
T Consensus 187 leevr~~qN~I~~eG~-----------------~al~eal~~~~~LevLdl~DNtft~egs~~Lak----aL~s~~-~L~ 244 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGV-----------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAK----ALSSWP-HLR 244 (382)
T ss_pred cceEEEecccccCchh-----------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHH----Hhcccc-hhe
Confidence 5555555444331000 000012445555555555555555444333321 123333 566
Q ss_pred EEEecCCCCCCCCC-----c-CCCCCCCCEEEeecCCCccc-------cc-cccccceeeccccc
Q 039334 639 ELYLRKCSALEHLP-----L-TTALKNLELLDLSNTNLKKL-------PS-ELCNLRKLLLNNCL 689 (782)
Q Consensus 639 ~L~l~~~~~l~~l~-----~-~~~l~~L~~L~L~~~~l~~l-------~~-~l~~L~~L~L~~~~ 689 (782)
+|.+++|..-+.-. . -...|+|+.|.+.+|.++.= +. ..|.|++|+|++|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 66666653222111 0 12357788888887776621 11 46778888888774
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=1.1e-05 Score=85.96 Aligned_cols=196 Identities=13% Similarity=0.104 Sum_probs=102.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccc-eEEEEEcccccch-hHHHH---HHH
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCY-TTLWINKAEKYSS-NLLEE---AIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~---~i~ 76 (782)
|++|-+ +.++.+.+++..+..+.+.++|++|+||||+|+.+.+.-.. ..+. ..+.+++++-.+. ...+. ...
T Consensus 16 ~~~g~~-~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 16 DILGQD-EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG--DPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HhcCCH-HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC--cccccceEEechhhhhhcchhhhhcCcchh
Confidence 456655 78888888887777677889999999999999999886221 1111 1234443321100 00000 000
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
+..... ...........+......... ....+.+-+||+||+..- .... ...+..+.... ..
T Consensus 93 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~vlilDe~~~l--~~~~--~~~L~~~le~~----~~ 154 (337)
T PRK12402 93 HFLGTD-------KRIRSSKIDNFKHVLKEYASY---RPLSADYKTILLDNAEAL--REDA--QQALRRIMEQY----SR 154 (337)
T ss_pred hhhhhh-------hhhccchHHHHHHHHHHHHhc---CCCCCCCcEEEEeCcccC--CHHH--HHHHHHHHHhc----cC
Confidence 000000 000000000011111111111 001244558999999754 2211 11222222211 13
Q ss_pred CcEEEEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHH
Q 039334 157 HLKIIMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 157 gs~IivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~ 218 (782)
..++|+||.... . ....+++.+++.++..+.+.+.+... ...++....+++.++|.+-.+..
T Consensus 155 ~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 155 TCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 477888876541 1 12577889999999988888843332 34567889999999998755443
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=9.4e-06 Score=90.59 Aligned_cols=193 Identities=11% Similarity=0.136 Sum_probs=105.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ +.++.|.+++..++.. .+.++|..|+||||+|+.+.+..... ...+ +..+......+.|...-.
T Consensus 17 EVIGQe-~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe-~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 17 SLVGQE-HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE-TGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHcCcH-HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc-cCCC-------CCCCcccHHHHHHhcCCC
Confidence 567766 7788888988877655 45789999999999999888763221 1000 011112222222211100
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+.. .....+++.+.+... ...-..++.-++|||+++..+.+.++.+-..+++ | ..+.++
T Consensus 88 ~---DviEIDAa---s~rgVDdIReLIe~a-~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----P---P~~v~F 152 (830)
T PRK07003 88 V---DYVEMDAA---SNRGVDEMAALLERA-VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----P---PPHVKF 152 (830)
T ss_pred c---eEEEeccc---ccccHHHHHHHHHHH-HhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----c---CCCeEE
Confidence 0 00000000 000001111111110 0000235556888999997633333332222322 2 245889
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcH-HHHHH
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSP-AAITM 218 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glP-lai~~ 218 (782)
|+||++...- ...+.+..++.++..+.+.+..+.+ ...++..+.|++.++|.. -|+..
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999887321 1678899999999999998854433 234577889999999865 34443
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.4e-06 Score=90.63 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=104.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhccccccc--ccceEEEEEcccccchhHHHHHHHHh
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASS--SCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
|+||=+ +.++.|.+++..++... +-++|..|+||||+|+.+.+.-..... ... + -+.++......+.|...
T Consensus 17 dVIGQe-~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~-~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 17 TLVGQE-HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----I-TAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHcCcH-HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----C-CCCCCcccHHHHHHHcC
Confidence 577777 77888999998887664 578999999999999999876332100 000 0 00111111112221110
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCc
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHL 158 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs 158 (782)
-.. +.-+.+........+..++.+.+... -..++.-++|||+++..+.. .++.++..+-.. ..+.
T Consensus 91 ~hp---DviEIdAas~~gVDdIReLie~~~~~----P~~gr~KViIIDEah~Ls~~-------AaNALLKTLEEP-P~~v 155 (700)
T PRK12323 91 RFV---DYIEMDAASNRGVDEMAQLLDKAVYA----PTAGRFKVYMIDEVHMLTNH-------AFNAMLKTLEEP-PEHV 155 (700)
T ss_pred CCC---cceEecccccCCHHHHHHHHHHHHhc----hhcCCceEEEEEChHhcCHH-------HHHHHHHhhccC-CCCc
Confidence 000 00000000000000001111111100 02466679999999976322 233333222211 2446
Q ss_pred EEEEEeecc-ccCC------CeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHHH
Q 039334 159 KIIMTRRTT-KQSG------KVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 159 ~IivTTr~~-~~~~------~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
++|++|.+. ++-. ..+.+..++.++..+.+++....+ ...++..+.|++.++|.|.....+
T Consensus 156 ~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 156 KFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 777777665 3221 788999999999999888743332 233456788999999999655443
No 61
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=7.4e-06 Score=89.76 Aligned_cols=194 Identities=16% Similarity=0.107 Sum_probs=101.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccce-EEEEEcccccchhHHHHHHHHhh
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYT-TLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
|+||-+ ..+..+...+..++.+ -+-++|+.|+||||+|+.+++.-.... .... .-+ .++....-...+....
T Consensus 22 dliGq~-~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~----~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 22 ELQGQE-VLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTI----KTCEQCTNCISFNNHN 95 (507)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCc----CCCCCChHHHHHhcCC
Confidence 577777 7777777777776644 677899999999999999988732211 0000 000 0001111111111100
Q ss_pred ccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcE
Q 039334 80 LCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLK 159 (782)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~ 159 (782)
.. +.-+.+........+..++.+..... ...+++-++|+|+++.-+.+ .+..++..+... ....+
T Consensus 96 h~---Dv~eidaas~~~vd~Ir~iie~a~~~----P~~~~~KVvIIDEa~~Ls~~-------a~naLLk~LEep-p~~~v 160 (507)
T PRK06645 96 HP---DIIEIDAASKTSVDDIRRIIESAEYK----PLQGKHKIFIIDEVHMLSKG-------AFNALLKTLEEP-PPHII 160 (507)
T ss_pred CC---cEEEeeccCCCCHHHHHHHHHHHHhc----cccCCcEEEEEEChhhcCHH-------HHHHHHHHHhhc-CCCEE
Confidence 00 00000000000000111111111111 03567779999999975222 233333333322 24467
Q ss_pred EEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHH
Q 039334 160 IIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 160 IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai 216 (782)
+|++|... ++. ...+++.+++.++..+.+++.+..+ ...++....|++.++|.+-.+
T Consensus 161 fI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 161 FIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 66655443 221 1578899999999999999844332 234567788999999987544
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.35 E-value=1.2e-05 Score=84.42 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=101.8
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccc-eEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCY-TTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|=. +.++.|.+++..++.+.+-++|++|+||||+|+.+++.-.. ..|. .++-+..++.... +..+++++.+.
T Consensus 14 ~~~g~~-~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~eln~sd~~~~-~~vr~~i~~~~ 89 (319)
T PLN03025 14 DIVGNE-DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG--PNYKEAVLELNASDDRGI-DVVRNKIKMFA 89 (319)
T ss_pred HhcCcH-HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc--ccCccceeeecccccccH-HHHHHHHHHHH
Confidence 456655 66778888877777777889999999999999999887211 1122 1222222222222 12233332221
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
... . .. -.++.-+++||+++.. .... ...+..+... | +..+++
T Consensus 90 ~~~-----------------------~-~~-----~~~~~kviiiDE~d~l--t~~a--q~aL~~~lE~-~---~~~t~~ 132 (319)
T PLN03025 90 QKK-----------------------V-TL-----PPGRHKIVILDEADSM--TSGA--QQALRRTMEI-Y---SNTTRF 132 (319)
T ss_pred hcc-----------------------c-cC-----CCCCeEEEEEechhhc--CHHH--HHHHHHHHhc-c---cCCceE
Confidence 100 0 00 1245678999999975 2211 1222222221 1 234778
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
|+++...... ...+++++++.++..+.+.+.+.. -.-.++....|++.++|..-.+
T Consensus 133 il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred EEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 8877654211 167899999999999888883322 2334577889999999976443
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=87.63 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=104.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc------------------cccceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS------------------SSCYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 62 (782)
|+||-+ ..++.+.+.+..++.+ .+-++|+.|+||||+|+.+++.-.+.. ..+.-++.++.
T Consensus 14 dliGQe-~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 14 DLVGQD-VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 677866 7777888888777766 688999999999999999987421110 01111233433
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+....+.+ .+.+++.... .. ..+++-++|+|++..-+.+ .
T Consensus 93 as~~~vdd-IR~Iie~~~~----------------------------~P----~~~~~KVvIIDEah~Ls~~-------A 132 (491)
T PRK14964 93 ASNTSVDD-IKVILENSCY----------------------------LP----ISSKFKVYIIDEVHMLSNS-------A 132 (491)
T ss_pred ccCCCHHH-HHHHHHHHHh----------------------------cc----ccCCceEEEEeChHhCCHH-------H
Confidence 32222222 2223322211 10 2456678999999865222 2
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeecc-cc------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTT-KQ------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~-~~------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glP 213 (782)
.+.++..+-.. +++.++|++|.+. ++ ....+++.+++.++..+.+.+.+.. ....++....|++.++|.+
T Consensus 133 ~NaLLK~LEeP-p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 133 FNALLKTLEEP-APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSM 211 (491)
T ss_pred HHHHHHHHhCC-CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 23333222221 2457788777554 22 1277889999999999988884333 2334567889999999987
Q ss_pred HHHH
Q 039334 214 AAIT 217 (782)
Q Consensus 214 lai~ 217 (782)
-.+.
T Consensus 212 R~al 215 (491)
T PRK14964 212 RNAL 215 (491)
T ss_pred HHHH
Confidence 5443
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=9.2e-08 Score=104.41 Aligned_cols=127 Identities=27% Similarity=0.280 Sum_probs=74.3
Q ss_pred CCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEE
Q 039334 485 GMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMV 562 (782)
Q Consensus 485 ~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 562 (782)
.+..++.+.++.+.+..+-. +..+++|..|++.+|.+. .+.. +..+++|++|+++++.. ..+ ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I-~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKI-TKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccc-ccc--cchhhccchhhh
Confidence 45666777778877777444 777888888888887643 3444 56666666666666652 221 233445556666
Q ss_pred EccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCC
Q 039334 563 DLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 563 ~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~ 615 (782)
++++|.+..+..+..++.|+.+++++|.....-+. +..+.+++.+.+.+|.+.
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 66666666666555556666666655543322111 344455555555555444
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.7e-06 Score=86.97 Aligned_cols=191 Identities=15% Similarity=0.100 Sum_probs=103.8
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ ..+..|..++..++.+ .+.++|+.|+||||+|+.+++.-... ..... .++....-...+.....
T Consensus 19 dvVGQe-~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~~-------~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 19 DVIHQD-LAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIGN-------EPCNECTSCLEITKGIS 89 (484)
T ss_pred HHhChH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccCc-------cccCCCcHHHHHHccCC
Confidence 577766 7788888988887765 47899999999999999998872221 10000 01111111222222111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
... -+.+........+..++.+.+... ...++.-++|+|++..-+. ..++.++..+-.. ......
T Consensus 90 ~dv---iEIdaas~~gVd~IReL~e~l~~~----p~~g~~KV~IIDEah~Ls~-------~A~NALLKtLEEP-p~~viF 154 (484)
T PRK14956 90 SDV---LEIDAASNRGIENIRELRDNVKFA----PMGGKYKVYIIDEVHMLTD-------QSFNALLKTLEEP-PAHIVF 154 (484)
T ss_pred ccc---eeechhhcccHHHHHHHHHHHHhh----hhcCCCEEEEEechhhcCH-------HHHHHHHHHhhcC-CCceEE
Confidence 100 000000000001111111222111 1245666899999997622 2344443323211 134666
Q ss_pred EEEeecc-ccCC------CeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 161 IMTRRTT-KQSG------KVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 161 ivTTr~~-~~~~------~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
|++|.+. ++.. ..|.+.+++.++..+.+.+.... -...++....|++.++|.+--+
T Consensus 155 ILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 155 ILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred EeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHH
Confidence 6566554 3321 56899999999988888874332 2335577899999999998543
No 66
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.33 E-value=8.6e-07 Score=88.06 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc--cchhHHHHHHHHhhccCCCchhhhhhhhhhhhcc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK--YSSNLLEEAISRQALCESPNIEEWEEQEEEEDED 99 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 99 (782)
....++|+|++|+|||||++.+|++... .+|+.++|+.+.+. +++.++++++...+-....+. ++.. ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~--~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~---~~~~--~~~~ 87 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK--NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE---PPER--HVQV 87 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc--ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC---CHHH--HHHH
Confidence 3458999999999999999999998333 37999999997665 799999999944433311110 0000 0000
Q ss_pred cchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 100 GKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
....... .++ +.-.+++.++++|++..
T Consensus 88 ~~~~~~~-a~~---~~~~G~~vll~iDei~r 114 (249)
T cd01128 88 AEMVLEK-AKR---LVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHH-HHH---HHHCCCCEEEEEECHHH
Confidence 1111111 111 11358999999999874
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.32 E-value=1.6e-05 Score=79.19 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=97.6
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhh
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
.....+.++....+.+.+.|+|+.|+|||+|++++++... .....+.++++...... ..++
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~~---~~~~------------- 91 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAWF---VPEV------------- 91 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhhh---hHHH-------------
Confidence 3455555555444556899999999999999999998722 12234566665331100 0000
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc-chhHHHHhhhhhhhhcCCCCCCCC-cEEEEEeec
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM-DENELVKEASSDFKNLLPSVQPDH-LKIIMTRRT 166 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g-s~IivTTr~ 166 (782)
+ +. +. +--++++||+..... ..|+. .+-++.+..- ..| .++|+||+.
T Consensus 92 ------------------~-~~-----~~-~~dlliiDdi~~~~~~~~~~~---~lf~l~n~~~---e~g~~~li~ts~~ 140 (235)
T PRK08084 92 ------------------L-EG-----ME-QLSLVCIDNIECIAGDELWEM---AIFDLYNRIL---ESGRTRLLITGDR 140 (235)
T ss_pred ------------------H-HH-----hh-hCCEEEEeChhhhcCCHHHHH---HHHHHHHHHH---HcCCCeEEEeCCC
Confidence 0 11 11 124789999975311 12321 1212221111 133 479999997
Q ss_pred ccc--------------CCCeeecCCCCHHHHHHHHHh-hhcc-ccchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 167 TKQ--------------SGKVIKFPSMSTEESLNLLKN-EFSD-HQVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 167 ~~~--------------~~~~~~l~~L~~~~~~~Lf~~-~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
... ...++++++++.++-.+++++ +... -.-++++..-|++.+.|..-++..+-..+
T Consensus 141 ~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 141 PPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred ChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 621 126889999999999998887 4322 34466889999999998876654443333
No 68
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=1.9e-05 Score=78.66 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
...+.|+|..|+|||.|++++++. ... ....++++++.+ ....+.+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~-~~~--~~~~~~y~~~~~------~~~~~~~------------------------- 86 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA-AEQ--AGRSSAYLPLQA------AAGRLRD------------------------- 86 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHH--cCCcEEEEeHHH------hhhhHHH-------------------------
Confidence 346999999999999999999887 222 223456776432 1111111
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCcc-chhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecccc------------
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEM-DENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ------------ 169 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~-~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~------------ 169 (782)
.+..+ .+.-+|||||+....- ..|.. .+-++.+... ..|..||+||+....
T Consensus 87 ---~~~~l-------~~~dlLiIDDi~~l~~~~~~~~---~lf~l~n~~~---~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 87 ---ALEAL-------EGRSLVALDGLESIAGQREDEV---ALFDFHNRAR---AAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ---HHHHH-------hcCCEEEEeCcccccCChHHHH---HHHHHHHHHH---HcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 01111 2235899999885410 12221 1112221111 245679999997621
Q ss_pred --CCCeeecCCCCHHHHHHHHHh-hhc-cccchhHHHHHHHHhcCCcHHHH
Q 039334 170 --SGKVIKFPSMSTEESLNLLKN-EFS-DHQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 170 --~~~~~~l~~L~~~~~~~Lf~~-~~~-~~~~~~~~~~~i~~~c~glPlai 216 (782)
....+++++++.++-.+++++ +.. +-..++++...|++.+.|-.-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 125889999999999999998 443 33455678899999998876544
No 69
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.5e-06 Score=77.68 Aligned_cols=115 Identities=22% Similarity=0.180 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
.+++.|.|+.|+||||+++.++++.. ....++++++.+.........+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~---------------------------- 49 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD---------------------------- 49 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh----------------------------
Confidence 56899999999999999999998822 2345677776554432211000
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccccC---------C--
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQS---------G-- 171 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~~---------~-- 171 (782)
..+.+.+. ...++.+|+||++... .+|.. ..+.+.+ . ....+|++|+...... +
T Consensus 50 ~~~~~~~~-----~~~~~~~i~iDEiq~~--~~~~~---~lk~l~d----~-~~~~~ii~tgS~~~~l~~~~~~~l~gr~ 114 (128)
T PF13173_consen 50 LLEYFLEL-----IKPGKKYIFIDEIQYL--PDWED---ALKFLVD----N-GPNIKIILTGSSSSLLSKDIAESLAGRV 114 (128)
T ss_pred hHHHHHHh-----hccCCcEEEEehhhhh--ccHHH---HHHHHHH----h-ccCceEEEEccchHHHhhcccccCCCeE
Confidence 11111111 2346788999999976 44432 1222221 1 1347999999877221 1
Q ss_pred CeeecCCCCHHHH
Q 039334 172 KVIKFPSMSTEES 184 (782)
Q Consensus 172 ~~~~l~~L~~~~~ 184 (782)
..++|.||+..|.
T Consensus 115 ~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 115 IEIELYPLSFREF 127 (128)
T ss_pred EEEEECCCCHHHh
Confidence 5678999988774
No 70
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=9.3e-06 Score=92.95 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=91.9
Q ss_pred chhhhhhhhH---HHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 2 DSERVASSQK---EKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 2 ~~~~~~~~~~---~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
|+||=+ +.+ ..+.+.+..++.+.+.++|++|+||||||+.+++. ....|. .+..+. ....+ .++++..
T Consensus 29 d~vGQe-~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~---~~~~f~---~lna~~-~~i~d-ir~~i~~ 99 (725)
T PRK13341 29 EFVGQD-HILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH---TRAHFS---SLNAVL-AGVKD-LRAEVDR 99 (725)
T ss_pred HhcCcH-HHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH---hcCcce---eehhhh-hhhHH-HHHHHHH
Confidence 355544 333 35666677777778889999999999999999987 222331 111110 01111 1111111
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCc
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHL 158 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs 158 (782)
. ...+. ..+++.++||||++.-+. .....++..+ ..|+
T Consensus 100 a------------------------~~~l~-------~~~~~~IL~IDEIh~Ln~-------~qQdaLL~~l----E~g~ 137 (725)
T PRK13341 100 A------------------------KERLE-------RHGKRTILFIDEVHRFNK-------AQQDALLPWV----ENGT 137 (725)
T ss_pred H------------------------HHHhh-------hcCCceEEEEeChhhCCH-------HHHHHHHHHh----cCce
Confidence 1 00000 135678999999986421 1223333212 1345
Q ss_pred EEEEE--eeccc--c------CCCeeecCCCCHHHHHHHHHhhhc-------c--ccchhHHHHHHHHhcCCcHH
Q 039334 159 KIIMT--RRTTK--Q------SGKVIKFPSMSTEESLNLLKNEFS-------D--HQVSGELFEFIAEKGRRSPA 214 (782)
Q Consensus 159 ~IivT--Tr~~~--~------~~~~~~l~~L~~~~~~~Lf~~~~~-------~--~~~~~~~~~~i~~~c~glPl 214 (782)
.++++ |.+.. + ....+.+++|+.++...++++++. . -...++....|++.+.|.--
T Consensus 138 IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 138 ITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred EEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 55553 33331 1 126789999999999999998543 1 12245677889999988743
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.4e-05 Score=86.32 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=102.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc------------------cccceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS------------------SSCYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 62 (782)
|+||-+ ..++.+..++..++.+ .+-++|+.|+||||+|+.+++.-.... ..|-..+++..
T Consensus 17 diiGq~-~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 17 EVAGQQ-HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 567777 7778888888776654 477899999999999999987522110 01111222322
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
.....+.+ .+++++.+ .... ..+++-++|+|++...+. ..
T Consensus 96 as~~gvd~-ir~ii~~~----------------------------~~~p----~~g~~kViIIDEa~~ls~-------~a 135 (546)
T PRK14957 96 ASRTGVEE-TKEILDNI----------------------------QYMP----SQGRYKVYLIDEVHMLSK-------QS 135 (546)
T ss_pred ccccCHHH-HHHHHHHH----------------------------Hhhh----hcCCcEEEEEechhhccH-------HH
Confidence 11111111 12222221 1110 245667999999986522 22
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glP 213 (782)
++.++..+-.. +...++|++|.+. .+- ...+++.+++.++..+.+.+.+..+ ...++....|++.++|.+
T Consensus 136 ~naLLK~LEep-p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 136 FNALLKTLEEP-PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred HHHHHHHHhcC-CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 33333322221 2446677666544 221 2788999999999888888743322 334566788999999966
Q ss_pred H-HHHHHH
Q 039334 214 A-AITMIA 220 (782)
Q Consensus 214 l-ai~~~~ 220 (782)
- |+..+-
T Consensus 215 R~alnlLe 222 (546)
T PRK14957 215 RDALSLLD 222 (546)
T ss_pred HHHHHHHH
Confidence 4 444443
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.8e-05 Score=88.29 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=102.0
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc------------------cccceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS------------------SSCYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 62 (782)
|+||-+ ..+..|.+++..++.+ .+.++|+.|+||||+|+.+.+.-.... +.|-.++.+..
T Consensus 17 dIIGQe-~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 17 DLVGQE-HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 577877 7788899998887755 578999999999999999887622210 00001122221
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+....+ +.++++++.... . -..+++-++|||++... .. ..
T Consensus 96 As~~gV-d~IRelle~a~~----------------------------~----P~~gk~KVIIIDEad~L--s~-----~A 135 (709)
T PRK08691 96 ASNTGI-DNIREVLENAQY----------------------------A----PTAGKYKVYIIDEVHML--SK-----SA 135 (709)
T ss_pred cccCCH-HHHHHHHHHHHh----------------------------h----hhhCCcEEEEEECcccc--CH-----HH
Confidence 111111 112222221111 0 01356678999999865 21 12
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeeccc-cC----C--CeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTTK-QS----G--KVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~~-~~----~--~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glP 213 (782)
...++..+-.. ....++|++|.+.. +- . ..+.+.+++.++..+.+.+.+..+ ...++....|++.++|.+
T Consensus 136 ~NALLKtLEEP-p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 136 FNAMLKTLEEP-PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSM 214 (709)
T ss_pred HHHHHHHHHhC-CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCH
Confidence 22333222111 23477888876652 21 1 456778999999988888744332 334567889999999998
Q ss_pred HHHHH
Q 039334 214 AAITM 218 (782)
Q Consensus 214 lai~~ 218 (782)
.-+..
T Consensus 215 RdAln 219 (709)
T PRK08691 215 RDALS 219 (709)
T ss_pred HHHHH
Confidence 54443
No 73
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=3.3e-05 Score=73.64 Aligned_cols=168 Identities=21% Similarity=0.189 Sum_probs=83.2
Q ss_pred chhhhhhhhHHHHHHHhh-----cCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLK-----EDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~-----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 76 (782)
|.||=+ +-++.+.-++. .+....+-+||++|+||||||..+++. -+..|. +.+.+ ......-+..++
T Consensus 25 efiGQ~-~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e---~~~~~~---~~sg~-~i~k~~dl~~il 96 (233)
T PF05496_consen 25 EFIGQE-HLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE---LGVNFK---ITSGP-AIEKAGDLAAIL 96 (233)
T ss_dssp CS-S-H-HHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH---CT--EE---EEECC-C--SCHHHHHHH
T ss_pred HccCcH-HHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc---cCCCeE---eccch-hhhhHHHHHHHH
Confidence 445555 44444433332 234567889999999999999999998 223342 33221 111111111222
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhh--cCCCCC
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKN--LLPSVQ 154 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~--~~p~~~ 154 (782)
.++ +++-+|.+|.+..-+...-+..-...++..- ..-.+.
T Consensus 97 ~~l--------------------------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 97 TNL--------------------------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp HT----------------------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred Hhc--------------------------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccc
Confidence 211 2344677788775533333332222332210 001000
Q ss_pred ---------CCCcEEEEEeeccccCC-------CeeecCCCCHHHHHHHHHh-h-hccccchhHHHHHHHHhcCCcHHH
Q 039334 155 ---------PDHLKIIMTRRTTKQSG-------KVIKFPSMSTEESLNLLKN-E-FSDHQVSGELFEFIAEKGRRSPAA 215 (782)
Q Consensus 155 ---------~~gs~IivTTr~~~~~~-------~~~~l~~L~~~~~~~Lf~~-~-~~~~~~~~~~~~~i~~~c~glPla 215 (782)
++=+-|=.|||...... ...+++.-+.+|-.++.++ + .-+-+-.++.+.+|++++.|-|--
T Consensus 139 ~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp S-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHH
T ss_pred ccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHH
Confidence 01145667888764432 4557999999999999998 3 223344567899999999999954
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.3e-05 Score=86.57 Aligned_cols=175 Identities=11% Similarity=0.091 Sum_probs=102.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhccccccc------------------ccceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASS------------------SCYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 62 (782)
|+||=+ ..++.+.+++..++.+. +-++|+.|+||||+|+.+.+.-..... .|--++.+..
T Consensus 17 divGq~-~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 17 EVIGQA-PVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HhcCCH-HHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 577777 77889999998877664 678999999999999999886322110 0111222222
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+....+.+ .+++++.+.. . ...++.-++|+|+|+..+.+ .
T Consensus 96 as~~~v~~-iR~l~~~~~~----------------------------~----p~~~~~kV~iIDE~~~ls~~-------a 135 (509)
T PRK14958 96 ASRTKVED-TRELLDNIPY----------------------------A----PTKGRFKVYLIDEVHMLSGH-------S 135 (509)
T ss_pred cccCCHHH-HHHHHHHHhh----------------------------c----cccCCcEEEEEEChHhcCHH-------H
Confidence 21111111 1222222211 0 02466678999999976222 2
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glP 213 (782)
.+.++..+-.. +.+.++|++|.+. ++. ...+++.+++.++..+.+...+.. ....++....|++.++|.+
T Consensus 136 ~naLLk~LEep-p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~Gsl 214 (509)
T PRK14958 136 FNALLKTLEEP-PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSV 214 (509)
T ss_pred HHHHHHHHhcc-CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 23333222221 2457777777554 221 166789999998877776663322 2234456788999999988
Q ss_pred HHHHH
Q 039334 214 AAITM 218 (782)
Q Consensus 214 lai~~ 218 (782)
-.+..
T Consensus 215 R~al~ 219 (509)
T PRK14958 215 RDALS 219 (509)
T ss_pred HHHHH
Confidence 55443
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=2.2e-07 Score=92.26 Aligned_cols=242 Identities=20% Similarity=0.132 Sum_probs=135.3
Q ss_pred ccccCCCCCcEEEeecCCCCCCCch---HHhcCCCCccEEEccCCCC----CCCCC--------CCCCCCCcEEEccCCC
Q 039334 456 TGIKELKTLSVLEISGASSLKSNPD---ELFDGMAQLQSLNLSRCPM----KSLPS--------LPKLTKLRFLILRQCS 520 (782)
Q Consensus 456 ~~l~~l~~L~~L~L~~~~~~~~lp~---~~~~~l~~L~~L~l~~~~l----~~lp~--------l~~l~~L~~L~l~~~~ 520 (782)
+.+..+..+.+|++++|..-..-.. ..+.+.++|+.-++++-.. ..+|. +-.+++|+.|++++|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3456677888888888753221111 1224566777777776421 12332 3456688888888876
Q ss_pred CCCCCC-C----ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCC
Q 039334 521 CLEYMP-S----LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHIL 595 (782)
Q Consensus 521 ~~~~~~-~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~ 595 (782)
+...-+ . +.++..|++|.+.+|.. .......++. .|..+. .+ ....+.+.|+.+....|..-...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~--al~~l~--~~-----kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGR--ALFELA--VN-----KKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHH--HHHHHH--HH-----hccCCCcceEEEEeecccccccc
Confidence 543322 1 36677777777777663 2111111100 011000 00 01222344555555443322111
Q ss_pred -----CCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC-----cCCCCCCCCEEEe
Q 039334 596 -----PSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP-----LTTALKNLELLDL 665 (782)
Q Consensus 596 -----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~-----~~~~l~~L~~L~L 665 (782)
..+...+.|+.+.++.|.+..-+..... .. -..+++|+.|+|++|.....-. .+..+++|+.|++
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~-ea----l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA-EA----LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHH-HH----HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 1245567888888888877644331100 00 0113489999999985433211 1456779999999
Q ss_pred ecCCCcc---------ccccccccceeeccccccCCC----CC-CCCCCCcccEEecccCC
Q 039334 666 SNTNLKK---------LPSELCNLRKLLLNNCLSLTK----LP-EMKGLEKLEELRLSGCI 712 (782)
Q Consensus 666 ~~~~l~~---------l~~~l~~L~~L~L~~~~~l~~----l~-~~~~l~~L~~L~l~~c~ 712 (782)
+.|.+.. +....|+|+.|.+.+|..-.. +. .....|.|+.|+|++|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 9998873 223789999999999853222 11 34558999999999994
No 76
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.24 E-value=5.3e-05 Score=80.04 Aligned_cols=173 Identities=10% Similarity=0.120 Sum_probs=101.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc--ccccchhHHHHHHHHhh
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK--AEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~~ 79 (782)
|++|-+ +.++.+.+++..+..+.+.++|+.|+||||+|+.+++.... ..+.. .++.+ +...... ...+.+.++
T Consensus 18 ~~~g~~-~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~~-~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 18 EIVGQE-EIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWRE-NFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HhcCcH-HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Ccccc-ceEEeccccccchH-HHHHHHHHH
Confidence 456666 78888999988777777899999999999999999887221 11211 22332 2221111 122222221
Q ss_pred ccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcE
Q 039334 80 LCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLK 159 (782)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~ 159 (782)
.... .. -...+-++++|+++.- ... ....+...+... ...++
T Consensus 93 ~~~~-------------------------~~-----~~~~~~vviiDe~~~l--~~~-----~~~~L~~~le~~-~~~~~ 134 (319)
T PRK00440 93 ARTA-------------------------PV-----GGAPFKIIFLDEADNL--TSD-----AQQALRRTMEMY-SQNTR 134 (319)
T ss_pred HhcC-------------------------CC-----CCCCceEEEEeCcccC--CHH-----HHHHHHHHHhcC-CCCCe
Confidence 1100 00 1134568999998754 211 112222222221 13467
Q ss_pred EEEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHH
Q 039334 160 IIMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 160 IivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~ 217 (782)
+|+++.... . ....+++++++.++....+...+.. -.-.++....+++.++|.+--+.
T Consensus 135 lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 135 FILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred EEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 887775442 1 1257899999999988888873332 23356788899999999876543
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=4.9e-07 Score=68.85 Aligned_cols=58 Identities=29% Similarity=0.544 Sum_probs=35.7
Q ss_pred CCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCC
Q 039334 462 KTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCS 520 (782)
Q Consensus 462 ~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~ 520 (782)
++|++|++++| .+..+|...|..+++|++|++++|.++.+|. +..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35566666665 3566665555666666666666666666554 5666666666666654
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.23 E-value=4.2e-06 Score=75.40 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhccccccc--ccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASS--SCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDG 100 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (782)
.+.+.|+|.+|+|||++++.+.+....... .-..++|+.++...+...+...|+.+++.+... ....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----------~~~~ 72 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----------RQTS 72 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----------TS-H
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----------cCCH
Confidence 468899999999999999999998211000 024568999988889999999999999885421 1222
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeec
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRT 166 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~ 166 (782)
..+...+.+.+ .+.+..+||+|+++.- . ....++.+....- ..+-+||+..+.
T Consensus 73 ~~l~~~~~~~l----~~~~~~~lviDe~~~l--~----~~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 DELRSLLIDAL----DRRRVVLLVIDEADHL--F----SDEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHH----HHCTEEEEEEETTHHH--H----THHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHHHHHHHH----HhcCCeEEEEeChHhc--C----CHHHHHHHHHHHh---CCCCeEEEEECh
Confidence 33334444441 1334479999998853 1 1333444443223 355677776654
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=1.8e-06 Score=89.21 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=61.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc--chhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY--SSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
....|+|++|+||||||+.+|++... .+|+.++||.+.+.. ++.+++++|.-.+-... .+..... .....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~--nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-----~d~~~~~-~~~~a 241 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITT--NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-----FDEPAER-HVQVA 241 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh--hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-----CCCCHHH-HHHHH
Confidence 36789999999999999999998333 379999999998887 78888888863222211 1111100 11111
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
...-...+++ ...|++.+|++|++..
T Consensus 242 ~~~ie~Ae~~---~e~G~dVlL~iDsItR 267 (416)
T PRK09376 242 EMVIEKAKRL---VEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHH---HHcCCCEEEEEEChHH
Confidence 1222222221 1368999999999874
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.9e-05 Score=81.79 Aligned_cols=170 Identities=8% Similarity=0.024 Sum_probs=98.2
Q ss_pred chhhhhhhhHHHHHHHhhcCC---------c-eEEEEEcCCCchhHHHHHHHhhcccccc------------------cc
Q 039334 2 DSERVASSQKEKISELLKEDG---------R-STIILIGDPGLWKTWLEREISKNKVIAS------------------SS 53 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~---------~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~------------------~~ 53 (782)
||+|-+ ..++.+.+++..+. . .-+-++|+.|+|||++|+.+.+.-.... .|
T Consensus 6 ~IiGq~-~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 6 DLVGQE-AVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hccChH-HHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 577766 77888888886653 3 3477999999999999999877522211 11
Q ss_pred cceEEEEEcc-cccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc
Q 039334 54 CYTTLWINKA-EKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE 132 (782)
Q Consensus 54 f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~ 132 (782)
.|. .++... ....+.+ .+++.+.+.. . ...+++-++++|+++..+
T Consensus 85 pD~-~~i~~~~~~i~i~~-iR~l~~~~~~----------------------------~----p~~~~~kViiIDead~m~ 130 (394)
T PRK07940 85 PDV-RVVAPEGLSIGVDE-VRELVTIAAR----------------------------R----PSTGRWRIVVIEDADRLT 130 (394)
T ss_pred CCE-EEeccccccCCHHH-HHHHHHHHHh----------------------------C----cccCCcEEEEEechhhcC
Confidence 111 122111 0111111 1222222211 0 024556688889999652
Q ss_pred cchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc-cC------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHH
Q 039334 133 MDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-QS------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFI 205 (782)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i 205 (782)
... .+.++..+-.. +++..+|++|.+.. +. ...+.+++++.++..+.+.+..+ .+++.+..+
T Consensus 131 ~~a-------anaLLk~LEep-~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~~~~~a~~l 199 (394)
T PRK07940 131 ERA-------ANALLKAVEEP-PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---VDPETARRA 199 (394)
T ss_pred HHH-------HHHHHHHhhcC-CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---CCHHHHHHH
Confidence 222 22222222211 24577777777762 21 26888999999999888875332 234567889
Q ss_pred HHhcCCcHHHHH
Q 039334 206 AEKGRRSPAAIT 217 (782)
Q Consensus 206 ~~~c~glPlai~ 217 (782)
+..++|.|....
T Consensus 200 a~~s~G~~~~A~ 211 (394)
T PRK07940 200 ARASQGHIGRAR 211 (394)
T ss_pred HHHcCCCHHHHH
Confidence 999999997543
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.23 E-value=3.5e-05 Score=74.19 Aligned_cols=158 Identities=14% Similarity=0.184 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc-------------------cccceEEEEEcccccchhHH
Q 039334 12 EKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS-------------------SSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 12 ~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~ 71 (782)
+.+.+.+..+..+ .+-++|+.|+||||+|+.+.+.-...+ .+.|. .++.......-.+.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ 80 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH
Confidence 3566777677664 688999999999999999877622210 11111 22221111111122
Q ss_pred HHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCC
Q 039334 72 EEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLP 151 (782)
Q Consensus 72 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p 151 (782)
.+++++.+.. . ...+.+-++|+|+++.. . ....+.++..+.
T Consensus 81 i~~i~~~~~~----------------------------~----~~~~~~kviiide~~~l--~-----~~~~~~Ll~~le 121 (188)
T TIGR00678 81 VRELVEFLSR----------------------------T----PQESGRRVVIIEDAERM--N-----EAAANALLKTLE 121 (188)
T ss_pred HHHHHHHHcc----------------------------C----cccCCeEEEEEechhhh--C-----HHHHHHHHHHhc
Confidence 2233333222 1 02456678999998864 2 122333443333
Q ss_pred CCCCCCcEEEEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHH
Q 039334 152 SVQPDHLKIIMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPA 214 (782)
Q Consensus 152 ~~~~~gs~IivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPl 214 (782)
.. +..+.+|++|++.. . ....+.+.+++.++..+.+.+. | ..++.+..|++.++|.|.
T Consensus 122 ~~-~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 122 EP-PPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---ISEEAAELLLALAGGSPG 186 (188)
T ss_pred CC-CCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---CCHHHHHHHHHHcCCCcc
Confidence 32 24577777776551 1 1268899999999988888764 2 345678899999999885
No 82
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.3e-05 Score=81.17 Aligned_cols=205 Identities=11% Similarity=0.116 Sum_probs=107.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhccccccc-ccceEEEEEcccccchhHHHHHHHHhh
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASS-SCYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
+++|-+ +..+.+...+..++.+ -+-|.|+.|+||||+|+.+.+.-..... .+... ....++......+.+...-
T Consensus 24 ~l~Gh~-~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 24 RLFGHE-EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hccCcH-HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 356766 7778888888877755 4889999999999999998887333110 01110 1111222222333333321
Q ss_pred ccCCCchh-hhhhh--hhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 80 LCESPNIE-EWEEQ--EEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 80 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
.....-.. .+++. ........+++ ..+.+.+......+++-++|+|+++..+... .+.++..+-.. +.
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~a-------anaLLk~LEEp-p~ 170 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNA-------ANAILKTLEEP-PA 170 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHH-------HHHHHHHHhcC-CC
Confidence 11000000 00000 00001111221 1222222211225677799999999762222 22222222221 13
Q ss_pred CcEEEEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHH
Q 039334 157 HLKIIMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 157 gs~IivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
+..+|++|.... . ....+++.+++.++..+.+.+.....+..++....++..++|.|.....+
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 355566665442 1 12788999999999999998732222233556788999999999865433
No 83
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.21 E-value=1.6e-05 Score=85.17 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=93.7
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
|+.|.+ ++++++.+.+.- ...+-+.++|++|+|||++|+++++. ....| +.+..
T Consensus 123 di~Gl~-~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~---l~~~~-----~~v~~---- 189 (364)
T TIGR01242 123 DIGGLE-EQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATF-----IRVVG---- 189 (364)
T ss_pred HhCChH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---CCCCE-----Eecch----
Confidence 567777 888888877621 11335889999999999999999997 22233 22110
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc--------chhHHHH
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM--------DENELVK 140 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~--------~~~~~~~ 140 (782)
.+ +......+. . ......+... ....+.+|+||+++.... .+.+ ..
T Consensus 190 ~~----l~~~~~g~~-------------~---~~i~~~f~~a-----~~~~p~il~iDEiD~l~~~~~~~~~~~~~~-~~ 243 (364)
T TIGR01242 190 SE----LVRKYIGEG-------------A---RLVREIFELA-----KEKAPSIIFIDEIDAIAAKRTDSGTSGDRE-VQ 243 (364)
T ss_pred HH----HHHHhhhHH-------------H---HHHHHHHHHH-----HhcCCcEEEhhhhhhhccccccCCCCccHH-HH
Confidence 11 111110000 0 0011111111 134568999999875200 0111 11
Q ss_pred hhhhhhhhcCCCC-CCCCcEEEEEeecccc-----C-----CCeeecCCCCHHHHHHHHHh-hhccccchhHHHHHHHHh
Q 039334 141 EASSDFKNLLPSV-QPDHLKIIMTRRTTKQ-----S-----GKVIKFPSMSTEESLNLLKN-EFSDHQVSGELFEFIAEK 208 (782)
Q Consensus 141 ~~~~~~~~~~p~~-~~~gs~IivTTr~~~~-----~-----~~~~~l~~L~~~~~~~Lf~~-~~~~~~~~~~~~~~i~~~ 208 (782)
..+..+...+... ..++.+||.||+.... . ...+.++..+.++..++|+. +.+.......-...+++.
T Consensus 244 ~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~ 323 (364)
T TIGR01242 244 RTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKM 323 (364)
T ss_pred HHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHH
Confidence 2233333222211 1245789999986521 1 25788999999999999998 333221111125678888
Q ss_pred cCCcH
Q 039334 209 GRRSP 213 (782)
Q Consensus 209 c~glP 213 (782)
+.|..
T Consensus 324 t~g~s 328 (364)
T TIGR01242 324 TEGAS 328 (364)
T ss_pred cCCCC
Confidence 87764
No 84
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=5.7e-05 Score=74.20 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=90.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
..+.|+|..|+|||.|.+++++.... ..+-..+++++ ..++...+...+... ..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~------~~~f~~~~~~~~~~~-------------------~~ 88 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLS------AEEFIREFADALRDG-------------------EI 88 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEE------HHHHHHHHHHHHHTT-------------------SH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeec------HHHHHHHHHHHHHcc-------------------cc
Confidence 46889999999999999999998222 12222455664 344445555444331 01
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecccc--------------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ-------------- 169 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~-------------- 169 (782)
.. +++. ++ .-=+|++||++.. .........+-.+.+.+- ..|-+||+|++....
T Consensus 89 ~~-~~~~-----~~-~~DlL~iDDi~~l--~~~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 89 EE-FKDR-----LR-SADLLIIDDIQFL--AGKQRTQEELFHLFNRLI---ESGKQLILTSDRPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp HH-HHHH-----HC-TSSEEEEETGGGG--TTHHHHHHHHHHHHHHHH---HTTSEEEEEESS-TTTTTTS-HHHHHHHH
T ss_pred hh-hhhh-----hh-cCCEEEEecchhh--cCchHHHHHHHHHHHHHH---hhCCeEEEEeCCCCccccccChhhhhhHh
Confidence 11 1122 12 3368999999865 222211222222222222 246789999976521
Q ss_pred CCCeeecCCCCHHHHHHHHHh-hhcc-ccchhHHHHHHHHhcCCcHHHHHHHH
Q 039334 170 SGKVIKFPSMSTEESLNLLKN-EFSD-HQVSGELFEFIAEKGRRSPAAITMIA 220 (782)
Q Consensus 170 ~~~~~~l~~L~~~~~~~Lf~~-~~~~-~~~~~~~~~~i~~~c~glPlai~~~~ 220 (782)
.+-++++.+++.++-.+++++ +... -.-++++..-|++.+.+..-.+..+-
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp CSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 126889999999999999998 4322 34466788889999888776655433
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.3e-05 Score=86.62 Aligned_cols=194 Identities=11% Similarity=0.122 Sum_probs=105.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ ..++.|.+.+..++.+. +-++|+.|+||||+|+.+.+.-... ..+ -+.++......+.|...-.
T Consensus 17 divGQe-~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 17 EVVGQE-HVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCC-------CCCCCCCCHHHHHHHcCCC
Confidence 567766 77788888888777665 5789999999999999998873331 100 0112222233333322100
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+........+..++.+.+... ...+++-++|||+++..+.+..+..-..+++ | .++.++
T Consensus 88 ~---D~ieidaas~~~VddiR~li~~~~~~----p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----P---p~~v~F 152 (647)
T PRK07994 88 V---DLIEIDAASRTKVEDTRELLDNVQYA----PARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----P---PEHVKF 152 (647)
T ss_pred C---CceeecccccCCHHHHHHHHHHHHhh----hhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----C---CCCeEE
Confidence 0 00000000000000111111111111 0246777999999997632222221122222 2 234677
Q ss_pred EEEeeccc-cC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHH
Q 039334 161 IMTRRTTK-QS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 161 ivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
|++|.+.. +- ...+.+.+|+.++..+.+...+.. -...++....|++.++|.+-.+..+
T Consensus 153 IL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred EEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77776652 21 278899999999999888874322 2234456788999999988644433
No 86
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=7.5e-06 Score=75.38 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
+.++.+...+.....+++.|+|++|+|||++++.+++... ..-..++++..++..
T Consensus 5 ~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~ 59 (151)
T cd00009 5 EAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLL 59 (151)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhh
Confidence 6778888887776677899999999999999999999822 112345677665443
No 87
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3e-05 Score=84.75 Aligned_cols=180 Identities=20% Similarity=0.232 Sum_probs=101.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhccccccc------------------ccceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASS------------------SCYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 62 (782)
|+||-+ +....+.+.+..+..+ .+-++|++|+||||+|+.+++.-..... .+..++.+..
T Consensus 15 divGq~-~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 15 EVVGQD-HVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HccCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 577766 6677788877777664 5789999999999999999876222100 0001122222
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+......+ .++|.+.+.. . ...+++-++|+|+++.- . ...
T Consensus 94 a~~~gid~-iR~i~~~~~~----------------------------~----p~~~~~kVvIIDE~h~L--t-----~~a 133 (472)
T PRK14962 94 ASNRGIDE-IRKIRDAVGY----------------------------R----PMEGKYKVYIIDEVHML--T-----KEA 133 (472)
T ss_pred cccCCHHH-HHHHHHHHhh----------------------------C----hhcCCeEEEEEEChHHh--H-----HHH
Confidence 11111111 1122221111 0 02456679999998854 1 222
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeecc-cc------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCc-
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTT-KQ------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRS- 212 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~-~~------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~gl- 212 (782)
...++..+... .+...+|++|.++ .+ ....+++.+++.++....+++.+.. -.-.+++...|++.++|.
T Consensus 134 ~~~LLk~LE~p-~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 134 FNALLKTLEEP-PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HHHHHHHHHhC-CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 33333333321 1235555555443 22 1268889999999998888884322 234557788899988654
Q ss_pred HHHHHHHHHHH
Q 039334 213 PAAITMIAKAL 223 (782)
Q Consensus 213 Plai~~~~~~l 223 (782)
+.|+..+-.+.
T Consensus 213 R~aln~Le~l~ 223 (472)
T PRK14962 213 RDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 88
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2.6e-07 Score=100.88 Aligned_cols=214 Identities=25% Similarity=0.278 Sum_probs=136.4
Q ss_pred CCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC-cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEE
Q 039334 530 ELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK-FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILD 608 (782)
Q Consensus 530 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~ 608 (782)
.+..++.+.+..+.... ....+..+.+|..+++..|.+..+.. +..+++|+.|++++|. .+.+..+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhhe
Confidence 44455555555443211 12346777888888888888888887 7888888888888864 34555666777788888
Q ss_pred cccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc--cccccceee
Q 039334 609 LSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS--ELCNLRKLL 684 (782)
Q Consensus 609 l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~ 684 (782)
+.+|.+..+..... ...|+.+++++| .+..+.. ...+.+|+.+.+.+|.+..+.. .+..+..++
T Consensus 147 l~~N~i~~~~~~~~-----------l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 147 LSGNLISDISGLES-----------LKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLS 214 (414)
T ss_pred eccCcchhccCCcc-----------chhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhh
Confidence 88888776554321 126777777776 3444444 3667778888888887766554 344444445
Q ss_pred ccccccCCCCCCCCCCCc--ccEEecccCCCCCCCC-CCCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCC
Q 039334 685 LNNCLSLTKLPEMKGLEK--LEELRLSGCINLTELP-NLNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQ 761 (782)
Q Consensus 685 L~~~~~l~~l~~~~~l~~--L~~L~l~~c~~l~~l~-~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~ 761 (782)
+..+ .+..+..+..++. |+.+++.++ .+...+ .+..++.+..|++.+++++.+. .+..+..+..+....|.
T Consensus 215 l~~n-~i~~~~~l~~~~~~~L~~l~l~~n-~i~~~~~~~~~~~~l~~l~~~~n~~~~~~----~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 215 LLDN-KISKLEGLNELVMLHLRELYLSGN-RISRSPEGLENLKNLPVLDLSSNRISNLE----GLERLPKLSELWLNDNK 288 (414)
T ss_pred cccc-cceeccCcccchhHHHHHHhcccC-ccccccccccccccccccchhhccccccc----cccccchHHHhccCcch
Confidence 5554 3444434444444 788888887 555553 3667788888888888765432 23445555566666666
Q ss_pred CCC
Q 039334 762 AED 764 (782)
Q Consensus 762 ~~~ 764 (782)
+..
T Consensus 289 ~~~ 291 (414)
T KOG0531|consen 289 LAL 291 (414)
T ss_pred hcc
Confidence 653
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.1e-06 Score=66.93 Aligned_cols=59 Identities=36% Similarity=0.584 Sum_probs=39.5
Q ss_pred CcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCC
Q 039334 701 EKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQA 762 (782)
Q Consensus 701 ~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~ 762 (782)
|+|++|++++| .++.+|. |..+++|+.|++++|.++.+|... +..++.|+++++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~--f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA--FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTT--TTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHH--HcCCCCCCEEeCcCCcC
Confidence 46777777776 6666664 667777777777777777665542 45566666777777764
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=4e-08 Score=99.52 Aligned_cols=220 Identities=19% Similarity=0.240 Sum_probs=130.1
Q ss_pred cCCCcccEEEccCCCCCCccccc-ccCCCCCccEEEccCCCCC---CC-cCcCCCCcccEEEecCcCCCCC--CC-CCCC
Q 039334 529 KELHELEIIDLSGATSLSSFQQL-DFSSHTNLQMVDLSYTQIP---WL-PKFTDLKHLSRILLRGCRKLHI--LP-SFQK 600 (782)
Q Consensus 529 ~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~---~l-~~~~~l~~L~~L~l~~~~~~~~--~~-~l~~ 600 (782)
..+++|+++++..|..++..... ....+++|++++++|+..- ++ +....+..++.+...+|...+. +. .=+.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 33444444444444333332222 2235677777777776522 12 2344566677777777654321 11 1123
Q ss_pred CCCCCEEEcccC-CCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc---CCCCCCCCEEEeecCC------C
Q 039334 601 LHSLKILDLSEV-GFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL---TTALKNLELLDLSNTN------L 670 (782)
Q Consensus 601 l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~l~~L~~L~L~~~~------l 670 (782)
++.+..+++..+ .+++.... .+......|+.|..++|....+.+. ..+.++|+.|-++.++ +
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~--------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f 338 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLW--------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF 338 (483)
T ss_pred ChHhhccchhhhccccchHHH--------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence 344555555443 33332210 0111223789999999988776553 4567999999999874 2
Q ss_pred ccccccccccceeeccccccCCCC--C-CCCCCCcccEEecccCCCCCCCC-----C-CCCCCCcCEEeccCCCCC--CC
Q 039334 671 KKLPSELCNLRKLLLNNCLSLTKL--P-EMKGLEKLEELRLSGCINLTELP-----N-LNDFPKLDLLDISNTGIR--EI 739 (782)
Q Consensus 671 ~~l~~~l~~L~~L~L~~~~~l~~l--~-~~~~l~~L~~L~l~~c~~l~~l~-----~-~~~l~~L~~L~l~~~~l~--~l 739 (782)
+.+..+.+.|+.|++..|.....- . --.+++.|++|.+++|..+++.. . -..+..|+.+.+++|+.. ..
T Consensus 339 t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~ 418 (483)
T KOG4341|consen 339 TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT 418 (483)
T ss_pred hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH
Confidence 344457889999999988644432 2 24678999999999998777652 2 456889999999999843 33
Q ss_pred ChhhhCCCCCCcccEEe
Q 039334 740 PDEILELSRPKIIREVD 756 (782)
Q Consensus 740 p~~~~~l~~L~~L~~l~ 756 (782)
-.-+...++|+++...+
T Consensus 419 Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 419 LEHLSICRNLERIELID 435 (483)
T ss_pred HHHHhhCcccceeeeec
Confidence 33444555566554433
No 91
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=7.6e-06 Score=85.65 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEccc
Q 039334 554 SSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSE 611 (782)
Q Consensus 554 ~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 611 (782)
..+.++..|+++.|.+..+|. -.++|+.|.+.+|..++.+|..- .++|+.|++++
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~ 103 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCH 103 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh-hhhhhheEccC
Confidence 345677777777777776663 24457777777766655544311 13455555544
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.18 E-value=6.5e-05 Score=80.63 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=103.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc-------------------cccceEEEEE
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS-------------------SSCYTTLWIN 61 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~ 61 (782)
|+||-+ +.++.+.+++..+..+ .+-++|+.|+||||+|+.+.+.-.... .+++. +++.
T Consensus 15 ~iig~~-~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 15 DVIGQE-HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hccCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 678877 8899999999877655 577899999999999999877622110 01221 2222
Q ss_pred cccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHh
Q 039334 62 KAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKE 141 (782)
Q Consensus 62 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~ 141 (782)
.+.... .+-.++++..+.. . -..+++-++|+|+++.. .. .
T Consensus 93 ~~~~~~-~~~~~~l~~~~~~----------------------------~----p~~~~~~vviidea~~l--~~-----~ 132 (355)
T TIGR02397 93 AASNNG-VDDIREILDNVKY----------------------------A----PSSGKYKVYIIDEVHML--SK-----S 132 (355)
T ss_pred ccccCC-HHHHHHHHHHHhc----------------------------C----cccCCceEEEEeChhhc--CH-----H
Confidence 211111 1111222222211 1 02355568889998754 21 2
Q ss_pred hhhhhhhcCCCCCCCCcEEEEEeecccc-------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCc
Q 039334 142 ASSDFKNLLPSVQPDHLKIIMTRRTTKQ-------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRS 212 (782)
Q Consensus 142 ~~~~~~~~~p~~~~~gs~IivTTr~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~gl 212 (782)
..+.+...+... +....+|++|.+... ....++++++++++..+.+...+.. ....++....+++.++|.
T Consensus 133 ~~~~Ll~~le~~-~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~ 211 (355)
T TIGR02397 133 AFNALLKTLEEP-PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGS 211 (355)
T ss_pred HHHHHHHHHhCC-ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 233343333221 234777777755421 1267788999999988888873322 233457788999999999
Q ss_pred HHHHHHHH
Q 039334 213 PAAITMIA 220 (782)
Q Consensus 213 Plai~~~~ 220 (782)
|..+....
T Consensus 212 ~~~a~~~l 219 (355)
T TIGR02397 212 LRDALSLL 219 (355)
T ss_pred hHHHHHHH
Confidence 87654433
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.17 E-value=1.8e-05 Score=85.04 Aligned_cols=172 Identities=16% Similarity=0.208 Sum_probs=91.6
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
|+.|.+ ++++++.+.+.. ...+-|.++|++|+|||++|+++++. ....| +.+..+
T Consensus 132 di~Gl~-~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~---~~~~~---i~v~~~----- 199 (389)
T PRK03992 132 DIGGLE-EQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE---TNATF---IRVVGS----- 199 (389)
T ss_pred HhCCcH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH---hCCCE---EEeehH-----
Confidence 466777 788888876621 12345889999999999999999987 22222 122211
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc--------cchhHHHH
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE--------MDENELVK 140 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~ 140 (782)
+ +......+. ...+++.+... ....+.+|+|||++.-- ..+.+. .
T Consensus 200 -~----l~~~~~g~~--------------------~~~i~~~f~~a-~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~-~ 252 (389)
T PRK03992 200 -E----LVQKFIGEG--------------------ARLVRELFELA-REKAPSIIFIDEIDAIAAKRTDSGTSGDREV-Q 252 (389)
T ss_pred -H----HhHhhccch--------------------HHHHHHHHHHH-HhcCCeEEEEechhhhhcccccCCCCccHHH-H
Confidence 1 111111100 01111111000 13456899999988520 001111 1
Q ss_pred hhhhhhhhcCCCC-CCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccch-hHHHHHHHHh
Q 039334 141 EASSDFKNLLPSV-QPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVS-GELFEFIAEK 208 (782)
Q Consensus 141 ~~~~~~~~~~p~~-~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~-~~~~~~i~~~ 208 (782)
..+..+...+... ...+-+||.||...... ...+.++..+.++-.++|+......... ......+++.
T Consensus 253 ~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~ 332 (389)
T PRK03992 253 RTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAEL 332 (389)
T ss_pred HHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHH
Confidence 1222222211111 12346788888765211 2568899999999999998743332211 1225667777
Q ss_pred cCCc
Q 039334 209 GRRS 212 (782)
Q Consensus 209 c~gl 212 (782)
+.|.
T Consensus 333 t~g~ 336 (389)
T PRK03992 333 TEGA 336 (389)
T ss_pred cCCC
Confidence 7775
No 94
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.3e-07 Score=86.88 Aligned_cols=214 Identities=16% Similarity=0.200 Sum_probs=137.9
Q ss_pred EEEccCCCCCCC-ChhhHhcCCCCceEEEecCCCCCCCCcc-----CCCCccEEEEecCCCCCCCccc-cCCCCCcEEEe
Q 039334 397 TLLIDGSRPCEE-DHSTFFNLMPKLQVLAIFKPTFKSLMSS-----SFERLTVLVLRNCDMLEDITGI-KELKTLSVLEI 469 (782)
Q Consensus 397 ~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~l-~~l~~L~~L~L 469 (782)
-+.+.++.+... ....+-..++.++.+++.+|.++.|... ++|+|++|+|+.|.+...+..+ ..+.+|+.|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 344455544322 2334455688999999999999888664 8999999999999887766666 46789999999
Q ss_pred ecCCCCCCCchHHhcCCCCccEEEccCCCCCCCC--C--CCC-CCCCcEEEccCCCCCCCC--CCc-cCCCcccEEEccC
Q 039334 470 SGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLP--S--LPK-LTKLRFLILRQCSCLEYM--PSL-KELHELEIIDLSG 541 (782)
Q Consensus 470 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp--~--l~~-l~~L~~L~l~~~~~~~~~--~~~-~~l~~L~~L~l~~ 541 (782)
.+..---.-..++...++.++.|.++.|.+..+- . +.. -+.++.|+...|...... -.+ ...+++..+-+..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 8874222333444577888889988888544321 1 222 235666666666422111 111 4456666666666
Q ss_pred CCCCCcccccccCCCCCccEEEccCCCCCCCc---CcCCCCcccEEEecCcCCCCCCC-------CCCCCCCCCEEEcc
Q 039334 542 ATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP---KFTDLKHLSRILLRGCRKLHILP-------SFQKLHSLKILDLS 610 (782)
Q Consensus 542 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~~~~~~~-------~l~~l~~L~~L~l~ 610 (782)
|..-+.........++.+.-|+++.+++..+. .+..+++|..|.+..++....+. -++.+++++.|+=+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 65433334455666777778888888877554 46678888888888877654332 14567777776543
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.1e-05 Score=84.95 Aligned_cols=195 Identities=14% Similarity=0.131 Sum_probs=104.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccc-cceEEEEEcccccchhHHHHHHHHhh
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSS-CYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
|+||=+ .-+..|.+++..++.+ .+-++|+.|+||||+|+.+.+.-.+.... ... ++ ..++......+.|-..-
T Consensus 17 dviGQe-~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~---~~-~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 17 EMVGQE-HVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGG---IT-ATPCGVCQACRDIDSGR 91 (618)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccC---CC-CCCCCccHHHHHHHcCC
Confidence 577744 7788888888887765 45789999999999999996652221000 000 00 01222223333331100
Q ss_pred ccCCCchhhhhhhhhhhhcccchhhhhhhchhhhcc---ccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 80 LCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENK---EDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
+.+.-+.+.. .... .+.+++.+.... ..++.-++|||+|+..+.+ .++.++..+-.. ..
T Consensus 92 ---h~D~~eldaa---s~~~----Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------a~NaLLKtLEEP-P~ 153 (618)
T PRK14951 92 ---FVDYTELDAA---SNRG----VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------AFNAMLKTLEEP-PE 153 (618)
T ss_pred ---CCceeecCcc---cccC----HHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-------HHHHHHHhcccC-CC
Confidence 0000000000 0000 111111110000 1355568899999976222 233443333221 24
Q ss_pred CcEEEEEeecc-cc------CCCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHHH
Q 039334 157 HLKIIMTRRTT-KQ------SGKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 157 gs~IivTTr~~-~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
..++|++|.+. ++ ....+++++++.++..+.+.+.+..+ ...++....|++.++|.+-.+..+
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 46777777554 21 12788999999999988888744332 334567889999999987554433
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.15 E-value=6.8e-05 Score=74.69 Aligned_cols=161 Identities=15% Similarity=0.172 Sum_probs=93.2
Q ss_pred hhHHHHHHHhhc-CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchh
Q 039334 9 SQKEKISELLKE-DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIE 87 (782)
Q Consensus 9 ~~~~~l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (782)
+....+.++... ...+.+.|+|..|+|||+||+++++.... .. ...++++...... . +.
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~~------~----~~------- 86 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPLL------A----FD------- 86 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhHH------H----Hh-------
Confidence 344555555442 23457889999999999999999987211 11 2335555332110 0 00
Q ss_pred hhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCc-EEEEEeec
Q 039334 88 EWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHL-KIIMTRRT 166 (782)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs-~IivTTr~ 166 (782)
.....-+||+||+... ..+.. ..+-.+.+... ..+. .||+|++.
T Consensus 87 ----------------------------~~~~~~~liiDdi~~l--~~~~~--~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 87 ----------------------------FDPEAELYAVDDVERL--DDAQQ--IALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred ----------------------------hcccCCEEEEeChhhc--CchHH--HHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 0122347889999854 32221 11211111111 2334 46666664
Q ss_pred ccc----C---------CCeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcHHHHHHHHHHHh
Q 039334 167 TKQ----S---------GKVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSPAAITMIAKALK 224 (782)
Q Consensus 167 ~~~----~---------~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glPlai~~~~~~l~ 224 (782)
... . ...++++++++++-..++.+... .-.-++++...+++.+.|.+..+..+-..+.
T Consensus 132 ~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 132 APLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 321 1 25788999999877777766322 2334567888999999999998877766653
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.5e-05 Score=83.62 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=101.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|=+ ..++.+.+++..++.+ .+-++|+.|+||||+|+.+.+.-... . |.+. .++......+.+.....
T Consensus 17 dIIGQe-~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 17 QIIGQE-LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCC-CCCcccHHHHHHHcCCC
Confidence 466755 7788888888776655 57799999999999999998873221 1 2111 12222222222222111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+........+...+...+.... ..+++-++|+|+++..+.. .+..++..+-.. +.+..+
T Consensus 88 ~---DiieIdaas~igVd~IReIi~~~~~~P----~~~~~KVIIIDEad~Lt~~-------A~NaLLKtLEEP-p~~tvf 152 (605)
T PRK05896 88 V---DIVELDAASNNGVDEIRNIIDNINYLP----TTFKYKVYIIDEAHMLSTS-------AWNALLKTLEEP-PKHVVF 152 (605)
T ss_pred C---ceEEeccccccCHHHHHHHHHHHHhch----hhCCcEEEEEechHhCCHH-------HHHHHHHHHHhC-CCcEEE
Confidence 1 000000000000000111111111110 1234446999999865222 233333222221 234667
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai 216 (782)
|++|... .+. ...+++.+++.++....+.+.+... ...++.+..+++.++|.+-.+
T Consensus 153 IL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 153 IFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred EEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Confidence 6666544 221 2678999999999998888844332 244567889999999976433
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.8e-05 Score=82.18 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=104.8
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccccccceEEEEE-cccccchhHHHHHHHHhh
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWIN-KAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~~ 79 (782)
|++|=+ ..++.+.+++..++.+. +-++|+.|+||||+|+.+.+.-... .......|.. +..++......+.+....
T Consensus 17 eiiGq~-~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 17 DITAQE-HITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hccChH-HHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 466755 66778888888777664 7789999999999999998873331 1111111111 112222223333333211
Q ss_pred ccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcE
Q 039334 80 LCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLK 159 (782)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~ 159 (782)
... ....+........+..++.+.+.... ..+++-++|+|++...+.+ .++.+...+... .+.+.
T Consensus 95 ~~n---~~~~~~~~~~~id~Ir~l~~~~~~~p----~~~~~kvvIIdea~~l~~~-------~~~~LLk~LEep-~~~t~ 159 (397)
T PRK14955 95 SLN---ISEFDAASNNSVDDIRLLRENVRYGP----QKGRYRVYIIDEVHMLSIA-------AFNAFLKTLEEP-PPHAI 159 (397)
T ss_pred CCC---eEeecccccCCHHHHHHHHHHHhhch----hcCCeEEEEEeChhhCCHH-------HHHHHHHHHhcC-CCCeE
Confidence 110 00000000000001111111111110 2355668899998865222 233333323221 23467
Q ss_pred EEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHH
Q 039334 160 IIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 160 IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
+|++|... ++. ...+++.+++.++..+.+...+.. ....++.+..|++.++|.+--+..
T Consensus 160 ~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 160 FIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred EEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 77666443 222 167889999999988888874432 234567889999999998754433
No 99
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00013 Score=77.21 Aligned_cols=204 Identities=9% Similarity=0.046 Sum_probs=103.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhccccccc-ccceE-EEEEcccccchhHHHHHHHHh
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASS-SCYTT-LWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~-~f~~~-~wv~~~~~~~~~~~~~~i~~~ 78 (782)
|++|=+ +.+..+.+.+..++.+ .+-+.|+.|+||+|+|..+.+.-..... ..+.. .-...-..+......+.|...
T Consensus 20 ~iiGq~-~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 20 ALFGHA-AAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred hccChH-HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 567755 7788888888888766 4889999999999999988776333210 00000 000000000011122222111
Q ss_pred hccCCCchhhhhhh--hhhhhcccchhhhhhhchhhhcc---ccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCC
Q 039334 79 ALCESPNIEEWEEQ--EEEEDEDGKKTEGEMATHQEENK---EDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSV 153 (782)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~ 153 (782)
-. ++.-.-.+. +........-.++.+++....+. -.+++-++|+||++..+... ...++..+-..
T Consensus 99 ~H---PDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~a-------anaLLK~LEep 168 (365)
T PRK07471 99 AH---GGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANA-------ANALLKVLEEP 168 (365)
T ss_pred CC---CCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHH-------HHHHHHHHhcC
Confidence 10 010000000 00000000001111222211111 14666789999998652222 22222222211
Q ss_pred CCCCcEEEEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHH
Q 039334 154 QPDHLKIIMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 154 ~~~gs~IivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
..+..+|++|...... ...+.+.+++.++..+++.+..+... ++....++..++|.|..+..+
T Consensus 169 -p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 169 -PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 2457788888776321 26889999999999999987433221 222367899999999865433
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=6.5e-05 Score=87.26 Aligned_cols=194 Identities=12% Similarity=0.093 Sum_probs=101.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
||||=+ ..++.|.+++..++... +.++|+.|+||||+|+.+.+...+.+. .. ...+....-.+.|... .
T Consensus 16 eiiGqe-~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~-~~-------~~pCg~C~sC~~~~~g-~ 85 (824)
T PRK07764 16 EVIGQE-HVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG-PT-------STPCGECDSCVALAPG-G 85 (824)
T ss_pred HhcCcH-HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccC-CC-------CCCCcccHHHHHHHcC-C
Confidence 566755 67788888888877664 679999999999999999887443211 00 0011111111111111 0
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
..+.+..+.+.. ....++++.+ +++.....-..+++-++|||+++..+. ..++.|+..+-.. .....+
T Consensus 86 ~~~~dv~eidaa---s~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~-------~a~NaLLK~LEEp-P~~~~f 153 (824)
T PRK07764 86 PGSLDVTEIDAA---SHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTP-------QGFNALLKIVEEP-PEHLKF 153 (824)
T ss_pred CCCCcEEEeccc---ccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCH-------HHHHHHHHHHhCC-CCCeEE
Confidence 000000000000 0000011110 111100000245666888999997632 2333333333322 144666
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~ 217 (782)
|++|.+. ++- ...|++..++.++..+.+.+.+..+ ...++....|++.++|.+..+.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 7666443 221 2678899999999888888744332 2244567889999999884443
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=9.9e-05 Score=73.45 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=89.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
+.+.|+|..|+|||.|++++++. ...+ -..+++++..+ +....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~-~~~~--~~~v~y~~~~~------~~~~~---------------------------- 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR-FEQR--GEPAVYLPLAE------LLDRG---------------------------- 88 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHhC--CCcEEEeeHHH------HHhhh----------------------------
Confidence 57899999999999999999876 2211 23457776532 11100
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCc-cchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc----cC--------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINE-MDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK----QS-------- 170 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~----~~-------- 170 (782)
..+.+. +++- -++|+||+.... ...|.. .+-++.+.+. ..|..||+||+... ..
T Consensus 89 -~~~~~~-----~~~~-d~LiiDDi~~~~~~~~~~~---~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~SRl 155 (234)
T PRK05642 89 -PELLDN-----LEQY-ELVCLDDLDVIAGKADWEE---ALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKSRL 155 (234)
T ss_pred -HHHHHh-----hhhC-CEEEEechhhhcCChHHHH---HHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHHHH
Confidence 001111 1211 268899997431 123321 1222222222 35677899888751 11
Q ss_pred --CCeeecCCCCHHHHHHHHHh-hhcc-ccchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 171 --GKVIKFPSMSTEESLNLLKN-EFSD-HQVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 171 --~~~~~l~~L~~~~~~~Lf~~-~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
+.++++++++.++-.++.++ +... -.-++++..-|++++.|..-.+..+-..|
T Consensus 156 ~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 16788999999999999985 4332 33456888999999999876554443333
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.05 E-value=5.5e-05 Score=85.89 Aligned_cols=206 Identities=11% Similarity=0.092 Sum_probs=106.0
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccc-ccc-ceEEEEEccc---ccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIAS-SSC-YTTLWINKAE---KYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~~f-~~~~wv~~~~---~~~~~~~~~~i~ 76 (782)
|++|-+ ..+..+.+.+.......+.|+|++|+||||+|+.+++...... ..| ...-|+.+.. ..+...+...++
T Consensus 155 ~iiGqs-~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 155 EIVGQE-RAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred hceeCc-HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 466666 6666777776655566899999999999999999988732211 111 1123554432 112222222221
Q ss_pred Hhh---------------ccCCCchhhhhhhh--------hhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc
Q 039334 77 RQA---------------LCESPNIEEWEEQE--------EEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM 133 (782)
Q Consensus 77 ~~~---------------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~ 133 (782)
... +... ...+.-... ..+.. ....+..+.+. ++++++.++-|+.|....
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~-~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~-----Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPE-PKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKV-----LEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCc-hhcCchhhcCCCeEEEeccccC-CHHHHHHHHHH-----HhhCeEEeecceeccCCc
Confidence 111 1000 000000000 00000 11133444455 467777777666664411
Q ss_pred chhHHHHhhhhhhhhcCCCCCCCCcEEEE--EeeccccCC-------CeeecCCCCHHHHHHHHHhhhccc--cchhHHH
Q 039334 134 DENELVKEASSDFKNLLPSVQPDHLKIIM--TRRTTKQSG-------KVIKFPSMSTEESLNLLKNEFSDH--QVSGELF 202 (782)
Q Consensus 134 ~~~~~~~~~~~~~~~~~p~~~~~gs~Iiv--TTr~~~~~~-------~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~ 202 (782)
.. |..+...++... +...|++ ||++..... ..+.+.+++.+|.+++++++.... ...+++.
T Consensus 307 ~~-------~~~ik~~~~~~~-~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal 378 (615)
T TIGR02903 307 NV-------PKYIKKLFEEGA-PADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVE 378 (615)
T ss_pred cc-------chhhhhhcccCc-cceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 22 333333333322 3344444 566553211 467889999999999999944332 2334566
Q ss_pred HHHHHhcCCcHHHHHHHHHHH
Q 039334 203 EFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 203 ~~i~~~c~glPlai~~~~~~l 223 (782)
..|++.+..-+.|+..++.+.
T Consensus 379 ~~L~~ys~~gRraln~L~~~~ 399 (615)
T TIGR02903 379 ELIARYTIEGRKAVNILADVY 399 (615)
T ss_pred HHHHHCCCcHHHHHHHHHHHH
Confidence 666666655577777766553
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00012 Score=81.54 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=100.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccc----cc--------------cceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIAS----SS--------------CYTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~----~~--------------f~~~~wv~~ 62 (782)
|+||=+ ..+..+.+++..++.+. +-++|+.|+||||+|+.+.+.-.... .. |--++++..
T Consensus 17 divGq~-~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 17 ELVGQE-HVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 566766 77788888888777664 57899999999999999977632210 00 111122222
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+.... .+..++++..+.. . -..+++-++|+|+++.. .. ..
T Consensus 96 ~~~~~-vd~ir~l~~~~~~----------------------------~----p~~~~~kVvIIDEad~l--s~-----~a 135 (527)
T PRK14969 96 ASNTQ-VDAMRELLDNAQY----------------------------A----PTRGRFKVYIIDEVHML--SK-----SA 135 (527)
T ss_pred cccCC-HHHHHHHHHHHhh----------------------------C----cccCCceEEEEcCcccC--CH-----HH
Confidence 11111 1112222222111 0 02466779999999865 21 22
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glP 213 (782)
.+.++..+-.. +....+|++|.+. ..- ...+++.+++.++..+.+.+.+..+ ...++....|++.++|.+
T Consensus 136 ~naLLK~LEep-p~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gsl 214 (527)
T PRK14969 136 FNAMLKTLEEP-PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSM 214 (527)
T ss_pred HHHHHHHHhCC-CCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 33333222221 2447777777554 222 1677899999999888877744322 234456788999999977
Q ss_pred HHH
Q 039334 214 AAI 216 (782)
Q Consensus 214 lai 216 (782)
-.+
T Consensus 215 r~a 217 (527)
T PRK14969 215 RDA 217 (527)
T ss_pred HHH
Confidence 533
No 104
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.05 E-value=8e-06 Score=85.03 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc--cchhHHHHHHHHhhccCCCchhhhhhhhhhhhccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK--YSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDG 100 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (782)
-..++|+|++|+|||||++.+++.... .+|+.++||.+.+. .++.++++.+...+-....+. +.. . .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~--nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~----p~~-~-~--- 236 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR--NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDE----PAS-R-H--- 236 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc--cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCC----ChH-H-H---
Confidence 346899999999999999999998332 46999999999755 799999999965544322110 000 0 0
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
......+.+....+...|++.+|++|.+..
T Consensus 237 ~~va~~v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 237 VQVAEMVIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEChhH
Confidence 011111122222222469999999999874
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00017 Score=77.48 Aligned_cols=173 Identities=13% Similarity=0.151 Sum_probs=98.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhccccc-----ccccce-EEEEEcccccchhHHHHH
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIA-----SSSCYT-TLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~~~ 74 (782)
|++|-+ +..+.+.+++..+..+ .+-++|+.|+||||+|+.+.+.-... ...|.. ++-+.......+ +-.++
T Consensus 18 ~iig~~-~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~ 95 (367)
T PRK14970 18 DVVGQS-HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRN 95 (367)
T ss_pred hcCCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHH
Confidence 466666 7788889988877654 78899999999999999997762210 011111 111111111111 12222
Q ss_pred HHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCC
Q 039334 75 ISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQ 154 (782)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~ 154 (782)
+++++... . ..+++-++++|+++.. .. ..+..+...+...
T Consensus 96 l~~~~~~~--------------------------p------~~~~~kiviIDE~~~l--~~-----~~~~~ll~~le~~- 135 (367)
T PRK14970 96 LIDQVRIP--------------------------P------QTGKYKIYIIDEVHML--SS-----AAFNAFLKTLEEP- 135 (367)
T ss_pred HHHHHhhc--------------------------c------ccCCcEEEEEeChhhc--CH-----HHHHHHHHHHhCC-
Confidence 33322110 0 2345557999998754 21 1233333323221
Q ss_pred CCCcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHh-hhccc-cchhHHHHHHHHhcCCcHHHH
Q 039334 155 PDHLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKN-EFSDH-QVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 155 ~~gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~-~~~~~-~~~~~~~~~i~~~c~glPlai 216 (782)
+....+|++|... ... ...+++++++.++....+.. +.... .-.++....+++.++|.+-.+
T Consensus 136 ~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 136 PAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 2335666666443 211 25788999999998888887 33222 245678899999999976543
No 106
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.05 E-value=2.1e-05 Score=82.47 Aligned_cols=164 Identities=19% Similarity=0.371 Sum_probs=103.8
Q ss_pred cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEccc-CCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc
Q 039334 575 FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSE-VGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL 653 (782)
Q Consensus 575 ~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~ 653 (782)
+..+.+++.|++++| .+..+|.+. ++|+.|.+++ +.++.++. .+|.+|+.|.+++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~------------~LP~nLe~L~Ls~Cs~L~sLP- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLP--NELTEITIENCNNLTTLPG------------SIPEGLEKLTVCHCPEISGLP- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCC--CCCcEEEccCCCCcccCCc------------hhhhhhhheEccCcccccccc-
Confidence 444788999999988 455555332 4699999987 33333221 234589999999997776665
Q ss_pred CCCCCCCCEEEeecCCCccccccccccceeeccccccC--CCCCCCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEe
Q 039334 654 TTALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSL--TKLPEMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLD 730 (782)
Q Consensus 654 ~~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l--~~l~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~ 730 (782)
++|+.|++..+....++.-.++|+.|.+.++... ..++. .--++|+.|++.+|..+ .+|. +. .+|+.|.
T Consensus 112 ----~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 112 ----ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ----cccceEEeCCCCCcccccCcchHhheecccccccccccccc-ccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 4788899987766555555557888888543211 11121 11268999999999654 3454 44 6999999
Q ss_pred ccCCC-----CC--CCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 731 ISNTG-----IR--EIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 731 l~~~~-----l~--~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
++.|. +. .+|+++ .|.....+.++.|.+++-.
T Consensus 184 ls~n~~~sLeI~~~sLP~nl----~L~f~n~lkL~~~~f~d~~ 222 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL----DIDLQNSVLLSPDVFKDKN 222 (426)
T ss_pred ecccccccccCccccccccc----EechhhhcccCHHHhhccc
Confidence 98763 11 456554 2333333445566666644
No 107
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=1.1e-06 Score=85.22 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=45.7
Q ss_pred cCCCCccEEEccCCCCCCCCC----CCCCCCCcEEEccCCCCCCCCCCc-cCCCcccEEEccCCCCCCcccccccCCCCC
Q 039334 484 DGMAQLQSLNLSRCPMKSLPS----LPKLTKLRFLILRQCSCLEYMPSL-KELHELEIIDLSGATSLSSFQQLDFSSHTN 558 (782)
Q Consensus 484 ~~l~~L~~L~l~~~~l~~lp~----l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 558 (782)
...+.++.||+.+|.++.+.. +.++|.|+.|+++.|++...+..+ ..+.+|+.|-+.+...........+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345677777777777765433 567777777777777655444444 244556666555543211111223334444
Q ss_pred ccEEEccCC
Q 039334 559 LQMVDLSYT 567 (782)
Q Consensus 559 L~~L~l~~~ 567 (782)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 455554444
No 108
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=0.00015 Score=71.49 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
.+.+.|+|+.|+|||+|++.+++. .+. .+++.. .+...++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~---~~~-----~~i~~~------~~~~~~~~~------------------------ 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK---SDA-----LLIHPN------EIGSDAANA------------------------ 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh---cCC-----EEecHH------HcchHHHHh------------------------
Confidence 457999999999999999998876 111 244321 111111110
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc--------------
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-------------- 168 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-------------- 168 (782)
+.+ -+|++||+......+ ..+-++.+.+. ..|..||+|++...
T Consensus 86 -------------~~~--~~l~iDDi~~~~~~~-----~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 86 -------------AAE--GPVLIEDIDAGGFDE-----TGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKSRL 142 (226)
T ss_pred -------------hhc--CeEEEECCCCCCCCH-----HHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHHHH
Confidence 112 378889997542121 12222222222 34677999988641
Q ss_pred cCCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHH
Q 039334 169 QSGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAK 221 (782)
Q Consensus 169 ~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~ 221 (782)
....++++++++.++-.+++++.+.. -.-++++..-|++.+.|..-++..+-.
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 12278899999999999999995433 344678899999999988776654333
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00016 Score=81.15 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=104.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||-+ ..++.+.+++..++.+ .+-++|+.|+||||+|+.+.+.-... ..... . -.-..++....-.+.|.....
T Consensus 25 dliGq~-~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~-~~~~~-~-~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 25 DLIGQE-AMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE-GPDGD-G-GPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC-Ccccc-C-CCccccCcccHHHHHHhcCCC
Confidence 577766 7888899998887765 58899999999999999998863321 10000 0 000001111122222222111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+........++.++.+.++... ..+++-++|+|++...+.+ ..+.++..+-.. ..++++
T Consensus 101 ~---Dv~e~~a~s~~gvd~IReIie~~~~~P----~~a~~KVvIIDEad~Ls~~-------a~naLLKtLEeP-p~~~~f 165 (598)
T PRK09111 101 V---DVLEMDAASHTGVDDIREIIESVRYRP----VSARYKVYIIDEVHMLSTA-------AFNALLKTLEEP-PPHVKF 165 (598)
T ss_pred C---ceEEecccccCCHHHHHHHHHHHHhch----hcCCcEEEEEEChHhCCHH-------HHHHHHHHHHhC-CCCeEE
Confidence 1 000000000000011111222111110 2355668999999866222 122222222211 244777
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
|++|... ++. ...+++..++.++....+.+.+..+ ...++....|++.++|.+..+...
T Consensus 166 Il~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 166 IFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred EEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7766433 221 2678899999999999888843332 334577889999999998655443
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00012 Score=81.70 Aligned_cols=199 Identities=13% Similarity=0.152 Sum_probs=103.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ ..++.|.+++..++.+. +-++|+.|+||||+|+.+.+.-..... .+ ..+++.....+.|...-+
T Consensus 14 eivGq~-~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~-------~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 14 EVVGQE-HVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQG-PT-------ATPCGVCESCVALAPNGP 84 (584)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccC-CC-------CCcccccHHHHHhhcccC
Confidence 567755 77888899988877665 678999999999999999876332110 00 011111112222211000
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.+.-+.+........+..++.+.+.... ..+++-++|+|++...+. ...+.++..+... .....+
T Consensus 85 ~-~~dvieidaas~~gvd~iRel~~~~~~~P----~~~~~KVvIIDEah~Lt~-------~A~NALLK~LEEp-p~~~~f 151 (584)
T PRK14952 85 G-SIDVVELDAASHGGVDDTRELRDRAFYAP----AQSRYRIFIVDEAHMVTT-------AGFNALLKIVEEP-PEHLIF 151 (584)
T ss_pred C-CceEEEeccccccCHHHHHHHHHHHHhhh----hcCCceEEEEECCCcCCH-------HHHHHHHHHHhcC-CCCeEE
Confidence 0 00000000000000000111111111110 135556889999987622 2334444333332 234666
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHH-HHHHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPA-AITMIAKA 222 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPl-ai~~~~~~ 222 (782)
|++|.+. ++- ...+++.+++.++..+.+.+.+..+ ...++....|++..+|.+- ++..+-..
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6666443 221 2678999999999888887733322 2345677889999999774 44444333
No 111
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00023 Score=78.30 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=100.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc----ccc--------------ceEEEEEc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS----SSC--------------YTTLWINK 62 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~----~~f--------------~~~~wv~~ 62 (782)
|++|-+ .-+..+.+++..+..+ ...++|+.|+||||+|+.++..-.... .++ -.++++..
T Consensus 17 diiGq~-~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 17 EVIGQE-IVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HccChH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 567777 7788888888777655 456899999999999999877522100 001 01122221
Q ss_pred ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh
Q 039334 63 AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA 142 (782)
Q Consensus 63 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~ 142 (782)
+....+.+ .+.|.. .+... -..+++-++|+|+++.-+ ...
T Consensus 96 as~~gvd~-ir~I~~----------------------------~~~~~----P~~~~~KVvIIDEad~Lt-------~~a 135 (486)
T PRK14953 96 ASNRGIDD-IRALRD----------------------------AVSYT----PIKGKYKVYIIDEAHMLT-------KEA 135 (486)
T ss_pred ccCCCHHH-HHHHHH----------------------------HHHhC----cccCCeeEEEEEChhhcC-------HHH
Confidence 11111110 111111 11111 124667799999998651 122
Q ss_pred hhhhhhcCCCCCCCCcEEEEEeecc-cc------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcH
Q 039334 143 SSDFKNLLPSVQPDHLKIIMTRRTT-KQ------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 143 ~~~~~~~~p~~~~~gs~IivTTr~~-~~------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glP 213 (782)
.+.+...+... +++..+|++|.+. .. ....+.+.+++.++....+.+.+.. -...++....|++.++|.+
T Consensus 136 ~naLLk~LEep-p~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~l 214 (486)
T PRK14953 136 FNALLKTLEEP-PPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGM 214 (486)
T ss_pred HHHHHHHHhcC-CCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 33333333322 2345566555432 11 1257889999999988877773322 2334567888999999987
Q ss_pred HHHHHHH
Q 039334 214 AAITMIA 220 (782)
Q Consensus 214 lai~~~~ 220 (782)
..+....
T Consensus 215 r~al~~L 221 (486)
T PRK14953 215 RDAASLL 221 (486)
T ss_pred HHHHHHH
Confidence 6554444
No 112
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.2e-07 Score=89.95 Aligned_cols=154 Identities=23% Similarity=0.198 Sum_probs=94.5
Q ss_pred CCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCch-HHhcCCCCccEEEccCCCCCC-C-CC-C-CCCCC
Q 039334 437 SFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPD-ELFDGMAQLQSLNLSRCPMKS-L-PS-L-PKLTK 510 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~l~~-l-p~-l-~~l~~ 510 (782)
.|..|+.|+|+++.+...+ ..+.+-.+|+.|+++.|.++..... -++.++..|..|+++.|.+.. . .. + .--++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 3444444455554443332 3466667777777777766654443 345677788888888876431 1 11 1 12356
Q ss_pred CcEEEccCCCCCC---CCCCc-cCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC---CCcCcCCCCcccE
Q 039334 511 LRFLILRQCSCLE---YMPSL-KELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP---WLPKFTDLKHLSR 583 (782)
Q Consensus 511 L~~L~l~~~~~~~---~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~l~~~~~l~~L~~ 583 (782)
|..|+++++...- .+..+ .++++|..|+++++..+.......|.+++.|++|.++.|..- .+-.+...|.|.+
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 7777777764211 12222 677888888888877666655566777888888888877643 2335677888888
Q ss_pred EEecCcC
Q 039334 584 ILLRGCR 590 (782)
Q Consensus 584 L~l~~~~ 590 (782)
|++.+|-
T Consensus 368 Ldv~g~v 374 (419)
T KOG2120|consen 368 LDVFGCV 374 (419)
T ss_pred EEecccc
Confidence 8888763
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00022 Score=80.67 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=98.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccc--cceE--EEEEcccccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSS--CYTT--LWINKAEKYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~--f~~~--~wv~~~~~~~~~~~~~~i~ 76 (782)
|+||=+ ..++.+.+++..++.+ ..-++|+.|+||||+|+.+++.-...... +..+ +-.+....+++.++
T Consensus 19 dIiGQe-~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei----- 92 (725)
T PRK07133 19 DIVGQD-HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM----- 92 (725)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE-----
Confidence 567766 7788888888877655 45689999999999999998762221100 0000 00000000110000
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
...+ .....+..++.+.+.... ..+++-++|+|++...+.+ .+..++..+-.. +.
T Consensus 93 ---daas----------n~~vd~IReLie~~~~~P----~~g~~KV~IIDEa~~LT~~-------A~NALLKtLEEP-P~ 147 (725)
T PRK07133 93 ---DAAS----------NNGVDEIRELIENVKNLP----TQSKYKIYIIDEVHMLSKS-------AFNALLKTLEEP-PK 147 (725)
T ss_pred ---eccc----------cCCHHHHHHHHHHHHhch----hcCCCEEEEEEChhhCCHH-------HHHHHHHHhhcC-CC
Confidence 0000 000000111112111110 2466678999999865222 233333222221 23
Q ss_pred CcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHH
Q 039334 157 HLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 157 gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
...+|++|... .+. ...+++.+++.++..+.+...+.. -...++.+..|++.++|.+--+..+
T Consensus 148 ~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred ceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45666555443 221 268899999999988888773322 2234567888999999977544433
No 114
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.93 E-value=0.00018 Score=75.79 Aligned_cols=142 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|=+ +.++.+..++..+..+ ++.++|++|+||||+|+.+++. ...+ +..+..+. .. .+..++.+..+.
T Consensus 22 ~~~~~~-~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~---~~~~---~~~i~~~~-~~-~~~i~~~l~~~~ 92 (316)
T PHA02544 22 ECILPA-ADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNE---VGAE---VLFVNGSD-CR-IDFVRNRLTRFA 92 (316)
T ss_pred HhcCcH-HHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHH---hCcc---ceEeccCc-cc-HHHHHHHHHHHH
Confidence 455555 7788999998877654 5666999999999999999887 2222 23444433 22 222222221111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
.. . ...+.+-++|+||++..+..+. ...+..+.... ..+.++
T Consensus 93 ~~---------------------------~----~~~~~~~vliiDe~d~l~~~~~---~~~L~~~le~~----~~~~~~ 134 (316)
T PHA02544 93 ST---------------------------V----SLTGGGKVIIIDEFDRLGLADA---QRHLRSFMEAY----SKNCSF 134 (316)
T ss_pred Hh---------------------------h----cccCCCeEEEEECcccccCHHH---HHHHHHHHHhc----CCCceE
Confidence 10 0 0123456789999985421211 11223322211 245789
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHh
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~ 190 (782)
|+||...... ...+.++..+.++..+++..
T Consensus 135 Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 135 IITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 9999765221 14566767777777666553
No 115
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00047 Score=75.88 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=102.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhccccccc-------------------ccceEEEEE
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASS-------------------SCYTTLWIN 61 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~ 61 (782)
|+||=+ ..++.+..++..++.+ +.-++|+.|+||||+|+.+.+.-..... +++ ++++.
T Consensus 15 eiiGqe-~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 15 ELIGQE-SVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HccCcH-HHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 567766 7788888888877766 4578999999999999988776221110 111 12221
Q ss_pred cccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHh
Q 039334 62 KAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKE 141 (782)
Q Consensus 62 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~ 141 (782)
.+....+. -.++++++... .. ..+++-++|+|++...+..
T Consensus 93 aas~~gId-~IRelie~~~~--------------------------~P------~~~~~KVvIIDEad~Lt~~------- 132 (535)
T PRK08451 93 AASNRGID-DIRELIEQTKY--------------------------KP------SMARFKIFIIDEVHMLTKE------- 132 (535)
T ss_pred cccccCHH-HHHHHHHHHhh--------------------------Cc------ccCCeEEEEEECcccCCHH-------
Confidence 11111111 11112211110 00 1355668899999865222
Q ss_pred hhhhhhhcCCCCCCCCcEEEEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCc
Q 039334 142 ASSDFKNLLPSVQPDHLKIIMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRS 212 (782)
Q Consensus 142 ~~~~~~~~~p~~~~~gs~IivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~gl 212 (782)
..+.++..+-.. +...++|++|.+.. + ....+++.+++.++....+.+.+... ...++....|++.++|.
T Consensus 133 A~NALLK~LEEp-p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~Gd 211 (535)
T PRK08451 133 AFNALLKTLEEP-PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGS 211 (535)
T ss_pred HHHHHHHHHhhc-CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 222333222221 24577787776651 1 12788999999999888887744332 33457788999999999
Q ss_pred HHHHHHH
Q 039334 213 PAAITMI 219 (782)
Q Consensus 213 Plai~~~ 219 (782)
+--+...
T Consensus 212 lR~alnl 218 (535)
T PRK08451 212 LRDTLTL 218 (535)
T ss_pred HHHHHHH
Confidence 8554443
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00024 Score=77.64 Aligned_cols=171 Identities=18% Similarity=0.132 Sum_probs=98.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc--------------------cccceEEEE
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS--------------------SSCYTTLWI 60 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~--------------------~~f~~~~wv 60 (782)
|++|-+ +.++.+.+++..+..+ .+-++|+.|+||||+|+.+.+.-.... .+++ .+++
T Consensus 18 diiGq~-~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 18 EILGQD-AVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 577866 7788888888877654 577899999999999999987622210 0111 1111
Q ss_pred EcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHH
Q 039334 61 NKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVK 140 (782)
Q Consensus 61 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~ 140 (782)
.-...... +-.+++.+.+.. .. ..+++-++|+|+++.. . .
T Consensus 96 ~g~~~~gi-d~ir~i~~~l~~--------------------------~~------~~~~~kvvIIdead~l--t-----~ 135 (451)
T PRK06305 96 DGASHRGI-EDIRQINETVLF--------------------------TP------SKSRYKIYIIDEVHML--T-----K 135 (451)
T ss_pred eccccCCH-HHHHHHHHHHHh--------------------------hh------hcCCCEEEEEecHHhh--C-----H
Confidence 11000001 111111111110 00 1356678899998754 1 1
Q ss_pred hhhhhhhhcCCCCCCCCcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCC
Q 039334 141 EASSDFKNLLPSVQPDHLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRR 211 (782)
Q Consensus 141 ~~~~~~~~~~p~~~~~gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~g 211 (782)
...+.+...+-.. ..+..+|++|... .+. ...+++.+++.++..+.+.+.+.. ....++.+..|++.++|
T Consensus 136 ~~~n~LLk~lEep-~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 136 EAFNSLLKTLEEP-PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHHHHHhhcC-CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 1223333323221 2346777777543 221 267899999999988888773332 23456788999999999
Q ss_pred cHHH
Q 039334 212 SPAA 215 (782)
Q Consensus 212 lPla 215 (782)
.+--
T Consensus 215 dlr~ 218 (451)
T PRK06305 215 SLRD 218 (451)
T ss_pred CHHH
Confidence 7643
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00028 Score=80.09 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=105.0
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ ..++.|.+++..++.. .+-++|+.|+||||+|+.+.+.-..... .. -..+++.....+.+.....
T Consensus 17 eiiGq~-~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~-~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 17 ELVGQE-HVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTN-DP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HhcCCH-HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC------CCCCCccCHHHHHHhcCCC
Confidence 567766 7788888888777655 4678999999999999999876322110 00 0112233333444433221
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
... -+.+........+..++.+.+... ...+++-++|+|+++.. .. ...+.++..+-.. .....+
T Consensus 89 ~d~---~~i~~~~~~~vd~ir~ii~~~~~~----p~~~~~kVvIIDEa~~L--~~-----~a~naLLk~LEep-p~~tv~ 153 (585)
T PRK14950 89 VDV---IEMDAASHTSVDDAREIIERVQFR----PALARYKVYIIDEVHML--ST-----AAFNALLKTLEEP-PPHAIF 153 (585)
T ss_pred CeE---EEEeccccCCHHHHHHHHHHHhhC----cccCCeEEEEEeChHhC--CH-----HHHHHHHHHHhcC-CCCeEE
Confidence 100 000000000000111111111111 02356678999998865 21 1223333222221 134677
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
|++|.+. ..- ...+.+..++.++....+.+.+... ...++....|++.++|.+..+...
T Consensus 154 Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 154 ILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred EEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7766544 221 1677888999998888888733332 344577889999999988655433
No 118
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.2e-07 Score=88.09 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=122.5
Q ss_pred CceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCC---ccccCCCCCcEE
Q 039334 394 EVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDI---TGIKELKTLSVL 467 (782)
Q Consensus 394 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~---~~l~~l~~L~~L 467 (782)
+++.++++...+.......+.+.+++|+.|++.++.+.+-.-. .-..|+.|+|+.|+..... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667788877776666667777889999999999887654333 6688999999987643332 246788999999
Q ss_pred EeecCCCCCCCc-hHHhcCCCCccEEEccCCC----CCCCCC-CCCCCCCcEEEccCCCCCCC--CCCccCCCcccEEEc
Q 039334 468 EISGASSLKSNP-DELFDGMAQLQSLNLSRCP----MKSLPS-LPKLTKLRFLILRQCSCLEY--MPSLKELHELEIIDL 539 (782)
Q Consensus 468 ~L~~~~~~~~lp-~~~~~~l~~L~~L~l~~~~----l~~lp~-l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l 539 (782)
+|+.|......- ..+-.--.+|..|+++++. .+.+.. ...+++|.+|++++|..+.. +..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999885332221 1111123678889999884 233444 56889999999998865432 122578889999999
Q ss_pred cCCCCCCcccccccCCCCCccEEEccCC
Q 039334 540 SGATSLSSFQQLDFSSHTNLQMVDLSYT 567 (782)
Q Consensus 540 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 567 (782)
+.|..+.......+...+.|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 9988765555556788889999988765
No 119
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.92 E-value=1.7e-05 Score=76.31 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=30.4
Q ss_pred hhhhhhhhHHHHHHHhh---cCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLK---EDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~---~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.||.+ ++.+++...+. .+..+.+.|+|++|+|||+|.++++..
T Consensus 2 fvgR~-~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 2 FVGRE-EEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -TT-H-HHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46777 99999999992 234678999999999999999999888
No 120
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0002 Score=79.69 Aligned_cols=198 Identities=12% Similarity=0.151 Sum_probs=105.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCc-eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGR-STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|=. ..++.|.+++..++. +.+-++|+.|+||||+|+.+.+.-... ...+ ..+++.....+.|.....
T Consensus 17 dIiGQe-~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 17 EVAGQE-TVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE-TAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HhcCCH-HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc-CCCC-------CCCCcccHHHHHHhcCCC
Confidence 566654 667777777777663 567789999999999999998873321 1000 112222222333322111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+.. .....+++ +.+.+........+++-+||+|+++..+ ......++..+-.. .....+
T Consensus 88 p---Dv~eId~a---~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt-------~~a~naLLk~LEEP-~~~~if 152 (624)
T PRK14959 88 V---DVVEIDGA---SNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLT-------REAFNALLKTLEEP-PARVTF 152 (624)
T ss_pred C---ceEEEecc---cccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCC-------HHHHHHHHHHhhcc-CCCEEE
Confidence 0 00000000 00000000 0111111001124666799999998652 12233344333221 134667
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcH-HHHHHHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSP-AAITMIAKAL 223 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glP-lai~~~~~~l 223 (782)
|++|.+. ... ...+++++++.++..+.+.+.+.. ....++..+.|++.++|.+ .|+..+...+
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7766654 221 157889999999999888873322 2245677889999999965 6776665544
No 121
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.91 E-value=0.00012 Score=78.40 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=91.7
Q ss_pred chhhhhhhhHHHHHHHhh---c----------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E----------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~----------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
||.|.+ ..+++|...+. . ...+-+.++|++|+|||++|+++++. ....| +.+..+
T Consensus 146 digGl~-~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~---l~~~f---i~i~~s----- 213 (398)
T PTZ00454 146 DIGGLD-IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH---TTATF---IRVVGS----- 213 (398)
T ss_pred HcCCHH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---cCCCE---EEEehH-----
Confidence 577877 77777777652 1 12346889999999999999999997 22233 222211
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCC-------ccchhHHHHh
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN-------EMDENELVKE 141 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~-------~~~~~~~~~~ 141 (782)
. +......+. ...+...+... ....+.+|+||+++.. ..+.......
T Consensus 214 -~----l~~k~~ge~----------------~~~lr~lf~~A-----~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r 267 (398)
T PTZ00454 214 -E----FVQKYLGEG----------------PRMVRDVFRLA-----RENAPSIIFIDEVDSIATKRFDAQTGADREVQR 267 (398)
T ss_pred -H----HHHHhcchh----------------HHHHHHHHHHH-----HhcCCeEEEEECHhhhccccccccCCccHHHHH
Confidence 1 111111100 00111111112 2467789999997742 0000001112
Q ss_pred hhhhhhhcCCC-CCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccchh-HHHHHHHHhc
Q 039334 142 ASSDFKNLLPS-VQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVSG-ELFEFIAEKG 209 (782)
Q Consensus 142 ~~~~~~~~~p~-~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~i~~~c 209 (782)
.+..+...+-. ....+-.||+||...... ...+.++..+.++-.++|+.........+ --...+++..
T Consensus 268 ~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t 347 (398)
T PTZ00454 268 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRP 347 (398)
T ss_pred HHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHc
Confidence 22333322211 112456789999876322 15578888888888888887433322111 1245677777
Q ss_pred CCcH
Q 039334 210 RRSP 213 (782)
Q Consensus 210 ~glP 213 (782)
.|.-
T Consensus 348 ~g~s 351 (398)
T PTZ00454 348 EKIS 351 (398)
T ss_pred CCCC
Confidence 6653
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00025 Score=79.81 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=100.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccccccceEEEEE-cccccchhHHHHHHHHhh
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWIN-KAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~~ 79 (782)
|+||=+ ..+..+.+++..++.+. +-++|+.|+||||+|+.+.+.-... ...+...|-. +..++......+.+...-
T Consensus 17 eivGQe-~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 17 DITAQE-HITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhccC
Confidence 466655 66777888887777664 7799999999999999988773331 1111001111 112222222233322211
Q ss_pred ccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcE
Q 039334 80 LCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLK 159 (782)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~ 159 (782)
.. +....+........++.++.+.+.... ..+++-++|+|+++..+. ...+.++..+-.. .+.+.
T Consensus 95 ~~---n~~~~d~~s~~~vd~Ir~l~e~~~~~P----~~~~~KVvIIdEad~Lt~-------~a~naLLK~LEeP-p~~tv 159 (620)
T PRK14954 95 SL---NISEFDAASNNSVDDIRQLRENVRYGP----QKGRYRVYIIDEVHMLST-------AAFNAFLKTLEEP-PPHAI 159 (620)
T ss_pred CC---CeEEecccccCCHHHHHHHHHHHHhhh----hcCCCEEEEEeChhhcCH-------HHHHHHHHHHhCC-CCCeE
Confidence 10 000000000000001111111111100 235556789999886521 1233333322321 13466
Q ss_pred EEEEeecc-cc------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHH
Q 039334 160 IIMTRRTT-KQ------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPA 214 (782)
Q Consensus 160 IivTTr~~-~~------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPl 214 (782)
+|++|.+. .+ ....+++.+++.++....+.+.+.. ....++.+..|++.++|..-
T Consensus 160 ~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 160 FIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred EEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 66666443 22 1267899999999988877773332 23456788999999999654
No 123
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.90 E-value=0.00018 Score=81.11 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=105.2
Q ss_pred hhhhhhhHHHHHHHhhc----CC-ceEEEEEcCCCchhHHHHHHHhhccccc--ccccc--eEEEEEcccccchhHHHHH
Q 039334 4 ERVASSQKEKISELLKE----DG-RSTIILIGDPGLWKTWLEREISKNKVIA--SSSCY--TTLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~----~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~--~~~f~--~~~wv~~~~~~~~~~~~~~ 74 (782)
+|.+ +|.++|...|.. .+ ..++-|.|++|+|||+.++.|.+.-... +.... .+++|....-.+...+...
T Consensus 758 PhRE-eEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 758 PCRE-KEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CChH-HHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 4555 889999888843 22 3467899999999999999998762211 11111 2466766665677788888
Q ss_pred HHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccc-cCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCC
Q 039334 75 ISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKE-DKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSV 153 (782)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~ 153 (782)
|.+++....+. . ..........+.+. ..- .+...+||||+|+.-....- ..+-.+..+ |.
T Consensus 837 I~qqL~g~~P~-~---------GlsS~evLerLF~~---L~k~~r~v~IIILDEID~L~kK~Q----DVLYnLFR~-~~- 897 (1164)
T PTZ00112 837 LYKQLFNKKPP-N---------ALNSFKILDRLFNQ---NKKDNRNVSILIIDEIDYLITKTQ----KVLFTLFDW-PT- 897 (1164)
T ss_pred HHHHHcCCCCC-c---------cccHHHHHHHHHhh---hhcccccceEEEeehHhhhCccHH----HHHHHHHHH-hh-
Confidence 88888542210 0 01111111112111 101 23345899999985411111 112122211 21
Q ss_pred CCCCcEEEE--Eeecc--------ccC----CCeeecCCCCHHHHHHHHHhhhcc-c-cchhHHHHHHHH---hcCC-cH
Q 039334 154 QPDHLKIIM--TRRTT--------KQS----GKVIKFPSMSTEESLNLLKNEFSD-H-QVSGELFEFIAE---KGRR-SP 213 (782)
Q Consensus 154 ~~~gs~Iiv--TTr~~--------~~~----~~~~~l~~L~~~~~~~Lf~~~~~~-~-~~~~~~~~~i~~---~c~g-lP 213 (782)
..+++|++ +|... .+. ...+..+|.+.++-.+++...+.. . ...+++.+.+++ ...| .-
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 23455554 33321 111 134677899999999999983322 1 122333333333 3444 45
Q ss_pred HHHHHHHHHHh
Q 039334 214 AAITMIAKALK 224 (782)
Q Consensus 214 lai~~~~~~l~ 224 (782)
.|+.++-.+..
T Consensus 977 KALDILRrAgE 987 (1164)
T PTZ00112 977 KALQICRKAFE 987 (1164)
T ss_pred HHHHHHHHHHh
Confidence 56655555443
No 124
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00016 Score=79.03 Aligned_cols=164 Identities=14% Similarity=0.185 Sum_probs=96.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
.-+.|+|..|+|||+|++++.+.-. ....-..+++++ ..++...+...+... . ...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv~------~~~f~~~~~~~l~~~--------------~---~~~ 197 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYMS------GDEFARKAVDILQKT--------------H---KEI 197 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHHHh--------------h---hHH
Confidence 3588999999999999999998521 111112334444 244555555554320 0 011
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecccc--------------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ-------------- 169 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~-------------- 169 (782)
+.+++. . ...-+||+||+......++. ...+-.+.+.+- ..|..||+|+.....
T Consensus 198 -~~~~~~-----~-~~~dvLiIDDiq~l~~k~~~--~e~lf~l~N~~~---~~~k~iIltsd~~P~~l~~l~~rL~SR~~ 265 (450)
T PRK14087 198 -EQFKNE-----I-CQNDVLIIDDVQFLSYKEKT--NEIFFTIFNNFI---ENDKQLFFSSDKSPELLNGFDNRLITRFN 265 (450)
T ss_pred -HHHHHH-----h-ccCCEEEEeccccccCCHHH--HHHHHHHHHHHH---HcCCcEEEECCCCHHHHhhccHHHHHHHh
Confidence 112222 1 23458999999864111111 112222222122 244578888776511
Q ss_pred CCCeeecCCCCHHHHHHHHHhhhccc----cchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 170 SGKVIKFPSMSTEESLNLLKNEFSDH----QVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 170 ~~~~~~l~~L~~~~~~~Lf~~~~~~~----~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
.+-++.+++++.++-.+++++.+... .-++++..-|++.+.|.|-.+.-+-..+
T Consensus 266 ~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 266 MGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12567799999999999999843321 3456889999999999997766554433
No 125
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00056 Score=69.03 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=105.0
Q ss_pred chhhhhhhhHHHHHHHhh---c----------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E----------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~----------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
||=|++ +++++|.+.+. . +..+=|-++|++|+|||-||++|++. ....| +-|.-|
T Consensus 152 dIGGL~-~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~---T~AtF---IrvvgS----- 219 (406)
T COG1222 152 DIGGLD-EQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ---TDATF---IRVVGS----- 219 (406)
T ss_pred hccCHH-HHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc---cCceE---EEeccH-----
Confidence 556777 88888887772 1 12334778999999999999999998 33333 333322
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCC--------ccchhHHHH
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN--------EMDENELVK 140 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--------~~~~~~~~~ 140 (782)
++++..-++. ...+++.+.. +-...+++|.+|.++.. +.++-++.+
T Consensus 220 -----ElVqKYiGEG--------------------aRlVRelF~l-ArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQR 273 (406)
T COG1222 220 -----ELVQKYIGEG--------------------ARLVRELFEL-AREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQR 273 (406)
T ss_pred -----HHHHHHhccc--------------------hHHHHHHHHH-HhhcCCeEEEEechhhhhcccccCCCCchHHHHH
Confidence 1222222211 1222222211 12577899999987632 113344433
Q ss_pred hhhhhhhhcCCCCCCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhc-cccchhHHHHHHHHhc
Q 039334 141 EASSDFKNLLPSVQPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFS-DHQVSGELFEFIAEKG 209 (782)
Q Consensus 141 ~~~~~~~~~~p~~~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~i~~~c 209 (782)
..++-+.++=-....+.-|||..|...+.-. +.++++.-+.+.=.++|+-... .+-..+--.+.+++.|
T Consensus 274 TmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~ 353 (406)
T COG1222 274 TMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLT 353 (406)
T ss_pred HHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhc
Confidence 3333332211111123389999999885432 6667774444444555554322 2211111257788888
Q ss_pred CCcH----HHHHHHHHHHhhcccc
Q 039334 210 RRSP----AAITMIAKALKKVVQR 229 (782)
Q Consensus 210 ~glP----lai~~~~~~l~~~~~~ 229 (782)
.|.- .|+..=|++++-+..+
T Consensus 354 ~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 354 EGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred CCCchHHHHHHHHHHhHHHHHhcc
Confidence 7774 5666667877766654
No 126
>PLN03150 hypothetical protein; Provisional
Probab=97.86 E-value=3.6e-05 Score=88.18 Aligned_cols=102 Identities=27% Similarity=0.344 Sum_probs=56.2
Q ss_pred ccEEEEecCCCCCC-CccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCC-CCCC-CCCCCCCcEEEcc
Q 039334 441 LTVLVLRNCDMLED-ITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMK-SLPS-LPKLTKLRFLILR 517 (782)
Q Consensus 441 L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~-~lp~-l~~l~~L~~L~l~ 517 (782)
++.|+|++|.+.+. ++.+..+++|+.|+|++|...+.+|..+ +.+++|++|++++|.++ .+|. ++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 45556666555443 3346666666666666664334555554 66666666666666655 3555 6666666666666
Q ss_pred CCCCCCCCCC-ccC-CCcccEEEccCCC
Q 039334 518 QCSCLEYMPS-LKE-LHELEIIDLSGAT 543 (782)
Q Consensus 518 ~~~~~~~~~~-~~~-l~~L~~L~l~~~~ 543 (782)
+|.+.+.+|. +.. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 6665555554 221 2234444444443
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00048 Score=78.05 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=102.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhccccc--------------------ccccceEEEE
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIA--------------------SSSCYTTLWI 60 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~--------------------~~~f~~~~wv 60 (782)
|++|=+ +.++.+..++..++.+. +-++|+.|+||||+|+.+.+.-.+. ..+|+. ..+
T Consensus 18 ~viGq~-~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 18 SVVGQE-ALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HhcCcH-HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 567755 77888999998877664 6789999999999999887753211 012321 223
Q ss_pred EcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHH
Q 039334 61 NKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVK 140 (782)
Q Consensus 61 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~ 140 (782)
..+....+ +-.+++++++.... ..+++-++|+|++..- ..
T Consensus 96 d~~~~~~v-d~Ir~li~~~~~~P--------------------------------~~~~~KVvIIdea~~L--s~----- 135 (614)
T PRK14971 96 DAASNNSV-DDIRNLIEQVRIPP--------------------------------QIGKYKIYIIDEVHML--SQ----- 135 (614)
T ss_pred cccccCCH-HHHHHHHHHHhhCc--------------------------------ccCCcEEEEEECcccC--CH-----
Confidence 22222112 22223333322200 2355568899998865 22
Q ss_pred hhhhhhhhcCCCCCCCCcEEEEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCC
Q 039334 141 EASSDFKNLLPSVQPDHLKIIMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRR 211 (782)
Q Consensus 141 ~~~~~~~~~~p~~~~~gs~IivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~g 211 (782)
..++.++..+... ..++.+|++|... .+- ...+++.+++.++....+.+.+... ...++....|++.++|
T Consensus 136 ~a~naLLK~LEep-p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 136 AAFNAFLKTLEEP-PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHHHHHhCC-CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 2233343333322 2446666666443 222 2778999999999998888743332 3345678899999999
Q ss_pred cHHHHH
Q 039334 212 SPAAIT 217 (782)
Q Consensus 212 lPlai~ 217 (782)
..--+.
T Consensus 215 dlr~al 220 (614)
T PRK14971 215 GMRDAL 220 (614)
T ss_pred CHHHHH
Confidence 765443
No 128
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.86 E-value=0.00012 Score=78.84 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=88.7
Q ss_pred chhhhhhhhHHHHHHHhh---c----------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E----------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~----------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
||.|.+ ++++++.+.+. . ....-+.++|++|+|||++|+++++. ....| +.|..+.
T Consensus 184 DIgGl~-~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e---l~~~f---i~V~~se---- 252 (438)
T PTZ00361 184 DIGGLE-QQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE---TSATF---LRVVGSE---- 252 (438)
T ss_pred HhcCHH-HHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh---hCCCE---EEEecch----
Confidence 566777 77777777662 1 12335778999999999999999997 22333 2222111
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc--------cchhHHHH
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE--------MDENELVK 140 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~ 140 (782)
+ ......+. ...+...+... ..+.+.+|+||+++..- ..+.+. .
T Consensus 253 --L----~~k~~Ge~----------------~~~vr~lF~~A-----~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~-q 304 (438)
T PTZ00361 253 --L----IQKYLGDG----------------PKLVRELFRVA-----EENAPSIVFIDEIDAIGTKRYDATSGGEKEI-Q 304 (438)
T ss_pred --h----hhhhcchH----------------HHHHHHHHHHH-----HhCCCcEEeHHHHHHHhccCCCCCCcccHHH-H
Confidence 1 11111100 00011111111 24667899999976320 011111 1
Q ss_pred hhhhhhhhcCCC-CCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccchhH-HHHHHHHh
Q 039334 141 EASSDFKNLLPS-VQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEFIAEK 208 (782)
Q Consensus 141 ~~~~~~~~~~p~-~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~i~~~ 208 (782)
..+..++..+-. ....+-+||+||...... ...+.++..+.++-.++|..........++ ....++..
T Consensus 305 r~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~ 384 (438)
T PTZ00361 305 RTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMA 384 (438)
T ss_pred HHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHh
Confidence 112222211110 112357888888866221 157788999999999999873332211111 24556666
Q ss_pred cCCc
Q 039334 209 GRRS 212 (782)
Q Consensus 209 c~gl 212 (782)
+.|+
T Consensus 385 t~g~ 388 (438)
T PTZ00361 385 KDEL 388 (438)
T ss_pred cCCC
Confidence 6554
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.80 E-value=0.0005 Score=75.24 Aligned_cols=167 Identities=13% Similarity=0.177 Sum_probs=86.2
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhccccc--ccccceEEEEEccccc
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIA--SSSCYTTLWINKAEKY 66 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~ 66 (782)
|+.|.+ ++++++...+.- ...+-+.++|++|+|||++|+++++.-... ...+....++.+...
T Consensus 183 dIgGl~-~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 183 DIGGLD-SQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HcCChH-HHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 456777 777777776521 123358899999999999999999972110 000112234443221
Q ss_pred chhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCC--ccc---hhHHHHh
Q 039334 67 SSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN--EMD---ENELVKE 141 (782)
Q Consensus 67 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~---~~~~~~~ 141 (782)
+ ++.....+. ......+-...++. ...+++++|+||+++.. .++ ..+....
T Consensus 261 ---e----Ll~kyvGet-------------e~~ir~iF~~Ar~~----a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~ 316 (512)
T TIGR03689 261 ---E----LLNKYVGET-------------ERQIRLIFQRAREK----ASDGRPVIVFFDEMDSIFRTRGSGVSSDVETT 316 (512)
T ss_pred ---h----hcccccchH-------------HHHHHHHHHHHHHH----hhcCCCceEEEehhhhhhcccCCCccchHHHH
Confidence 1 111110000 00000011111111 01467899999999842 001 1112222
Q ss_pred hhhhhhhcCCCCC-CCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhcc
Q 039334 142 ASSDFKNLLPSVQ-PDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSD 194 (782)
Q Consensus 142 ~~~~~~~~~p~~~-~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~ 194 (782)
....++..+.... .++..||.||.....- ...++++..+.++..++|+..+..
T Consensus 317 il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 317 VVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2344443333222 2345667777665221 145789999999999999986543
No 130
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00045 Score=77.35 Aligned_cols=193 Identities=15% Similarity=0.128 Sum_probs=101.1
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ ..++++.+++..++.+ .+-++|+.|+||||+|+.+++.-... ..... .++....-.+.|...-.
T Consensus 17 diiGqe-~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~-------~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 17 SLEGQD-FVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTP-------MPCGECSSCKSIDNDNS 87 (563)
T ss_pred HccCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCC-------CCCccchHHHHHHcCCC
Confidence 577766 7788999999887655 47789999999999999998873321 10000 00111111111111000
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+........+..++.+.+... -..+++-++|+|++...+ ...++.++..+... +....+
T Consensus 88 ~---dv~~idgas~~~vddIr~l~e~~~~~----p~~~~~KVvIIDEa~~Ls-------~~a~naLLK~LEep-p~~~vf 152 (563)
T PRK06647 88 L---DVIEIDGASNTSVQDVRQIKEEIMFP----PASSRYRVYIIDEVHMLS-------NSAFNALLKTIEEP-PPYIVF 152 (563)
T ss_pred C---CeEEecCcccCCHHHHHHHHHHHHhc----hhcCCCEEEEEEChhhcC-------HHHHHHHHHhhccC-CCCEEE
Confidence 0 00000000000000000111111111 024566689999988652 12334444333322 244667
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
|.+|.+. +.- ...+++.+++.++..+.+.+.... -...++....|++.++|.+-.+..
T Consensus 153 I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 153 IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6666543 211 256889999999988888873322 233457788899999998854443
No 131
>PLN03150 hypothetical protein; Provisional
Probab=97.80 E-value=7.5e-05 Score=85.60 Aligned_cols=107 Identities=20% Similarity=0.288 Sum_probs=86.5
Q ss_pred CceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEc
Q 039334 419 KLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNL 494 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l 494 (782)
.++.|++.++.+.+..+. .+++|+.|+|++|.+.+.+ +.++.+++|++|+|++|...+.+|..+ +.|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEEC
Confidence 478899999988765544 8899999999999987654 479999999999999997666888886 99999999999
Q ss_pred cCCCCC-CCCC-CCC-CCCCcEEEccCCCCCCCCC
Q 039334 495 SRCPMK-SLPS-LPK-LTKLRFLILRQCSCLEYMP 526 (782)
Q Consensus 495 ~~~~l~-~lp~-l~~-l~~L~~L~l~~~~~~~~~~ 526 (782)
++|.++ .+|. +.. +.++..+++.+|......|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999987 5787 654 3567788888886544333
No 132
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=1.7e-07 Score=101.19 Aligned_cols=121 Identities=27% Similarity=0.322 Sum_probs=76.5
Q ss_pred CCccEEEccCCCCCCCc-CcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCC
Q 039334 557 TNLQMVDLSYTQIPWLP-KFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPC 635 (782)
Q Consensus 557 ~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~ 635 (782)
..|.+.++++|.+..+. ++.-++.|+.|+++.|..... ..+..|++|+.|||++|.+..++.....+ +
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g----------c 232 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLRHVPQLSMVG----------C 232 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhccccccchhh----------h
Confidence 45666677777766654 466677777777777654332 35667778888888887776554333221 3
Q ss_pred CccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc-----cccccceeeccccc
Q 039334 636 SLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS-----ELCNLRKLLLNNCL 689 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~-----~l~~L~~L~L~~~~ 689 (782)
.|+.|.|+|| .++.+-.+.++.+|..|+++.|-+..... .+..|+.|.|.+|+
T Consensus 233 ~L~~L~lrnN-~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 233 KLQLLNLRNN-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hheeeeeccc-HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6777777765 45555556667777777777765553222 55667777777665
No 133
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.75 E-value=0.00042 Score=81.68 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=155.7
Q ss_pred hhhhhhhhHHHHHHHhhc---CCceEEEEEcCCCchhHHHHHHHhhcccccc------cccceEEEEEcccccchhHHHH
Q 039334 3 SERVASSQKEKISELLKE---DGRSTIILIGDPGLWKTWLEREISKNKVIAS------SSCYTTLWINKAEKYSSNLLEE 73 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~------~~f~~~~wv~~~~~~~~~~~~~ 73 (782)
++|-+ .+.+.+...+.+ +...++.+.|.+|||||+++++|... ..++ +.|+. +..-..-..+....+
T Consensus 2 l~GRe-~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~-i~~~~~~~i~~~f~q--~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRE-TELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP-ITQQRGYFIKGKFDQ--FERNIPLSPLVQAFR 77 (849)
T ss_pred CCchH-hHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH-HhccceeeeHhhccc--ccCCCchHHHHHHHH
Confidence 46666 677888887743 44558999999999999999999987 3322 12221 000011113455566
Q ss_pred HHHHhhccCC-Cchhhhhhhhhhh-----------------------------hcccchhhh-hhhchhhhccccCceeE
Q 039334 74 AISRQALCES-PNIEEWEEQEEEE-----------------------------DEDGKKTEG-EMATHQEENKEDKKNYH 122 (782)
Q Consensus 74 ~i~~~~~~~~-~~~~~~~~~~~~~-----------------------------~~~~~~~~~-~~~~~~~~~~l~~kr~L 122 (782)
+++.++..++ .....|....... ....+.+.. .+...+..+.-+.++..
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 6666653321 0111121111000 000011111 22233333334677999
Q ss_pred EEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc---------cCCCeeecCCCCHHHHHHHHHhhhc
Q 039334 123 LVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK---------QSGKVIKFPSMSTEESLNLLKNEFS 193 (782)
Q Consensus 123 lVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~---------~~~~~~~l~~L~~~~~~~Lf~~~~~ 193 (782)
+|+||+.=.....-++++.-..... .+....+.|..+..... ..-..+.|.||+..+...+....++
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~----~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIA----IGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcc----hhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 9999986331122222222222221 00001123333333331 1128899999999999999999888
Q ss_pred c-ccchhHHHHHHHHhcCCcHHHHHHHHHHHhhcc----ccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhh
Q 039334 194 D-HQVSGELFEFIAEKGRRSPAAITMIAKALKKVV----QRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLK 268 (782)
Q Consensus 194 ~-~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk 268 (782)
. ...+.+..+.|.++-.|+|+-+.-+-.++.... +...+.|...+...... ...+.+.+.+..-.+.||.. .|
T Consensus 234 ~~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 234 CTKLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-ATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred CcccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-hhhHHHHHHHHHHHhcCCHH-HH
Confidence 7 555668899999999999999888877776631 11222333222221111 12223556678889999995 99
Q ss_pred hhhhhhhccccCCccccHHHHHHHH
Q 039334 269 NCFWHSIQFFRKYRSIHYNVLITHW 293 (782)
Q Consensus 269 ~cfl~~a~fp~~~~~i~~~~Li~~W 293 (782)
...-..|++-. .|+...|-..|
T Consensus 312 ~Vl~~AA~iG~---~F~l~~La~l~ 333 (849)
T COG3899 312 EVLKAAACIGN---RFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHhCc---cCCHHHHHHHH
Confidence 99988888875 35555554443
No 134
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00065 Score=76.78 Aligned_cols=194 Identities=13% Similarity=0.166 Sum_probs=99.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||-+ +.+..+.+++..+..+ .+-++|+.|+||||+|+.+.+.-..... .+ ..+++.......|...-.
T Consensus 17 ~iiGq~-~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 17 DLTGQE-HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG-LT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HccCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CC-------CCCCCccHHHHHHhcCCC
Confidence 577776 7788888988887765 4578999999999999998877322110 00 001111111111111000
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-+.+........+..++.+.+.... ..+++-++|+|+++.-+.+. .+.++..+-.. ..+..+
T Consensus 88 ~---d~~eid~~s~~~v~~ir~l~~~~~~~p----~~~~~KVvIIdev~~Lt~~a-------~naLLk~LEep-p~~~~f 152 (576)
T PRK14965 88 V---DVFEIDGASNTGVDDIRELRENVKYLP----SRSRYKIFIIDEVHMLSTNA-------FNALLKTLEEP-PPHVKF 152 (576)
T ss_pred C---CeeeeeccCccCHHHHHHHHHHHHhcc----ccCCceEEEEEChhhCCHHH-------HHHHHHHHHcC-CCCeEE
Confidence 0 000000000000001111111111110 23555688899998752222 22222222211 234677
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcH-HHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSP-AAITMI 219 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glP-lai~~~ 219 (782)
|++|.+. ++- ...+++.+++.++....+...+..+ ...++....|++.++|.. .|+..+
T Consensus 153 Il~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 153 IFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7666544 221 1567888999988887777633332 234567788999999966 344333
No 135
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.74 E-value=0.00079 Score=73.37 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=88.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
..+.|+|+.|+|||.|++++++. ...+..-..+++++. .++...+...+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~-l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~~-------------------- 189 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNE-ILENNPNAKVVYVSS------EKFTNDFVNALRNNK-------------------- 189 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHH-HHHhCCCCcEEEEEH------HHHHHHHHHHHHcCC--------------------
Confidence 36889999999999999999997 221211123456653 233344444433210
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCccchhHH--HHhhhhhhhhcCCCCCCCCcEEEEEeeccc---------cC--
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINEMDENEL--VKEASSDFKNLLPSVQPDHLKIIMTRRTTK---------QS-- 170 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~~~~~~~~~~p~~~~~gs~IivTTr~~~---------~~-- 170 (782)
...+.+. ++. .-+|||||++.....++.. .-..+..+. ..|..||+||.... ..
T Consensus 190 ~~~~~~~-----~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~-------~~~~~iiits~~~p~~l~~l~~~l~SR 256 (405)
T TIGR00362 190 MEEFKEK-----YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALH-------ENGKQIVLTSDRPPKELPGLEERLRSR 256 (405)
T ss_pred HHHHHHH-----HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHH-------HCCCCEEEecCCCHHHHhhhhhhhhhh
Confidence 1112222 122 3489999998641111111 111122222 23456888886531 00
Q ss_pred ---CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHH
Q 039334 171 ---GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 171 ---~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~ 217 (782)
+..+.+++.+.++-..++++.+.. ..-++++...|++.+.|..-.+.
T Consensus 257 l~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 257 FEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 146889999999999999883332 33456788999999998765443
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=5.1e-05 Score=80.56 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=49.2
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHH
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEE 73 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 73 (782)
+..+.+...+.. .+.|.+.|++|+|||++|+.+++.... ...|+.+.||++++.++..+++.
T Consensus 182 ~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~-~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 182 TTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTG-EKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcC-CcccceeeEEeecccccHHHHhc
Confidence 667777777765 347888999999999999999987322 34677889999999998877654
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.001 Score=75.34 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=103.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCc-eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGR-STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|-+ +.+..|.+++..++. +.+-++|+.|+||||+|+.+++.-... . .+.. ...++...+..+.+.....
T Consensus 17 ~liGq~-~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~-~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 17 ELVGQE-AIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL-N-SDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hccChH-HHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC-C-cCCC----CCCCCcccHHHHHHhcCCC
Confidence 567766 778888888877654 467789999999999999998873321 1 1100 0112223333333333222
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
...- +.+...........++.+..... ...+++-++|+|+++..+. ..++.++..+-.. .....+
T Consensus 90 ~D~~---ei~~~~~~~vd~IReii~~a~~~----p~~~~~KViIIDEad~Lt~-------~a~naLLK~LEeP-p~~tvf 154 (620)
T PRK14948 90 LDVI---EIDAASNTGVDNIRELIERAQFA----PVQARWKVYVIDECHMLST-------AAFNALLKTLEEP-PPRVVF 154 (620)
T ss_pred ccEE---EEeccccCCHHHHHHHHHHHhhC----hhcCCceEEEEECccccCH-------HHHHHHHHHHhcC-CcCeEE
Confidence 1000 00000000000111111111111 0135566889999986521 2233333322221 133666
Q ss_pred EEEeeccc-cC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHHH
Q 039334 161 IMTRRTTK-QS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 161 ivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
|++|.+.. +. ...+++..++.++....+...+..+ ...++....|++.++|.+..+...
T Consensus 155 IL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 155 VLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred EEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66665542 11 2567788899988887777633322 334567889999999988655433
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.65 E-value=0.0011 Score=64.85 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=56.7
Q ss_pred eEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccccC------------CCeeecCCCCHHHHHHHH
Q 039334 121 YHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQS------------GKVIKFPSMSTEESLNLL 188 (782)
Q Consensus 121 ~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~~------------~~~~~l~~L~~~~~~~Lf 188 (782)
-++++||++.. .+. .+-.+.+.+. ..|..||+|++.+... .-++++++++.++-..+.
T Consensus 87 d~lliDdi~~~--~~~-----~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l 156 (214)
T PRK06620 87 NAFIIEDIENW--QEP-----ALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILI 156 (214)
T ss_pred CEEEEeccccc--hHH-----HHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHH
Confidence 57889999843 211 2222222222 3567899999876321 148999999999988888
Q ss_pred Hhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 189 KNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 189 ~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
++++.. -.-++++..-|++.+.|.--.+
T Consensus 157 ~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 157 FKHFSISSVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence 884432 2345688899999998876444
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0018 Score=72.83 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=101.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ +.++.+.+++..++.+ .+-++|+.|+||||+|+.+.+.-... ..-+ ..+++.....+.|.....
T Consensus 17 ~viGq~-~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 17 DVVGQE-HITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred hccCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCccHHHHHHhcCCC
Confidence 567766 7788888888877655 46679999999999999987762221 1000 122222223333322111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
... -+-+...........++.+.+... -..+++-++|+|++..-+. ..+..++..+... +.+..+
T Consensus 88 ~dv---~eidaas~~~vd~ir~i~~~v~~~----p~~~~~kViIIDE~~~Lt~-------~a~naLLKtLEep-p~~~if 152 (559)
T PRK05563 88 MDV---IEIDAASNNGVDEIRDIRDKVKYA----PSEAKYKVYIIDEVHMLST-------GAFNALLKTLEEP-PAHVIF 152 (559)
T ss_pred CCe---EEeeccccCCHHHHHHHHHHHhhC----cccCCeEEEEEECcccCCH-------HHHHHHHHHhcCC-CCCeEE
Confidence 100 000000000000111111111111 0246666889999986521 2334444333322 234566
Q ss_pred EEEeecc-ccC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHH
Q 039334 161 IMTRRTT-KQS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 161 ivTTr~~-~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~ 217 (782)
|++|... .+- ...+++.+++.++....+...+... ...++....|++.++|.+..+.
T Consensus 153 Ilatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 153 ILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred EEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 6655444 221 1567888999998888887733222 2345678889999999875443
No 140
>PRK08116 hypothetical protein; Validated
Probab=97.62 E-value=0.00026 Score=71.84 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=58.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhh
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTE 104 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (782)
-+.++|.+|+|||.||.++++. ...+ ...++++++ .+++..+........ .....
T Consensus 116 gl~l~G~~GtGKThLa~aia~~-l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~-------------~~~~~--- 170 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANE-LIEK--GVPVIFVNF------PQLLNRIKSTYKSSG-------------KEDEN--- 170 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHHc--CCeEEEEEH------HHHHHHHHHHHhccc-------------cccHH---
Confidence 4789999999999999999998 3322 234566653 334445444432211 00111
Q ss_pred hhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc
Q 039334 105 GEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT 167 (782)
Q Consensus 105 ~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~ 167 (782)
..+ +. +..- =||||||+......+|.. ..+-.+.+..- ..+..+|+||...
T Consensus 171 ~~~-~~-----l~~~-dlLviDDlg~e~~t~~~~--~~l~~iin~r~---~~~~~~IiTsN~~ 221 (268)
T PRK08116 171 EII-RS-----LVNA-DLLILDDLGAERDTEWAR--EKVYNIIDSRY---RKGLPTIVTTNLS 221 (268)
T ss_pred HHH-HH-----hcCC-CEEEEecccCCCCCHHHH--HHHHHHHHHHH---HCCCCEEEECCCC
Confidence 111 11 1222 389999997654456654 22222221111 2456799999854
No 141
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.61 E-value=2.1e-06 Score=92.90 Aligned_cols=57 Identities=26% Similarity=0.383 Sum_probs=22.8
Q ss_pred cCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCC
Q 039334 484 DGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGA 542 (782)
Q Consensus 484 ~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 542 (782)
..|++|++|||+.|.+..+|. ...+. |+.|.+++|. +..+-.+.+|.+|+.||+++|
T Consensus 206 r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred Hhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhhHHhhhhhhccchhHh
Confidence 334444444444444444443 22222 4444444432 223333344444444444443
No 142
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0021 Score=67.16 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=57.2
Q ss_pred CceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecccc-C------CCeeecCCCCHHHHHHHHHh
Q 039334 118 KKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ-S------GKVIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 118 ~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~-~------~~~~~l~~L~~~~~~~Lf~~ 190 (782)
+++-.+|+|+++..+.. ..+.++..+-.+ ++++.+|+||.+... - ...+.+.+++.+++.+.+.+
T Consensus 105 ~~~kv~iI~~a~~m~~~-------aaNaLLK~LEEP-p~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRN-------AANALLKSLEEP-SGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred CCCeEEEECChhhCCHH-------HHHHHHHHHhCC-CCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 44445577999976322 222232222221 245888888888732 1 26788999999999988887
Q ss_pred hhccccchhHHHHHHHHhcCCcHHHHHH
Q 039334 191 EFSDHQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
..+. ..++.+..++..++|.|..+..
T Consensus 177 ~~~~--~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 177 ALPE--SDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred hccc--CChHHHHHHHHHcCCCHHHHHH
Confidence 4322 2234466788999999976543
No 143
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.001 Score=72.66 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=89.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccc-eEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCY-TTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
.-+.|+|.+|+|||+|++++++.- .. .... .++|++. .++..++...+....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l-~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~~------------------- 183 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV-VQ-NEPDLRVMYITS------EKFLNDLVDSMKEGK------------------- 183 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH-HH-hCCCCeEEEEEH------HHHHHHHHHHHhccc-------------------
Confidence 358999999999999999999972 21 2222 4566653 344555555443210
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccc-hhH-HHHhhhhhhhhcCCCCCCCCcEEEEEeecc-c--------c--
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMD-ENE-LVKEASSDFKNLLPSVQPDHLKIIMTRRTT-K--------Q-- 169 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~-~~~-~~~~~~~~~~~~~p~~~~~gs~IivTTr~~-~--------~-- 169 (782)
...+++. .+.+.-+|++||+...... .+. .....+..+. ..|..||+||... . .
T Consensus 184 -~~~f~~~-----~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-------~~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 184 -LNEFREK-----YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH-------DSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred -HHHHHHH-----HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH-------HcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 1112222 2334568999999843001 111 0111223322 2345788888543 1 1
Q ss_pred ---CCCeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcHH
Q 039334 170 ---SGKVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSPA 214 (782)
Q Consensus 170 ---~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glPl 214 (782)
.+-.+.+++.+.+.-..++++... .-.-++++...|++.+.|.--
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHH
Confidence 125778999999999999888332 234466888999999888643
No 144
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=5.6e-06 Score=71.11 Aligned_cols=84 Identities=19% Similarity=0.350 Sum_probs=46.4
Q ss_pred cceeeccccccCCCCCC--CCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEe
Q 039334 680 LRKLLLNNCLSLTKLPE--MKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVD 756 (782)
Q Consensus 680 L~~L~L~~~~~l~~l~~--~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~ 756 (782)
|...+|++| .++.+|. ...+|.++.|++.+| .+.++|. +..+|.|+.|++++|++...|.-+.. |+.+..|+
T Consensus 55 l~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~---L~~l~~Ld 129 (177)
T KOG4579|consen 55 LTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAP---LIKLDMLD 129 (177)
T ss_pred EEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHH---HHhHHHhc
Confidence 334444444 3444441 233455666666655 5666665 66666666666666666655555543 45555566
Q ss_pred CCCCCCCCCccc
Q 039334 757 EETNQAEDVNRG 768 (782)
Q Consensus 757 ~~~n~~~~~~~~ 768 (782)
.-+|.+..++.+
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 666666666554
No 145
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=0.00026 Score=63.68 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999998
No 146
>CHL00176 ftsH cell division protein; Validated
Probab=97.58 E-value=0.00097 Score=75.68 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=90.5
Q ss_pred chhhhhhhhHHHHH---HHhhcCC---------ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKIS---ELLKEDG---------RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~---~~l~~~~---------~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++++. .++.+.. .+-+.++|++|+|||+||+++++. ...+| +.++..
T Consensus 184 dv~G~~-~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e---~~~p~-----i~is~s---- 250 (638)
T CHL00176 184 DIAGIE-EAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE---AEVPF-----FSISGS---- 250 (638)
T ss_pred hccChH-HHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH---hCCCe-----eeccHH----
Confidence 577777 4444444 4443211 235889999999999999999987 22222 222211
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc-------chhHHHHhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM-------DENELVKEA 142 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~-------~~~~~~~~~ 142 (782)
++.. .... .....+...+.+. .+..+++|+|||++.-.. +..+.....
T Consensus 251 ~f~~----~~~g----------------~~~~~vr~lF~~A-----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 305 (638)
T CHL00176 251 EFVE----MFVG----------------VGAARVRDLFKKA-----KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQT 305 (638)
T ss_pred HHHH----Hhhh----------------hhHHHHHHHHHHH-----hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHH
Confidence 1100 0000 0001112223333 357789999999963200 001111122
Q ss_pred hhhhhhcCCC-CCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhcccc-chhHHHHHHHHhcC
Q 039334 143 SSDFKNLLPS-VQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQ-VSGELFEFIAEKGR 210 (782)
Q Consensus 143 ~~~~~~~~p~-~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~i~~~c~ 210 (782)
+..++..+.. ....+-.||.||...... ...+.++..+.++-.++++....... .+......+++.+.
T Consensus 306 L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~ 385 (638)
T CHL00176 306 LNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTP 385 (638)
T ss_pred HHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCC
Confidence 3333322211 112445677777765211 26677888888888888887444322 22334577888888
Q ss_pred Cc
Q 039334 211 RS 212 (782)
Q Consensus 211 gl 212 (782)
|.
T Consensus 386 G~ 387 (638)
T CHL00176 386 GF 387 (638)
T ss_pred CC
Confidence 73
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.58 E-value=0.00035 Score=82.41 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=38.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ ++.++++..|......-+.++|++|+||||+|+.+++.
T Consensus 188 ~~iGr~-~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 188 PVLGRD-DEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred cccCCH-HHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHH
Confidence 468877 78999999887776677789999999999999999987
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.58 E-value=0.0016 Score=71.86 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=89.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
.-+.|+|++|+|||+|++++++.-.. ...--.+++++.. ++...+...+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~~~~~-------------------- 201 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNALRNNT-------------------- 201 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHHcCc--------------------
Confidence 45889999999999999999998221 1111234566532 23333333332200
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCccchh-H-HHHhhhhhhhhcCCCCCCCCcEEEEEeecccc------------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINEMDEN-E-LVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ------------ 169 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~-~-~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~------------ 169 (782)
...+.+. ++ +.-+|||||++...-.++ . ..-..++.+. ..|..||+||.....
T Consensus 202 ~~~~~~~-----~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~-------~~~~~iiits~~~p~~l~~l~~~l~SR 268 (450)
T PRK00149 202 MEEFKEK-----YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALH-------EAGKQIVLTSDRPPKELPGLEERLRSR 268 (450)
T ss_pred HHHHHHH-----Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHH-------HCCCcEEEECCCCHHHHHHHHHHHHhH
Confidence 1112222 12 345899999975311111 1 1111122222 234568888876410
Q ss_pred --CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 170 --SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 170 --~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
.+..+++++.+.++-..++++.... ..-++++...|++.+.|..-.+
T Consensus 269 l~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 269 FEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred hcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHH
Confidence 1157889999999999999983332 3446788999999999886543
No 149
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.57 E-value=0.00076 Score=68.61 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=30.8
Q ss_pred chhhhhh--hhHHHHHHHhhc------C------CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVAS--SQKEKISELLKE------D------GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~--~~~~~l~~~l~~------~------~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+|+++ +++.++..|+.- . ....+.++|++|+||||+|+.+++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 5788883 334444445411 1 2335789999999999999999875
No 150
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=7.5e-05 Score=51.91 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=23.8
Q ss_pred CCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 724 PKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 724 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
++|+.|++++|+|+.+|+.+. +|+.|+.|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~---~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS---NLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT---TCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHh---CCCCCCEEEecCCCCCCCc
Confidence 456777777777777666543 3444446677777777654
No 151
>PRK08118 topology modulation protein; Reviewed
Probab=97.56 E-value=5.3e-05 Score=70.98 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=28.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEE
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLW 59 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~w 59 (782)
.|.|+|++|+||||||+.+++.....--+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999985443356777775
No 152
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.00066 Score=75.89 Aligned_cols=179 Identities=11% Similarity=0.127 Sum_probs=90.4
Q ss_pred chhhhhhhhHHHHHHHh---hc--------C-CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELL---KE--------D-GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l---~~--------~-~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++++.+++ .. . ..+-+-++|++|+|||++|+++++. ...+| +.++. .
T Consensus 56 di~g~~-~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~---~~~~~-----~~i~~----~ 122 (495)
T TIGR01241 56 DVAGID-EAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE---AGVPF-----FSISG----S 122 (495)
T ss_pred HhCCHH-HHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH---cCCCe-----eeccH----H
Confidence 566776 5555555444 21 1 1224778999999999999999987 22222 22221 1
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc--c-----hhHHHHhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM--D-----ENELVKEA 142 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~--~-----~~~~~~~~ 142 (782)
++. ...... ....+...+... ....+++|+|||++.-.. . ..+.....
T Consensus 123 ~~~----~~~~g~----------------~~~~l~~~f~~a-----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~ 177 (495)
T TIGR01241 123 DFV----EMFVGV----------------GASRVRDLFEQA-----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQT 177 (495)
T ss_pred HHH----HHHhcc----------------cHHHHHHHHHHH-----HhcCCCEEEEechhhhhhccccCcCCccHHHHHH
Confidence 111 110000 001112222222 245678999999864200 0 01111122
Q ss_pred hhhhhhcCCC-CCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccc-hhHHHHHHHHhcC
Q 039334 143 SSDFKNLLPS-VQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQV-SGELFEFIAEKGR 210 (782)
Q Consensus 143 ~~~~~~~~p~-~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~i~~~c~ 210 (782)
...++..+-. .+..+-.||.||..+... ...+.++..+.++-.++|+........ .......+++.+.
T Consensus 178 ~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~ 257 (495)
T TIGR01241 178 LNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTP 257 (495)
T ss_pred HHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCC
Confidence 2223221111 112345677777665211 156788888888888888875443221 2223567888887
Q ss_pred Cc-HHHHHH
Q 039334 211 RS-PAAITM 218 (782)
Q Consensus 211 gl-Plai~~ 218 (782)
|. +-.+..
T Consensus 258 G~sgadl~~ 266 (495)
T TIGR01241 258 GFSGADLAN 266 (495)
T ss_pred CCCHHHHHH
Confidence 74 433333
No 153
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=7e-05 Score=52.07 Aligned_cols=39 Identities=31% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCC
Q 039334 463 TLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLP 503 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp 503 (782)
+|++|++++|. +..+|+.+ ++|++|++|++++|+++.++
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l-~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPEL-SNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS--SSHGGHG-TTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCC-CcccCchH-hCCCCCCEEEecCCCCCCCc
Confidence 56666666653 55666554 66666666666666665544
No 154
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=2.3e-05 Score=89.40 Aligned_cols=107 Identities=24% Similarity=0.298 Sum_probs=53.7
Q ss_pred CcCCCCceEEEccCCCC-CCCChhhHhcCCCCceEEEecCCCCCCCC--cc--CCCCccEEEEecCCCCCCCccccCCCC
Q 039334 389 PKKLREVLTLLIDGSRP-CEEDHSTFFNLMPKLQVLAIFKPTFKSLM--SS--SFERLTVLVLRNCDMLEDITGIKELKT 463 (782)
Q Consensus 389 ~~~~~~l~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~ 463 (782)
.....+++.|+++|... ...++..+...+|.|++|.+.+-.+..-- .. .+|+|+.||++++++... ..++++++
T Consensus 118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 34456677777776543 34455566666667777666664442211 11 555555555555544322 44555555
Q ss_pred CcEEEeecCCCCCCCc--hHHhcCCCCccEEEccCCC
Q 039334 464 LSVLEISGASSLKSNP--DELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 464 L~~L~L~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~ 498 (782)
|+.|.+.+-. +..-+ ..+ -.|++|++||+|...
T Consensus 197 Lq~L~mrnLe-~e~~~~l~~L-F~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 197 LQVLSMRNLE-FESYQDLIDL-FNLKKLRVLDISRDK 231 (699)
T ss_pred HHHHhccCCC-CCchhhHHHH-hcccCCCeeeccccc
Confidence 5555554432 11111 122 345555555555543
No 155
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.0016 Score=71.04 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=85.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
.-+.|+|+.|+|||+|++++++.-.. . ...+++++. .++...+...+... .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~-~~~v~yi~~------~~f~~~~~~~l~~~-------------------~- 192 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--S-GGKILYVRS------ELFTEHLVSAIRSG-------------------E- 192 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--c-CCCEEEeeH------HHHHHHHHHHHhcc-------------------h-
Confidence 46889999999999999999997222 1 123455542 23333444333220 0
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc-----c---------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-----Q--------- 169 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-----~--------- 169 (782)
...+++. . .+.-++++||+......++. ...+-.+.+.+- ..|..||+||.... .
T Consensus 193 ~~~f~~~-----~-~~~dvLiIDDiq~l~~k~~~--qeelf~l~N~l~---~~~k~IIlts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 193 MQRFRQF-----Y-RNVDALFIEDIEVFSGKGAT--QEEFFHTFNSLH---TEGKLIVISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred HHHHHHH-----c-ccCCEEEEcchhhhcCChhh--HHHHHHHHHHHH---HCCCcEEEecCCCHHHHhhhHHHHHhhhc
Confidence 1122222 1 33458999998864212221 112222221111 23467888886531 0
Q ss_pred CCCeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcH
Q 039334 170 SGKVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 170 ~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glP 213 (782)
.+..+.+.+++.++-..++++... +-.-++++..-|+..+.|.-
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNV 307 (445)
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Confidence 125778999999999999888322 22345677777888877553
No 156
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.53 E-value=0.0007 Score=66.87 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=98.3
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccce-EEEEEcccccchhHHHHHH--HHhhccCCCc
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYT-TLWINKAEKYSSNLLEEAI--SRQALCESPN 85 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i--~~~~~~~~~~ 85 (782)
+.+..+.+.+.....++...+|++|.|||+-|+++++.--. .+.|.+ +.-.++|..-...-+-..+ +.++..
T Consensus 43 ~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~---- 117 (346)
T KOG0989|consen 43 HVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVREKIKNFAKLTV---- 117 (346)
T ss_pred HHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhhhhcCHHHHhh----
Confidence 55666777777767889999999999999999988876222 222332 2333443322211000000 000000
Q ss_pred hhhhhhhhhhhhcccchhhhhhhchhhhccccCcee-EEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEe
Q 039334 86 IEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNY-HLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTR 164 (782)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTT 164 (782)
.......+ ..++| .||||++++.+.+.|.-.....+.. ...+|.|+.+
T Consensus 118 -----------------~~~~~~~~------~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~--------s~~trFiLIc 166 (346)
T KOG0989|consen 118 -----------------LLKRSDGY------PCPPFKIIILDECDSMTSDAQAALRRTMEDF--------SRTTRFILIC 166 (346)
T ss_pred -----------------ccccccCC------CCCcceEEEEechhhhhHHHHHHHHHHHhcc--------ccceEEEEEc
Confidence 00000001 23444 6778999987555665544444441 2447777777
Q ss_pred ecccc-----CC--CeeecCCCCHHHHHHHHHh-hhcc-ccchhHHHHHHHHhcCCcHH
Q 039334 165 RTTKQ-----SG--KVIKFPSMSTEESLNLLKN-EFSD-HQVSGELFEFIAEKGRRSPA 214 (782)
Q Consensus 165 r~~~~-----~~--~~~~l~~L~~~~~~~Lf~~-~~~~-~~~~~~~~~~i~~~c~glPl 214 (782)
....+ .. .-+..++|..++...-++. +... -+..++..+.|++.++|.--
T Consensus 167 nylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 167 NYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred CChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Confidence 66522 11 5678899999988887777 4322 23445678999999999654
No 157
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.52 E-value=0.00073 Score=63.71 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=46.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
|+||-+ +..+++.-...+++.+-+.|.||+|+||||-+..+++. ......=+.+.-...|+.-
T Consensus 28 dIVGNe-~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 28 DIVGNE-DTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDER 90 (333)
T ss_pred HhhCCH-HHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCcccc
Confidence 789988 88888888878999999999999999999988877776 2211222344455555443
No 158
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.002 Score=68.16 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=97.5
Q ss_pred hhhHHHHHHHhh---cCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCC
Q 039334 8 SSQKEKISELLK---EDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCES 83 (782)
Q Consensus 8 ~~~~~~l~~~l~---~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 83 (782)
+++.+++...|. .++.+ -+.|+|.+|+|||+.++.+.+.-.......+ ++.|.+-.......++..|++++....
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p 101 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVP 101 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCCC
Confidence 388888888873 34444 4889999999999999999998333212222 678888788888999999999886321
Q ss_pred CchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEE
Q 039334 84 PNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMT 163 (782)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivT 163 (782)
. . .....+.-+.+.+.+ .-.++.+++|||+++.-..... +-+..++......+++|++.
T Consensus 102 ~--~---------g~~~~~~~~~l~~~~---~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~~~~v~vi 160 (366)
T COG1474 102 L--T---------GDSSLEILKRLYDNL---SKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGENKVKVSII 160 (366)
T ss_pred C--C---------CCchHHHHHHHHHHH---HhcCCeEEEEEcchhhhccccc-------hHHHHHHhhccccceeEEEE
Confidence 1 0 122223334444441 1147889999999885411110 12222222222334655544
Q ss_pred eeccc----------cC----CCeeecCCCCHHHHHHHHHh
Q 039334 164 RRTTK----------QS----GKVIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 164 Tr~~~----------~~----~~~~~l~~L~~~~~~~Lf~~ 190 (782)
.-... +. ...+..+|=+.+|-.+.+..
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHH
Confidence 43331 11 14466777888888888777
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.0018 Score=71.98 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=88.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
..+.|+|..|+|||.|++++++.. .....-..+++++. .++..++...+... .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yita------eef~~el~~al~~~--------------------~ 367 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVSS------EEFTNEFINSIRDG--------------------K 367 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------------------c
Confidence 358999999999999999999972 21111123456653 33444444333220 0
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc-----c---------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-----Q--------- 169 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-----~--------- 169 (782)
...+++. ++ +--+|||||+......++. ...+-++.+.+- ..|..||+||+... .
T Consensus 368 ~~~f~~~-----y~-~~DLLlIDDIq~l~gke~t--qeeLF~l~N~l~---e~gk~IIITSd~~P~eL~~l~~rL~SRf~ 436 (617)
T PRK14086 368 GDSFRRR-----YR-EMDILLVDDIQFLEDKEST--QEEFFHTFNTLH---NANKQIVLSSDRPPKQLVTLEDRLRNRFE 436 (617)
T ss_pred HHHHHHH-----hh-cCCEEEEehhccccCCHHH--HHHHHHHHHHHH---hcCCCEEEecCCChHhhhhccHHHHhhhh
Confidence 1112222 12 2358999999864212211 111212222111 24567888888751 0
Q ss_pred CCCeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcHHHH
Q 039334 170 SGKVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 170 ~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glPlai 216 (782)
.+-++.+...+.+.-..++++.+. .-.-++++..-|++.+.+..-.+
T Consensus 437 ~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 437 WGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred cCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHH
Confidence 126789999999999999988332 23345678888888887764433
No 160
>PTZ00202 tuzin; Provisional
Probab=97.49 E-value=0.00046 Score=72.16 Aligned_cols=158 Identities=9% Similarity=0.084 Sum_probs=94.0
Q ss_pred chhhhhhhhHHHHHHHhhcC---CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 2 DSERVASSQKEKISELLKED---GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~---~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
|-||-+ ++..++...|.+. ..+++.|+|++|+|||||++.+... . + .....+... ...++++.|+++
T Consensus 263 ~FVGRe-aEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~---l--~-~~qL~vNpr---g~eElLr~LL~A 332 (550)
T PTZ00202 263 QFVSRE-AEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK---E--G-MPAVFVDVR---GTEDTLRSVVKA 332 (550)
T ss_pred CCCCcH-HHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc---C--C-ceEEEECCC---CHHHHHHHHHHH
Confidence 456667 7888888887432 2447889999999999999999976 2 1 122333333 669999999999
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhcccc-CceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCC
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKED-KKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDH 157 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 157 (782)
++.+. ...-.++...+.+.+...... |++.+||+-=-.. .-....+.+... +. +...-
T Consensus 333 LGV~p-------------~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg------~~l~rvyne~v~-la-~drr~ 391 (550)
T PTZ00202 333 LGVPN-------------VEACGDLLDFISEACRRAKKMNGETPLLVLKLREG------SSLQRVYNEVVA-LA-CDRRL 391 (550)
T ss_pred cCCCC-------------cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCC------CcHHHHHHHHHH-HH-ccchh
Confidence 99732 111122333334433332233 7777777732111 112345555432 11 11233
Q ss_pred cEEEEEeecccc--CC------CeeecCCCCHHHHHHHHHh
Q 039334 158 LKIIMTRRTTKQ--SG------KVIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 158 s~IivTTr~~~~--~~------~~~~l~~L~~~~~~~Lf~~ 190 (782)
++|++----+.. +. .-|.++.++.++|..-...
T Consensus 392 ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 392 CHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred heeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 888876555521 11 6777888888888775554
No 161
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00018 Score=66.46 Aligned_cols=105 Identities=19% Similarity=0.282 Sum_probs=73.5
Q ss_pred CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC---CCCCCCCcE
Q 039334 437 SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS---LPKLTKLRF 513 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~---l~~l~~L~~ 513 (782)
.......++|++|.+. ..+.|..++.|..|.+++|+ +..+.+.+-..+++|++|.+.+|.+..+.. +..++.|++
T Consensus 40 ~~d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchh-hcccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3445556677776643 34457788888888888885 777777765567889999999988776554 778888999
Q ss_pred EEccCCCCCCCCC----CccCCCcccEEEccCCC
Q 039334 514 LILRQCSCLEYMP----SLKELHELEIIDLSGAT 543 (782)
Q Consensus 514 L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 543 (782)
|.+-+|+....-- .+..+++|++||.....
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9888886433211 14677777777776543
No 162
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0067 Score=63.01 Aligned_cols=195 Identities=12% Similarity=0.105 Sum_probs=102.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCc-eEEEEEcCCCchhHHHHHHHhhcccccc-------------cccceEEEEEcccccc
Q 039334 2 DSERVASSQKEKISELLKEDGR-STIILIGDPGLWKTWLEREISKNKVIAS-------------SSCYTTLWINKAEKYS 67 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------~~f~~~~wv~~~~~~~ 67 (782)
|++|-+ +.++.+.+.+..++. +..-++|+.|+||+++|..+.+.-.... .|.| ..|+.-.-..+
T Consensus 5 ~iiGq~-~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 5 NLIGQP-LAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HhCCHH-HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 577887 888899999888875 5788999999999999988876632211 1122 13332100000
Q ss_pred hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhh
Q 039334 68 SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFK 147 (782)
Q Consensus 68 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~ 147 (782)
-..+-.+-++..+.. +..+... ......++...+... -..+++-++|+|+++..+.. ..+.++
T Consensus 83 g~~~~~~~~~~~~~~-----~~~~~~I-~id~ir~i~~~l~~~----p~~~~~kVvII~~ae~m~~~-------aaNaLL 145 (314)
T PRK07399 83 GKLITASEAEEAGLK-----RKAPPQI-RLEQIREIKRFLSRP----PLEAPRKVVVIEDAETMNEA-------AANALL 145 (314)
T ss_pred ccccchhhhhhcccc-----ccccccC-cHHHHHHHHHHHccC----cccCCceEEEEEchhhcCHH-------HHHHHH
Confidence 000000000110000 0000000 000111122222211 13567778999998865222 223333
Q ss_pred hcCCCCCCCCcEEEEEeeccc-c------CCCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHH
Q 039334 148 NLLPSVQPDHLKIIMTRRTTK-Q------SGKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 148 ~~~p~~~~~gs~IivTTr~~~-~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
..+-.. +.+.+|++|.+.. . ....+++.++++++..+.+.+....+. .+.....++..++|.|..+..
T Consensus 146 K~LEEP--p~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 146 KTLEEP--GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHhCC--CCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-chhHHHHHHHHcCCCHHHHHH
Confidence 222222 2356777776652 1 127889999999999999987422111 111136788999999976543
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0016 Score=67.24 Aligned_cols=181 Identities=10% Similarity=0.089 Sum_probs=92.6
Q ss_pred hhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc-cc---cceEEEEEcccccchhHHHHHHHHhhccCC
Q 039334 9 SQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS-SS---CYTTLWINKAEKYSSNLLEEAISRQALCES 83 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-~~---f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 83 (782)
...+.+...+..++.+ .+-+.|+.|+||+++|..+.+.-.... .. +.++-|+..+..+|+..+. .
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~--------~-- 80 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS--------F-- 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe--------c--
Confidence 3456677777777766 478999999999999999877633321 00 0000011111111111000 0
Q ss_pred Cchhhhhhhhhhhhcccchhhhhhhchhhhcc---ccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 84 PNIEEWEEQEEEEDEDGKKTEGEMATHQEENK---EDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
.+.........+-..+.+++...... ..+++-++|+|+++..+..--+-.-..+++ | ++++.+
T Consensus 81 ------~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----P---p~~~~f 146 (319)
T PRK08769 81 ------IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----P---SPGRYL 146 (319)
T ss_pred ------CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----C---CCCCeE
Confidence 00000000000001111111111111 246677899999886522211111112222 3 245888
Q ss_pred EEEeecccc-C------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHH
Q 039334 161 IMTRRTTKQ-S------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 161 ivTTr~~~~-~------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~ 217 (782)
|++|..... - ...+.+.+++.+++.+.+.+. ...++.+..++..++|.|+.+.
T Consensus 147 iL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~----~~~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 147 WLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ----GVSERAAQEALDAARGHPGLAA 206 (319)
T ss_pred EEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc----CCChHHHHHHHHHcCCCHHHHH
Confidence 888887632 1 166788899999888877652 1223336678999999998654
No 164
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.47 E-value=0.003 Score=64.97 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-----chhHHHHHHHHhhccCCCchhhhhhhhhhhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-----SSNLLEEAISRQALCESPNIEEWEEQEEEED 97 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 97 (782)
...++|||++|.|||.+|+++++. -+..| +-++.++-+ .....++++++....
T Consensus 148 PlgllL~GPPGcGKTllAraiA~e---lg~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~---------------- 205 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKK---MGIEP---IVMSAGELESENAGEPGKLIRQRYREAAD---------------- 205 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHH---cCCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHH----------------
Confidence 346889999999999999999998 22233 344433222 223334444433221
Q ss_pred cccchhhhhhhchhhhccccCceeEEEecCCCCC--cc--chhHHH-HhhhhhhhhcC--------C-----CCCCCCcE
Q 039334 98 EDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN--EM--DENELV-KEASSDFKNLL--------P-----SVQPDHLK 159 (782)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~--~~~~~~-~~~~~~~~~~~--------p-----~~~~~gs~ 159 (782)
.. +-+++.+.|+||+++.. .+ .+.... +.....++..+ + .....+-.
T Consensus 206 ---------~a------~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 206 ---------II------KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred ---------Hh------hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 00 02578999999998742 11 111111 11112232211 1 01124467
Q ss_pred EEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHHHHHHhhcccc
Q 039334 160 IIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQR 229 (782)
Q Consensus 160 IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 229 (782)
||+||..+..-. ..+ ..-+.++=.++++..+....-+.+-..+|++...|.|+.. .|.+-....+.
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df--~GAlrar~yd~ 346 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDF--FGALRARVYDD 346 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchh--hhHHHHHHHHH
Confidence 899998774321 222 2234456666666655554444556778999999988642 33333333444
Q ss_pred chhHHHHHH
Q 039334 230 DSRDLASAI 238 (782)
Q Consensus 230 ~~~~~~~~l 238 (782)
+..+|...+
T Consensus 347 ~v~~~i~~~ 355 (413)
T PLN00020 347 EVRKWIAEV 355 (413)
T ss_pred HHHHHHHHh
Confidence 444555443
No 165
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=6.2e-05 Score=85.95 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=80.3
Q ss_pred CCCceEEEecCCCCC--CCCcc---CCCCccEEEEecCCCCCC--CccccCCCCCcEEEeecCCCCCCCchHHhcCCCCc
Q 039334 417 MPKLQVLAIFKPTFK--SLMSS---SFERLTVLVLRNCDMLED--ITGIKELKTLSVLEISGASSLKSNPDELFDGMAQL 489 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~--~~~~~---~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L 489 (782)
-.+|+.|++.|.... +++.. .+|.|+.|.+.+-.+... .....++++|+.||+++++ +..+ ..+ +.|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GI-S~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGI-SRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHH-hccccH
Confidence 357788888775432 22222 778888888877544322 1345678888888888874 6666 444 778888
Q ss_pred cEEEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCCC-------CCccCCCcccEEEccCCC
Q 039334 490 QSLNLSRCPMKSLPS---LPKLTKLRFLILRQCSCLEYM-------PSLKELHELEIIDLSGAT 543 (782)
Q Consensus 490 ~~L~l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~~ 543 (782)
++|.+++-.+..-.. +.+|++|+.||++........ ..-..||+|+.||.++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888887776665443 677888888888765433221 112557788888887665
No 166
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00027 Score=65.36 Aligned_cols=97 Identities=29% Similarity=0.358 Sum_probs=70.2
Q ss_pred CccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc----cccccceeeccccc--cCCCCCCCCCCCcccEEecc
Q 039334 636 SLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCL--SLTKLPEMKGLEKLEELRLS 709 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~--~l~~l~~~~~l~~L~~L~l~ 709 (782)
+...++|++| .+..++.+..++.|.+|.+++|.++.+.+ .+|+|+.|.+.+|. .+.++..+..||+|++|.+-
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 5566677766 44455556678899999999999988766 67889999998874 23344457788899999998
Q ss_pred cCCCCCCCCC-----CCCCCCcCEEeccCC
Q 039334 710 GCINLTELPN-----LNDFPKLDLLDISNT 734 (782)
Q Consensus 710 ~c~~l~~l~~-----~~~l~~L~~L~l~~~ 734 (782)
+|+ ++.... +..+|+|+.|++..=
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 884 333332 556888999888764
No 167
>PF14516 AAA_35: AAA-like domain
Probab=97.42 E-value=0.0056 Score=64.40 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=109.1
Q ss_pred HHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc-----cchhHHH----HHHHHhhccCC
Q 039334 13 KISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK-----YSSNLLE----EAISRQALCES 83 (782)
Q Consensus 13 ~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~----~~i~~~~~~~~ 83 (782)
++.+.|.+. ...+.|.|+-.+|||+|...+.+.... .. ..++++++... .+....+ ..|.++++.+.
T Consensus 22 ~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~~-~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~ 97 (331)
T PF14516_consen 22 ECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--QG-YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDE 97 (331)
T ss_pred HHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--CC-CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCCh
Confidence 334444332 448999999999999999999887322 23 34578887542 2344444 45555554432
Q ss_pred CchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccc-hh--HH--HHhhhhhhhhcCCCCCCCC-
Q 039334 84 PNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMD-EN--EL--VKEASSDFKNLLPSVQPDH- 157 (782)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~-~~--~~--~~~~~~~~~~~~p~~~~~g- 157 (782)
.-.+.|+.. ..........+.+++ ....+++.+|+||+|+..--. .. ++ .-..|-+-...-|. ...
T Consensus 98 ~l~~~w~~~----~~~~~~~~~~~~~~l--l~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~--~~~L 169 (331)
T PF14516_consen 98 KLDEYWDEE----IGSKISCTEYFEEYL--LKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI--WQKL 169 (331)
T ss_pred hHHHHHHHh----cCChhhHHHHHHHHH--HhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc--cceE
Confidence 111223311 112223334444431 011378999999999854110 01 11 01112221110110 011
Q ss_pred cEEEEEeecc----ccC------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHHHHHHhhc
Q 039334 158 LKIIMTRRTT----KQS------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMIAKALKKV 226 (782)
Q Consensus 158 s~IivTTr~~----~~~------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 226 (782)
+=|++-+... ... +..++|++++.+|..+|..+. +.. -.++..++|....+|.|.-+..++..+...
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~-~~~-~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY-GLE-FSQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh-hcc-CCHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1222222111 111 167899999999999998872 111 122238899999999999999999998764
No 168
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.42 E-value=0.00068 Score=68.94 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=101.0
Q ss_pred hhhhHHHHHHHhhcCCce---EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCC
Q 039334 7 ASSQKEKISELLKEDGRS---TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCES 83 (782)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~---vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~ 83 (782)
.+.+...+..++.+...+ .|-|.|.+|.|||.+.+.+++... -..+|+++-.-|..+.++..|+.+.....
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~~~~d 84 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKSQLAD 84 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHhccCC
Confidence 347788888888665443 357899999999999999999831 12379999999999999999999986322
Q ss_pred CchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEE
Q 039334 84 PNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMT 163 (782)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivT 163 (782)
.++...+. ......+....+.+... ..-+++.++||||+++.-...+-.+ -..+-.+-.+++. + .-+|++
T Consensus 85 ~dg~~~~~----~~en~~d~i~~l~q~~~-~t~~d~~~~liLDnad~lrD~~a~l-l~~l~~L~el~~~---~-~i~iil 154 (438)
T KOG2543|consen 85 KDGDKVEG----DAENFSDFIYLLVQWPA-ATNRDQKVFLILDNADALRDMDAIL-LQCLFRLYELLNE---P-TIVIIL 154 (438)
T ss_pred Cchhhhhh----HHHHHHHHHHHHHhhHH-hhccCceEEEEEcCHHhhhccchHH-HHHHHHHHHHhCC---C-ceEEEE
Confidence 22211110 01223333333333210 1113678999999998652111111 1111122222232 2 334444
Q ss_pred eecccc------CC----CeeecCCCCHHHHHHHHHhhhcc
Q 039334 164 RRTTKQ------SG----KVIKFPSMSTEESLNLLKNEFSD 194 (782)
Q Consensus 164 Tr~~~~------~~----~~~~l~~L~~~~~~~Lf~~~~~~ 194 (782)
+-..-. .+ .++..+.-+.+|...++.+..++
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~ 195 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG 195 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc
Confidence 444311 11 45556677888999998885543
No 169
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.00032 Score=70.28 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..-+.++|++|+|||+||.++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 446899999999999999999876
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=97.40 E-value=0.0015 Score=66.96 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=67.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhh
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTE 104 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (782)
.+.++|++|+||||+|+.+++.. ...+.-...-|+.++.. ++ ......+. .....
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~----~l----~~~~~g~~----------------~~~~~ 115 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRD----DL----VGQYIGHT----------------APKTK 115 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHH----HH----HHHHhccc----------------hHHHH
Confidence 47889999999999999997751 11111011124444321 22 22111110 00011
Q ss_pred hhhhchhhhccccCceeEEEecCCCCC--ccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc-------------c
Q 039334 105 GEMATHQEENKEDKKNYHLVLDGEGIN--EMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-------------Q 169 (782)
Q Consensus 105 ~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-------------~ 169 (782)
..+.+. .+ -+|+||++..- ..++.++-......+...+... ..+-+||+++.... .
T Consensus 116 ~~l~~a------~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~-~~~~~vI~ag~~~~~~~~~~~np~L~sR 186 (287)
T CHL00181 116 EVLKKA------MG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ-RDDLVVIFAGYKDRMDKFYESNPGLSSR 186 (287)
T ss_pred HHHHHc------cC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhcC-CCCEEEEEeCCcHHHHHHHhcCHHHHHh
Confidence 122222 22 48999998742 0011122233344444433322 23366777765321 1
Q ss_pred CCCeeecCCCCHHHHHHHHHhh
Q 039334 170 SGKVIKFPSMSTEESLNLLKNE 191 (782)
Q Consensus 170 ~~~~~~l~~L~~~~~~~Lf~~~ 191 (782)
....+.+++++.+|..+++.+.
T Consensus 187 ~~~~i~F~~~t~~el~~I~~~~ 208 (287)
T CHL00181 187 IANHVDFPDYTPEELLQIAKIM 208 (287)
T ss_pred CCceEEcCCcCHHHHHHHHHHH
Confidence 1257888999998888888873
No 171
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.00083 Score=67.82 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+.|+|++|+|||+||.++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 346779999999999999999776
No 172
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.38 E-value=0.0039 Score=63.98 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=39.9
Q ss_pred eEEEecCCCCCc--cchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc------cC-------CCeeecCCCCHHHHH
Q 039334 121 YHLVLDGEGINE--MDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK------QS-------GKVIKFPSMSTEESL 185 (782)
Q Consensus 121 ~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~------~~-------~~~~~l~~L~~~~~~ 185 (782)
-+|+||++..-. ..+.++-...+..+...+... ..+-+||.++.... .. ...+.+++++.+|-.
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcC-CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 588999987320 011111223344444433322 23456777664321 11 367899999999999
Q ss_pred HHHHhhh
Q 039334 186 NLLKNEF 192 (782)
Q Consensus 186 ~Lf~~~~ 192 (782)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9988843
No 173
>PRK12377 putative replication protein; Provisional
Probab=97.38 E-value=0.00037 Score=69.27 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
...+.++|.+|+|||.||.++++. ... ....++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~-l~~--~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR-LLA--KGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHH--cCCCeEEEEH
Confidence 457899999999999999999998 332 2334567765
No 174
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.38 E-value=0.0016 Score=65.48 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=108.9
Q ss_pred hhhhh--hhHHHHHHHhhc---CCceEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHH
Q 039334 4 ERVAS--SQKEKISELLKE---DGRSTIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAI 75 (782)
Q Consensus 4 ~~~~~--~~~~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i 75 (782)
|||.. +..+++..++.. .+.+-+.|+|.+|.|||++++++.+...... ..--.++.|.....++...+...|
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 44542 334445554433 3445689999999999999999987633211 111146677778889999999999
Q ss_pred HHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCC
Q 039334 76 SRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQP 155 (782)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~ 155 (782)
+.+++.+....+. .........+.+ -.-+--+||+|.+.+.=.+.-.. -.++++++..-++
T Consensus 117 L~~lgaP~~~~~~-----------~~~~~~~~~~ll----r~~~vrmLIIDE~H~lLaGs~~~----qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 117 LEALGAPYRPRDR-----------VAKLEQQVLRLL----RRLGVRMLIIDEFHNLLAGSYRK----QREFLNALKFLGN 177 (302)
T ss_pred HHHhCcccCCCCC-----------HHHHHHHHHHHH----HHcCCcEEEeechHHHhcccHHH----HHHHHHHHHHHhh
Confidence 9999997643211 111122222221 02233478899987520111111 1222222221111
Q ss_pred CC--cEEEEEeecccc--------CC--CeeecCCCCHH-HHHHHHHh-h--hc----cccchhHHHHHHHHhcCCcHHH
Q 039334 156 DH--LKIIMTRRTTKQ--------SG--KVIKFPSMSTE-ESLNLLKN-E--FS----DHQVSGELFEFIAEKGRRSPAA 215 (782)
Q Consensus 156 ~g--s~IivTTr~~~~--------~~--~~~~l~~L~~~-~~~~Lf~~-~--~~----~~~~~~~~~~~i~~~c~glPla 215 (782)
.- +-|.+-|++.-. +. .++.++.-..+ |...|+.. . ++ +.-..++++..|...++|+.--
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 11 677887877611 11 56666655544 55555554 1 22 1223457899999999999744
Q ss_pred H
Q 039334 216 I 216 (782)
Q Consensus 216 i 216 (782)
+
T Consensus 258 l 258 (302)
T PF05621_consen 258 L 258 (302)
T ss_pred H
Confidence 3
No 175
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.38 E-value=0.0049 Score=62.60 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=34.7
Q ss_pred hHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHH
Q 039334 10 QKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLE 72 (782)
Q Consensus 10 ~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 72 (782)
-++++..++..+ . -|.+.|++|+|||++|+.+++. .+. ..+.++.+...+..+++
T Consensus 10 l~~~~l~~l~~g-~-~vLL~G~~GtGKT~lA~~la~~---lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG-Y-PVHLRGPAGTGKTTLAMHVARK---RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC-C-eEEEEcCCCCCHHHHHHHHHHH---hCC---CEEEEeCCccCCHHHHh
Confidence 344555555443 3 4558999999999999999975 222 23456665554444443
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.36 E-value=0.0007 Score=64.75 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=33.8
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEE
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWIN 61 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 61 (782)
++....++.|. ...++.+.|++|+|||.||.+..-+ .+..+.|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~-~v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALE-LVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHH-HHHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHH-HHHhCCCcEEEEEe
Confidence 34444555555 4568999999999999999999888 44457788877754
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0065 Score=63.88 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=35.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-.+..++.+.+.+..++.+ ..-++|+.|+||||+|+.+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~ 51 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKS 51 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35664546677888888777766 4588999999999999998776
No 178
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.0069 Score=58.69 Aligned_cols=180 Identities=17% Similarity=0.179 Sum_probs=103.5
Q ss_pred hcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc-ccccchhHHHHHHHHhhccCCCchhhhhhhhhhhh
Q 039334 19 KEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK-AEKYSSNLLEEAISRQALCESPNIEEWEEQEEEED 97 (782)
Q Consensus 19 ~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 97 (782)
..++..++.++|.-|+|||.++++.... . .-+.++-|.+ ....+...+...++-++.... .| ...
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s---~--~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p----~~-----~~~ 112 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLAS---L--NEDQVAVVVIDKPTLSDATLLEAIVADLESQP----KV-----NVN 112 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHh---c--CCCceEEEEecCcchhHHHHHHHHHHHhccCc----cc-----hhH
Confidence 3456779999999999999999965554 1 1233333343 355677888888888877621 00 111
Q ss_pred cccchhhhhhhchhhhccccCce-eEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc---------
Q 039334 98 EDGKKTEGEMATHQEENKEDKKN-YHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT--------- 167 (782)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~~kr-~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~--------- 167 (782)
...++....+.+. ..+++| ..+++||....+.+.-+..+.-|+-.. . ...--+|+..-.-+
T Consensus 113 ~~~e~~~~~L~al----~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~----~-~~~~l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 113 AVLEQIDRELAAL----VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEE----D-SSKLLSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred HHHHHHHHHHHHH----HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcc----c-ccCceeeeecCCcccchhhchHH
Confidence 1223333333333 246787 899999988653333333222222211 0 00112244433222
Q ss_pred --c---cCCCeeecCCCCHHHHHHHHHhhhccccc-----hhHHHHHHHHhcCCcHHHHHHHHH
Q 039334 168 --K---QSGKVIKFPSMSTEESLNLLKNEFSDHQV-----SGELFEFIAEKGRRSPAAITMIAK 221 (782)
Q Consensus 168 --~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-----~~~~~~~i~~~c~glPlai~~~~~ 221 (782)
+ .....|++.|++.+++....+..++.... ..+....|..+..|.|.++.-++.
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 0 01133899999999877776664433221 235678899999999998865553
No 179
>PRK08181 transposase; Validated
Probab=97.31 E-value=0.00053 Score=69.07 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=28.9
Q ss_pred HHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 16 ELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 16 ~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
+|+.. ..-+.++|++|+|||.||.++.+. .+. ....++++++
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~-a~~--~g~~v~f~~~ 142 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLA-LIE--NGWRVLFTRT 142 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHH-HHH--cCCceeeeeH
Confidence 45442 345899999999999999999886 222 2234466653
No 180
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.30 E-value=0.0011 Score=62.72 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
..-+.++|..|+|||.||.++.+. .+.+ -..+.++++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~-~~~~--g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE-AIRK--GYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH-HHHT--T--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH-hccC--CcceeEeec
Confidence 346899999999999999999987 3322 234577754
No 181
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.30 E-value=0.0022 Score=62.32 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=34.0
Q ss_pred chhhhhhhhHHHHHHHh----hcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELL----KEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l----~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|.+|++ .+++.|++=. ......-+-+||..|+|||++++++.+.
T Consensus 28 ~L~Gie-~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 28 DLIGIE-RQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HhcCHH-HHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 467888 7777776644 2234456788999999999999999987
No 182
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.28 E-value=0.00046 Score=71.31 Aligned_cols=223 Identities=15% Similarity=0.127 Sum_probs=139.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
.+-+.++|.|||||||++-.+..- + ...-+.++.|...+-.|...+.-.+...+..... ..+.
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~~-~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--------------~g~~ 76 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAHA-A--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--------------PGDS 76 (414)
T ss_pred hheeeeeccCccceehhhhhhHhH-h--hhcccceeeeeccccCchhHhHHHHHhhcccccc--------------cchH
Confidence 567899999999999999999881 2 2334566677766655655555555554544221 1111
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccchhHH-HHhhhhhhhhcCCCCCCCCcEEEEEeecccc--CCCeeecCCC
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMDENEL-VKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ--SGKVIKFPSM 179 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~-~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~--~~~~~~l~~L 179 (782)
....+... ..++|.++|+||-... -+. ....|.-+. +++.-.|+.|+|+.-- .+..+.+++|
T Consensus 77 ~~~~~~~~-----~~~rr~llvldncehl----~~~~a~~i~all~------~~~~~~~~atsre~~l~~ge~~~~~~~L 141 (414)
T COG3903 77 AVDTLVRR-----IGDRRALLVLDNCEHL----LDACAALIVALLG------ACPRLAILATSREAILVAGEVHRRVPSL 141 (414)
T ss_pred HHHHHHHH-----HhhhhHHHHhcCcHHH----HHHHHHHHHHHHc------cchhhhhHHHhHhhhcccccccccCCcc
Confidence 22233333 4789999999985421 111 111222222 2445779999999833 2367778888
Q ss_pred CHH-HHHHHHHh-hhcc------ccchhHHHHHHHHhcCCcHHHHHHHHHHHhhccccchhHHHHHHhh-------c-cc
Q 039334 180 STE-ESLNLLKN-EFSD------HQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQRDSRDLASAIGK-------A-AY 243 (782)
Q Consensus 180 ~~~-~~~~Lf~~-~~~~------~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~~~~~~~l~~-------~-~~ 243 (782)
+.. ++.++|.. +..- .+.....+..|.++.+|.|++|.-.+...+.-... .+...+.. . ..
T Consensus 142 ~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~---~i~~~L~drf~ll~~~~r~ 218 (414)
T COG3903 142 SLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPD---EIAAGLRDRFRLLTGGARL 218 (414)
T ss_pred ccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHH---HHHHHHhhHHHHHhccccc
Confidence 875 78888876 3211 22333568899999999999999988887665443 22222221 1 00
Q ss_pred cCCCCcccchhhhcccCCCCchhhhhhhhhhhccccCC
Q 039334 244 YEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKY 281 (782)
Q Consensus 244 ~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~ 281 (782)
-..........+.+||.-|... .+.-|--++.|.-.+
T Consensus 219 a~~~~qtl~asl~ws~~lLtgw-e~~~~~rLa~~~g~f 255 (414)
T COG3903 219 AVLRQQTLRASLDWSYALLTGW-ERALFGRLAVFVGGF 255 (414)
T ss_pred chhHHHhccchhhhhhHhhhhH-HHHHhcchhhhhhhh
Confidence 0122345677889999999986 888888888887654
No 183
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.28 E-value=0.0079 Score=66.11 Aligned_cols=152 Identities=11% Similarity=0.116 Sum_probs=78.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
+-|-++|++|+|||.+|+++.+. .+.+| +-+..++-+ ....++ ....+
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e---~~~~~---~~l~~~~l~----------~~~vGe----------------se~~l 307 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIAND---WQLPL---LRLDVGKLF----------GGIVGE----------------SESRM 307 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHH---hCCCE---EEEEhHHhc----------ccccCh----------------HHHHH
Confidence 35789999999999999999997 22222 223322111 111110 00111
Q ss_pred hhhhhchhhhccccCceeEEEecCCCCC-----ccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccccC--------
Q 039334 104 EGEMATHQEENKEDKKNYHLVLDGEGIN-----EMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQS-------- 170 (782)
Q Consensus 104 ~~~~~~~~~~~~l~~kr~LlVlDdv~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~~-------- 170 (782)
...+... -...+++|++|+++.. ..++-.........+...+-.. ..+--||.||......
T Consensus 308 ~~~f~~A-----~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~vIaTTN~~~~Ld~allR~G 381 (489)
T CHL00195 308 RQMIRIA-----EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-KSPVFVVATANNIDLLPLEILRKG 381 (489)
T ss_pred HHHHHHH-----HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-CCceEEEEecCChhhCCHHHhCCC
Confidence 1111111 2457899999998732 0011111112222333222211 1234466677766311
Q ss_pred --CCeeecCCCCHHHHHHHHHhhhcccc-c--hhHHHHHHHHhcCCcH
Q 039334 171 --GKVIKFPSMSTEESLNLLKNEFSDHQ-V--SGELFEFIAEKGRRSP 213 (782)
Q Consensus 171 --~~~~~l~~L~~~~~~~Lf~~~~~~~~-~--~~~~~~~i~~~c~glP 213 (782)
...+.++..+.++-.++|+..+.... . ...-...+++.+.|.-
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 25677888888888888887443321 1 1223567777777764
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0055 Score=64.72 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
-..+-|||..|.|||.|++++.+.... .......+.++. .+...+.+..+.. .
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~s----e~f~~~~v~a~~~--------------------~ 165 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTS----EDFTNDFVKALRD--------------------N 165 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccH----HHHHHHHHHHHHh--------------------h
Confidence 458999999999999999999998222 223222333322 2222223322221 0
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecccc-------------
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ------------- 169 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~------------- 169 (782)
-.+.+++. . .--++++||++.- ...+.....+-++.+.+.. .|-.||+|++....
T Consensus 166 ~~~~Fk~~-----y--~~dlllIDDiq~l--~gk~~~qeefFh~FN~l~~---~~kqIvltsdr~P~~l~~~~~rL~SR~ 233 (408)
T COG0593 166 EMEKFKEK-----Y--SLDLLLIDDIQFL--AGKERTQEEFFHTFNALLE---NGKQIVLTSDRPPKELNGLEDRLRSRL 233 (408)
T ss_pred hHHHHHHh-----h--ccCeeeechHhHh--cCChhHHHHHHHHHHHHHh---cCCEEEEEcCCCchhhccccHHHHHHH
Confidence 12333333 2 3348899999864 2222223344444444443 34589999977521
Q ss_pred -CCCeeecCCCCHHHHHHHHHh-h-hccccchhHHHHHHHHhcCCc
Q 039334 170 -SGKVIKFPSMSTEESLNLLKN-E-FSDHQVSGELFEFIAEKGRRS 212 (782)
Q Consensus 170 -~~~~~~l~~L~~~~~~~Lf~~-~-~~~~~~~~~~~~~i~~~c~gl 212 (782)
.+-.+++.+++.+.-..++.+ + ..+-.-++++..-|++.....
T Consensus 234 ~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~n 279 (408)
T COG0593 234 EWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRN 279 (408)
T ss_pred hceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 127889999999998888887 3 233344556666666655443
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.24 E-value=0.0037 Score=73.55 Aligned_cols=174 Identities=13% Similarity=0.180 Sum_probs=90.9
Q ss_pred chhhhhhhhHHHHHHHhh---c----------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E----------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~----------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
|+.|.+ +.++++.+.+. . ...+-|.++|++|+|||++|+++++. .+..| +.+..+
T Consensus 454 di~g~~-~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e---~~~~f---i~v~~~----- 521 (733)
T TIGR01243 454 DIGGLE-EVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE---SGANF---IAVRGP----- 521 (733)
T ss_pred hcccHH-HHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh---cCCCE---EEEehH-----
Confidence 456666 66666666552 1 11234788999999999999999997 32333 233221
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCC--ccc---hhHHHHhhh
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN--EMD---ENELVKEAS 143 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~---~~~~~~~~~ 143 (782)
+++...-+++ ...+...+... -+..+++|++|+++.- .++ .........
T Consensus 522 -----~l~~~~vGes----------------e~~i~~~f~~A-----~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~ 575 (733)
T TIGR01243 522 -----EILSKWVGES----------------EKAIREIFRKA-----RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIV 575 (733)
T ss_pred -----HHhhcccCcH----------------HHHHHHHHHHH-----HhcCCEEEEEEChhhhhccCCCCCCccHHHHHH
Confidence 1111111100 01111222222 2456789999998632 000 111112223
Q ss_pred hhhhhcCCCC-CCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccchh-HHHHHHHHhcCC
Q 039334 144 SDFKNLLPSV-QPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVSG-ELFEFIAEKGRR 211 (782)
Q Consensus 144 ~~~~~~~p~~-~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~i~~~c~g 211 (782)
..++..+... ...+--||.||..+... ...+.++..+.++-.++|+.........+ .-...+++.+.|
T Consensus 576 ~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g 655 (733)
T TIGR01243 576 NQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEG 655 (733)
T ss_pred HHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCC
Confidence 3333222211 12335667777665221 26778888888888889876433322111 125678888887
Q ss_pred cH
Q 039334 212 SP 213 (782)
Q Consensus 212 lP 213 (782)
.-
T Consensus 656 ~s 657 (733)
T TIGR01243 656 YT 657 (733)
T ss_pred CC
Confidence 64
No 186
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.0013 Score=64.36 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=28.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
.++|+|..|+|||||++.+..+ ....|..+.+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~---~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY---LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh---hcccCCEEEEEec
Confidence 6889999999999999999987 3456766666643
No 187
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.016 Score=60.00 Aligned_cols=183 Identities=9% Similarity=0.064 Sum_probs=94.2
Q ss_pred hHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhh
Q 039334 10 QKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 10 ~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
....+.+.+..++.+ -.-+.|+.|+||+++|+.+.+.-.... ... ..++..-...+.+...-. +|.-.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~-~~~-------~~~Cg~C~sC~~~~~g~H---PD~~~ 78 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT-PQG-------DQPCGQCHSCHLFQAGNH---PDFHI 78 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC-CCC-------CCCCCCCHHHHHHhcCCC---CCEEE
Confidence 456677777777655 566899999999999999887633321 100 011122222222221110 00000
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK 168 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~ 168 (782)
-.+.+ ......+++.+ +.+.+......+++-.+|+|+++..+. .....++..+-.+ +++..+|++|.++.
T Consensus 79 i~p~~-~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~-------~AaNaLLKtLEEP-p~~~~fiL~t~~~~ 148 (325)
T PRK06871 79 LEPID-NKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTE-------AAANALLKTLEEP-RPNTYFLLQADLSA 148 (325)
T ss_pred Ecccc-CCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCH-------HHHHHHHHHhcCC-CCCeEEEEEECChH
Confidence 00000 00011111111 111111111246667888999986522 2223333222222 24588888888762
Q ss_pred -cC------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHH
Q 039334 169 -QS------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 169 -~~------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai 216 (782)
+- ...+.+.+++.++..+.+.+..+. ..+.+...+..++|.|..+
T Consensus 149 ~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 149 ALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---EISEILTALRINYGRPLLA 200 (325)
T ss_pred hCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc---ChHHHHHHHHHcCCCHHHH
Confidence 22 268889999999998888763222 1223566788899999643
No 188
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00066 Score=71.68 Aligned_cols=48 Identities=31% Similarity=0.496 Sum_probs=37.9
Q ss_pred chhhhhh--hhHHHHHHHhhc--------CCce-EEEEEcCCCchhHHHHHHHhhcccc
Q 039334 2 DSERVAS--SQKEKISELLKE--------DGRS-TIILIGDPGLWKTWLEREISKNKVI 49 (782)
Q Consensus 2 ~~~~~~~--~~~~~l~~~l~~--------~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~ 49 (782)
||-|.|+ +|+++|+.+|.+ +..+ =|-++|++|.|||-||++++....|
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 6677875 678888888865 2333 4778999999999999999998444
No 189
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.17 E-value=0.0024 Score=74.86 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=38.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|.+ ++.++++..|......-+.++|++|+|||++|+.+++.
T Consensus 183 ~~igr~-~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 183 PLIGRE-DELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred cccCcH-HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 578888 88889998887766667789999999999999999987
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.17 E-value=0.0041 Score=73.16 Aligned_cols=44 Identities=30% Similarity=0.484 Sum_probs=33.7
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+.|.+ +.++++.+++.- ...+-|.++|++|+|||+||+++++.
T Consensus 179 di~G~~-~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 179 DIGGLK-EAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HhcCHH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 466777 778787777621 12345789999999999999999987
No 191
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.16 E-value=0.008 Score=55.95 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..+.+.+.+..++.+ .+-+.|+.|+||+++|..+.+.
T Consensus 4 ~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ 42 (162)
T PF13177_consen 4 EIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARA 42 (162)
T ss_dssp HHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 4567777777777766 5789999999999999998776
No 192
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.014 Score=57.39 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=45.4
Q ss_pred cEEEEEeeccccCC-------CeeecCCCCHHHHHHHHHh-hhc-cccchhHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 039334 158 LKIIMTRRTTKQSG-------KVIKFPSMSTEESLNLLKN-EFS-DHQVSGELFEFIAEKGRRSPAAITMIAKALKK 225 (782)
Q Consensus 158 s~IivTTr~~~~~~-------~~~~l~~L~~~~~~~Lf~~-~~~-~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 225 (782)
+-|=-|||.-+... .+.+++.-+.+|-.+...+ +-- +-+..++.+.+|+++.+|-|-- ..++|+.
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRI---AnRLLrR 226 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRI---ANRLLRR 226 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHH---HHHHHHH
Confidence 44667888775543 6778888889999998888 321 2233456789999999999953 3445543
No 193
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.12 E-value=0.0022 Score=66.17 Aligned_cols=106 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
..-+.++|..|+|||.||.++++. ... .. ..+.+++++ +++.++....... .
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~-l~~-~g-~~v~~~~~~------~l~~~lk~~~~~~-------------------~ 207 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE-LAK-KG-VSSTLLHFP------EFIRELKNSISDG-------------------S 207 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHH-cC-CCEEEEEHH------HHHHHHHHHHhcC-------------------c
Confidence 346889999999999999999998 332 22 335667653 3444444333220 1
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT 167 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~ 167 (782)
..+.+..+ .+--||||||+......+|... ..+..+.+ .--..+-.+|+||.-.
T Consensus 208 ~~~~l~~l-------~~~dlLiIDDiG~e~~s~~~~~-~ll~~Il~---~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 208 VKEKIDAV-------KEAPVLMLDDIGAEQMSSWVRD-EVLGVILQ---YRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHHHh-------cCCCEEEEecCCCccccHHHHH-HHHHHHHH---HHHHCCCeEEEECCCC
Confidence 12223333 3457999999998766777531 11121210 0001335688898854
No 194
>PRK06921 hypothetical protein; Provisional
Probab=97.08 E-value=0.003 Score=63.94 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
....+.++|..|+|||.||.++++. ...+. ...+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~-l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE-LMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH-Hhhhc-CceEEEEEH
Confidence 3457899999999999999999997 33221 234567764
No 195
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.0035 Score=60.73 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 14 ISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 14 l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++-+...+...|.|+|.+|+||||||..+.+.
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 444445555567889999999999999999886
No 196
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.03 E-value=0.0019 Score=67.28 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=63.1
Q ss_pred HHHHHHhhc-CCceEEEEEcCCCchhHHHHHHHhhcccccccccce-EEEEEcccc-cchhHHHHHHHHhhccCCCchhh
Q 039334 12 EKISELLKE-DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYT-TLWINKAEK-YSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 12 ~~l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
.++++.+.- +.-..+.|+|.+|+|||||++.+.+. .. .++-+. ++|+.+.+. -.+.++.+.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~-i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAA-VA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHH-HH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 345555533 22346799999999999999999887 22 123344 477777544 46788888888766653211100
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
.. ..........+.++ +.-++++.+||+|++-
T Consensus 199 --~~----~~~v~~~~~~~Ae~---f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 --DE----HIRVAELVLERAKR---LVEQGKDVVILLDSLT 230 (380)
T ss_pred --HH----HHHHHHHHHHHHHH---HHHcCCCEEEEEeCcH
Confidence 00 01111122222222 2236999999999976
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.03 E-value=0.0026 Score=57.74 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=28.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
.++.|+|++|+||||+++.+++. .......++.+..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~---~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE---LGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc---cCCCCCCEEEECCEEcc
Confidence 57899999999999999999998 22221235666654443
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.029 Score=58.09 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=91.9
Q ss_pred hhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchh
Q 039334 9 SQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIE 87 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (782)
+..+.+.+.+..++.+ .+-+.|+.|+||+++|+.+.+.-...... + .++..-...+.+.... ++|.-
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~--------~~Cg~C~sC~~~~~g~---HPD~~ 77 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-S--------EACGFCHSCELMQSGN---HPDLH 77 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-C--------CCCCCCHHHHHHHcCC---CCCEE
Confidence 4556777777777655 57899999999999999987763332100 0 0111111111111100 00000
Q ss_pred hhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc
Q 039334 88 EWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT 167 (782)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~ 167 (782)
.-.+.........+++. .+.+.+......+++-.+|+|+++..+.. ..+.++..+-.+ +.++.+|++|.+.
T Consensus 78 ~i~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------AaNaLLKtLEEP-p~~t~fiL~t~~~ 148 (319)
T PRK06090 78 VIKPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNES-------ASNALLKTLEEP-APNCLFLLVTHNQ 148 (319)
T ss_pred EEecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHH-------HHHHHHHHhcCC-CCCeEEEEEECCh
Confidence 00000000001111111 11111000002455568888998865222 233333222222 2457888888776
Q ss_pred c-cC------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHH
Q 039334 168 K-QS------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 168 ~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~ 217 (782)
. .- ...+.+.+++.+++.+.+.+. +.. ....++..++|.|+.+.
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~~-----~~~~~l~l~~G~p~~A~ 199 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GIT-----VPAYALKLNMGSPLKTL 199 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CCc-----hHHHHHHHcCCCHHHHH
Confidence 3 21 267889999999998887652 111 23567889999998754
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0015 Score=68.01 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
..-+.++|..|+|||.||.++++. ...+ -..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~-l~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKE-LLDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH-HHHC--CCeEEEEEH
Confidence 367999999999999999999998 3322 235567764
No 200
>PRK10536 hypothetical protein; Provisional
Probab=96.99 E-value=0.0026 Score=62.67 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=28.8
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
......+.++.+. ..+.++|++|+|||+||.++..+
T Consensus 62 ~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 62 EAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 4455666666553 48999999999999999998886
No 201
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.96 E-value=0.0028 Score=75.22 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=38.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ ++.++++..|......-+.++|++|+|||++|+.+.+.
T Consensus 179 ~vigr~-~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 179 PVIGRD-EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred cCCCCH-HHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHH
Confidence 478888 78999999887776667779999999999999999987
No 202
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.94 E-value=0.002 Score=76.39 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=38.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|.+ ++.++++.+|.....+-+.++|++|+|||++|+.+++.
T Consensus 180 ~~igr~-~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 180 PVIGRE-KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCcH-HHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHH
Confidence 467888 99999999997766666789999999999999999887
No 203
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.032 Score=58.50 Aligned_cols=185 Identities=10% Similarity=0.054 Sum_probs=93.4
Q ss_pred hhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchh
Q 039334 9 SQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIE 87 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (782)
..-+++.+.+..++.+ -+-+.|+.|+||+++|.++.+.-.... .-+. .++..-.-.+.+.... ++|.-
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~-~~~~-------~~Cg~C~sC~~~~~g~---HPD~~ 77 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ-PQGH-------KSCGHCRGCQLMQAGT---HPDYY 77 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC-CCCC-------CCCCCCHHHHHHHcCC---CCCEE
Confidence 3456777777777765 566899999999999999777633311 0000 0111111111111100 00000
Q ss_pred hhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc
Q 039334 88 EWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT 167 (782)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~ 167 (782)
.-.+.........+++.+.. +.+......+++-.+|+|+++..+.. .-+.++..+-.+ ++++.+|++|.+.
T Consensus 78 ~i~p~~~~~~I~idqiR~l~-~~~~~~~~~g~~kV~iI~~ae~m~~~-------AaNaLLKtLEEP-p~~t~fiL~t~~~ 148 (334)
T PRK07993 78 TLTPEKGKSSLGVDAVREVT-EKLYEHARLGGAKVVWLPDAALLTDA-------AANALLKTLEEP-PENTWFFLACREP 148 (334)
T ss_pred EEecccccccCCHHHHHHHH-HHHhhccccCCceEEEEcchHhhCHH-------HHHHHHHHhcCC-CCCeEEEEEECCh
Confidence 00000000001111111111 11000012467778999998865222 222222222222 3458888888876
Q ss_pred c-cC------CCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHH
Q 039334 168 K-QS------GKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 168 ~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai 216 (782)
. +- ...+.+++++.+++.+.+.+..+ ..++.+..++..++|.|..+
T Consensus 149 ~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 149 ARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred hhChHHHHhccccccCCCCCHHHHHHHHHHccC---CCHHHHHHHHHHcCCCHHHH
Confidence 3 21 15678999999998887765322 22334678899999999643
No 204
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.93 E-value=4.9e-05 Score=65.50 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=50.5
Q ss_pred ceEEEecCCCCCCCCcc-----CCCCccEEEEecCCCCCCCccc-cCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEE
Q 039334 420 LQVLAIFKPTFKSLMSS-----SFERLTVLVLRNCDMLEDITGI-KELKTLSVLEISGASSLKSNPDELFDGMAQLQSLN 493 (782)
Q Consensus 420 L~~L~l~~~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~ 493 (782)
+..+++++|.+..++.. ...+|...+|++|.+...++.| ..++.++.|++.+| .+..+|.++ ..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~-Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEEL-AAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHH-hhhHHhhhcc
Confidence 34445555554433332 3345555555555555444443 23345555555555 255555553 5555555555
Q ss_pred ccCCCCCCCCC-CCCCCCCcEEEccCCC
Q 039334 494 LSRCPMKSLPS-LPKLTKLRFLILRQCS 520 (782)
Q Consensus 494 l~~~~l~~lp~-l~~l~~L~~L~l~~~~ 520 (782)
++.|++...|. +..+.+|-.|+..++.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCc
Confidence 55555555555 4445555555555443
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.93 E-value=0.00091 Score=69.28 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=43.9
Q ss_pred chhhhhhhhHHHHHHHhhc------CCceEEEEEcCCCchhHHHHHHHhhccccc----ccccceEEEE
Q 039334 2 DSERVASSQKEKISELLKE------DGRSTIILIGDPGLWKTWLEREISKNKVIA----SSSCYTTLWI 60 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~----~~~f~~~~wv 60 (782)
|+.|.+ +.++++++++.. ...+++.++|++|+||||||+.+.+..... .+.|...-|.
T Consensus 52 ~~~G~~-~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 52 DFFGME-EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred hccCcH-HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 578888 889999999943 235688999999999999999998884331 1345555663
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.0079 Score=59.72 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
...+.++|.+|+|||+||.++++. ...+ -..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~-l~~~--g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE-LLLR--GKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-HHhc--CCeEEEEEH
Confidence 346889999999999999999998 3322 234456643
No 207
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.92 E-value=0.0085 Score=57.26 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred chhhhhhhhHHHHHHHh----hcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHH
Q 039334 2 DSERVASSQKEKISELL----KEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISR 77 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l----~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 77 (782)
|++|++ .+++.+++=. ..-...-|-+||.-|+||+.|++++.+. .. ...-..+-|+-.+-.+ +..|+.
T Consensus 61 ~l~Gvd-~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e-~~--~~glrLVEV~k~dl~~----Lp~l~~ 132 (287)
T COG2607 61 DLVGVD-RQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNE-YA--DEGLRLVEVDKEDLAT----LPDLVE 132 (287)
T ss_pred HHhCch-HHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHH-HH--hcCCeEEEEcHHHHhh----HHHHHH
Confidence 578998 7777776644 2234557889999999999999999987 22 2222234443222222 223333
Q ss_pred hhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCC--CC
Q 039334 78 QALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSV--QP 155 (782)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~--~~ 155 (782)
++.. +..||+|..||..-+ ++. ..++.++.++--. +.
T Consensus 133 ~Lr~-----------------------------------~~~kFIlFcDDLSFe--~gd----~~yK~LKs~LeG~ve~r 171 (287)
T COG2607 133 LLRA-----------------------------------RPEKFILFCDDLSFE--EGD----DAYKALKSALEGGVEGR 171 (287)
T ss_pred HHhc-----------------------------------CCceEEEEecCCCCC--CCc----hHHHHHHHHhcCCcccC
Confidence 3322 588999999998754 211 2344444333211 23
Q ss_pred CCcEEEEEeecc
Q 039334 156 DHLKIIMTRRTT 167 (782)
Q Consensus 156 ~gs~IivTTr~~ 167 (782)
+...++..|.++
T Consensus 172 P~NVl~YATSNR 183 (287)
T COG2607 172 PANVLFYATSNR 183 (287)
T ss_pred CCeEEEEEecCC
Confidence 446777777776
No 208
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.91 E-value=0.013 Score=61.69 Aligned_cols=109 Identities=12% Similarity=0.148 Sum_probs=72.4
Q ss_pred CceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccccCC-----------CeeecCCCCHHHHHH
Q 039334 118 KKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQSG-----------KVIKFPSMSTEESLN 186 (782)
Q Consensus 118 ~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~~~-----------~~~~l~~L~~~~~~~ 186 (782)
.+|-+||||+.-... ...+.+...+.++...+-. .+=-+||++|-+....+ +.+.|...+.+-|.+
T Consensus 147 e~~PVVVIdnF~~k~-~~~~~iy~~laeWAa~Lv~--~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 147 ERRPVVVIDNFLHKA-EENDFIYDKLAEWAASLVQ--NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred ccCCEEEEcchhccC-cccchHHHHHHHHHHHHHh--cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 446799999987542 2234444444444433332 23388999998873322 778899999999999
Q ss_pred HHHhhhccccc----------------------hhHHHHHHHHhcCCcHHHHHHHHHHHhhcccc
Q 039334 187 LLKNEFSDHQV----------------------SGELFEFIAEKGRRSPAAITMIAKALKKVVQR 229 (782)
Q Consensus 187 Lf~~~~~~~~~----------------------~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~ 229 (782)
.....++.... ..+-....++..||=-.-+..+++.++....+
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 88885543210 11233567788999999999999999886655
No 209
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.89 E-value=0.0033 Score=74.89 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=37.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.+ ++.++++..|......-+.++|++|+|||++|+.+.++
T Consensus 174 ~~igr~-~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 174 PVIGRD-EEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred cCCCcH-HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 368888 78999999887766666779999999999999999887
No 210
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.0015 Score=61.56 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=25.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEE
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLW 59 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~w 59 (782)
.|.|+|++|+||||||+.+.+......-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998763322234555555
No 211
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.88 E-value=0.006 Score=58.87 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 7 ASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 7 ~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++.+.+... ..++.++..|.|++|+||||+++.+.+.
T Consensus 3 ~~~Q~~a~~~~-l~~~~~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 3 NEEQREAVRAI-LTSGDRVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp -HHHHHHHHHH-HHCTCSEEEEEESTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HhcCCeEEEEEECCCCCHHHHHHHHHHH
Confidence 43445555444 4455678899999999999999998776
No 212
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0043 Score=62.29 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
+..-+.++|.+|+|||.||.++.+. ..+ .. --+.++++ .++..++...... .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~-l~~-~g-~sv~f~~~------~el~~~Lk~~~~~-------------------~ 155 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE-LLK-AG-ISVLFITA------PDLLSKLKAAFDE-------------------G 155 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH-HHH-cC-CeEEEEEH------HHHHHHHHHHHhc-------------------C
Confidence 4557899999999999999999998 332 22 33466654 3344444433322 1
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCCCccchhH
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENE 137 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~ 137 (782)
....++.+. -.+-=||||||+.....+.|.
T Consensus 156 ~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 156 RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred chHHHHHHH------hhcCCEEEEecccCccCCHHH
Confidence 112222221 133359999999987667765
No 213
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00086 Score=64.94 Aligned_cols=109 Identities=28% Similarity=0.374 Sum_probs=70.6
Q ss_pred CCCCCCCCEEEeecCCCccccc--cccccceeecccc--ccCCCCC-CCCCCCcccEEecccCCCCCCC---CCCCCCCC
Q 039334 654 TTALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNC--LSLTKLP-EMKGLEKLEELRLSGCINLTEL---PNLNDFPK 725 (782)
Q Consensus 654 ~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~--~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l---~~~~~l~~ 725 (782)
...+..|+.|++.+..++++.. .+|+|++|.++.| .....++ -...+|+|++|++++| +++.+ +.+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 4456677777787777775544 6789999999887 3333333 2455699999999988 55543 33677888
Q ss_pred cCEEeccCCCCCCCCh----hhhCCCCCCcccEEeCCCCCCC
Q 039334 726 LDLLDISNTGIREIPD----EILELSRPKIIREVDEETNQAE 763 (782)
Q Consensus 726 L~~L~l~~~~l~~lp~----~~~~l~~L~~L~~l~~~~n~~~ 763 (782)
|..|++.+|..+.+.. .+.-+++|+.|.-=|+..+...
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 8899999997554322 2333566665554444444443
No 214
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.80 E-value=0.008 Score=69.72 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=36.4
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|.+ ++.++++..|......-+.++|++|+|||++|+.+++.
T Consensus 188 liGR~-~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 188 LIGRE-KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCCC-HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 67888 88999999887755555678999999999999999876
No 215
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.75 E-value=0.0089 Score=67.51 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhcC-----CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKED-----GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~~-----~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.++++..|+... ..+++.|+|++|+||||+++.+++.
T Consensus 91 ~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 91 KKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6778888888543 2346999999999999999999987
No 216
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.73 E-value=0.0084 Score=70.76 Aligned_cols=44 Identities=34% Similarity=0.438 Sum_probs=34.8
Q ss_pred chhhhhhhhHHHHHHHhh----c--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK----E--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~----~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+.|.+ +.+++|..++. . ...+++.++|++|+|||++|+.+++.
T Consensus 321 ~~~G~~-~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 321 DHYGLK-KVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hcCChH-HHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456777 77888887762 1 13458999999999999999999998
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.71 E-value=0.0011 Score=58.45 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=21.0
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.68 E-value=0.0036 Score=63.48 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..--+++|+++....|.+.|.+|.|||.||.+..=.
T Consensus 233 Q~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 233 QRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred HHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHH
Confidence 334466778889999999999999999999886544
No 219
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.66 E-value=0.00032 Score=67.66 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=94.1
Q ss_pred CCCccEEEEecCCCCCCC-----ccccCCCCCcEEEeecCCCCCC----CchHH------hcCCCCccEEEccCCCCC-C
Q 039334 438 FERLTVLVLRNCDMLEDI-----TGIKELKTLSVLEISGASSLKS----NPDEL------FDGMAQLQSLNLSRCPMK-S 501 (782)
Q Consensus 438 l~~L~~L~L~~~~~~~~~-----~~l~~l~~L~~L~L~~~~~~~~----lp~~~------~~~l~~L~~L~l~~~~l~-~ 501 (782)
+..+..++|++|.+.... ..|.+-.+|+..+++.- ..+. +++++ +-+|++|+..++++|.+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 344555555555443321 23555666777766653 2222 22221 246788888888888755 2
Q ss_pred CCC-----CCCCCCCcEEEccCCCCCCCCCC--cc-CCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc
Q 039334 502 LPS-----LPKLTKLRFLILRQCSCLEYMPS--LK-ELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 502 lp~-----l~~l~~L~~L~l~~~~~~~~~~~--~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
.|. ++.-+.|.||.+++|..-. +.. ++ .|..|. ........+.|+.+.+..|++..-+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la-------------~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLA-------------YNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHH-------------HHhhhccCCCceEEEeccchhccCc
Confidence 332 6677888888888886322 111 10 000000 0112233455666666665554433
Q ss_pred C------cCCCCcccEEEecCcCCCCC------CCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEE
Q 039334 574 K------FTDLKHLSRILLRGCRKLHI------LPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELY 641 (782)
Q Consensus 574 ~------~~~l~~L~~L~l~~~~~~~~------~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~ 641 (782)
. +..-.+|+.+.+..|..... +-.+..+++|+.|++..|.++-.+...+.. .++.|+ .|++|.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~----al~~W~-~lrEL~ 248 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD----ALCEWN-LLRELR 248 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH----Hhcccc-hhhhcc
Confidence 1 22224555555555433211 112445677888888777776555443331 122222 356666
Q ss_pred ecCC
Q 039334 642 LRKC 645 (782)
Q Consensus 642 l~~~ 645 (782)
+..|
T Consensus 249 lnDC 252 (388)
T COG5238 249 LNDC 252 (388)
T ss_pred ccch
Confidence 6555
No 220
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.66 E-value=0.093 Score=51.45 Aligned_cols=169 Identities=15% Similarity=0.231 Sum_probs=95.5
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcc---cccccccceEEEEEcccc----------c---------
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNK---VIASSSCYTTLWINKAEK----------Y--------- 66 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~---~~~~~~f~~~~wv~~~~~----------~--------- 66 (782)
+....+.+....+..+..-++|++|.||-|.+..+.+.. -+.+-.-+..-|.+-|+. +
T Consensus 20 e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDa 99 (351)
T KOG2035|consen 20 ELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDA 99 (351)
T ss_pred HHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhc
Confidence 556666666665668899999999999999887765551 111222334445443332 1
Q ss_pred -c-hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCcee-EEEecCCCCCccchhHHHHhhh
Q 039334 67 -S-SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNY-HLVLDGEGINEMDENELVKEAS 143 (782)
Q Consensus 67 -~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~-LlVlDdv~~~~~~~~~~~~~~~ 143 (782)
. -+.+..++++++.... ++. . -..|.| ++|+..++.-+.+--.-.+...
T Consensus 100 G~~DRvViQellKevAQt~------------------qie---------~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTM 151 (351)
T KOG2035|consen 100 GNYDRVVIQELLKEVAQTQ------------------QIE---------T-QGQRPFKVVVINEADELTRDAQHALRRTM 151 (351)
T ss_pred CcccHHHHHHHHHHHHhhc------------------chh---------h-ccccceEEEEEechHhhhHHHHHHHHHHH
Confidence 1 1223344444433310 000 0 134455 5556655543222112233334
Q ss_pred hhhhhcCCCCCCCCcEEEEEeeccc-----cC--CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcH
Q 039334 144 SDFKNLLPSVQPDHLKIIMTRRTTK-----QS--GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSP 213 (782)
Q Consensus 144 ~~~~~~~p~~~~~gs~IivTTr~~~-----~~--~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glP 213 (782)
+.+. +..|+|+.-.+-. .. .-.++++..+++|.-..+...... -.-+.+++.+|+++++|.-
T Consensus 152 EkYs--------~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 152 EKYS--------SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNL 222 (351)
T ss_pred HHHh--------cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccH
Confidence 4433 3477777554431 11 156688999999999999984333 3446789999999998874
No 221
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.013 Score=63.08 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=67.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhh
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTE 104 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (782)
++.|.|+-++||||+++.+... .. .. .+.+..-+......-+.+..+....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~-~~--~~---~iy~~~~d~~~~~~~l~d~~~~~~~----------------------- 89 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG-LL--EE---IIYINFDDLRLDRIELLDLLRAYIE----------------------- 89 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh-CC--cc---eEEEEecchhcchhhHHHHHHHHHH-----------------------
Confidence 8999999999999999777766 22 11 4555542222222212222222221
Q ss_pred hhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecccc---------CC--Ce
Q 039334 105 GEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ---------SG--KV 173 (782)
Q Consensus 105 ~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~---------~~--~~ 173 (782)
. -..++..|+||.|... .+|+. ....+...+ . .+|++|+-+... ++ ..
T Consensus 90 -----~-----~~~~~~yifLDEIq~v--~~W~~-------~lk~l~d~~-~-~~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 90 -----L-----KEREKSYIFLDEIQNV--PDWER-------ALKYLYDRG-N-LDVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred -----h-----hccCCceEEEecccCc--hhHHH-------HHHHHHccc-c-ceEEEECCchhhhccchhhhcCCCcee
Confidence 1 1227799999999987 55542 222223222 1 278888877621 11 67
Q ss_pred eecCCCCHHHHHHH
Q 039334 174 IKFPSMSTEESLNL 187 (782)
Q Consensus 174 ~~l~~L~~~~~~~L 187 (782)
+.+.||+..|...+
T Consensus 149 ~~l~PlSF~Efl~~ 162 (398)
T COG1373 149 LELYPLSFREFLKL 162 (398)
T ss_pred EEECCCCHHHHHhh
Confidence 78999999988764
No 222
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.0059 Score=61.14 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHHHHhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
..++.|+|.+|+|||+||..++-...... .....++|++....++..++ .+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 34889999999999999999975412111 11357899998877765544 3344443
No 223
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00016 Score=70.03 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=42.2
Q ss_pred CccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCC---CCCCCCcccEEeccc
Q 039334 636 SLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLP---EMKGLEKLEELRLSG 710 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~---~~~~l~~L~~L~l~~ 710 (782)
+.++|+.+|| .++++.....++.|+.|.|+-|+++++.+ .+.+|++|.|..| .+.++. .+.++|+|+.|-|..
T Consensus 20 ~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCC-CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 4555566665 45555555566666666666666665554 4555666655544 233332 244555555555555
Q ss_pred CCCC
Q 039334 711 CINL 714 (782)
Q Consensus 711 c~~l 714 (782)
||-.
T Consensus 98 NPCc 101 (388)
T KOG2123|consen 98 NPCC 101 (388)
T ss_pred CCcc
Confidence 5433
No 224
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0041 Score=68.66 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=42.3
Q ss_pred hhhhhhHHHHHHHhh------cCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH
Q 039334 5 RVASSQKEKISELLK------EDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 5 ~~~~~~~~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 71 (782)
|++ +-+|+|++.|. +-..+++++||++|+|||.|++.+++. -...| +-+.++.--|..+|
T Consensus 327 GLe-kVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a---l~Rkf---vR~sLGGvrDEAEI 392 (782)
T COG0466 327 GLE-KVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA---LGRKF---VRISLGGVRDEAEI 392 (782)
T ss_pred Cch-hHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH---hCCCE---EEEecCccccHHHh
Confidence 566 77899999881 123579999999999999999999997 33334 34445544454443
No 225
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.015 Score=56.08 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=28.9
Q ss_pred hhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++.|++.+...- +...=|-.+|++|.|||-+|++|+|+
T Consensus 184 eqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 184 EQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred HHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 667776665521 22345778999999999999999998
No 226
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.018 Score=60.88 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=36.0
Q ss_pred chhhhhhhhHHHHHHHhhc-CCceE-EEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE-DGRST-IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-~~~~v-i~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-. +...++..+..+ ++.+. +-+.|+.|+||||+|..+.+.
T Consensus 2 ~~~~~~-~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 2 ELVPWQ-EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred Ccccch-hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH
Confidence 566666 778888888864 44565 889999999999999999987
No 227
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.057 Score=58.67 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=55.7
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|+=|.+ ....++++++.. ...+=|-+.|++|.|||.||+++++...+ +|- -|. .
T Consensus 191 diGG~d-~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v---Pf~---~is--A----- 256 (802)
T KOG0733|consen 191 DIGGLD-KTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV---PFL---SIS--A----- 256 (802)
T ss_pred hccChH-HHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC---ceE---eec--c-----
Confidence 344666 777777777622 12334778999999999999999999333 442 221 1
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
..|+..+.+++ .+.+.+.+.+. ....+|++++|+++-
T Consensus 257 ---peivSGvSGES----------------EkkiRelF~~A-----~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 257 ---PEIVSGVSGES----------------EKKIRELFDQA-----KSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhhcccCccc----------------HHHHHHHHHHH-----hccCCeEEEeecccc
Confidence 23444444432 12222333333 478889999999884
No 228
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.04 Score=62.44 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=34.6
Q ss_pred chhhhhh--hhHHHHHHHhhcC------C--ce-EEEEEcCCCchhHHHHHHHhhcccc
Q 039334 2 DSERVAS--SQKEKISELLKED------G--RS-TIILIGDPGLWKTWLEREISKNKVI 49 (782)
Q Consensus 2 ~~~~~~~--~~~~~l~~~l~~~------~--~~-vi~i~G~~G~GKTtLa~~~~~~~~~ 49 (782)
||.|.++ +|++++++.|... + .+ =+-++|++|+|||-||++++....|
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV 370 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV 370 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC
Confidence 7788884 4555566666432 2 22 3778999999999999999998444
No 229
>PRK04132 replication factor C small subunit; Provisional
Probab=96.44 E-value=0.081 Score=61.71 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=89.8
Q ss_pred Ec--CCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhh
Q 039334 29 IG--DPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGE 106 (782)
Q Consensus 29 ~G--~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (782)
-| |-++||||+|.+++++ ......-..++-+..|+..... ..+++++.+....+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~-l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~---------------------- 625 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARE-LFGENWRHNFLELNASDERGIN-VIREKVKEFARTKP---------------------- 625 (846)
T ss_pred cCCCCCcccHHHHHHHHHHh-hhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC----------------------
Confidence 37 7899999999999998 2211101235677776644443 34444444322000
Q ss_pred hhchhhhcccc-CceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc-cC------CCeeecCC
Q 039334 107 MATHQEENKED-KKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-QS------GKVIKFPS 178 (782)
Q Consensus 107 ~~~~~~~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-~~------~~~~~l~~ 178 (782)
+. .+.-++|||+++..+.+ ....++..+-.. ++..++|++|.... +. ...+++.+
T Consensus 626 ---------~~~~~~KVvIIDEaD~Lt~~-------AQnALLk~lEep-~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ 688 (846)
T PRK04132 626 ---------IGGASFKIIFLDEADALTQD-------AQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 688 (846)
T ss_pred ---------cCCCCCEEEEEECcccCCHH-------HHHHHHHHhhCC-CCCeEEEEEeCChhhCchHHhhhceEEeCCC
Confidence 12 24579999999976322 223332222211 24478888888762 21 26889999
Q ss_pred CCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHH
Q 039334 179 MSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 179 L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~ 217 (782)
++.++..+.+...... -...++....|++.++|.+-.+.
T Consensus 689 ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 689 LRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 9999988888773322 22345678999999999885543
No 230
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.42 E-value=0.0072 Score=60.51 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=55.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
..++|.|.+|+|||||++.+++.... ++-+.++++-+.+.. .+.++.+++...-.....-. ...++. .......
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~-~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEP-PGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCC-HHHHHHH
Confidence 36899999999999999999998222 223445666666555 45666666654311100000 000000 0001112
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.|+++.- +++..|+|+||+-
T Consensus 147 ~~~a~~~AEyfr~~--~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDE--EGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHh--cCCeEEEEEeChh
Confidence 23344556662210 3999999999965
No 231
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.018 Score=61.28 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=78.1
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhh
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTE 104 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (782)
.+.+-|++|+|||+||..++.+ ..++|- -++ | +-++. ..+.....
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~---S~FPFv---Kii-S-pe~mi---------------------------G~sEsaKc 584 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS---SDFPFV---KII-S-PEDMI---------------------------GLSESAKC 584 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh---cCCCeE---EEe-C-hHHcc---------------------------CccHHHHH
Confidence 4667899999999999999998 434442 222 1 10000 00001111
Q ss_pred hhhhchhhhccccCceeEEEecCCCCCccchhHHHH-----hhhhhhhhcCCCCCCCC--cEEEEEeeccccC-------
Q 039334 105 GEMATHQEENKEDKKNYHLVLDGEGINEMDENELVK-----EASSDFKNLLPSVQPDH--LKIIMTRRTTKQS------- 170 (782)
Q Consensus 105 ~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~g--s~IivTTr~~~~~------- 170 (782)
..+++.+... -+..--.||+||+..- =+|--+. ..+..++.++....+.| --|+-||....+.
T Consensus 585 ~~i~k~F~DA-YkS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~ 661 (744)
T KOG0741|consen 585 AHIKKIFEDA-YKSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD 661 (744)
T ss_pred HHHHHHHHHh-hcCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH
Confidence 1111111000 2455568999998743 3333222 22444544455443455 3444555555332
Q ss_pred --CCeeecCCCCH-HHHHHHHHh-hhccccchhHHHHHHHHhc
Q 039334 171 --GKVIKFPSMST-EESLNLLKN-EFSDHQVSGELFEFIAEKG 209 (782)
Q Consensus 171 --~~~~~l~~L~~-~~~~~Lf~~-~~~~~~~~~~~~~~i~~~c 209 (782)
...+.++.++. ++..+.+.. ..-.++..+..+++.+.+|
T Consensus 662 ~F~~~i~Vpnl~~~~~~~~vl~~~n~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 662 CFSSTIHVPNLTTGEQLLEVLEELNIFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hhhheeecCccCchHHHHHHHHHccCCCcchhHHHHHHHhccc
Confidence 27888999887 688888877 3222333444566666666
No 232
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.39 E-value=0.034 Score=65.28 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=31.2
Q ss_pred hhhhhhhhHHHHHHHhhc-------CC--ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE-------DG--RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~-------~~--~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|=+ +.++.|.+.+.. .+ ..++.++|+.|+|||+||+.+++.
T Consensus 456 v~GQ~-~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 456 IFGQD-EAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred eeCcH-HHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 44544 566677777642 11 235789999999999999999987
No 233
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.1 Score=55.03 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=102.0
Q ss_pred hhhhhhhhHHHHHHHhhc----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 3 SERVASSQKEKISELLKE----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
++|-. .|++.+.+|+.. .....+-|.|.+|.|||.+...++.+.......| +++.+....--...++...|+..
T Consensus 152 l~gRe-~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 152 LKGRE-LEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred ccchH-HHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEeeccccchHHHHHHHHHH
Confidence 45666 889999999843 2355899999999999999999999833321222 22444433334556777777777
Q ss_pred hcc-CCCchhhhhhhhhhhhcccchhhhhhhchhhhcccc-CceeEEEecCCCCCccchhH--HHHhhhhhhhhcCCCCC
Q 039334 79 ALC-ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKED-KKNYHLVLDGEGINEMDENE--LVKEASSDFKNLLPSVQ 154 (782)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~kr~LlVlDdv~~~~~~~~~--~~~~~~~~~~~~~p~~~ 154 (782)
+.. ... .....+..+.+.++. -+ .+.+++|+|.++.--+.... ..-..|..
T Consensus 230 ~~q~~~s------------~~~~~~~~~~~~~h~----~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--------- 284 (529)
T KOG2227|consen 230 LLQDLVS------------PGTGMQHLEKFEKHT----KQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--------- 284 (529)
T ss_pred HHHHhcC------------CchhHHHHHHHHHHH----hcccceEEEEechhhHHhhcccceeeeehhccc---------
Confidence 632 111 011123344444441 12 24689999987632000000 01112322
Q ss_pred CCCcEEEEEeecc---------c-------cCCCeeecCCCCHHHHHHHHHhhhcccc---chhHHHHHHHHhcCCc
Q 039334 155 PDHLKIIMTRRTT---------K-------QSGKVIKFPSMSTEESLNLLKNEFSDHQ---VSGELFEFIAEKGRRS 212 (782)
Q Consensus 155 ~~gs~IivTTr~~---------~-------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~~~~~~i~~~c~gl 212 (782)
-++||+|+.---. . .-...+..+|-+.++-.+++++.+.... ......+.+|++|.|.
T Consensus 285 lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 285 LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 2346666543222 0 0116777888899999999998443322 2223445566666554
No 234
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.068 Score=60.05 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=33.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|-+ +.++.+...+......-+-|+|++|+|||++|+.+++.
T Consensus 66 ~iiGqs-~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQE-EGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcH-HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456666 66677776665444456779999999999999999864
No 235
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.027 Score=62.12 Aligned_cols=158 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc--chhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY--SSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
-|-|.|+.|+|||+||+++++... +...-.+..|+.+.-. .+..+++.+.
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------------- 484 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------------- 484 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH--------------------------
Confidence 578999999999999999999733 2222233455543221 2333322222
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCC------CccchhHHHHhhhhhhh-hcCCCCCCCCcE--EEEEeecccc----
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGI------NEMDENELVKEASSDFK-NLLPSVQPDHLK--IIMTRRTTKQ---- 169 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~------~~~~~~~~~~~~~~~~~-~~~p~~~~~gs~--IivTTr~~~~---- 169 (782)
..+.+. +.-.+-+|||||++. .+.++|..-......+. +........+.+ +|-|......
T Consensus 485 --~vfse~-----~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 485 --NVFSEA-----LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred --HHHHHH-----HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 122223 456678999999763 23344443211111111 111111123444 3444443321
Q ss_pred ------CCCeeecCCCCHHHHHHHHHhhhcccc--chhHHHHHHHHhcCCc-HHHHH
Q 039334 170 ------SGKVIKFPSMSTEESLNLLKNEFSDHQ--VSGELFEFIAEKGRRS-PAAIT 217 (782)
Q Consensus 170 ------~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~i~~~c~gl-Plai~ 217 (782)
-+....++.+...+=.++++..+...- ...+...-++.+|+|. |..++
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHH
Confidence 126778899988887777777554322 2222333488888875 44443
No 236
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.35 E-value=0.0034 Score=68.51 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=38.0
Q ss_pred chhhhhhhhHHHHHHHh------hcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELL------KEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l------~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|..|.+ +.+++|++.| .+.+.+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGle-e~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGME-EAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcH-HHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 567888 8999999998 3345679999999999999999999886
No 237
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00019 Score=69.48 Aligned_cols=78 Identities=27% Similarity=0.362 Sum_probs=40.4
Q ss_pred ccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCCCCC------c
Q 039334 458 IKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS---LPKLTKLRFLILRQCSCLEYMPS------L 528 (782)
Q Consensus 458 l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~~~~------~ 528 (782)
..+++.|++|.|+-|. +..+.+ +..+++|+.|+|+.|.|..+.. +.++++|+.|.+..|...+.-+. +
T Consensus 37 c~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 3445555555555542 444443 3555666666666665555443 55666666666666554433221 3
Q ss_pred cCCCcccEEE
Q 039334 529 KELHELEIID 538 (782)
Q Consensus 529 ~~l~~L~~L~ 538 (782)
..|++|+.|+
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 4555555553
No 238
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.046 Score=61.43 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (782)
.+.+-++|++|.|||.||+++++. .+.+|-. |..+ +++...-+ .....
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~---~~~~fi~---v~~~----------~l~sk~vG----------------esek~ 323 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALE---SRSRFIS---VKGS----------ELLSKWVG----------------ESEKN 323 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhh---CCCeEEE---eeCH----------HHhccccc----------------hHHHH
Confidence 346889999999999999999996 2233432 2111 11111111 01111
Q ss_pred hhhhhhchhhhccccCceeEEEecCCCCCccchhHH------HHhhhhhhhhcCCCCCCC-CcEEEEEeeccccC-----
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEGINEMDENEL------VKEASSDFKNLLPSVQPD-HLKIIMTRRTTKQS----- 170 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~------~~~~~~~~~~~~p~~~~~-gs~IivTTr~~~~~----- 170 (782)
+...+... .+..++.|.+|.++.. ..+.- .......++..+...... +-.||-||..+...
T Consensus 324 ir~~F~~A-----~~~~p~iiFiDEiDs~--~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~l 396 (494)
T COG0464 324 IRELFEKA-----RKLAPSIIFIDEIDSL--ASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALL 396 (494)
T ss_pred HHHHHHHH-----HcCCCcEEEEEchhhh--hccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhc
Confidence 22222233 3578899999998752 11110 112333333323211122 23355566555221
Q ss_pred -----CCeeecCCCCHHHHHHHHHhhhccccc---hhHHHHHHHHhcCC
Q 039334 171 -----GKVIKFPSMSTEESLNLLKNEFSDHQV---SGELFEFIAEKGRR 211 (782)
Q Consensus 171 -----~~~~~l~~L~~~~~~~Lf~~~~~~~~~---~~~~~~~i~~~c~g 211 (782)
...+.++.-+.++..+.|+....+... ..-..+.+++...|
T Consensus 397 R~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 397 RPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred ccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 267788888899999999986553222 12234455554444
No 239
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.029 Score=61.25 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=103.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCceE-EEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRST-IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~v-i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|+||=+ .-+..|...+..++..- -...|+-|+||||+|+-++..--... | ....++......+.|..--
T Consensus 17 evvGQe-~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-------~-~~~ePC~~C~~Ck~I~~g~- 86 (515)
T COG2812 17 DVVGQE-HVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-------G-PTAEPCGKCISCKEINEGS- 86 (515)
T ss_pred HhcccH-HHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-------C-CCCCcchhhhhhHhhhcCC-
Confidence 456655 55666777776665443 34689999999999999887632221 1 1233444444444444330
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
..|.-+.|..-...-.+..++.+...-.. .++|--..++|.|.+-. ...|+.++-.+-.+ +.+-+.
T Consensus 87 --~~DviEiDaASn~gVddiR~i~e~v~y~P----~~~ryKVyiIDEvHMLS-------~~afNALLKTLEEP-P~hV~F 152 (515)
T COG2812 87 --LIDVIEIDAASNTGVDDIREIIEKVNYAP----SEGRYKVYIIDEVHMLS-------KQAFNALLKTLEEP-PSHVKF 152 (515)
T ss_pred --cccchhhhhhhccChHHHHHHHHHhccCC----ccccceEEEEecHHhhh-------HHHHHHHhcccccC-ccCeEE
Confidence 01111111100000111111222211111 25665688999999763 33455544333322 245677
Q ss_pred EEEeeccc-cC------CCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHH
Q 039334 161 IMTRRTTK-QS------GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 161 ivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai 216 (782)
|..|.+.. +- ...|.+..++.++-...+......+ ...++....|++..+|..-..
T Consensus 153 IlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDa 217 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDA 217 (515)
T ss_pred EEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhH
Confidence 77777763 22 1778899999998888888743332 234456777888888865443
No 240
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.051 Score=57.29 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=30.6
Q ss_pred chhhhhhhhHHHHHHHhh----cC------C-c--eEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK----ED------G-R--STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~----~~------~-~--~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++.++.+-+++|++=|. .. + + |==-++||+|.|||+++.++++.
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhh
Confidence 455566555666666552 21 1 1 12347999999999999999998
No 241
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.17 E-value=0.021 Score=66.83 Aligned_cols=44 Identities=32% Similarity=0.400 Sum_probs=35.8
Q ss_pred chhhhhhhhHHHHHHHhhc------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|..|++ +-+++|+.++.. ...+++.++|++|+||||+|+.++..
T Consensus 323 ~~~g~~-~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 323 DHYGLE-RVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hccCHH-HHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456777 888999988842 23458999999999999999999986
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.17 E-value=0.015 Score=54.21 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=29.8
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS 67 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 67 (782)
++.|+|++|+||||++..+.... . ..-..+++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI-A--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH-H--hcCCEEEEEECCcchH
Confidence 46899999999999999998872 2 2234677887755543
No 243
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.07 Score=55.84 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=53.1
Q ss_pred cCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc-cC------CCeeecCCCCHHHHHHHHH
Q 039334 117 DKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK-QS------GKVIKFPSMSTEESLNLLK 189 (782)
Q Consensus 117 ~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~-~~------~~~~~l~~L~~~~~~~Lf~ 189 (782)
.+++-.+|+|+++..+.. ..+.++..+-.+ ++++.+|++|.++. .- ...+.+.+++.++..+.+.
T Consensus 130 ~~~~kV~iI~~ae~m~~~-------AaNaLLKtLEEP-p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-------AANALLKTLEEP-PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred cCCceEEEEechhhcCHH-------HHHHHHHHhcCC-CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHH
Confidence 455668888998866322 233333222222 25577777777752 11 2678899999999998887
Q ss_pred hhhccccchhHHHHHHHHhcCCcHHHHH
Q 039334 190 NEFSDHQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 190 ~~~~~~~~~~~~~~~i~~~c~glPlai~ 217 (782)
+. +.. + ...++..++|.|..+.
T Consensus 202 ~~-~~~---~--~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 202 AQ-GVA---D--ADALLAEAGGAPLAAL 223 (342)
T ss_pred Hc-CCC---h--HHHHHHHcCCCHHHHH
Confidence 62 211 1 2235778899997543
No 244
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.12 E-value=0.0024 Score=61.93 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=15.1
Q ss_pred CCCccEEEccCC--CCC-CCCC-CCCCCCCcEEEccCCC
Q 039334 486 MAQLQSLNLSRC--PMK-SLPS-LPKLTKLRFLILRQCS 520 (782)
Q Consensus 486 l~~L~~L~l~~~--~l~-~lp~-l~~l~~L~~L~l~~~~ 520 (782)
|++|++|.++.| .+. +++. ...+++|++|++++|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 444555555544 221 2333 3333455555554443
No 245
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.08 E-value=0.017 Score=57.39 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhH
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNL 70 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 70 (782)
..++.|+|.+|+|||++|.+++.... .....++|++.. .++...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHH
Confidence 44889999999999999999987622 224677999986 555443
No 246
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.04 Score=52.86 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=34.4
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||-|+| -++.+|.+...- +..+=|-++|++|.|||-||++|+++
T Consensus 156 diggld-~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLD-VQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccch-hhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 556777 777777776611 34556778999999999999999999
No 247
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.012 Score=57.80 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=91.0
Q ss_pred chhhhhhhhHHHHHHHhh---------cCC---ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLK---------EDG---RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---------~~~---~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
||-|++ ..++.+.+... .++ .+-|-++|++|.||+.||++|+.. ...-| .+||.+
T Consensus 134 DVAGLE-~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE---AnSTF-----FSvSSS---- 200 (439)
T KOG0739|consen 134 DVAGLE-GAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE---ANSTF-----FSVSSS---- 200 (439)
T ss_pred hhccch-hHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh---cCCce-----EEeehH----
Confidence 778888 88888887761 122 346888999999999999999987 32222 233322
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCC--ccchh--HHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN--EMDEN--ELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~--~~~~~~~~~ 145 (782)
+++...-+++ + ..+++. .+.....|+-+|.+|.+++. .+++. +--+.-=.+
T Consensus 201 ----DLvSKWmGES-----------------E---kLVknL-FemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTE 255 (439)
T KOG0739|consen 201 ----DLVSKWMGES-----------------E---KLVKNL-FEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTE 255 (439)
T ss_pred ----HHHHHHhccH-----------------H---HHHHHH-HHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHH
Confidence 2222222221 1 111111 12223688899999998752 11122 111111112
Q ss_pred hh-hcCCCCC-CCCcEEEEEeeccccCC-------CeeecCCCCHHHHHHHHHh-hhccccch--hHHHHHHHHhcCCcH
Q 039334 146 FK-NLLPSVQ-PDHLKIIMTRRTTKQSG-------KVIKFPSMSTEESLNLLKN-EFSDHQVS--GELFEFIAEKGRRSP 213 (782)
Q Consensus 146 ~~-~~~p~~~-~~gs~IivTTr~~~~~~-------~~~~l~~L~~~~~~~Lf~~-~~~~~~~~--~~~~~~i~~~c~glP 213 (782)
++ ++=-.++ ..|--|+=.|..+-+.. ...-.-||.+..|+.-+.+ .+|+.+.. +.-.++++++..|.-
T Consensus 256 fLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 256 FLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred HHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 22 1111111 23344445566553222 1112346777877776555 78775432 234566777766653
No 248
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.02 E-value=0.021 Score=68.21 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=32.2
Q ss_pred hhhhhhhhHHHHHHHhhcC-------C--ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKED-------G--RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~-------~--~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|=+ +.++.+...+... + ..++.++|+.|+|||++|+.+...
T Consensus 567 v~GQ~-~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 567 VVGQD-EAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred cCCCh-HHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45655 6677777777431 1 236779999999999999999986
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.02 E-value=0.02 Score=56.98 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHHHHh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
..++.|.|.+|+|||+||..++....... +.-..++|++....++...+ .++.+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~ 76 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVR 76 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHH
Confidence 44899999999999999999877622110 00156799998777765544 344443
No 250
>PRK06547 hypothetical protein; Provisional
Probab=95.97 E-value=0.0093 Score=55.98 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=27.1
Q ss_pred HHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 14 ISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 14 l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+...+......+|+|.|++|+||||+|+.+.+.
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 334445567779999999999999999999876
No 251
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.95 E-value=0.0066 Score=58.89 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=44.0
Q ss_pred CCCceEEEccCCCCCCCChhhHhcCCCC---ceEEEecCCCCC----CCCcc---------CCCCccEEEEecCCCCCCC
Q 039334 392 LREVLTLLIDGSRPCEEDHSTFFNLMPK---LQVLAIFKPTFK----SLMSS---------SFERLTVLVLRNCDMLEDI 455 (782)
Q Consensus 392 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~---L~~L~l~~~~~~----~~~~~---------~l~~L~~L~L~~~~~~~~~ 455 (782)
...+..++++||.+.......++....+ |++.+++.-... .++.. .||+|+..+|+.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5567789999998877666666655444 444443321111 01111 5566666666666553322
Q ss_pred -c----cccCCCCCcEEEeecC
Q 039334 456 -T----GIKELKTLSVLEISGA 472 (782)
Q Consensus 456 -~----~l~~l~~L~~L~L~~~ 472 (782)
+ -|+.-..|.+|.+++|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC
Confidence 1 2455556666666655
No 252
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.015 Score=64.16 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=42.5
Q ss_pred hhhhhhHHHHHHHh----hcC--CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH
Q 039334 5 RVASSQKEKISELL----KED--GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 5 ~~~~~~~~~l~~~l----~~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 71 (782)
|++ +-+++|+++| +.+ .-++++.+|++|+|||.+|+.|++- -...|. -++|+.-.|+.+|
T Consensus 415 gm~-dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A---LnRkFf---RfSvGG~tDvAeI 480 (906)
T KOG2004|consen 415 GME-DVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA---LNRKFF---RFSVGGMTDVAEI 480 (906)
T ss_pred chH-HHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH---hCCceE---EEeccccccHHhh
Confidence 455 6688888888 222 3559999999999999999999987 222232 3455666666664
No 253
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.90 E-value=0.011 Score=53.48 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=27.2
Q ss_pred hhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+.++.+-+.. .....|.|+|..|+||+++|+.++..
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 445555555532 23345789999999999999999998
No 254
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.90 E-value=0.017 Score=68.52 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=33.2
Q ss_pred hhhhhhhhHHHHHHHhhc-------CC--ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE-------DG--RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~-------~~--~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|-+ +.++.+.+.+.. .+ ..++.++|+.|+|||.||+.+.+.
T Consensus 568 v~GQ~-~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 568 VIGQD-HALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred EcChH-HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56777 777788777732 11 336889999999999999998776
No 255
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.89 E-value=0.017 Score=58.76 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+++.+...+.+| -++|+.|+|||++++...+.
T Consensus 22 ~~~ll~~l~~~~~pv-Ll~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 22 YSYLLDLLLSNGRPV-LLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHHCTEEE-EEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcE-EEECCCCCchhHHHHhhhcc
Confidence 445666666665555 78999999999999998876
No 256
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.86 E-value=0.071 Score=61.48 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-|.++|++|+|||++|+.+.+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999887
No 257
>PRK06696 uridine kinase; Validated
Probab=95.86 E-value=0.011 Score=58.57 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.3
Q ss_pred hHHHHHHHhhc---CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 10 QKEKISELLKE---DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 10 ~~~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-+++|...+.. ++..+|+|.|.+|+||||+|+.+.+.
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35566666642 45669999999999999999999987
No 258
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.79 E-value=0.031 Score=66.52 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=31.2
Q ss_pred hhhhhhhhHHHHHHHhhc-------CCc--eEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE-------DGR--STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~-------~~~--~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ +.++.|...+.. .+. .++.++|+.|+|||++|+.+++.
T Consensus 570 viGQ~-~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 570 VIGQN-EAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred EeCCH-HHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45655 566666666632 122 36789999999999999999976
No 259
>PRK07667 uridine kinase; Provisional
Probab=95.78 E-value=0.012 Score=56.77 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.+.+.+.. +.+.+|+|.|.+|+||||+|+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666633 33568999999999999999999886
No 260
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.77 E-value=0.021 Score=63.18 Aligned_cols=71 Identities=28% Similarity=0.351 Sum_probs=52.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKT 103 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (782)
+++-++|++|+||||||.-|+++ . .| -++-|..|+.-....+-+.|...+...+.
T Consensus 327 KilLL~GppGlGKTTLAHViAkq---a--GY-sVvEINASDeRt~~~v~~kI~~avq~~s~------------------- 381 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQ---A--GY-SVVEINASDERTAPMVKEKIENAVQNHSV------------------- 381 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHh---c--Cc-eEEEecccccccHHHHHHHHHHHHhhccc-------------------
Confidence 47788999999999999999987 2 24 45788888877766666666555544221
Q ss_pred hhhhhchhhhccc--cCceeEEEecCCCCC
Q 039334 104 EGEMATHQEENKE--DKKNYHLVLDGEGIN 131 (782)
Q Consensus 104 ~~~~~~~~~~~~l--~~kr~LlVlDdv~~~ 131 (782)
+ .+++..+|+|.++..
T Consensus 382 ------------l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 ------------LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ------------cccCCCcceEEEecccCC
Confidence 2 378889999998865
No 261
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.76 E-value=0.09 Score=53.08 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=93.5
Q ss_pred hhhhhhhhHHHHHHHhhc----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch-hHHHHHHHH
Q 039334 3 SERVASSQKEKISELLKE----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS-NLLEEAISR 77 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~ 77 (782)
.+|+. ++..++-.|+.+ ++...+.|+|+.|.|||+|...+..+ .+..-+..+-|........ +.+++.|.+
T Consensus 26 l~g~~-~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 26 LFGVQ-DEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred eeehH-HHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 46777 777778888744 45667889999999999999998888 2222233344444333322 446677777
Q ss_pred hhccCCCchhhhhhhhhhhhcccchhhhhhhchhhh-ccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCC
Q 039334 78 QALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEE-NKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPD 156 (782)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 156 (782)
|+..+...+ .....+..+...++-+.+.. -.-.+.+++.|+|.++---.+..+..-.++-++.+ ....+
T Consensus 102 ql~~e~~~~-------~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq---s~r~P 171 (408)
T KOG2228|consen 102 QLALELNRI-------VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ---SARAP 171 (408)
T ss_pred HHHHHHhhh-------heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh---hcCCC
Confidence 766532111 00111111111222222000 00124457777777663211222222233333332 22234
Q ss_pred CcEEEEEeecc-------ccC----CC-eeecCCCCHHHHHHHHHh
Q 039334 157 HLKIIMTRRTT-------KQS----GK-VIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 157 gs~IivTTr~~-------~~~----~~-~~~l~~L~~~~~~~Lf~~ 190 (782)
-+-|-+|||-. .|- .. ++-++.++-++...+++.
T Consensus 172 iciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 172 ICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred eEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHH
Confidence 47889999976 121 13 455667888888888887
No 262
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.75 E-value=0.027 Score=54.45 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|+|+.|.||||++..+.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988776
No 263
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.73 E-value=0.016 Score=55.70 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc--chhHHHHHHHHhhccC
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY--SSNLLEEAISRQALCE 82 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~ 82 (782)
++||.++|+.|+||||.+.+++..... .-..+..++. +.+ .-.+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~-D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISA-DTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEE-STSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecC-CCCCccHHHHHHHHHHHhccc
Confidence 368999999999999999998887333 2344566664 333 4466677778877763
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.72 E-value=0.0076 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.||+|+||||+++.+.+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHH
Confidence 5899999999999999999977
No 265
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.69 E-value=0.036 Score=55.93 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=37.0
Q ss_pred CchhhhhhhhHHHHHH---HhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHH
Q 039334 1 MDSERVASSQKEKISE---LLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEE 73 (782)
Q Consensus 1 ~~~~~~~~~~~~~l~~---~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 73 (782)
||+|=|+ +..+.|.+ .|.. ...-.-++|+||+||+|+++.++.- . .++ +.-+.+++.++..+.-.
T Consensus 8 m~lVlf~-~ai~hi~ri~RvL~~-~~Gh~LLvG~~GsGr~sl~rLaa~i---~--~~~-~~~i~~~~~y~~~~f~~ 75 (268)
T PF12780_consen 8 MNLVLFD-EAIEHIARISRVLSQ-PRGHALLVGVGGSGRQSLARLAAFI---C--GYE-VFQIEITKGYSIKDFKE 75 (268)
T ss_dssp ------H-HHHHHHHHHHHHHCS-TTEEEEEECTTTSCHHHHHHHHHHH---T--TEE-EE-TTTSTTTHHHHHHH
T ss_pred cceeeHH-HHHHHHHHHHHHHcC-CCCCeEEecCCCccHHHHHHHHHHH---h--ccc-eEEEEeeCCcCHHHHHH
Confidence 6788777 55555444 4443 3456669999999999999998765 2 122 23344567776665533
No 266
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.017 Score=57.63 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhccccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIA 50 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~ 50 (782)
++|-+.||+|.|||+|+++++++-.++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 577889999999999999999996664
No 267
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.075 Score=58.49 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+=|-.+|++|.|||++|+++++.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhh
Confidence 445778999999999999999998
No 268
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.61 E-value=0.0087 Score=57.81 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||+|.|++|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999887
No 269
>PHA02774 E1; Provisional
Probab=95.61 E-value=0.068 Score=58.74 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHHHHHhhcCC-ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 12 EKISELLKEDG-RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 12 ~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
..+..|+.... ..-+.|+|++|+|||.+|..+.+- -+ ...+.||..
T Consensus 422 ~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~---L~--G~vi~fvN~ 468 (613)
T PHA02774 422 TALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKF---LK--GKVISFVNS 468 (613)
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH---hC--CCEEEEEEC
Confidence 44455544332 347999999999999999999987 21 234567764
No 270
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.59 E-value=0.0085 Score=53.39 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
|.|.|++|+||||+|+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999988
No 271
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.59 E-value=0.016 Score=57.64 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++..+|+|.|+.|+|||||++.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999886
No 272
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.59 E-value=0.0094 Score=46.34 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 273
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.58 E-value=0.03 Score=66.58 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=30.8
Q ss_pred hhhhhhhhHHHHHHHhhc-------CCc--eEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE-------DGR--STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~-------~~~--~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|=+ +.++.|.+.+.. .+. .++.++|+.|+|||+||+.+.+.
T Consensus 511 v~GQ~-~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~ 562 (821)
T CHL00095 511 IIGQD-EAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY 562 (821)
T ss_pred CcChH-HHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45545 667777776632 122 25668999999999999999876
No 274
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.063 Score=52.79 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=33.0
Q ss_pred chhhhhhhhHHHHHHHhh---c--------C--CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK---E--------D--GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~--------~--~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+=|++ ++..+|.+... . + ...=|.++|.+|.|||-||++|+|.
T Consensus 186 diGGle-~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 186 DIGGLE-SQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred ccccHH-HHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 566777 77777777662 1 1 1234668999999999999999998
No 275
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.44 E-value=0.012 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..+|+|.|.+|+||||||+.+++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999987
No 276
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.40 E-value=0.023 Score=55.64 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 378999999999999999998854
No 277
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.047 Score=57.59 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=35.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc--chhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY--SSNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~ 81 (782)
..++.++|+.|+||||++.++...... +.....+..++. +.+ .-.+-++...+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTT-DSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEec-ccccccHHHHHHHHHHHcCC
Confidence 458999999999999999999887221 111234555653 333 233444444455444
No 278
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.38 E-value=0.029 Score=60.33 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=50.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCc-hhhhhhhhhhhhcccch
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPN-IEEWEEQEEEEDEDGKK 102 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 102 (782)
.+++|+|..|+|||||++.+.... .....+++..--+.-++.++.+..+.......-. ....++.. ........
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~-~~r~~~~~ 240 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESP-MMRRLAPL 240 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCH-HHHHHHHH
Confidence 378999999999999999988761 1222344443223334444444333322110000 00000000 00112233
Q ss_pred hhhhhhchhhhccccCceeEEEecCCC
Q 039334 103 TEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 103 ~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
....+.+++. -+++..|+++||+-
T Consensus 241 ~a~~iAEyfr---d~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFR---DRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHH---HcCCCEEEeccchH
Confidence 4445566632 25999999999965
No 279
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.38 E-value=0.051 Score=54.37 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=59.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhccc-ccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKV-IASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDED 99 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (782)
..++|.|-.|+|||+|+..+.+... .++.+-+.++++-+.+.. .+.++.+++...-.....-. ...++. ......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~-~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDP-TIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCC-HHHHHH
Confidence 3689999999999999999887722 112234677888887665 55677666665421111000 000000 000112
Q ss_pred cchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 100 GKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
.......+.|+++. .++++.|+|+||+-.
T Consensus 149 a~~~a~aiAEyfrd--~~g~~VLl~~D~ltr 177 (276)
T cd01135 149 TPRMALTTAEYLAY--EKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHh--ccCCeEEEEEcChhH
Confidence 23344556666311 038999999999763
No 280
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.36 E-value=0.04 Score=49.01 Aligned_cols=100 Identities=16% Similarity=0.323 Sum_probs=41.3
Q ss_pred ccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC--ccCCCc
Q 039334 458 IKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS--LKELHE 533 (782)
Q Consensus 458 l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~ 533 (782)
|.++.+|+.+.+.. .+..++...|..+++|+.+.+..+ +..++. +..+++|+.+.+..+ ...++. +..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccccccccccc
Confidence 55556666666653 255555555566666666666653 555554 555556666666442 111221 344555
Q ss_pred ccEEEccCCCCCCcccccccCCCCCccEEEcc
Q 039334 534 LEIIDLSGATSLSSFQQLDFSSHTNLQMVDLS 565 (782)
Q Consensus 534 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 565 (782)
|+.+.+..+ +..+....+..+ +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 555555432 223333344444 55555443
No 281
>PRK08233 hypothetical protein; Provisional
Probab=95.35 E-value=0.013 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999986
No 282
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.063 Score=61.31 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=32.0
Q ss_pred hhhhhhhhHHHHHHHhhc-------CCc--eEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE-------DGR--STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~-------~~~--~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|=+ +..+.+.+.+.. .+. .+.-.+|+.|+|||.||++++..
T Consensus 493 ViGQd-~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~ 544 (786)
T COG0542 493 VIGQD-EAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA 544 (786)
T ss_pred eeChH-HHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH
Confidence 55666 777777777732 222 35667999999999999998876
No 283
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.33 E-value=0.025 Score=58.33 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
.+++-|+|++|+||||||..++.... ..-..++||+....++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHH
Confidence 34778999999999999999877622 22356789998776665
No 284
>PRK06217 hypothetical protein; Validated
Probab=95.31 E-value=0.026 Score=53.85 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=25.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEE
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWI 60 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv 60 (782)
.|.|+|++|+||||+|+++.+.....-.+-|..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 489999999999999999998733211122445553
No 285
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.025 Score=62.65 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=34.9
Q ss_pred Cchhhhhh--hhHHHHHHHhhcC------C--c-eEEEEEcCCCchhHHHHHHHhhcccc
Q 039334 1 MDSERVAS--SQKEKISELLKED------G--R-STIILIGDPGLWKTWLEREISKNKVI 49 (782)
Q Consensus 1 ~~~~~~~~--~~~~~l~~~l~~~------~--~-~vi~i~G~~G~GKTtLa~~~~~~~~~ 49 (782)
+||-|.++ ++..+++..|.+. + . +=+..+|++|.|||.||+++.....|
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 47888883 4455555555442 1 1 23678999999999999999999555
No 286
>PRK09354 recA recombinase A; Provisional
Probab=95.28 E-value=0.027 Score=58.59 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=33.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
.+++-|+|++|+||||||.+++.... ..-..++||+....++.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHH
Confidence 34788999999999999999877622 22356799998777775
No 287
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.26 E-value=0.014 Score=53.24 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999876
No 288
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.20 E-value=0.014 Score=57.05 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|++|+|||||++.+...
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 289
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.20 E-value=0.052 Score=63.14 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=32.0
Q ss_pred hhhhhhhhHHHHHHHhhc-------CC--ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE-------DG--RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~-------~~--~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|=+ +.++.|.+.+.. .+ ..++-++|++|+|||++|+.+...
T Consensus 460 ViGQ~-~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 460 VFGQD-KAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred EeCcH-HHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 45555 667777777742 12 236788999999999999999887
No 290
>PTZ00301 uridine kinase; Provisional
Probab=95.18 E-value=0.016 Score=56.28 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+|+|.|.+|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 468999999999999999988765
No 291
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.15 E-value=0.046 Score=53.68 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=37.3
Q ss_pred hHHHHHHHhh--cCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHH
Q 039334 10 QKEKISELLK--EDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 10 ~~~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 74 (782)
+..++++.+. .++..+|+|.|++|+||+||..++...-.. +.+-=.++=|+-|.+++-=.++.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCccccc
Confidence 4455666663 346779999999999999999998887332 222223455666777765444443
No 292
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.14 E-value=0.032 Score=49.42 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcC--CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKED--GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~~--~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++.+++.+.|... ...+|.+.|.-|+||||+++.+++.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5666777776442 3458999999999999999999987
No 293
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.43 Score=46.00 Aligned_cols=148 Identities=18% Similarity=0.226 Sum_probs=79.5
Q ss_pred hhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH
Q 039334 5 RVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 5 ~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 71 (782)
|++ .+..+|.+.+.- ....=+-++|++|.|||-||++|+++. .+-|+.||.+--+.
T Consensus 151 gLd-~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgselvq-- 219 (404)
T KOG0728|consen 151 GLD-KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSELVQ-- 219 (404)
T ss_pred cHH-HHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHHHHH--
Confidence 455 666666666521 123347789999999999999999981 12345554432111
Q ss_pred HHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc--------cchhHHHHhhh
Q 039334 72 EEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE--------MDENELVKEAS 143 (782)
Q Consensus 72 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--------~~~~~~~~~~~ 143 (782)
..-++. ....++.+...+ ...+-+|..|.+++.- -++.++.+..+
T Consensus 220 ------k~igeg--------------------srmvrelfvmar-ehapsiifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 220 ------KYIGEG--------------------SRMVRELFVMAR-EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred ------HHhhhh--------------------HHHHHHHHHHHH-hcCCceEeeecccccccccccCCCCccHHHHHHHH
Confidence 111111 122222221111 4556788888876530 01333433444
Q ss_pred hhhhhcCCCCCCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHh
Q 039334 144 SDFKNLLPSVQPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 144 ~~~~~~~p~~~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~ 190 (782)
+-+.+.-.......-|||+.|...++.. +-++.++-+++.-.++++-
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 4333321222234478999888764432 5667777777666666654
No 294
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.12 E-value=0.034 Score=57.42 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
-+++-|+|++|+||||||..+..... ..-..++|++....++..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH
Confidence 34788999999999999999877622 223567899887666653
No 295
>PRK06762 hypothetical protein; Provisional
Probab=95.11 E-value=0.017 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999987
No 296
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.09 E-value=0.053 Score=58.09 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=55.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
..++|+|..|+|||||++.+.+. . ..+.++.+-+.+.. .+.++.++++..-..+.+-. ...++. .......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~---~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p-~~~R~~a 236 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG---T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTS-PLMRLKG 236 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC---C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCC-HHHHHHH
Confidence 47899999999999999999875 2 23555666665554 44666666544311110000 000000 0001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.|+++ -+|+..|+++||+-
T Consensus 237 ~~~A~tiAEyfr---d~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFR---DQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHH---HcCCCEEEEEcChH
Confidence 233445666632 25999999999966
No 297
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.05 E-value=0.063 Score=52.20 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=55.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc-cchhHHHHHHHHhhccCCC--chhhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK-YSSNLLEEAISRQALCESP--NIEEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~ 100 (782)
..++|.|.+|+|||+|+..+.+. .+ -+.++.+.+.+. -.+.++.+++...-..+.. -....++.. ......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~---~~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~-~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN---QD--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPP-AARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH---CT--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-H-HHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhc---cc--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhH-HHHhhh
Confidence 47899999999999999999998 22 345577777655 4566666666443111000 000000000 001112
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
....-.+.+++. -+++..|+++||+-
T Consensus 90 ~~~a~t~AEyfr---d~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFR---DQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHH---HTTSEEEEEEETHH
T ss_pred hccchhhhHHHh---hcCCceeehhhhhH
Confidence 223344455522 25999999999965
No 298
>PRK03839 putative kinase; Provisional
Probab=95.05 E-value=0.016 Score=55.15 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999998
No 299
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.03 E-value=0.77 Score=48.43 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHHHhhc---CCceEEEEEcCCCchhHHHHHHHhhccccc-ccccce---EEEEEcccccchhHHHHHHHHhhcc
Q 039334 11 KEKISELLKE---DGRSTIILIGDPGLWKTWLEREISKNKVIA-SSSCYT---TLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 11 ~~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~~f~~---~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
.+.+.+.|.+ ....+|+|.|.=|+|||++.+.+.+..... ...+-. -+|-.-...--...++..|..++..
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~ 82 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEK 82 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHH
Confidence 4566777754 346699999999999999999998873222 001111 1344333232345566666666544
No 300
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.01 E-value=0.018 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.++|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999876
No 301
>PRK04296 thymidine kinase; Provisional
Probab=94.98 E-value=0.07 Score=51.20 Aligned_cols=23 Identities=13% Similarity=-0.100 Sum_probs=20.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++.|+|+.|.||||+|..+..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
Confidence 36778999999999999998887
No 302
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.98 E-value=0.038 Score=51.65 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=30.6
Q ss_pred EEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHH
Q 039334 26 IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISR 77 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 77 (782)
+-|.|.+|+|||++|.++... . ...++++.-++.++. ++.+.|.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~---~~~~~y~at~~~~d~-em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---L---GGPVTYIATAEAFDD-EMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---c---CCCeEEEEccCcCCH-HHHHHHHH
Confidence 568999999999999998765 1 134566666666654 34444444
No 303
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.058 Score=60.22 Aligned_cols=44 Identities=32% Similarity=0.502 Sum_probs=34.3
Q ss_pred chhhhhhhhHHHHHHHhhc---------CC---ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE---------DG---RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~---------~~---~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||=|++ +-+.+|.+-+.- .+ ++=|-++|++|.|||-||++|+..
T Consensus 673 DVGGLe-evK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 673 DVGGLE-EVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred cccCHH-HHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh
Confidence 566777 788888887722 12 334778999999999999999987
No 304
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.92 E-value=0.027 Score=53.47 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=26.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEE
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWI 60 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv 60 (782)
..+|.++|+.|+||||+|+.+++. ....+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~---l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYER---LKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH---HHHcCCcEEEE
Confidence 348999999999999999999987 22234444554
No 305
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.92 E-value=0.003 Score=70.96 Aligned_cols=229 Identities=27% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCccEEEEecCCCCC---CCccccCCCCCcEEEeec-CCCCCCCc---hHHhcCCCCccEEEccCCC-CCCCCC---CC
Q 039334 438 FERLTVLVLRNCDMLE---DITGIKELKTLSVLEISG-ASSLKSNP---DELFDGMAQLQSLNLSRCP-MKSLPS---LP 506 (782)
Q Consensus 438 l~~L~~L~L~~~~~~~---~~~~l~~l~~L~~L~L~~-~~~~~~lp---~~~~~~l~~L~~L~l~~~~-l~~lp~---l~ 506 (782)
++.|+.|.+.++.... ..+.....++|+.|++++ +......+ ..+...+++|+.|+++.+. ++..-- ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Q ss_pred CCCCCcEEEccCCCCCCCCCCc---cCCCcccEEEccCCCCC-CcccccccCCCCCccEEEccCCCCCCCcCcCCCCccc
Q 039334 507 KLTKLRFLILRQCSCLEYMPSL---KELHELEIIDLSGATSL-SSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLS 582 (782)
Q Consensus 507 ~l~~L~~L~l~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~ 582 (782)
.+++|+.|.+.+|..+....-. ..+++|+.|+++.+..+ .........++++|+.+.+..... ++.++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------c~~l~ 338 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------CPSLT 338 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------CccHH
Q ss_pred EEEecCcCC----CCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCC-CCCCc-CCC
Q 039334 583 RILLRGCRK----LHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSAL-EHLPL-TTA 656 (782)
Q Consensus 583 ~L~l~~~~~----~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l-~~l~~-~~~ 656 (782)
.+.+..+.. ....-....+++++.+.+.++.... ....+.+.+|+.+ ..+.. ...
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~-------------------~~~~~~l~gc~~l~~~l~~~~~~ 399 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISD-------------------LGLELSLRGCPNLTESLELRLCR 399 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccC-------------------cchHHHhcCCcccchHHHHHhcc
Q ss_pred CCCCCEEEeecCCCccccc------cccccceeeccccccCCC
Q 039334 657 LKNLELLDLSNTNLKKLPS------ELCNLRKLLLNNCLSLTK 693 (782)
Q Consensus 657 l~~L~~L~L~~~~l~~l~~------~l~~L~~L~L~~~~~l~~ 693 (782)
...++.|+++.+....... ...++..+.+.+|.....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
No 306
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.88 E-value=0.042 Score=51.44 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++.|.|.+|+||||+|..+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5789999999999999999876
No 307
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.80 E-value=0.051 Score=53.22 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHH
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLE 72 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 72 (782)
.+++-|+|++|+|||+++..+... .......++|++... ++...+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~---~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVN---AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH---HHhCCCeEEEEECCC-CCHHHHH
Confidence 458899999999999999998876 212346789999865 5554443
No 308
>PRK08149 ATP synthase SpaL; Validated
Probab=94.77 E-value=0.079 Score=56.90 Aligned_cols=98 Identities=10% Similarity=-0.009 Sum_probs=53.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcc-cccchhHHHHHHHHhhccCCCchh--hhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKA-EKYSSNLLEEAISRQALCESPNIE--EWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~ 100 (782)
..++|+|..|+|||||+..+++. . ..+.++...+. +.-++.++.++............- ..++.. ......
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~---~--~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~-~~r~~a 225 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEH---S--EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSS-VDRCNA 225 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcC---C--CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCH-HHHHhH
Confidence 36899999999999999999886 1 22443334443 333555666666553221100000 000000 001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
......+.+++. -++|..|+++||+-.
T Consensus 226 ~~~a~tiAE~fr---~~G~~Vll~~DslTr 252 (428)
T PRK08149 226 ALVATTVAEYFR---DQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHH---HcCCCEEEEccchHH
Confidence 234445555632 269999999999763
No 309
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.76 E-value=0.26 Score=49.86 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.5
Q ss_pred HHHHHHHhhcC-CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKED-GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~~-~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.++..+.+. ...-++|+|+.|.|||||.+.+...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCc
Confidence 34455555433 3457899999999999999999987
No 310
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.75 E-value=0.19 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 448999999999999999999886
No 311
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=94.74 E-value=0.11 Score=46.10 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHh----hcCCceEEEEEcCCCchhHHHHHH--HhhcccccccccceEEEEEcccc
Q 039334 6 VASSQKEKISELL----KEDGRSTIILIGDPGLWKTWLERE--ISKNKVIASSSCYTTLWINKAEK 65 (782)
Q Consensus 6 ~~~~~~~~l~~~l----~~~~~~vi~i~G~~G~GKTtLa~~--~~~~~~~~~~~f~~~~wv~~~~~ 65 (782)
|..+++.-++.++ .+++..+|+|-||+-+|||.-+-+ ||.+ + -|.-+|.+
T Consensus 33 FvReeLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAn---K-------rW~f~SST 88 (192)
T PF11868_consen 33 FVREELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCAN---K-------RWLFLSST 88 (192)
T ss_pred EEhhHhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcC---c-------eEEEeeHH
Confidence 3445555555555 568899999999999999986655 4444 1 27777665
No 312
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.74 E-value=0.12 Score=52.17 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=38.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhccccc---ccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIA---SSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
+.=|+|.+|+|||.|+..++-.-... .+.-..++|++-...|+...+. +|+++..
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 77899999999999998876542221 1222458999988888887764 5666543
No 313
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.74 E-value=0.085 Score=54.10 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
..++.|+|++|+||||++..+...... +..-..+..|+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEEC
Confidence 458999999999999999998876222 111134566664
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.71 E-value=0.041 Score=55.61 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 10 QKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 10 ~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..++..+++.+.+..+|.|+|.+|+|||||...+.+.
T Consensus 91 ~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 91 LAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455566666677889999999999999999999987
No 315
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=1.3 Score=45.57 Aligned_cols=164 Identities=9% Similarity=-0.020 Sum_probs=88.9
Q ss_pred HHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhccccc-------ccccceEEEEEc-ccccchhHHHHHHHHhhcc
Q 039334 11 KEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIA-------SSSCYTTLWINK-AEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 11 ~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~-------~~~f~~~~wv~~-~~~~~~~~~~~~i~~~~~~ 81 (782)
++.+.+.+..+..+ +.-++|..|.||+++|+.+.+.-.+. +.+-+.+.++.. .....+.++ +++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhcc
Confidence 44555666666555 55689999999999999987763221 112222334432 122222222 233333322
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKII 161 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~Ii 161 (782)
. .+ -.+.+-++|+|++... . ....+.++..+-.+ ++++.+|
T Consensus 84 ~--------------------------~~-----~~~~~KvvII~~~e~m--~-----~~a~NaLLK~LEEP-p~~t~~i 124 (299)
T PRK07132 84 S--------------------------SF-----VQSQKKILIIKNIEKT--S-----NSLLNALLKTIEEP-PKDTYFL 124 (299)
T ss_pred C--------------------------Cc-----ccCCceEEEEeccccc--C-----HHHHHHHHHHhhCC-CCCeEEE
Confidence 0 00 1257778888998754 2 11223333333332 2457777
Q ss_pred EEeecc-cc------CCCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHH
Q 039334 162 MTRRTT-KQ------SGKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 162 vTTr~~-~~------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
++|.+. .+ ....+++.+++.++..+.+.+. + .+++.+..++...+|.-.|+..
T Consensus 125 l~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~---~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 125 LTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N---KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C---CChhHHHHHHHHcCCHHHHHHH
Confidence 766654 22 1277889999999888776642 1 3334566666666763344443
No 316
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.027 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+-+|+|.|.+|+||||+|+.+++.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 317
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.36 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhcc
Q 039334 25 TIILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~ 47 (782)
-+.++|+.|+||||+|+.+.+.-
T Consensus 23 A~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 23 AWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999988763
No 318
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.65 E-value=0.12 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++++|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999765
No 319
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.65 E-value=0.051 Score=49.21 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=28.1
Q ss_pred EEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH
Q 039334 26 IILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 71 (782)
|.++|++|+|||+||+.+++. ... ...-+.+++..+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~---~~~---~~~~i~~~~~~~~~dl 41 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL---LGR---PVIRINCSSDTTEEDL 41 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH---HTC---EEEEEE-TTTSTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH---hhc---ceEEEEeccccccccc
Confidence 578999999999999999998 211 2234556666665554
No 320
>PRK00625 shikimate kinase; Provisional
Probab=94.63 E-value=0.024 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999887
No 321
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.63 E-value=0.022 Score=55.26 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|++|+||||+|+.+.+-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 322
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.62 E-value=0.046 Score=50.07 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=31.3
Q ss_pred hhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 8 SSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 8 ~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+..+++.+++.+ +++.++|..|+|||||+..+..+
T Consensus 23 ~~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 3567888888766 58999999999999999999998
No 323
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.60 E-value=0.061 Score=47.81 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=42.3
Q ss_pred CchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEccCCCCCCccccccc
Q 039334 478 NPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLSGATSLSSFQQLDF 553 (782)
Q Consensus 478 lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l 553 (782)
+++..|..+.+|+.+.+.. .+..++. +..+++|+.+.+..+ +..++. +..+++|+.+.+... ...+....+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccc
Confidence 3444567778888888875 5666766 777778888888764 333443 456656777766542 233334455
Q ss_pred CCCCCccEEEccC
Q 039334 554 SSHTNLQMVDLSY 566 (782)
Q Consensus 554 ~~l~~L~~L~l~~ 566 (782)
..+++|+.+.+..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 5566666666543
No 324
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.57 E-value=0.087 Score=57.17 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=58.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
..++|.|.+|+|||||+..+.+.... ++-+.++++-+.+.. .+.++.+++...-.....-. ...++. .......
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~-~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEP-PGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCC-HHHHHHH
Confidence 47899999999999999998887222 346777888776554 45667666654321110000 000000 0001222
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.++++.- +++..|+++|++-
T Consensus 221 ~~~a~tiAEyfrd~--~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDE--EKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHh--cCCceEEEeccch
Confidence 33445556662100 3899999999975
No 325
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.058 Score=55.38 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=30.9
Q ss_pred chhhhhhhhHHHHHHHhh---------cC---CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK---------ED---GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---------~~---~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|+. +.++-|.+.+. .+ ..+-|..+|++|.|||-||++|+..
T Consensus 213 DIagl~-~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 213 DIAGLH-EAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred hhcchH-HHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 566776 55544444431 12 2335888999999999999999997
No 326
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.51 E-value=0.023 Score=55.84 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999886
No 327
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.51 E-value=1 Score=50.32 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=67.2
Q ss_pred hhHHHHHHHh----hc-CCceEEEEEcCCCchhHHHHHHHhhcccc--cc---cccceEEEEEcccccchhHHHHHHHHh
Q 039334 9 SQKEKISELL----KE-DGRSTIILIGDPGLWKTWLEREISKNKVI--AS---SSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 9 ~~~~~l~~~l----~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~--~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
.+..+|.+.+ .+ +..+.+-|.|.+|+|||..+..|.+...- ++ ..|+ ++.|..-+-....++-..|..+
T Consensus 403 ~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~ 481 (767)
T KOG1514|consen 403 NEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEA 481 (767)
T ss_pred HHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHh
Confidence 5666776666 23 33447889999999999999999885221 11 2343 4677766777789999999999
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
+.++.. .| ....+.+...+... +-+.+.+++++|+++.
T Consensus 482 lsg~~~---~~-------~~al~~L~~~f~~~----k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 482 LSGERV---TW-------DAALEALNFRFTVP----KPKRSTTVVLIDELDI 519 (767)
T ss_pred cccCcc---cH-------HHHHHHHHHhhccC----CCCCCCEEEEeccHHH
Confidence 988542 11 12222222222211 1145667888888764
No 328
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.50 E-value=0.025 Score=53.70 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 329
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.49 E-value=0.034 Score=51.81 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4568999999999999999999977
No 330
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.49 E-value=0.064 Score=57.83 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+.++|++|+|||++|+.++..
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999876
No 331
>PRK04040 adenylate kinase; Provisional
Probab=94.48 E-value=0.03 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999999999887
No 332
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.48 E-value=0.19 Score=62.53 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
=|-++|++|+|||.||++++.+
T Consensus 1632 GILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHh
Confidence 4778999999999999999998
No 333
>PRK14974 cell division protein FtsY; Provisional
Probab=94.46 E-value=0.15 Score=53.26 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.++|++|+||||++.+++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999988888765
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.029 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998
No 335
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.45 E-value=0.029 Score=48.73 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=18.5
Q ss_pred EEEEcCCCchhHHHHHHHhhcccccccccc
Q 039334 26 IILIGDPGLWKTWLEREISKNKVIASSSCY 55 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~~~~~~~~f~ 55 (782)
|-|+|.+|+||||+|+.+... .+..|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~---~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS---LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH---TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH---cCCcee
Confidence 568999999999999999998 344554
No 336
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.45 E-value=0.22 Score=54.17 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
.+++.++|++|+||||++.++....... .....++.|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEEC
Confidence 3589999999999999999887652201 12235566765
No 337
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.43 E-value=0.025 Score=48.54 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.1
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
|-|+|++|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998887
No 338
>PRK10867 signal recognition particle protein; Provisional
Probab=94.41 E-value=0.11 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..||.++|++|+||||.+.+++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999988888765
No 339
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.40 E-value=0.026 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|+|++|+||||+|+.+.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999887
No 340
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.40 E-value=0.12 Score=54.77 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=57.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
=+-|||..|.|||.|+-.+|+.-.+.+ .||+ +...++.+.+..... ....+.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-----------~~~~l~ 118 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-----------QDDPLP 118 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-----------CCccHH
Confidence 477999999999999999999855421 2332 344444444433110 011112
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT 167 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~ 167 (782)
... +. +.++.-||.+|.+.-.+-.+-.++..-++.+. ..|-.+|.||...
T Consensus 119 ~va----~~-----l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~-------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 119 QVA----DE-----LAKESRLLCFDEFQVTDIADAMILKRLFEALF-------KRGVVLVATSNRP 168 (362)
T ss_pred HHH----HH-----HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH-------HCCCEEEecCCCC
Confidence 222 22 34555699999977652244445555566655 2445555555443
No 341
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.39 E-value=0.056 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|.|||||.+.++.-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999887
No 342
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.38 E-value=0.034 Score=50.21 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKA 63 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 63 (782)
+||.|+|..|+|||||++.+.+. ... ..+...+..+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~-~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKR-RGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHH-TT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhH-cCCceEEEEEcc
Confidence 58999999999999999999998 332 335554455543
No 343
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.11 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|+++|++|+||||++.+++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999876
No 344
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.35 E-value=0.11 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|.|||||.+.++.-
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999986
No 345
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.35 E-value=0.12 Score=55.76 Aligned_cols=98 Identities=10% Similarity=0.004 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDED 99 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (782)
-..++|+|..|+|||||++.+++. . ..+.++.+-+.+.. .+.++.++.+..-+....-. ...++. ......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~---~--~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~-~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARN---A--DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEP-ALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc---c--CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCC-HHHHHH
Confidence 347899999999999999999987 2 23455556665544 34566555544321100000 000000 000111
Q ss_pred cchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 100 GKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
.......+.+++. -+++..|+++||+-
T Consensus 232 a~~~a~tiAEyfr---d~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFR---DQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHH---HCCCcEEEEEeCcH
Confidence 2333445666632 25999999999975
No 346
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.35 E-value=0.058 Score=51.51 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEE
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWIN 61 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 61 (782)
.++|.|+|+.|+|||||++.+.+. ....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~---~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE---FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH---STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh---cccccccceeec
Confidence 468999999999999999999997 334565555554
No 347
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.34 E-value=0.14 Score=55.58 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc--chhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY--SSNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~ 81 (782)
..+|.++|.+|+||||.|.+++... . +..+ .++-|+. +.+ ...+.++.+.++++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L-~-~~g~-kV~lV~~-D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYF-K-KKGL-KVGLVAA-DTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEecC-CCCCHHHHHHHHHHHHHcCC
Confidence 5689999999999999999998762 2 1222 3344443 222 224445566666554
No 348
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.34 E-value=0.065 Score=53.40 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=38.3
Q ss_pred hhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhccc-----ccccccceEEEEEcccccchhHHHHHHHH
Q 039334 8 SSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKV-----IASSSCYTTLWINKAEKYSSNLLEEAISR 77 (782)
Q Consensus 8 ~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~-----~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 77 (782)
+++.+.+...+.... +..|+|++|+||||++..+...-. .....-..+++++ .....+..++..+.+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~-~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS-PSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE-SSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec-CCchhHHHHHHHHHh
Confidence 355666666665543 688999999999987777766621 0012223345554 444456666666665
No 349
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.30 E-value=0.058 Score=51.72 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=28.9
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
+|+|+|-||+||||+|..+... ...++.|+ +.=|+....+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCChH
Confidence 5899999999999999996555 22223243 4566665555443
No 350
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.29 E-value=1.6 Score=47.49 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=33.9
Q ss_pred hhhhhhHHHHHHHhh-----cC--CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 5 RVASSQKEKISELLK-----ED--GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 5 ~~~~~~~~~l~~~l~-----~~--~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-++...+++|..||. .. +.+|+-|.|++|+||||-++.++..
T Consensus 85 AVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 85 AVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred hhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHh
Confidence 345566788888986 22 4569999999999999999999887
No 351
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.28 E-value=0.14 Score=53.30 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccc---cccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVI---ASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
..++.|.|.+|+|||||+..++..-.. ....-..++|++....|+... +.++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 447889999999999999988753111 111123579999888777765 3445555443
No 352
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.28 E-value=0.065 Score=53.37 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred HHHHHHh--hcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHH
Q 039334 12 EKISELL--KEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISR 77 (782)
Q Consensus 12 ~~l~~~l--~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 77 (782)
.+++..+ ..++..||+|.|.||+||+||..++-... ..+++-=.++=|+-|++|.-=.++.+=++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 3455554 34567799999999999999999988873 32333334566777888876666555444
No 353
>PTZ00035 Rad51 protein; Provisional
Probab=94.28 E-value=0.15 Score=53.49 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccc---cccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVI---ASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
..++.|+|.+|+|||||+..++-.... ....-..++|++....|+..+ +.+++++++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 347889999999999999988754221 111223567999877777766 3455555443
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.13 Score=53.91 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=35.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch--hHHHHHHHHhhcc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS--NLLEEAISRQALC 81 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~~~~ 81 (782)
+.+++.++|+.|+||||++..++... .. . -..+.+|+. +++.. .+-++...+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~-~-g~~V~lIta-DtyR~gAveQLk~yae~lgv 262 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LK-Q-NRTVGFITT-DTFRSGAVEQFQGYADKLDV 262 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HH-c-CCeEEEEeC-CccCccHHHHHHHHhhcCCC
Confidence 35689999999999999999998762 21 2 234566765 33322 3344555554443
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.24 E-value=0.035 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++.|+|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999886
No 356
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.24 E-value=0.1 Score=51.40 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS 67 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 67 (782)
.+++.|.|.+|+||||+|.+++.... ..-..++|++....++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 45888999999999999999987622 2234678887655554
No 357
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.033 Score=49.99 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=30.9
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
+|.|-|++|+||||+|+.+.++ -+ .. .| +-=.+.+++++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~---~g--l~---~v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH---LG--LK---LV------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH---hC--Cc---ee------eccHHHHHHHHHcCC
Confidence 6889999999999999999998 21 11 12 222466777777665
No 358
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.034 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|-||=|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 458999999999999999999998
No 359
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.20 E-value=0.26 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999887
No 360
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.20 E-value=0.29 Score=53.86 Aligned_cols=65 Identities=11% Similarity=0.220 Sum_probs=42.5
Q ss_pred hHHHHHHHhhcCCceEEEEEcCCCchhHH-HHHHHhhcccccccccceEEEEEccccc--chhHHHHHHHHhhccC
Q 039334 10 QKEKISELLKEDGRSTIILIGDPGLWKTW-LEREISKNKVIASSSCYTTLWINKAEKY--SSNLLEEAISRQALCE 82 (782)
Q Consensus 10 ~~~~l~~~l~~~~~~vi~i~G~~G~GKTt-La~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~ 82 (782)
.++++++.+.++ .||.|+|-.|.|||| |++.+|.+.-- -.. .|.+.++- ....+.+.+.+.++..
T Consensus 360 ~R~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~edGY~----~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 360 CRDQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYEDGYA----DNG--MIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHhcccc----cCC--eeeecCchHHHHHHHHHHHHHHhCCc
Confidence 456677777664 599999999999987 78888888111 122 33334443 4455567777777553
No 361
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.17 Score=50.58 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVI 49 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~ 49 (782)
.+.|||++|.|||-+|++|+....+
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCC
Confidence 5789999999999999999998433
No 362
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.16 E-value=0.085 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.336 Sum_probs=18.7
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999987
No 363
>COG4240 Predicted kinase [General function prediction only]
Probab=94.14 E-value=0.11 Score=49.38 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhh
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
+.=+++|.|+.|+||||++..+++.-.- +.- +-++-.++.+-+-...-...++++.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~-kg~-ert~~lSLDDlYlthadrl~La~q~ 104 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAA-KGL-ERTATLSLDDLYLTHADRLRLARQV 104 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHH-hcc-cceEEeehhhhhcchHHHHHHHHhc
Confidence 3448999999999999999999998322 321 3445555444443334444455553
No 364
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.10 E-value=0.069 Score=59.24 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=40.5
Q ss_pred hhhhhhHHHHHHHhhcC-----CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEE
Q 039334 5 RVASSQKEKISELLKED-----GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWIN 61 (782)
Q Consensus 5 ~~~~~~~~~l~~~l~~~-----~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 61 (782)
-++...+++|..||.+. ..+++.+.|++|+||||.++.+++. -.|+.+=|..
T Consensus 22 avhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e-----lg~~v~Ew~n 78 (519)
T PF03215_consen 22 AVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE-----LGFEVQEWIN 78 (519)
T ss_pred hccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH-----hCCeeEEecC
Confidence 34557788999999542 2458889999999999999999987 2367777864
No 365
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.10 E-value=0.37 Score=43.84 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 348899999999999999999887
No 366
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.07 E-value=0.016 Score=33.32 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=11.7
Q ss_pred CcCEEeccCCCCCCCChhhh
Q 039334 725 KLDLLDISNTGIREIPDEIL 744 (782)
Q Consensus 725 ~L~~L~l~~~~l~~lp~~~~ 744 (782)
+|+.|++++|+++.+|.++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
No 367
>PF13245 AAA_19: Part of AAA domain
Probab=94.06 E-value=0.057 Score=42.73 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4668888999999999655554444
No 368
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.12 Score=56.67 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|++|+||||++.++...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988765
No 369
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.05 E-value=0.13 Score=55.21 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDED 99 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (782)
-..++|+|..|+|||||.+.+++. . ..+.++.+-+.+.. .+.++.++.+..-.....-. ...++. ......
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~---~--~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p-~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRS---A--EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRP-SMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcC---C--CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCC-HHHHHH
Confidence 347899999999999999999997 2 23566777776554 44555544433211100000 000000 000111
Q ss_pred cchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 100 GKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
.......+.|+++ -++++.|+++|++-.
T Consensus 236 a~~~a~tiAEyfr---d~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFR---DQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHH---HcCCCEEEeccchhH
Confidence 2223445666632 259999999999763
No 370
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.04 E-value=0.18 Score=59.18 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=28.7
Q ss_pred hhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 6 VASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 6 ~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+++++.+...+.. .+++.|.|.+|+||||+++.+..-
T Consensus 353 Ls~~Q~~Av~~i~~s--~~~~il~G~aGTGKTtll~~i~~~ 391 (744)
T TIGR02768 353 LSEEQYEAVRHVTGS--GDIAVVVGRAGTGKSTMLKAAREA 391 (744)
T ss_pred CCHHHHHHHHHHhcC--CCEEEEEecCCCCHHHHHHHHHHH
Confidence 454556655554433 348889999999999999998765
No 371
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.04 E-value=0.059 Score=56.40 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=35.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|||-+ +.+..++..+.+.+..-|.|.|..|+||||+|+.+++-
T Consensus 18 ~ivGq~-~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 18 AIVGQE-EMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHhChH-HHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 578888 77777777776766666669999999999999999765
No 372
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.03 E-value=0.048 Score=48.13 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
.+-|-|.|-+|+||||+|..++.. ..|. |+++|+-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~-----~~~~---~i~isd~v 42 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK-----TGLE---YIEISDLV 42 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH-----hCCc---eEehhhHH
Confidence 456889999999999999999965 2343 77766543
No 373
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.073 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.112 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999886
No 374
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.01 E-value=0.037 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 375
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.088 Score=57.29 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=78.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhh
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTE 104 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (782)
=|-+||++|.|||-||++|+|. .+..| +-|.-.. ++.. .-+| -+
T Consensus 547 GvLL~GPPGCGKTLlAKAVANE---ag~NF---isVKGPE------LlNk----YVGE--------------------SE 590 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANE---AGANF---ISVKGPE------LLNK----YVGE--------------------SE 590 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhh---ccCce---EeecCHH------HHHH----Hhhh--------------------HH
Confidence 4778999999999999999998 44444 2332111 1110 0010 01
Q ss_pred hhhhchhhhccccCceeEEEecCCCCC--cc--chhHHHHhhhhhhhhcCC-CCCCCCcEEEEEeeccccCC--------
Q 039334 105 GEMATHQEENKEDKKNYHLVLDGEGIN--EM--DENELVKEASSDFKNLLP-SVQPDHLKIIMTRRTTKQSG-------- 171 (782)
Q Consensus 105 ~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~--~~~~~~~~~~~~~~~~~p-~~~~~gs~IivTTr~~~~~~-------- 171 (782)
..+++.++.. -...+|.|.+|.++.- .+ +....-....+.++.-+- .....|-=||-.|..+++..
T Consensus 591 rAVR~vFqRA-R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGR 669 (802)
T KOG0733|consen 591 RAVRQVFQRA-RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHHHh-hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCc
Confidence 2222222111 2577899999998741 00 111111122333321111 11234455666676664432
Q ss_pred --CeeecCCCCHHHHHHHHHhhhccc--cchhHH-HHHHHH--hcCCcHHH
Q 039334 172 --KVIKFPSMSTEESLNLLKNEFSDH--QVSGEL-FEFIAE--KGRRSPAA 215 (782)
Q Consensus 172 --~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~-~~~i~~--~c~glPla 215 (782)
..+-++.-+.+|=.++++....+. ...+++ ..+|++ +|.|.--|
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGA 720 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGA 720 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchh
Confidence 566677777888888888733321 111121 344544 56676533
No 376
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.99 E-value=0.11 Score=50.24 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++.|.|+.|.||||+.+.+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998765
No 377
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.97 E-value=0.04 Score=51.44 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|-+.|++|+||||+|+.+.+-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35678999999999999999886
No 378
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.37 Score=56.12 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=56.9
Q ss_pred hhhhhhhhHHHHHHHhhcC--------CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHH
Q 039334 3 SERVASSQKEKISELLKED--------GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~--------~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 74 (782)
|+|=+ +....|...+... +...+.+.|+.|+|||.||+++..- .. +..+..+-++.|. ...
T Consensus 564 V~gQ~-eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~-~F--gse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 564 VIGQD-EAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY-VF--GSEENFIRLDMSE------FQE- 632 (898)
T ss_pred ccchH-HHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH-Hc--CCccceEEechhh------hhh-
Confidence 34444 6667777777331 1224678999999999999999886 11 2334444554433 222
Q ss_pred HHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEE-ecCCCCC
Q 039334 75 ISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLV-LDGEGIN 131 (782)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlV-lDdv~~~ 131 (782)
+.+-++.+. ..-..+....+.+. ++.++|=+| ||||+..
T Consensus 633 vskligsp~-------------gyvG~e~gg~Ltea-----vrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPP-------------GYVGKEEGGQLTEA-----VKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCc-------------ccccchhHHHHHHH-----HhcCCceEEEEechhhc
Confidence 333333311 11122233455566 678888554 6999976
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.96 E-value=0.053 Score=52.97 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.1
Q ss_pred HhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 17 LLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 17 ~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.+.+.++|+++|..|+|||||..++.+.
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999999999876
No 380
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.96 E-value=0.14 Score=50.74 Aligned_cols=127 Identities=12% Similarity=0.023 Sum_probs=65.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccc-----ccchhHHHHHHHHhhccCCCchhhhhhhhhhhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAE-----KYSSNLLEEAISRQALCESPNIEEWEEQEEEED 97 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 97 (782)
-.+++++|.+|.||||+++.+..=... -...++..-.+ .....+-..++++.++... ..-.. ...+
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~p----t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~-~~~~r----yPhe 109 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEP----TSGEILFEGKDITKLSKEERRERVLELLEKVGLPE-EFLYR----YPHE 109 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCC----CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCH-HHhhc----CCcc
Confidence 348999999999999999999987332 12223332111 2223444556666655311 11111 1112
Q ss_pred cccchhhh-hhhchhhhccccCceeEEEecCCCCCccchhHH---HHhhhhhhhhcCCCCCCCCcEEEEEeeccccCC
Q 039334 98 EDGKKTEG-EMATHQEENKEDKKNYHLVLDGEGINEMDENEL---VKEASSDFKNLLPSVQPDHLKIIMTRRTTKQSG 171 (782)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~---~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~~~ 171 (782)
.+.-+++. .+... +.-++-+||.|..-+. -+-.. +-.-+.++.. ..|--.+..|.+-.++.
T Consensus 110 lSGGQrQRi~IARA-----Lal~P~liV~DEpvSa--LDvSiqaqIlnLL~dlq~------~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 110 LSGGQRQRIGIARA-----LALNPKLIVADEPVSA--LDVSVQAQILNLLKDLQE------ELGLTYLFISHDLSVVR 174 (268)
T ss_pred cCchhhhhHHHHHH-----HhhCCcEEEecCchhh--cchhHHHHHHHHHHHHHH------HhCCeEEEEEEEHHhhh
Confidence 33333322 33444 5788899999996653 11111 1111222221 34566777777765443
No 381
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.96 E-value=0.041 Score=52.41 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|+|+|+.|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999986
No 382
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.95 E-value=0.37 Score=54.67 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=30.9
Q ss_pred hhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ ..+.++.+.+.. .....|.|+|..|+|||++|+.+++.
T Consensus 198 liG~s-~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 198 IIGKS-PAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred eEECC-HHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 45655 556666665533 12335679999999999999999987
No 383
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.95 E-value=0.046 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...|.++|++|+||||+|+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999997
No 384
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.92 Score=44.09 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=33.0
Q ss_pred chhhhhhhhHHHHHHHhhc----------C---CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE----------D---GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----------~---~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+-|++ .+.+++++.+.- - ...=+-.+|++|.|||-+|++.+..
T Consensus 172 DiGGld-kQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 172 DIGGLD-KQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred ccccHH-HHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 567788 788888887721 1 1224678999999999999998776
No 385
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.94 E-value=0.038 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|+|+.|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 386
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.93 E-value=0.32 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++..|.|.+|+||||+++.+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 458889999999999999998775
No 387
>PRK13949 shikimate kinase; Provisional
Probab=93.93 E-value=0.04 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|+|+.|+||||+++.+++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999987
No 388
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.91 E-value=0.33 Score=56.85 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=30.6
Q ss_pred hhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ ..+.++.+.+.. ....-|-|+|..|+|||++|+.+++.
T Consensus 378 liG~S-~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 378 IIGRS-EAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred eeecC-HHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45555 555555554432 22346889999999999999999987
No 389
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.91 E-value=0.047 Score=49.78 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.||-|+|.+|+||||||+++.+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999998
No 390
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.89 E-value=0.14 Score=53.07 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=39.7
Q ss_pred eEEEEEcCCCchhHHHHHHHhhccccc---ccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIA---SSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
+++-|+|++|+|||+|+..++-..... ...-..++||+...+|+...+. +++++++.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 477799999999999998876431211 1112467999998888887764 45666544
No 391
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.88 E-value=0.09 Score=50.98 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~ 45 (782)
.+++.|+|+.|.|||||.+.+..
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46899999999999999999883
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.86 E-value=0.13 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|.++|++|+|||++|+.+...
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999987
No 393
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.86 E-value=0.15 Score=55.05 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
..++|.|.+|+|||+|+..+.+. .. +.+-+.++++-+.+.. .+.++.+++...-.....-. ...++. .......
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~-~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~-~~~r~~~ 215 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHN-MV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEP-PGARFRV 215 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHH-HH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCC-HHHHHHH
Confidence 36899999999999999998887 22 2234678888886655 45666666554311100000 000000 0001222
Q ss_pred chhhhhhhchhhhccc-cCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKE-DKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~ 130 (782)
......+.|+++ - +++..|+++||+-.
T Consensus 216 ~~~a~tiAEyfr---d~~G~~VLl~~DslTR 243 (449)
T TIGR03305 216 GHTALTMAEYFR---DDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHH---HhcCCceEEEecChHH
Confidence 334455556621 1 58999999999763
No 394
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.86 E-value=0.045 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999876
No 395
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.85 E-value=0.13 Score=55.39 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc-cchhHHHHHHHHhhccCCCc--hhhhhhhhhhhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK-YSSNLLEEAISRQALCESPN--IEEWEEQEEEEDED 99 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~ 99 (782)
-.+++|+|..|+|||||++.+.+. . +.+..+++.+.+. ..+.+++++....-.....- ...++... .....
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~---~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~-~~r~~ 228 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA---P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPA-LERVR 228 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC---C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCH-HHHHH
Confidence 347899999999999999999876 2 2344455554443 34446666554311000000 00000000 00111
Q ss_pred cchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 100 GKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
.......+.+++. -++++.|+++||+-.
T Consensus 229 a~~~a~tiAEyfr---d~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFR---DNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHH---HCCCcEEEEEeCHHH
Confidence 2223445566632 259999999999763
No 396
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.85 E-value=0.067 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|.+|.|||||++.+..=
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Confidence 348999999999999999999876
No 397
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.85 E-value=0.12 Score=48.97 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=25.1
Q ss_pred HHHHhhc-CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 14 ISELLKE-DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 14 l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++.+.. .....|.|.|++|+||||+.+.+...
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHHHHhhhc
Confidence 3444443 44457899999999999999999875
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.83 E-value=0.12 Score=54.92 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..++.++|++|+||||++.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 399
>PRK14530 adenylate kinase; Provisional
Probab=93.82 E-value=0.044 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999887
No 400
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.79 E-value=0.065 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+-+|+|.|..|+||||+|+.+..-
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999877543
No 401
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.82 Score=47.13 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=26.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKA 63 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 63 (782)
-|-..|++|.|||-||+++... .+..|- =|.+|
T Consensus 129 GiLL~GPpG~GKTmlAKA~Ake---aga~fI---nv~~s 161 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKE---AGANFI---NVSVS 161 (386)
T ss_pred cceecCCCCchHHHHHHHHHHH---cCCCcc---eeecc
Confidence 4678999999999999999998 555663 45554
No 402
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.044 Score=49.99 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEEcCCCchhHHHHHHHh
Q 039334 25 TIILIGDPGLWKTWLEREIS 44 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~ 44 (782)
.|+|.|.+|+||||.++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 403
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.77 E-value=0.045 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|+|+|+.|+|||||++.+.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999987
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.76 E-value=0.044 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++.++|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999886
No 405
>PRK13947 shikimate kinase; Provisional
Probab=93.71 E-value=0.046 Score=51.56 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999987
No 406
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.71 E-value=0.14 Score=52.97 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=36.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHH
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAIS 76 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 76 (782)
..++|.|..|+|||+|+..+.+. . +-+.++++-+.+.. .+.++++++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~---~--~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKY---S--NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhC---C--CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 37899999999999999999987 2 23577888776654 4466666543
No 407
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.70 E-value=0.19 Score=53.69 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.+++.+.......+.|.|.||+|||+|.+++.+.
T Consensus 10 ~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~ 45 (364)
T PF05970_consen 10 FDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDY 45 (364)
T ss_pred HHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHH
Confidence 344455555555668899999999999999999887
No 408
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.70 E-value=0.05 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999887
No 409
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=0.74 Score=46.81 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcc
Q 039334 9 SQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~ 47 (782)
..-+++...+..++.+ -.-++|+.|+||+++|..+.+.-
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 4456778888787766 45689999999999999887763
No 410
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.69 E-value=0.21 Score=51.74 Aligned_cols=97 Identities=11% Similarity=0.022 Sum_probs=51.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcc-cccchhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKA-EKYSSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
.+++|+|..|+|||||.+.+.+... -+..+.+-+. +.-++.++.......-.....-. ...++.. ......
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~-~~r~~~ 143 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESP-LLRVKA 143 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCH-HHHHHH
Confidence 4789999999999999999988621 2333333333 33355555555544321100000 0000000 001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.+++. -++|..|+++||+-
T Consensus 144 ~~~a~~~AEyfr---~~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIAEYFR---DQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHH---HcCCCeEEEeccch
Confidence 234455666632 25999999999965
No 411
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.67 E-value=0.15 Score=54.72 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=51.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCch--hhhhhhhhhhhcccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDGK 101 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 101 (782)
..++|+|..|+|||||++.+.+. .+. ...++...-.+.-.+.++.++.+..-..+.+-. ...++. ........
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~---~~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~-~~~r~~a~ 215 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN---TDA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDES-PLMRRQAA 215 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC---CCC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCC-HHHHHHHH
Confidence 47899999999999999998876 211 122222222333345556655444321111000 000000 00011122
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
.....+.++++ -+++..|+++||+-.
T Consensus 216 ~~a~~iAEyfr---d~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTATAIAEYFR---DQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHH---HcCCCEEEeccchhH
Confidence 24445666632 258999999999653
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.62 E-value=0.21 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.++.++|.+|+||||.|..++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 458899999999999998888776
No 413
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.62 E-value=0.06 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 414
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.61 E-value=0.066 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHh
Q 039334 23 RSTIILIGDPGLWKTWLEREIS 44 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~ 44 (782)
...++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999999986
No 415
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.60 E-value=0.052 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.|+|+.|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999876
No 416
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.59 E-value=0.2 Score=54.33 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=55.6
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhccccc----ccccceEEEEEcccccchhHHHHHHHHhhcc-CCCchh--hhhhhhhh
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIA----SSSCYTTLWINKAEKYSSNLLEEAISRQALC-ESPNIE--EWEEQEEE 95 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~-~~~~~~--~~~~~~~~ 95 (782)
..++|.|-.|+|||+|| ..+.+...+. +.+-+.++++-+++..+...-+.+.+++-+. +..-+- ..++.. .
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~-~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA-G 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH-H
Confidence 36899999999999997 5566652211 1234567888888777543334444444331 110000 000000 0
Q ss_pred hhcccchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 96 EDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
...-.......+.|+++ -+++..|+|+||+-.
T Consensus 269 ~r~~Apy~a~tiAEYFr---d~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFM---NRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHH---HcCCCEEEEEcCchH
Confidence 01111223445555532 258999999999763
No 417
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.57 E-value=0.22 Score=53.88 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDED 99 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~ 99 (782)
-..++|+|..|+|||||++.+.+. . ..+.++...+.... ++.++.+.+...-.....-. ...++.. .....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~---~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p-~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRF---T--EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAP-LMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCH-HHHHH
Confidence 347899999999999999999875 1 23444444343322 44555555543321110000 0000000 00111
Q ss_pred cchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 100 GKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
.......+.|+++ -+++..|+++||+-.
T Consensus 242 a~~~a~aiAEyfr---d~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFR---DKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHH---HCCCCEEEEecchhH
Confidence 2223344666632 269999999999663
No 418
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.55 E-value=0.053 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.291 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|++|+|||||++.+.+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999987
No 419
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.53 E-value=0.12 Score=58.66 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
+++|-. +.++.+...+... +.+.++|++|+||||+|+.+.+. ....+++..+|..- ..-+...+++.+..+.+.
T Consensus 32 ~vigq~-~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~--l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 32 QVIGQE-HAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAEL--LPKEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HcCChH-HHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHH--cChHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 355655 6677777766554 36889999999999999999886 22344677788664 444667778888776554
No 420
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.49 E-value=0.19 Score=53.95 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.++|++|+|||++|+.+...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHh
Confidence 46889999999999999999976
No 421
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.46 E-value=0.06 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhccc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKV 48 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~ 48 (782)
.|.|+|..|+|||||.+.+.+.+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998743
No 422
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.45 E-value=0.42 Score=53.74 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=36.8
Q ss_pred hhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccc
Q 039334 3 SERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAE 64 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 64 (782)
++|-+ ..+.++.+.+.. ....-|-|+|..|+|||++|+.+++....... ..+.|.++.
T Consensus 189 iig~s-~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~---p~v~v~c~~ 248 (509)
T PRK05022 189 MIGQS-PAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADK---PLVYLNCAA 248 (509)
T ss_pred eeecC-HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCC---CeEEEEccc
Confidence 45555 555555555533 22335779999999999999999987322222 335555544
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.43 E-value=0.058 Score=63.14 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++.|+|+.|.||||+.+.+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 468999999999999999998765
No 424
>PRK05922 type III secretion system ATPase; Validated
Probab=93.42 E-value=0.23 Score=53.39 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=50.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
..++|+|..|+|||||.+.+.+. . +.+..+.+-++... .+.+.+.+.......+..-. ...++. .......
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~---~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~-~~~r~~a 231 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG---S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHET-APTKVIA 231 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc---C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCC-HHHHHHH
Confidence 46899999999999999999876 2 12333333333322 23444444433222110000 000000 0001112
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
......+.|+++ -+|+++|+++||+-.
T Consensus 232 ~~~a~tiAEyfr---d~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFR---DQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHH---HcCCCEEEeccchhH
Confidence 223445666632 259999999999763
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.42 E-value=0.2 Score=53.80 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..||.++|.+|+||||++.+++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998875
No 426
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.41 E-value=0.15 Score=55.97 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=50.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEE-EEccccc-chhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLW-INKAEKY-SSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~w-v~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
....|+|++|+|||||++.|.+... +.+-++.++ +-|.+.. .+.++.+.+--.+-.... +... .......
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~-----D~p~-~~~~~~a 488 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF-----DRPP-SDHTTVA 488 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECC-----CCCH-HHHHHHH
Confidence 3678999999999999999998621 123344333 3344433 344443333111111010 0000 0012223
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCC
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
.+...+.+++. -.++.+||++|++-
T Consensus 489 ~~ai~~Ae~fr---e~G~dVlillDSlT 513 (672)
T PRK12678 489 ELAIERAKRLV---ELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHH---HcCCCEEEEEeCch
Confidence 34445555522 26999999999866
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.40 E-value=0.073 Score=50.76 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..+|.|+|++|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999887
No 428
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.38 E-value=0.047 Score=29.10 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=6.3
Q ss_pred CcCEEeccCCCCCCCC
Q 039334 725 KLDLLDISNTGIREIP 740 (782)
Q Consensus 725 ~L~~L~l~~~~l~~lp 740 (782)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 429
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.35 E-value=0.11 Score=48.45 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=38.5
Q ss_pred hhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHH
Q 039334 4 ERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAIS 76 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 76 (782)
||-+ ..+.++.+.+.. ....-|-|+|..|+||+.+|+.+++....... ..+-|+.+. .+...+...++
T Consensus 2 iG~s-~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~---pfi~vnc~~-~~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGES-PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNG---PFISVNCAA-LPEELLESELF 71 (168)
T ss_dssp S--S-HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS----EEEEETTT-S-HHHHHHHHH
T ss_pred EeCC-HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccC---CeEEEehhh-hhcchhhhhhh
Confidence 5666 666666666633 12234569999999999999999997333223 334555442 23333434444
No 430
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.09 Score=60.13 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=34.2
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|.+ +|.++++..|......=-.++|.+|+|||++|.-++++
T Consensus 172 vIGRd-~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~r 214 (786)
T COG0542 172 VIGRD-EEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQR 214 (786)
T ss_pred CcChH-HHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHH
Confidence 46666 99999999996643333457899999999999888887
No 431
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.31 E-value=0.24 Score=53.35 Aligned_cols=103 Identities=9% Similarity=0.025 Sum_probs=58.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccc----------cccccceEEEEEcccccchhHHHHHHHHhhc-cCCCch--hhhh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVI----------ASSSCYTTLWINKAEKYSSNLLEEAISRQAL-CESPNI--EEWE 90 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~----------~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~-~~~~~~--~~~~ 90 (782)
..++|.|-+|+|||||+..+.+.... ++..-..++++-+.+.....+.+.+.+..-+ ...+-. ...+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 46899999999999999999877331 0011115677777887777776666666544 111000 0000
Q ss_pred hhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 91 EQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
+. .............+.+++.. -+++..|+++||+-
T Consensus 222 ~p-~~~R~~a~~~a~tiAEyfr~--~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DP-TIERIITPRLALTTAEYLAY--QCEKHVLVILTDMS 257 (466)
T ss_pred CC-HHHHHHHHhhhHHHHHHHHH--hcCCcEEEeccChH
Confidence 00 00011222334445566210 14899999999975
No 432
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.30 E-value=0.061 Score=49.65 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
|.++|++|+||||+|+.+.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 433
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.068 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+.|.|++|+|||||+++++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999998
No 434
>PRK05439 pantothenate kinase; Provisional
Probab=93.30 E-value=0.11 Score=53.33 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.-+|+|.|.+|+||||+|+.+..-
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999998774
No 435
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.30 E-value=0.1 Score=54.67 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=34.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|||-+ +.+..++-.+.+.+..-+.|.|..|+|||||++.+..-
T Consensus 5 ~ivgq~-~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 5 AIVGQD-EMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccHH-HHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 467777 66777766666655556779999999999999999765
No 436
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.29 E-value=0.068 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|+|+.|+||||+++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999987
No 437
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.28 E-value=0.23 Score=53.70 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
-.+++|.|..|+|||||++.+...... -..+++..-.+.-.+.++.+.+...-.....-. ...++. .......
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p-~~~r~~a 237 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRS-SIERAKA 237 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCC-HHHHHHH
Confidence 447899999999999999999876211 123344333344455665555544321110000 000000 0001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
......+.|+++ -+++..|+++||+-.
T Consensus 238 ~~~a~tiAEyfr---d~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFR---DRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHH---HcCCCEEEeccchhH
Confidence 334445666632 259999999999663
No 438
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.28 E-value=0.06 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 439
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.21 E-value=0.071 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+++.|+|+.|.||||+.+.+..-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4568999999999999999987654
No 440
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.20 E-value=0.064 Score=52.15 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 368999999999999999999854
No 441
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.19 E-value=0.097 Score=54.67 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=32.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.++.+.-.+.+.+..-+-+.|..|+||||+|+.+.+-
T Consensus 9 ~i~Gq~-~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 9 AIVGQE-EMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HhCCHH-HHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 466776 55666554444444556889999999999999998665
No 442
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.18 E-value=0.17 Score=53.79 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK 65 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 65 (782)
..++.|.|.+|+|||||+..++.. .. .....++|++....
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~-~a--~~g~~VlYvs~EEs 121 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAAR-LA--KRGGKVLYVSGEES 121 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH-HH--hcCCeEEEEECCcC
Confidence 348899999999999999999876 22 22246788876543
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.18 E-value=0.088 Score=53.50 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
.+++.|.|.+|+|||+++.++... .......++||+..+..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~---~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYE---GAREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---HHhcCCcEEEEEecCCH
Confidence 459999999999999999998887 33347889999876553
No 444
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.18 E-value=0.22 Score=49.91 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=52.7
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhcccccccccceE-EEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhc
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIASSSCYTT-LWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDE 98 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 98 (782)
..++|.|..|+|||+|| ..+.+. . .-+.+ +++-+.+.. .+.++.+.+...-..+..-+ ...++.. ....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~---~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~-~~r~ 143 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ---K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPA-PLQY 143 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh---c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCch-hHHH
Confidence 36899999999999996 556554 1 23444 666666654 45666666654321100000 0000000 0011
Q ss_pred ccchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 99 DGKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
........+.|++. -+++..|+|+||+-.
T Consensus 144 ~a~~~a~aiAE~fr---~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFM---DNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHH---HCCCCEEEEEcChHH
Confidence 11223455566632 258999999999763
No 445
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.17 E-value=0.077 Score=51.36 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|.|+|++|+||||+|+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999886
No 446
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.14 E-value=0.11 Score=53.75 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=29.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 71 (782)
+++.+.|.||+||||+|.+..-. ....-..+.=|+.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~---~A~~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALA---LARRGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH---HHHTTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHH---HhhCCCCeeEeecCCCccHHHH
Confidence 57889999999999999887665 1112234566665554444443
No 447
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.12 E-value=0.056 Score=50.50 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
|.++|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999987
No 448
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.11 E-value=0.29 Score=51.86 Aligned_cols=86 Identities=8% Similarity=-0.019 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhH-HHHHHHHhhccCCCchhhhhhhhhhhhccc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNL-LEEAISRQALCESPNIEEWEEQEEEEDEDG 100 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (782)
....|.|.|+.|.||||+.+.+.+. ........++. +.++..... -...++.+... ..+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~---i~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~ev---------------g~~~ 181 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDY---INKNAAGHIIT-IEDPIEYVHRNKRSLINQREV---------------GLDT 181 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHh---hCcCCCCEEEE-EcCChhhhccCccceEEcccc---------------CCCC
Confidence 3468999999999999999998875 11223344443 222211110 00000000000 1112
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGIN 131 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~ 131 (782)
......++.. ++...=.|++|.+.+.
T Consensus 182 ~~~~~~l~~~-----lr~~pd~i~vgEird~ 207 (343)
T TIGR01420 182 LSFANALRAA-----LREDPDVILIGEMRDL 207 (343)
T ss_pred cCHHHHHHHh-----hccCCCEEEEeCCCCH
Confidence 3345566666 6888899999999864
No 449
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.10 E-value=0.12 Score=49.54 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=27.9
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+..+.+++.... ...+.|+|+.|+||||+++.+..-
T Consensus 12 ~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 12 PLQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 4455555554443 458999999999999999998876
No 450
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.10 E-value=0.085 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|+.|+|.+|+||||+.+.+-+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 568999999999999999988776
No 451
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.08 E-value=0.22 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|..|+|||||++.+.+.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 347999999999999999998876
No 452
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.08 E-value=0.17 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 453
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.07 E-value=0.23 Score=53.58 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=56.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCc--hhhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPN--IEEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~ 100 (782)
..++|.|.+|+|||||+..+... ... .+-+.++++-+.+.. .+.++.+++...=.....- ....++. .......
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~-~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p-~~~R~~a 220 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINN-IAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEP-PGARMRV 220 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHH-HHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCC-HHHHHHH
Confidence 46899999999999999998877 111 222466777775544 4567777665431110000 0000000 0001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
......+.|+++. -+++..|+|+||+-.
T Consensus 221 ~~~a~tiAEyfrd--~~G~~VLll~DslTR 248 (461)
T TIGR01039 221 ALTGLTMAEYFRD--EQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHH--hcCCeeEEEecchhH
Confidence 2344555666211 058999999999763
No 454
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.05 E-value=0.17 Score=53.71 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=32.4
Q ss_pred hhhhhhhhHHHHHHHhhc---------C-----CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE---------D-----GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~---------~-----~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+|-+ +.++.+..++.. + ....|.++|++|+|||++|+.+...
T Consensus 17 IiGQe-~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 17 IIGQD-DAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cCCHH-HHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56666 667777766632 0 1347889999999999999999887
No 455
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.04 E-value=0.069 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.0
Q ss_pred EEEEcCCCchhHHHHHHHhhcc
Q 039334 26 IILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~~ 47 (782)
|.|.|.+|+|||||++.+++.-
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998873
No 456
>PRK13975 thymidylate kinase; Provisional
Probab=93.03 E-value=0.072 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999987
No 457
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.02 E-value=0.12 Score=53.23 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=36.8
Q ss_pred chhhhhhhhHHHHHHHhhc------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++-|++ +.++++++.+.. .+.+|+-++|+.|.||||||+.+.+-
T Consensus 62 ~~~G~~-~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 62 EFYGME-ETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccCcH-HHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 356777 889999998843 34678999999999999999999887
No 458
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.00 E-value=0.075 Score=50.37 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEE
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWIN 61 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 61 (782)
-.|++|+|++|.|||||.+-+..=+.+. ...|||.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~----~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD----SGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC----CceEEEC
Confidence 3489999999999999999998874442 3456765
No 459
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.00 E-value=0.23 Score=56.73 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=47.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
+++|-+ +.++.+...+.... .+.++|++|+||||+|+.+.+.-. ...|..++.+. ....+..++++.+..+++.
T Consensus 19 ~viG~~-~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 19 QVIGQE-EAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hccCHH-HHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 456666 66666666665542 555999999999999999998721 22333333222 2333456778888877665
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.99 E-value=0.28 Score=52.88 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
-..++|+|..|+|||||++.++... +. ...++...-.+...+.++.++.+..-+....-. ...++. .......
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~---~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s-~~~r~ra 230 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNA---KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDES-HLMQLRA 230 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC---CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCC-HHHHHHH
Confidence 3478999999999999999999872 21 122333322344566666665555422111000 000000 0001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
......+.++++ -+++..|+++||+-.
T Consensus 231 ~~~a~~iAEyfr---~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFR---DQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHH---HcCCcEEEEecchHH
Confidence 233445555532 258999999999764
No 461
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.96 E-value=0.16 Score=49.75 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++.|.|+.|.||||+.+.+...
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999884
No 462
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.33 Score=54.06 Aligned_cols=44 Identities=30% Similarity=0.347 Sum_probs=31.9
Q ss_pred chhhhhhhhHHHHHHHhhc----------CCce---EEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE----------DGRS---TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----------~~~~---vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+-|+. +.++.+.+.+.- -+.+ =|-++|++|.|||-||-++...
T Consensus 668 digg~~-~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~ 724 (952)
T KOG0735|consen 668 DIGGLF-EAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASN 724 (952)
T ss_pred ecccHH-HHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhh
Confidence 556666 666666666621 1222 3778999999999999999987
No 463
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.94 E-value=0.26 Score=52.57 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccc-cccceEEEEEcccccc--hhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIAS-SSCYTTLWINKAEKYS--SNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~ 81 (782)
..+|.++|+.|+||||.+.+++....... ..-..++-|+. +++. ..+-++...+.++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgv 234 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGI 234 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCc
Confidence 46899999999999999999887622111 11224455554 3332 22335555555544
No 464
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.94 E-value=0.13 Score=52.30 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
.++|.++|++|+||||.+.+++... . +. -..++.++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l-~-~~-g~~V~li~~ 108 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL-K-KQ-GKSVLLAAG 108 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-H-hc-CCEEEEEeC
Confidence 5689999999999999999988762 2 12 234566664
No 465
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.92 E-value=0.073 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|+|+.|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999987
No 466
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.89 E-value=0.091 Score=51.19 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....|.|+|++|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3557889999999999999999765
No 467
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.87 E-value=0.075 Score=49.63 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.8
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|+|+|..|+|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 3899999999999999999976
No 468
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.87 E-value=0.13 Score=53.63 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=30.6
Q ss_pred hhhhhhHHHHHHHhhc--------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 5 RVASSQKEKISELLKE--------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 5 ~~~~~~~~~l~~~l~~--------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++.+++++.+...+.. .....|.++|+.|+||||+++.+.+.
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555555555522 23458999999999999999999887
No 469
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.84 E-value=0.53 Score=54.77 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=29.0
Q ss_pred hhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ ..+.++.+.+.. ....-|-|+|..|+||+++|+++++.
T Consensus 327 l~g~s-~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 327 MPQDS-PQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred eEECC-HHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 44444 445555554432 11223679999999999999999987
No 470
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.84 E-value=0.17 Score=52.14 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH
Q 039334 6 VASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL 71 (782)
Q Consensus 6 ~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 71 (782)
|+.+....++.++..+ +.|.|.|++|+||||+|+.++.. ...+| +.|.++...+..++
T Consensus 49 f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~---l~~~~---~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 49 FDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAAR---LNWPC---VRVNLDSHVSRIDL 106 (327)
T ss_pred CCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHH---HCCCe---EEEEecCCCChhhc
Confidence 3434455666666543 36899999999999999999997 32222 45555555444443
No 471
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.81 E-value=0.095 Score=50.18 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=27.8
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK 65 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 65 (782)
++.|.|++|+|||++|..+...... .-..++|++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCC
Confidence 3678999999999999998776221 2245788886543
No 472
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.80 E-value=0.14 Score=56.69 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++.+|+|.|++|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 34568999999999999999999876
No 473
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.79 E-value=0.25 Score=53.47 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=56.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
..++|.|.+|+|||||+..+...... .+-+.++++-+.+.. .+.++.+++...-....+-. ...++. .......
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~--~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p-~~~r~~a 221 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEP-PGARLRV 221 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCC-HHHHHHH
Confidence 46899999999999999998776221 112456777775544 55777777665321110000 000000 0001112
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.++++. -+++.+|+++|++-
T Consensus 222 ~~~a~tiAEyfrd--~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTGLTMAEYFRD--VEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHH--hcCCceEEEecchH
Confidence 2334455666321 06899999999966
No 474
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.78 E-value=0.095 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|.+|+||||+|+.+.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 358899999999999999999987
No 475
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.77 E-value=0.27 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...|-|++..|.||||.|..+.-+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r 28 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR 28 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH
Confidence 457778888999999999998777
No 476
>PRK13948 shikimate kinase; Provisional
Probab=92.76 E-value=0.1 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999987
No 477
>PRK15453 phosphoribulokinase; Provisional
Probab=92.75 E-value=0.097 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|.|-+|+||||+|+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998864
No 478
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.67 E-value=0.31 Score=52.47 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=52.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDEDG 100 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~ 100 (782)
.+++|+|..|+|||||.+.+.+. .+ .+..+.+.+.... .+.++.++....-..+..-. ...++. .......
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~---~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~-~~~r~~a 211 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARY---TE--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADES-PLMRLRA 211 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC---CC--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCC-HHHHHHH
Confidence 47899999999999999988876 21 2333444444433 44555555443311100000 000000 0001122
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.++++ -++++.|+++||+-
T Consensus 212 ~~~a~tiAEyfr---~~G~~Vll~~Dslt 237 (411)
T TIGR03496 212 AFYATAIAEYFR---DQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHH---HCCCCEEEEEeChH
Confidence 334455666632 25999999999966
No 479
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.66 E-value=0.35 Score=52.77 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=56.0
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhcccccccccce-EEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhc
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIASSSCYT-TLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDE 98 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 98 (782)
..++|.|..|+|||||| ..+.+. . .-+. ++++-+++.. .+.++.+.+...=.....-+ ...++.. ....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q---~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~-~~r~ 236 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQ---K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPP-GLQY 236 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHh---c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCH-HHHH
Confidence 46899999999999996 467776 2 2354 6788787665 45666666665421111000 0000000 0011
Q ss_pred ccchhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 99 DGKKTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
........+.|+++ -+|+..|+|+||+-.
T Consensus 237 ~ap~~a~aiAEyfr---d~G~~VLlv~DdlTr 265 (497)
T TIGR03324 237 IAPYAATSIGEHFM---EQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHH---hCCCCEEEEEcChhH
Confidence 12223445666632 269999999999763
No 480
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.64 E-value=0.092 Score=47.33 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|..|+|||||.+.++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999999887
No 481
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.63 E-value=0.15 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++++|++|+||||++..++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 469999999999999999999887
No 482
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.63 E-value=0.15 Score=52.70 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHH
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEE 73 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 73 (782)
.+++.+.|.||+||||+|.+..-. .......++=|+.....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~---lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK---LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH---HHHcCCcEEEEEeCCCCchHhhhc
Confidence 468889999999999999995443 112224466776656656555433
No 483
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.61 E-value=0.092 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|+|+|++|+|||||-+.+..=
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999876
No 484
>PRK13946 shikimate kinase; Provisional
Probab=92.59 E-value=0.095 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.|.++|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999998
No 485
>PRK04182 cytidylate kinase; Provisional
Probab=92.57 E-value=0.092 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 486
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.52 E-value=0.16 Score=48.58 Aligned_cols=42 Identities=26% Similarity=0.314 Sum_probs=28.0
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||+|-+ +.+..+.-.... ..-+.++|++|+|||++|+.+-.=
T Consensus 4 dI~GQe-~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 4 DIVGQE-EAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CSSSTH-HHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhcCcH-HHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 677776 555554444333 357889999999999999998643
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.51 E-value=0.099 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++.|+|+.|.||||+++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999987
No 488
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.49 E-value=0.098 Score=46.78 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~ 47 (782)
+.|.++|..|+|||||++++-..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999998874
No 489
>PRK14527 adenylate kinase; Provisional
Probab=92.49 E-value=0.1 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 490
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.48 E-value=0.16 Score=49.27 Aligned_cols=44 Identities=23% Similarity=0.377 Sum_probs=31.3
Q ss_pred chhhhhhhhHH---HHHHHhhcC------CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKE---KISELLKED------GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~---~l~~~l~~~------~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||||=+ +.+. -|++.|.+. ..+-|-.+|++|.|||-+|+++.+.
T Consensus 122 dViGqE-eAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 122 DVIGQE-EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhchH-HHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 567766 3322 244555332 2456889999999999999999998
No 491
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.48 E-value=0.18 Score=58.20 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
.+++-|.|.+|+|||||+..++.... ..-..++|++....++.. .+++++.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~~-----~A~~lGv 110 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDPD-----YAKKLGV 110 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhHH-----HHHHcCC
Confidence 44777999999999999988665512 223567999988777743 5566655
No 492
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.43 E-value=0.46 Score=54.77 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc--hhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS--SNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~ 81 (782)
..||.++|+.|+||||.+.+++..... ......+..++. +.+. ..+-++...+.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gv 243 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTT-DSFRIGALEQLRIYGRILGV 243 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecC-cccchHHHHHHHHHHHhCCC
Confidence 359999999999999999999876222 111234455553 3333 34445555555554
No 493
>PLN02200 adenylate kinase family protein
Probab=92.42 E-value=0.11 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|++|+||||+|+.+.+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999876
No 494
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=92.41 E-value=0.67 Score=54.23 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 6 VASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 6 ~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+++++.+...+ . .+++.|.|.+|+||||+++.+.+.
T Consensus 324 l~~~Q~~Ai~~~~-~--~~~~iitGgpGTGKTt~l~~i~~~ 361 (720)
T TIGR01448 324 LSEEQKQALDTAI-Q--HKVVILTGGPGTGKTTITRAIIEL 361 (720)
T ss_pred CCHHHHHHHHHHH-h--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3334444444432 2 348889999999999999998776
No 495
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.41 E-value=0.087 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|++|+||||+|+.+.+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999887
No 496
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.37 E-value=1 Score=46.09 Aligned_cols=51 Identities=22% Similarity=0.107 Sum_probs=35.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
.++.|.|.+|+||||++..+...... ..-..++|+++..+ ..++.+.+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEcccC--HHHHHHHHHHH
Confidence 47889999999999999998776221 21346789887553 34455555444
No 497
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.35 E-value=0.11 Score=47.86 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++++|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999986
No 498
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.34 E-value=0.21 Score=49.53 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
.+++.|.|.+|+|||++|.++...... ..-+.+++|++..+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEPP 60 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS-H
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCCH
Confidence 448999999999999999987655122 113567899886655
No 499
>PRK13531 regulatory ATPase RavA; Provisional
Probab=92.34 E-value=0.14 Score=55.45 Aligned_cols=22 Identities=27% Similarity=0.650 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|-|.|++|+|||++|+.+...
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHH
Confidence 6889999999999999999986
No 500
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.32 E-value=0.14 Score=51.96 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=32.1
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.|+.++..+.+.+++. .....|.|.|+.|.||||+++++.+.
T Consensus 61 ~lg~~~~~~~~l~~~~~-~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 61 KLGLKPENLEIFRKLLE-KPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HcCCCHHHHHHHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 35677555666655553 34568999999999999999988765
Done!