Query 039334
Match_columns 782
No_of_seqs 323 out of 4699
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 14:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.5E-45 2.9E-49 409.5 16.9 312 4-358 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 8.3E-37 2.8E-41 346.3 15.4 291 4-349 131-435 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-33 4.6E-38 353.2 21.5 303 2-353 125-448 (1249)
4 4eco_A Uncharacterized protein 100.0 1.4E-30 4.7E-35 299.9 22.7 302 454-766 239-603 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 1.4E-29 4.7E-34 296.1 28.2 319 437-767 446-844 (876)
6 1o6v_A Internalin A; bacterial 100.0 7.5E-29 2.6E-33 275.4 31.7 346 392-768 45-393 (466)
7 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-30 5.6E-35 297.9 17.8 301 2-352 125-447 (591)
8 4ecn_A Leucine-rich repeat pro 100.0 2.8E-29 9.4E-34 293.6 27.2 341 414-765 444-866 (876)
9 4eco_A Uncharacterized protein 100.0 2E-29 6.8E-34 290.3 23.6 319 414-739 202-602 (636)
10 3rgz_A Protein brassinosteroid 100.0 3.9E-30 1.3E-34 303.2 17.9 362 391-768 245-722 (768)
11 3rgz_A Protein brassinosteroid 100.0 2.2E-29 7.5E-34 296.8 21.8 375 390-769 148-558 (768)
12 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-28 4.9E-33 283.3 28.0 373 390-770 53-541 (606)
13 1o6v_A Internalin A; bacterial 100.0 4.7E-28 1.6E-32 269.0 29.2 323 417-767 45-370 (466)
14 3t6q_A CD180 antigen; protein- 100.0 4.6E-28 1.6E-32 279.0 29.5 132 636-771 377-521 (606)
15 3t6q_A CD180 antigen; protein- 100.0 2.5E-27 8.5E-32 272.9 34.9 363 390-770 78-543 (606)
16 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-28 1.2E-32 280.1 27.1 356 390-764 77-559 (606)
17 4fmz_A Internalin; leucine ric 100.0 7.7E-28 2.6E-32 256.8 26.0 300 417-764 43-347 (347)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-27 5.8E-32 283.7 31.8 373 390-770 45-546 (844)
19 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-28 1.9E-32 274.9 25.2 356 390-764 47-511 (549)
20 4fmz_A Internalin; leucine ric 100.0 1.7E-27 5.9E-32 254.1 25.7 301 390-737 41-346 (347)
21 1ziw_A TOLL-like receptor 3; i 100.0 1E-26 3.5E-31 271.6 32.6 373 393-769 25-523 (680)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-27 8.7E-32 267.5 25.1 363 393-768 21-462 (520)
23 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-26 2.3E-30 264.6 36.2 372 392-770 72-580 (680)
24 2z63_A TOLL-like receptor 4, v 100.0 2.2E-27 7.6E-32 271.4 22.8 369 390-765 49-533 (570)
25 2z81_A CD282 antigen, TOLL-lik 100.0 9.2E-27 3.1E-31 264.9 27.2 359 393-770 26-493 (549)
26 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-26 1.5E-30 250.9 31.5 332 391-768 40-393 (457)
27 3bz5_A Internalin-J, INLJ; leu 100.0 2.6E-26 9E-31 252.7 29.6 308 414-766 38-355 (457)
28 3v47_A TOLL-like receptor 5B a 99.9 1.3E-26 4.5E-31 257.1 24.7 360 397-767 14-412 (455)
29 3o6n_A APL1; leucine-rich repe 99.9 1.4E-26 4.8E-31 251.1 22.4 297 417-764 44-353 (390)
30 1jl5_A Outer protein YOPM; leu 99.9 5E-25 1.7E-29 242.4 33.8 334 394-772 72-421 (454)
31 2z63_A TOLL-like receptor 4, v 99.9 3E-26 1E-30 262.0 24.9 370 393-770 28-514 (570)
32 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-25 4.6E-30 253.4 29.0 357 396-770 3-441 (520)
33 3j0a_A TOLL-like receptor 5; m 99.9 2.5E-25 8.5E-30 265.0 31.9 339 418-766 24-397 (844)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-25 1E-29 252.6 30.3 143 392-544 30-181 (562)
35 3oja_B Anopheles plasmodium-re 99.9 5.7E-26 1.9E-30 260.0 22.1 296 417-763 50-358 (597)
36 2id5_A Lingo-1, leucine rich r 99.9 4.2E-25 1.4E-29 246.4 27.6 304 421-737 14-333 (477)
37 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.5E-29 239.0 29.4 329 391-766 32-373 (454)
38 3v47_A TOLL-like receptor 5B a 99.9 4.1E-25 1.4E-29 245.0 24.6 332 393-737 30-408 (455)
39 3o6n_A APL1; leucine-rich repe 99.9 5.2E-25 1.8E-29 238.7 22.9 301 390-737 42-352 (390)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-24 5.8E-29 246.4 28.2 350 393-764 52-511 (562)
41 3oja_B Anopheles plasmodium-re 99.9 7.3E-25 2.5E-29 250.8 22.7 298 391-712 49-356 (597)
42 2id5_A Lingo-1, leucine rich r 99.9 1.9E-24 6.5E-29 241.0 24.3 284 418-714 32-333 (477)
43 4g8a_A TOLL-like receptor 4; l 99.9 7.3E-24 2.5E-28 245.6 26.5 374 393-773 52-565 (635)
44 1xku_A Decorin; proteoglycan, 99.9 2.9E-22 9.8E-27 211.8 26.3 279 419-761 32-330 (330)
45 4g8a_A TOLL-like receptor 4; l 99.9 2.3E-22 7.9E-27 233.0 23.6 349 418-771 52-539 (635)
46 2ft3_A Biglycan; proteoglycan, 99.9 5.2E-22 1.8E-26 210.0 22.7 289 418-735 33-331 (332)
47 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-21 2.1E-25 216.1 31.1 268 418-748 40-309 (622)
48 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-21 4.1E-26 207.2 22.1 277 439-761 33-331 (332)
49 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-21 1.4E-25 217.5 27.2 256 394-714 41-297 (622)
50 1xku_A Decorin; proteoglycan, 99.9 6.5E-20 2.2E-24 193.7 27.0 260 463-764 32-307 (330)
51 4fcg_A Uncharacterized protein 99.8 4.1E-20 1.4E-24 194.4 19.9 217 439-668 81-311 (328)
52 3zyj_A Leucine-rich repeat-con 99.8 1.3E-19 4.3E-24 199.5 24.6 242 419-671 44-292 (440)
53 3zyi_A Leucine-rich repeat-con 99.8 1.5E-19 5.1E-24 199.7 23.2 242 419-671 55-303 (452)
54 1ogq_A PGIP-2, polygalacturona 99.8 9.7E-21 3.3E-25 198.0 12.1 241 439-715 50-305 (313)
55 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 197.6 15.9 269 423-738 36-315 (353)
56 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.8E-24 190.3 19.1 222 392-616 80-315 (328)
57 1z7x_W Ribonuclease inhibitor; 99.8 3.7E-23 1.3E-27 229.7 -9.3 335 393-737 3-411 (461)
58 2z80_A TOLL-like receptor 2, v 99.8 2.4E-19 8.2E-24 191.2 19.4 265 461-766 30-317 (353)
59 1ogq_A PGIP-2, polygalacturona 99.8 1.8E-20 6.2E-25 196.0 9.6 239 419-693 51-306 (313)
60 3zyj_A Leucine-rich repeat-con 99.8 1.2E-18 4.1E-23 191.6 23.6 195 529-736 85-291 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.9E-23 192.5 22.5 196 529-737 96-303 (452)
62 2z66_A Variable lymphocyte rec 99.8 5.1E-19 1.8E-23 184.7 18.6 239 421-671 10-261 (306)
63 1ozn_A Reticulon 4 receptor; N 99.8 4.9E-19 1.7E-23 182.8 15.6 193 421-615 14-214 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.8 5.3E-20 1.8E-24 192.9 6.5 224 484-748 31-263 (317)
65 1z7x_W Ribonuclease inhibitor; 99.8 4.2E-22 1.4E-26 221.2 -10.2 336 418-765 3-413 (461)
66 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.2E-23 180.0 16.5 234 442-712 10-259 (306)
67 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-18 8.3E-23 177.5 15.6 171 442-616 14-191 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.8 5.2E-19 1.8E-23 185.4 8.0 229 489-763 12-250 (317)
69 3oja_A Leucine-rich immune mol 99.8 1.7E-18 5.7E-23 192.2 11.2 220 488-748 35-263 (487)
70 2o6q_A Variable lymphocyte rec 99.7 9.4E-17 3.2E-21 164.0 21.9 196 418-615 16-218 (270)
71 3ogk_B Coronatine-insensitive 99.7 5.4E-20 1.8E-24 211.1 -3.2 360 391-766 110-529 (592)
72 3oja_A Leucine-rich immune mol 99.7 6.2E-18 2.1E-22 187.7 12.7 210 508-763 33-250 (487)
73 1wwl_A Monocyte differentiatio 99.7 1.7E-18 5.9E-23 181.0 6.4 239 459-737 40-309 (312)
74 1wwl_A Monocyte differentiatio 99.7 1.1E-18 3.8E-23 182.4 5.0 243 482-765 38-311 (312)
75 1h6u_A Internalin H; cell adhe 99.7 4.5E-17 1.5E-21 169.6 16.9 193 417-618 40-233 (308)
76 4ay9_X Follicle-stimulating ho 99.7 6.3E-17 2.1E-21 172.0 18.0 214 487-710 30-255 (350)
77 1h6u_A Internalin H; cell adhe 99.7 3.5E-17 1.2E-21 170.4 15.4 197 528-742 37-235 (308)
78 1p9a_G Platelet glycoprotein I 99.7 2.3E-16 7.8E-21 162.6 20.0 198 414-615 6-208 (290)
79 4ay9_X Follicle-stimulating ho 99.7 2.2E-16 7.4E-21 167.8 20.2 234 421-667 12-255 (350)
80 3ogk_B Coronatine-insensitive 99.7 2E-19 7E-24 206.2 -4.2 339 412-764 106-502 (592)
81 2xwt_C Thyrotropin receptor; s 99.7 1.5E-16 5.1E-21 159.4 16.1 202 430-646 23-237 (239)
82 2z62_A TOLL-like receptor 4, v 99.7 2.4E-16 8.4E-21 161.6 17.6 214 426-671 15-237 (276)
83 2o6q_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 155.7 22.1 173 439-615 16-194 (270)
84 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 6E-21 158.9 14.6 193 463-689 32-237 (239)
85 3rfs_A Internalin B, repeat mo 99.7 3.1E-16 1.1E-20 160.3 15.5 191 417-616 40-236 (272)
86 1p9a_G Platelet glycoprotein I 99.7 2.1E-15 7.1E-20 155.4 20.9 174 437-615 8-185 (290)
87 2z62_A TOLL-like receptor 4, v 99.7 7.7E-16 2.6E-20 157.8 17.3 196 462-691 28-237 (276)
88 3rfs_A Internalin B, repeat mo 99.7 7.6E-16 2.6E-20 157.4 15.8 185 424-613 25-216 (272)
89 2p1m_B Transport inhibitor res 99.7 2E-19 6.9E-24 206.4 -13.3 332 391-737 103-519 (594)
90 4glp_A Monocyte differentiatio 99.6 8.8E-16 3E-20 160.2 9.1 127 417-543 63-208 (310)
91 2p1m_B Transport inhibitor res 99.6 1.9E-18 6.5E-23 198.3 -12.6 331 392-735 129-542 (594)
92 3m19_A Variable lymphocyte rec 99.6 2.3E-14 8E-19 144.4 18.5 152 419-572 15-170 (251)
93 1h6t_A Internalin B; cell adhe 99.6 7E-15 2.4E-19 151.6 14.5 168 417-615 45-213 (291)
94 3m19_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 143.2 19.3 174 439-616 14-193 (251)
95 4glp_A Monocyte differentiatio 99.6 8E-15 2.7E-19 152.9 14.7 104 655-765 194-309 (310)
96 1h6t_A Internalin B; cell adhe 99.6 9.8E-15 3.3E-19 150.5 14.5 170 391-571 44-214 (291)
97 3cvr_A Invasion plasmid antige 99.6 6.8E-14 2.3E-18 156.4 20.8 177 558-764 60-244 (571)
98 1m9s_A Internalin B; cell inva 99.6 2.6E-14 8.8E-19 161.7 15.5 167 417-591 42-209 (605)
99 2ast_B S-phase kinase-associat 99.5 6.1E-16 2.1E-20 163.7 0.0 246 463-771 48-314 (336)
100 1m9s_A Internalin B; cell inva 99.5 2.6E-14 8.8E-19 161.7 13.3 172 391-573 41-213 (605)
101 3cvr_A Invasion plasmid antige 99.5 1.3E-13 4.3E-18 154.2 18.4 180 419-618 60-246 (571)
102 2ast_B S-phase kinase-associat 99.5 8.8E-16 3E-20 162.5 0.9 213 395-612 49-282 (336)
103 2ca6_A RAN GTPase-activating p 99.5 2.5E-16 8.6E-21 170.0 -5.9 180 437-617 30-259 (386)
104 2o6s_A Variable lymphocyte rec 99.5 2.6E-13 8.9E-18 132.5 14.9 144 422-567 11-158 (208)
105 4ezg_A Putative uncharacterize 99.5 1.6E-13 5.4E-18 132.7 13.0 149 437-614 42-193 (197)
106 3goz_A Leucine-rich repeat-con 99.5 5.9E-15 2E-19 157.6 2.3 240 491-737 2-297 (362)
107 4ezg_A Putative uncharacterize 99.5 3.7E-13 1.3E-17 130.0 13.4 149 416-570 42-194 (197)
108 1xeu_A Internalin C; cellular 99.5 7.1E-14 2.4E-18 141.6 8.4 168 417-616 18-186 (263)
109 3goz_A Leucine-rich repeat-con 99.5 1.7E-14 5.8E-19 154.0 3.4 170 445-616 4-210 (362)
110 2ca6_A RAN GTPase-activating p 99.4 9.7E-15 3.3E-19 157.5 0.7 178 391-570 30-257 (386)
111 1xeu_A Internalin C; cellular 99.4 2.8E-13 9.5E-18 137.2 11.3 168 393-572 19-187 (263)
112 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 129.1 16.1 147 421-570 22-172 (229)
113 2o6s_A Variable lymphocyte rec 99.4 9.2E-13 3.2E-17 128.5 14.3 166 442-617 10-180 (208)
114 2v9t_B SLIT homolog 2 protein 99.4 1.3E-12 4.4E-17 128.5 14.4 146 422-569 15-164 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.9E-17 128.8 13.5 146 422-569 15-165 (220)
116 1w5s_A Origin recognition comp 99.4 9.1E-12 3.1E-16 135.5 21.7 298 2-332 23-372 (412)
117 2xot_A Amphoterin-induced prot 99.4 1.2E-12 4.1E-17 139.5 12.4 167 421-589 21-199 (361)
118 3e6j_A Variable lymphocyte rec 99.4 8.7E-12 3E-16 123.4 16.2 124 636-763 41-172 (229)
119 2qen_A Walker-type ATPase; unk 99.4 3.2E-11 1.1E-15 128.0 21.1 279 3-331 14-333 (350)
120 2v9t_B SLIT homolog 2 protein 99.3 8.6E-12 2.9E-16 122.5 14.5 128 442-573 14-144 (220)
121 2xot_A Amphoterin-induced prot 99.3 4.8E-12 1.6E-16 134.8 11.0 171 441-615 20-202 (361)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 1.5E-11 5.1E-16 120.8 13.7 148 442-616 14-167 (220)
123 2fna_A Conserved hypothetical 99.3 1.9E-10 6.3E-15 122.4 20.5 277 3-332 15-342 (357)
124 1dce_A Protein (RAB geranylger 99.3 4.4E-15 1.5E-19 166.9 -17.2 103 636-741 442-550 (567)
125 2ell_A Acidic leucine-rich nuc 99.2 3.4E-11 1.2E-15 112.9 10.1 122 418-542 24-157 (168)
126 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.5E-16 114.6 8.4 133 437-573 22-163 (168)
127 3sb4_A Hypothetical leucine ri 99.2 3.5E-12 1.2E-16 134.0 3.5 91 657-751 225-325 (329)
128 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.3E-15 111.5 13.3 122 421-543 13-137 (193)
129 2v1u_A Cell division control p 99.2 1.1E-09 3.9E-14 117.7 22.4 295 2-331 20-351 (387)
130 2qby_B CDC6 homolog 3, cell di 99.2 7.8E-10 2.7E-14 118.9 20.4 286 2-331 21-339 (384)
131 1w8a_A SLIT protein; signaling 99.2 1.2E-10 4.1E-15 111.7 11.6 122 421-543 11-137 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.4E-16 114.8 6.4 125 416-543 17-151 (176)
133 2je0_A Acidic leucine-rich nuc 99.2 3.4E-11 1.2E-15 110.3 6.8 120 418-540 17-148 (149)
134 1njg_A DNA polymerase III subu 99.1 8.7E-10 3E-14 110.3 17.5 198 2-223 24-231 (250)
135 1fnn_A CDC6P, cell division co 99.1 3.9E-09 1.3E-13 113.6 23.2 288 2-332 18-352 (389)
136 2qby_A CDC6 homolog 1, cell di 99.1 1.7E-09 5.8E-14 116.3 19.6 294 2-331 21-348 (386)
137 2o6r_A Variable lymphocyte rec 99.1 7.5E-10 2.6E-14 104.6 13.7 122 421-543 10-135 (177)
138 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.4E-15 122.9 8.3 74 654-731 246-328 (329)
139 2chg_A Replication factor C sm 99.1 4.3E-09 1.5E-13 103.5 19.6 181 2-223 18-207 (226)
140 2wfh_A SLIT homolog 2 protein 99.1 9.1E-10 3.1E-14 105.5 13.5 123 442-569 13-138 (193)
141 4b8c_D Glucose-repressible alc 99.1 3.6E-11 1.2E-15 139.5 4.4 104 437-543 222-327 (727)
142 1w8a_A SLIT protein; signaling 99.1 7E-10 2.4E-14 106.3 11.9 126 441-570 10-139 (192)
143 2o6r_A Variable lymphocyte rec 99.1 1.6E-09 5.6E-14 102.3 14.0 127 440-570 8-137 (177)
144 2je0_A Acidic leucine-rich nuc 99.0 2.1E-10 7E-15 105.1 7.1 108 461-571 16-127 (149)
145 4fdw_A Leucine rich hypothetic 99.0 9.7E-09 3.3E-13 110.1 19.9 249 462-763 113-383 (401)
146 4fs7_A Uncharacterized protein 99.0 4.2E-09 1.4E-13 113.4 16.9 91 655-751 294-392 (394)
147 1a9n_A U2A', U2A'; complex (nu 99.0 3.6E-10 1.2E-14 106.7 7.1 85 457-543 14-99 (176)
148 4fdw_A Leucine rich hypothetic 99.0 2.2E-08 7.6E-13 107.3 20.9 229 463-736 136-382 (401)
149 1sxj_B Activator 1 37 kDa subu 99.0 1.5E-08 5.2E-13 105.9 18.3 180 2-222 22-212 (323)
150 1dce_A Protein (RAB geranylger 99.0 2E-09 6.8E-14 120.9 11.6 148 412-563 403-566 (567)
151 4b8c_D Glucose-repressible alc 98.9 5.9E-10 2E-14 129.3 7.1 117 409-527 215-334 (727)
152 3g39_A Variable lymphocyte rec 98.9 4E-09 1.4E-13 98.7 11.0 102 420-522 11-115 (170)
153 2r9u_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 98.7 11.2 101 421-522 15-118 (174)
154 2r9u_A Variable lymphocyte rec 98.8 1.4E-08 4.7E-13 95.3 11.5 102 661-766 15-121 (174)
155 1ds9_A Outer arm dynein; leuci 98.8 2.5E-11 8.4E-16 117.2 -7.7 109 413-524 43-155 (198)
156 3g39_A Variable lymphocyte rec 98.8 1.6E-08 5.6E-13 94.5 11.7 100 661-764 12-116 (170)
157 1iqp_A RFCS; clamp loader, ext 98.8 8.4E-08 2.9E-12 100.3 16.9 181 2-223 26-215 (327)
158 1hqc_A RUVB; extended AAA-ATPa 98.7 2.4E-07 8.2E-12 96.7 17.6 177 2-223 13-214 (324)
159 1ds9_A Outer arm dynein; leuci 98.7 5.4E-11 1.9E-15 114.8 -10.8 61 457-520 43-104 (198)
160 4fs7_A Uncharacterized protein 98.7 4.5E-07 1.5E-11 97.4 18.3 294 437-759 69-375 (394)
161 3bos_A Putative DNA replicatio 98.6 1.4E-06 4.9E-11 86.4 17.7 162 9-220 38-217 (242)
162 2chq_A Replication factor C sm 98.6 7.2E-07 2.5E-11 92.8 15.4 178 2-221 18-205 (319)
163 4gt6_A Cell surface protein; l 98.6 3E-06 1E-10 90.9 20.5 271 440-734 65-367 (394)
164 1jr3_A DNA polymerase III subu 98.5 1.7E-06 5.7E-11 92.2 16.5 195 2-220 17-221 (373)
165 1sxj_A Activator 1 95 kDa subu 98.5 3.3E-06 1.1E-10 93.7 17.8 187 2-221 40-254 (516)
166 3h4m_A Proteasome-activating n 98.4 2.2E-06 7.6E-11 87.5 14.2 178 2-217 18-228 (285)
167 1jbk_A CLPB protein; beta barr 98.4 1.1E-06 3.7E-11 83.8 9.8 44 2-46 23-66 (195)
168 1sxj_D Activator 1 41 kDa subu 98.4 5.2E-06 1.8E-10 87.6 16.0 188 2-220 38-235 (353)
169 2ifg_A High affinity nerve gro 98.3 9.2E-07 3.2E-11 93.2 9.5 96 424-520 14-114 (347)
170 3te6_A Regulatory protein SIR3 98.3 2.8E-05 9.7E-10 79.2 19.5 165 4-191 23-210 (318)
171 2ifg_A High affinity nerve gro 98.3 1.1E-06 3.8E-11 92.6 9.4 98 444-544 13-115 (347)
172 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.6E-05 5.4E-10 79.9 17.2 175 2-214 7-215 (262)
173 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.7E-05 9.2E-10 80.6 19.0 182 2-220 13-223 (322)
174 1sxj_E Activator 1 40 kDa subu 98.3 1E-05 3.5E-10 85.4 15.3 95 118-220 133-237 (354)
175 3u61_B DNA polymerase accessor 98.3 3.1E-05 1E-09 80.5 18.5 168 2-217 27-213 (324)
176 3pvs_A Replication-associated 98.2 8.8E-06 3E-10 87.9 14.4 168 2-220 27-215 (447)
177 3un9_A NLR family member X1; l 98.2 1.6E-08 5.4E-13 107.4 -7.0 149 578-737 71-252 (372)
178 3d8b_A Fidgetin-like protein 1 98.2 4.1E-05 1.4E-09 80.5 19.0 182 2-221 85-296 (357)
179 4gt6_A Cell surface protein; l 98.2 3.6E-05 1.2E-09 82.4 18.7 255 457-735 109-389 (394)
180 2ra8_A Uncharacterized protein 98.2 3.8E-07 1.3E-11 95.8 2.9 12 577-588 137-148 (362)
181 2z4s_A Chromosomal replication 98.2 3.1E-05 1.1E-09 83.7 17.4 167 12-217 118-303 (440)
182 3eie_A Vacuolar protein sortin 98.2 2.6E-05 9E-10 80.8 16.1 179 2-219 19-227 (322)
183 4b4t_J 26S protease regulatory 98.2 2.6E-05 8.9E-10 81.5 15.9 169 2-213 149-354 (405)
184 1a5t_A Delta prime, HOLB; zinc 98.2 4.1E-05 1.4E-09 79.8 17.3 165 9-218 9-203 (334)
185 4h09_A Hypothetical leucine ri 98.2 0.00016 5.3E-09 77.0 22.1 81 654-739 259-347 (379)
186 4h09_A Hypothetical leucine ri 98.2 0.00012 4.2E-09 77.8 21.3 81 655-740 237-325 (379)
187 3b9p_A CG5977-PA, isoform A; A 98.2 7.1E-05 2.4E-09 76.7 18.6 178 2-217 22-230 (297)
188 4b4t_L 26S protease subunit RP 98.1 2.6E-05 9E-10 82.9 15.1 169 2-213 182-387 (437)
189 3pfi_A Holliday junction ATP-d 98.1 7.4E-05 2.5E-09 78.1 18.2 173 2-220 30-227 (338)
190 1sxj_C Activator 1 40 kDa subu 98.1 5E-05 1.7E-09 79.4 16.8 172 3-216 27-208 (340)
191 2zan_A Vacuolar protein sortin 98.1 9.9E-05 3.4E-09 80.0 18.8 181 2-219 135-344 (444)
192 1d2n_A N-ethylmaleimide-sensit 98.1 4.4E-05 1.5E-09 77.1 15.1 160 22-222 63-245 (272)
193 2qp9_X Vacuolar protein sortin 98.1 4.5E-05 1.5E-09 80.1 15.5 180 2-220 52-261 (355)
194 4b4t_H 26S protease regulatory 98.0 4E-05 1.4E-09 81.1 13.4 168 2-212 210-414 (467)
195 4b4t_M 26S protease regulatory 98.0 2E-05 6.7E-10 83.8 11.0 168 2-212 182-386 (434)
196 2p65_A Hypothetical protein PF 98.0 2.3E-05 7.8E-10 74.0 10.2 44 2-46 23-66 (187)
197 4b4t_K 26S protease regulatory 98.0 5.5E-05 1.9E-09 80.3 14.0 44 2-46 173-229 (428)
198 4b4t_I 26S protease regulatory 98.0 3.7E-05 1.3E-09 80.6 12.2 168 2-212 183-387 (437)
199 3cf0_A Transitional endoplasmi 98.0 3.9E-05 1.3E-09 78.6 11.9 173 2-215 16-223 (301)
200 2w58_A DNAI, primosome compone 98.0 1.7E-05 5.9E-10 76.1 8.7 50 10-62 37-90 (202)
201 3vfd_A Spastin; ATPase, microt 97.9 0.00011 3.6E-09 78.5 15.5 179 2-218 116-324 (389)
202 3uk6_A RUVB-like 2; hexameric 97.9 0.00012 4.2E-09 77.5 15.7 46 172-217 252-300 (368)
203 3un9_A NLR family member X1; l 97.9 8.7E-07 3E-11 93.9 -2.0 148 394-543 73-250 (372)
204 1l8q_A Chromosomal replication 97.9 0.00022 7.5E-09 74.0 16.4 161 11-215 23-203 (324)
205 3ec2_A DNA replication protein 97.8 3.5E-05 1.2E-09 72.3 8.1 24 23-46 38-61 (180)
206 1lv7_A FTSH; alpha/beta domain 97.8 0.00029 1E-08 70.3 14.8 44 2-46 13-68 (257)
207 3syl_A Protein CBBX; photosynt 97.8 0.00012 4.1E-09 75.4 11.5 44 2-46 32-90 (309)
208 2gno_A DNA polymerase III, gam 97.7 0.00031 1.1E-08 71.6 13.7 143 9-192 4-152 (305)
209 2ra8_A Uncharacterized protein 97.7 1.9E-05 6.6E-10 82.8 4.5 165 598-765 135-322 (362)
210 3hu3_A Transitional endoplasmi 97.6 0.00031 1E-08 76.6 13.0 176 2-217 205-412 (489)
211 3e4g_A ATP synthase subunit S, 97.6 1.2E-05 4.1E-10 73.9 1.6 32 636-668 62-95 (176)
212 3e4g_A ATP synthase subunit S, 97.6 4.2E-05 1.4E-09 70.3 4.2 84 440-523 62-153 (176)
213 2ce7_A Cell division protein F 97.6 0.00051 1.7E-08 74.2 13.2 174 2-213 17-221 (476)
214 3n70_A Transport activator; si 97.6 0.00013 4.6E-09 65.5 7.2 44 2-46 2-47 (145)
215 3co5_A Putative two-component 97.5 0.00018 6.1E-09 64.5 7.3 44 2-46 5-50 (143)
216 1qvr_A CLPB protein; coiled co 97.5 0.00051 1.7E-08 81.0 13.2 44 2-46 171-214 (854)
217 2kjq_A DNAA-related protein; s 97.5 0.00026 9E-09 63.7 8.4 25 22-46 35-59 (149)
218 1ofh_A ATP-dependent HSL prote 97.4 0.0016 5.4E-08 66.9 14.7 44 2-46 16-73 (310)
219 2r62_A Cell division protease 97.4 9E-05 3.1E-09 74.6 4.7 44 2-46 12-67 (268)
220 3cf2_A TER ATPase, transitiona 97.4 0.00035 1.2E-08 80.0 9.7 172 2-213 205-407 (806)
221 3t15_A Ribulose bisphosphate c 97.4 0.002 6.7E-08 65.5 14.4 23 24-46 37-59 (293)
222 2qgz_A Helicase loader, putati 97.3 0.00038 1.3E-08 71.3 7.6 36 11-46 137-175 (308)
223 3pxg_A Negative regulator of g 97.2 0.0014 4.9E-08 71.3 11.4 44 2-46 181-224 (468)
224 1ixz_A ATP-dependent metallopr 97.2 0.0036 1.2E-07 62.1 13.2 21 26-46 52-72 (254)
225 4fcw_A Chaperone protein CLPB; 97.1 0.0019 6.6E-08 66.3 11.3 44 2-46 18-70 (311)
226 1iy2_A ATP-dependent metallopr 97.1 0.0046 1.6E-07 62.3 13.7 21 26-46 76-96 (278)
227 2x8a_A Nuclear valosin-contain 97.1 0.0045 1.5E-07 62.1 13.4 44 2-46 11-67 (274)
228 3m6a_A ATP-dependent protease 97.1 0.0042 1.4E-07 68.9 14.4 44 2-46 82-131 (543)
229 3rw6_A Nuclear RNA export fact 97.1 0.00033 1.1E-08 69.5 4.5 63 460-523 168-234 (267)
230 2c9o_A RUVB-like 1; hexameric 97.1 0.0053 1.8E-07 66.7 14.3 48 172-219 359-409 (456)
231 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0028 9.7E-08 68.8 12.0 44 2-46 32-87 (499)
232 1in4_A RUVB, holliday junction 97.1 0.011 3.8E-07 61.2 16.0 47 172-218 173-221 (334)
233 1r6b_X CLPA protein; AAA+, N-t 97.0 0.005 1.7E-07 71.8 14.4 44 2-46 187-230 (758)
234 2bjv_A PSP operon transcriptio 96.9 0.0072 2.5E-07 60.3 13.0 44 2-46 7-52 (265)
235 1ypw_A Transitional endoplasmi 96.9 0.0033 1.1E-07 73.2 11.5 44 2-46 205-261 (806)
236 3pxi_A Negative regulator of g 96.9 0.0034 1.2E-07 73.1 11.6 44 2-46 181-224 (758)
237 1io0_A Tropomodulin; LRR prote 96.9 7.2E-05 2.5E-09 70.5 -2.2 109 655-765 33-166 (185)
238 1io0_A Tropomodulin; LRR prote 96.9 0.00019 6.3E-09 67.6 0.5 12 417-428 35-46 (185)
239 3rw6_A Nuclear RNA export fact 96.8 0.00095 3.2E-08 66.2 5.3 75 676-752 168-256 (267)
240 1ojl_A Transcriptional regulat 96.8 0.0036 1.2E-07 63.8 9.5 44 2-46 3-48 (304)
241 3pxi_A Negative regulator of g 96.8 0.0027 9.4E-08 73.9 9.6 44 2-46 492-544 (758)
242 3cf2_A TER ATPase, transitiona 96.2 0.0019 6.4E-08 74.1 3.2 44 2-46 478-534 (806)
243 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0057 2E-07 61.6 5.2 23 24-46 124-146 (331)
244 2cvh_A DNA repair and recombin 96.0 0.013 4.5E-07 56.4 7.6 43 24-72 21-63 (220)
245 1um8_A ATP-dependent CLP prote 95.9 0.0098 3.4E-07 62.8 6.7 23 24-46 73-95 (376)
246 2p5t_B PEZT; postsegregational 95.5 0.0085 2.9E-07 59.3 4.0 46 1-46 1-55 (253)
247 1jr3_D DNA polymerase III, del 95.4 0.29 1E-05 50.6 16.0 161 13-219 8-184 (343)
248 3hr8_A Protein RECA; alpha and 95.4 0.017 6E-07 59.6 6.1 44 23-69 61-104 (356)
249 3ice_A Transcription terminati 95.4 0.0089 3E-07 61.5 3.7 98 23-130 174-272 (422)
250 3c8u_A Fructokinase; YP_612366 95.3 0.0077 2.6E-07 57.6 3.1 36 11-46 8-45 (208)
251 1g5t_A COB(I)alamin adenosyltr 95.3 0.045 1.5E-06 50.9 7.8 39 23-64 28-66 (196)
252 1r6b_X CLPA protein; AAA+, N-t 95.2 0.12 4.1E-06 60.0 13.4 44 2-46 459-511 (758)
253 1rz3_A Hypothetical protein rb 95.2 0.016 5.6E-07 54.9 5.0 38 9-46 5-45 (201)
254 2ga8_A Hypothetical 39.9 kDa p 95.1 0.019 6.3E-07 58.8 5.3 37 10-46 7-47 (359)
255 2zr9_A Protein RECA, recombina 94.9 0.029 9.9E-07 58.1 6.2 43 23-68 61-103 (349)
256 2hf9_A Probable hydrogenase ni 94.9 0.021 7.1E-07 55.3 4.9 37 10-46 25-61 (226)
257 1fx0_B ATP synthase beta chain 94.9 0.038 1.3E-06 58.9 7.0 53 24-78 166-219 (498)
258 3kb2_A SPBC2 prophage-derived 94.9 0.012 4.2E-07 54.0 3.0 23 24-46 2-24 (173)
259 1qvr_A CLPB protein; coiled co 94.8 0.013 4.6E-07 68.9 3.8 43 3-46 560-611 (854)
260 1xp8_A RECA protein, recombina 94.8 0.035 1.2E-06 57.8 6.4 43 24-69 75-117 (366)
261 1qhx_A CPT, protein (chloramph 94.8 0.014 4.7E-07 54.1 3.0 23 24-46 4-26 (178)
262 3lw7_A Adenylate kinase relate 94.8 0.013 4.5E-07 54.0 2.9 22 24-46 2-23 (179)
263 2wsm_A Hydrogenase expression/ 94.8 0.019 6.6E-07 55.3 4.1 38 9-46 16-53 (221)
264 3io5_A Recombination and repai 94.8 0.042 1.5E-06 55.1 6.5 51 25-81 30-80 (333)
265 2ck3_D ATP synthase subunit be 94.7 0.042 1.4E-06 58.3 6.8 54 23-78 153-207 (482)
266 1zp6_A Hypothetical protein AT 94.7 0.017 5.8E-07 54.2 3.5 24 23-46 9-32 (191)
267 1kgd_A CASK, peripheral plasma 94.7 0.015 5.1E-07 54.0 3.1 23 24-46 6-28 (180)
268 1odf_A YGR205W, hypothetical 3 94.7 0.027 9.1E-07 56.7 5.0 25 22-46 30-54 (290)
269 4akg_A Glutathione S-transfera 94.7 0.96 3.3E-05 58.9 20.2 60 13-78 1258-1317(2695)
270 3vaa_A Shikimate kinase, SK; s 94.6 0.016 5.3E-07 55.0 3.0 24 23-46 25-48 (199)
271 1kag_A SKI, shikimate kinase I 94.5 0.015 5.3E-07 53.5 2.7 23 24-46 5-27 (173)
272 1ly1_A Polynucleotide kinase; 94.5 0.019 6.6E-07 53.2 3.3 22 24-45 3-24 (181)
273 4eun_A Thermoresistant glucoki 94.5 0.019 6.6E-07 54.3 3.3 25 22-46 28-52 (200)
274 1gvn_B Zeta; postsegregational 94.4 0.029 1E-06 56.5 4.6 24 23-46 33-56 (287)
275 3trf_A Shikimate kinase, SK; a 94.4 0.019 6.4E-07 53.6 3.0 24 23-46 5-28 (185)
276 3uie_A Adenylyl-sulfate kinase 94.4 0.024 8.3E-07 53.7 3.8 26 21-46 23-48 (200)
277 3a00_A Guanylate kinase, GMP k 94.2 0.02 6.9E-07 53.5 2.7 23 24-46 2-24 (186)
278 3t61_A Gluconokinase; PSI-biol 94.2 0.019 6.6E-07 54.4 2.6 24 23-46 18-41 (202)
279 1knq_A Gluconate kinase; ALFA/ 94.2 0.025 8.6E-07 52.2 3.2 24 23-46 8-31 (175)
280 3iij_A Coilin-interacting nucl 94.1 0.023 7.8E-07 52.7 2.9 24 23-46 11-34 (180)
281 3tr0_A Guanylate kinase, GMP k 94.1 0.023 8E-07 53.9 3.0 23 24-46 8-30 (205)
282 1ye8_A Protein THEP1, hypothet 94.1 0.025 8.5E-07 52.4 3.1 23 25-47 2-24 (178)
283 1sky_E F1-ATPase, F1-ATP synth 94.1 0.064 2.2E-06 57.1 6.5 50 25-76 153-203 (473)
284 2r44_A Uncharacterized protein 94.1 0.03 1E-06 57.9 4.0 42 2-46 28-69 (331)
285 3tau_A Guanylate kinase, GMP k 94.1 0.028 9.5E-07 53.6 3.4 24 23-46 8-31 (208)
286 2orw_A Thymidine kinase; TMTK, 94.1 0.047 1.6E-06 50.8 4.9 23 24-46 4-26 (184)
287 2b8t_A Thymidine kinase; deoxy 94.1 0.049 1.7E-06 52.2 5.1 25 22-46 11-35 (223)
288 1nks_A Adenylate kinase; therm 94.1 0.025 8.5E-07 53.1 3.1 23 24-46 2-24 (194)
289 1u94_A RECA protein, recombina 94.1 0.057 2E-06 55.9 6.0 44 23-69 63-106 (356)
290 2bdt_A BH3686; alpha-beta prot 94.0 0.027 9.2E-07 52.7 3.3 22 24-45 3-24 (189)
291 2ze6_A Isopentenyl transferase 94.0 0.026 8.8E-07 55.7 3.2 23 24-46 2-24 (253)
292 4gp7_A Metallophosphoesterase; 94.0 0.024 8.1E-07 52.2 2.7 24 23-46 9-32 (171)
293 2qor_A Guanylate kinase; phosp 94.0 0.025 8.4E-07 53.8 2.9 24 23-46 12-35 (204)
294 1ex7_A Guanylate kinase; subst 94.0 0.024 8.1E-07 52.7 2.7 23 24-46 2-24 (186)
295 1lvg_A Guanylate kinase, GMP k 94.0 0.024 8.3E-07 53.6 2.7 23 24-46 5-27 (198)
296 3jvv_A Twitching mobility prot 93.9 0.047 1.6E-06 56.6 5.1 26 21-46 121-146 (356)
297 1kht_A Adenylate kinase; phosp 93.9 0.027 9.1E-07 52.8 3.0 23 24-46 4-26 (192)
298 2rhm_A Putative kinase; P-loop 93.9 0.031 1E-06 52.5 3.4 24 23-46 5-28 (193)
299 3rfe_A Platelet glycoprotein I 93.9 0.063 2.2E-06 46.6 5.1 50 662-712 12-66 (130)
300 3rfe_A Platelet glycoprotein I 93.9 0.072 2.5E-06 46.2 5.4 34 464-498 33-66 (130)
301 2jaq_A Deoxyguanosine kinase; 93.9 0.028 9.5E-07 53.3 3.0 22 25-46 2-23 (205)
302 3asz_A Uridine kinase; cytidin 93.8 0.033 1.1E-06 53.2 3.5 24 23-46 6-29 (211)
303 2bbw_A Adenylate kinase 4, AK4 93.8 0.031 1.1E-06 54.9 3.3 24 23-46 27-50 (246)
304 1via_A Shikimate kinase; struc 93.8 0.027 9.1E-07 52.0 2.6 22 25-46 6-27 (175)
305 3ney_A 55 kDa erythrocyte memb 93.8 0.034 1.2E-06 52.1 3.3 24 23-46 19-42 (197)
306 2if2_A Dephospho-COA kinase; a 93.8 0.03 1E-06 53.1 3.0 21 25-45 3-23 (204)
307 3hws_A ATP-dependent CLP prote 93.8 0.04 1.4E-06 57.7 4.2 43 3-46 17-74 (363)
308 2j41_A Guanylate kinase; GMP, 93.7 0.031 1.1E-06 53.1 3.1 24 23-46 6-29 (207)
309 1cke_A CK, MSSA, protein (cyti 93.7 0.031 1E-06 54.1 3.1 23 24-46 6-28 (227)
310 3fwy_A Light-independent proto 93.7 0.034 1.2E-06 56.6 3.5 26 21-46 46-71 (314)
311 1y63_A LMAJ004144AAA protein; 93.7 0.034 1.2E-06 51.8 3.2 24 23-46 10-33 (184)
312 2iyv_A Shikimate kinase, SK; t 93.7 0.028 9.5E-07 52.3 2.6 23 24-46 3-25 (184)
313 2qt1_A Nicotinamide riboside k 93.7 0.038 1.3E-06 52.6 3.6 24 23-46 21-44 (207)
314 1uf9_A TT1252 protein; P-loop, 93.7 0.037 1.3E-06 52.3 3.6 26 21-46 6-31 (203)
315 1g41_A Heat shock protein HSLU 93.6 0.036 1.2E-06 58.9 3.5 44 2-46 16-73 (444)
316 1xjc_A MOBB protein homolog; s 93.6 0.038 1.3E-06 50.3 3.2 24 23-46 4-27 (169)
317 1g8p_A Magnesium-chelatase 38 93.6 0.029 9.8E-07 58.5 2.7 44 2-46 25-68 (350)
318 2c95_A Adenylate kinase 1; tra 93.6 0.036 1.2E-06 52.1 3.2 24 23-46 9-32 (196)
319 3dm5_A SRP54, signal recogniti 93.6 0.16 5.5E-06 53.8 8.4 24 23-46 100-123 (443)
320 1jjv_A Dephospho-COA kinase; P 93.5 0.035 1.2E-06 52.8 3.1 22 24-45 3-24 (206)
321 1n0w_A DNA repair protein RAD5 93.5 0.16 5.3E-06 49.5 7.9 56 24-80 25-83 (243)
322 1htw_A HI0065; nucleotide-bind 93.5 0.038 1.3E-06 49.8 3.1 25 22-46 32-56 (158)
323 1zuh_A Shikimate kinase; alpha 93.5 0.038 1.3E-06 50.6 3.1 24 23-46 7-30 (168)
324 1ukz_A Uridylate kinase; trans 93.5 0.043 1.5E-06 52.0 3.5 25 22-46 14-38 (203)
325 1tev_A UMP-CMP kinase; ploop, 93.4 0.04 1.4E-06 51.7 3.3 23 24-46 4-26 (196)
326 2yvu_A Probable adenylyl-sulfa 93.4 0.043 1.5E-06 51.2 3.4 24 23-46 13-36 (186)
327 1znw_A Guanylate kinase, GMP k 93.4 0.038 1.3E-06 52.6 3.1 24 23-46 20-43 (207)
328 3aez_A Pantothenate kinase; tr 93.4 0.043 1.5E-06 55.8 3.6 25 22-46 89-113 (312)
329 3umf_A Adenylate kinase; rossm 93.4 0.043 1.5E-06 52.4 3.3 25 22-46 28-52 (217)
330 1z6g_A Guanylate kinase; struc 93.3 0.036 1.2E-06 53.2 2.7 24 23-46 23-46 (218)
331 2bwj_A Adenylate kinase 5; pho 93.3 0.039 1.3E-06 52.0 2.9 24 23-46 12-35 (199)
332 1e6c_A Shikimate kinase; phosp 93.3 0.037 1.3E-06 50.8 2.7 23 24-46 3-25 (173)
333 3cm0_A Adenylate kinase; ATP-b 93.3 0.041 1.4E-06 51.2 3.0 23 24-46 5-27 (186)
334 2plr_A DTMP kinase, probable t 93.3 0.046 1.6E-06 52.1 3.4 23 24-46 5-27 (213)
335 1tue_A Replication protein E1; 93.2 0.058 2E-06 50.4 3.8 36 11-46 45-81 (212)
336 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.047 1.6E-06 54.1 3.5 24 23-46 4-27 (260)
337 3kl4_A SRP54, signal recogniti 93.2 0.15 5.2E-06 54.0 7.5 24 23-46 97-120 (433)
338 2f1r_A Molybdopterin-guanine d 93.2 0.036 1.2E-06 50.8 2.3 23 24-46 3-25 (171)
339 2vli_A Antibiotic resistance p 93.2 0.035 1.2E-06 51.5 2.4 23 24-46 6-28 (183)
340 1rj9_A FTSY, signal recognitio 93.2 0.047 1.6E-06 55.3 3.4 24 23-46 102-125 (304)
341 2pt5_A Shikimate kinase, SK; a 93.2 0.045 1.5E-06 50.0 3.0 22 25-46 2-23 (168)
342 3vr4_D V-type sodium ATPase su 93.1 0.065 2.2E-06 56.5 4.5 102 25-129 153-258 (465)
343 1qf9_A UMP/CMP kinase, protein 93.1 0.046 1.6E-06 51.2 3.1 24 23-46 6-29 (194)
344 2cdn_A Adenylate kinase; phosp 93.1 0.044 1.5E-06 51.8 3.0 22 25-46 22-43 (201)
345 2grj_A Dephospho-COA kinase; T 93.1 0.047 1.6E-06 51.1 3.1 24 23-46 12-35 (192)
346 2jeo_A Uridine-cytidine kinase 93.0 0.055 1.9E-06 53.1 3.7 24 23-46 25-48 (245)
347 1s96_A Guanylate kinase, GMP k 93.0 0.047 1.6E-06 52.4 3.0 24 23-46 16-39 (219)
348 4e22_A Cytidylate kinase; P-lo 93.0 0.046 1.6E-06 53.9 3.0 24 23-46 27-50 (252)
349 2pbr_A DTMP kinase, thymidylat 93.0 0.049 1.7E-06 51.1 3.1 22 25-46 2-23 (195)
350 2z43_A DNA repair and recombin 93.0 0.17 5.9E-06 51.8 7.5 57 24-81 108-167 (324)
351 3e70_C DPA, signal recognition 92.9 0.077 2.6E-06 54.3 4.6 24 23-46 129-152 (328)
352 2i3b_A HCR-ntpase, human cance 92.9 0.047 1.6E-06 51.0 2.7 22 25-46 3-24 (189)
353 1uj2_A Uridine-cytidine kinase 92.8 0.058 2E-06 53.1 3.5 25 22-46 21-45 (252)
354 3mfy_A V-type ATP synthase alp 92.8 0.14 4.9E-06 55.0 6.6 48 23-75 227-275 (588)
355 3fb4_A Adenylate kinase; psych 92.8 0.052 1.8E-06 52.0 3.0 22 25-46 2-23 (216)
356 2wwf_A Thymidilate kinase, put 92.7 0.057 2E-06 51.5 3.2 24 23-46 10-33 (212)
357 4a74_A DNA repair and recombin 92.7 0.07 2.4E-06 51.6 3.9 42 24-65 26-70 (231)
358 3dl0_A Adenylate kinase; phosp 92.6 0.056 1.9E-06 51.8 3.0 22 25-46 2-23 (216)
359 1nn5_A Similar to deoxythymidy 92.6 0.06 2E-06 51.4 3.2 24 23-46 9-32 (215)
360 1gtv_A TMK, thymidylate kinase 92.6 0.036 1.2E-06 53.0 1.7 22 25-46 2-23 (214)
361 1aky_A Adenylate kinase; ATP:A 92.6 0.061 2.1E-06 51.7 3.3 23 24-46 5-27 (220)
362 3tqc_A Pantothenate kinase; bi 92.6 0.068 2.3E-06 54.4 3.7 24 23-46 92-115 (321)
363 2z0h_A DTMP kinase, thymidylat 92.6 0.058 2E-06 50.7 3.0 22 25-46 2-23 (197)
364 1zd8_A GTP:AMP phosphotransfer 92.6 0.056 1.9E-06 52.2 2.9 24 23-46 7-30 (227)
365 3nbx_X ATPase RAVA; AAA+ ATPas 92.6 0.077 2.6E-06 57.6 4.3 41 3-46 24-64 (500)
366 3p32_A Probable GTPase RV1496/ 92.5 0.11 3.8E-06 54.0 5.3 36 11-46 65-102 (355)
367 2v54_A DTMP kinase, thymidylat 92.5 0.062 2.1E-06 50.9 3.1 23 24-46 5-27 (204)
368 3l0o_A Transcription terminati 92.5 0.026 9E-07 57.9 0.5 52 14-66 165-217 (427)
369 3nwj_A ATSK2; P loop, shikimat 92.5 0.054 1.9E-06 53.0 2.7 24 23-46 48-71 (250)
370 1np6_A Molybdopterin-guanine d 92.4 0.068 2.3E-06 49.0 3.1 24 23-46 6-29 (174)
371 1zak_A Adenylate kinase; ATP:A 92.4 0.063 2.1E-06 51.7 3.0 24 23-46 5-28 (222)
372 2pez_A Bifunctional 3'-phospho 92.3 0.068 2.3E-06 49.4 3.1 24 23-46 5-28 (179)
373 3tif_A Uncharacterized ABC tra 92.3 0.064 2.2E-06 52.1 2.9 24 23-46 31-54 (235)
374 2px0_A Flagellar biosynthesis 92.2 0.074 2.5E-06 53.6 3.4 24 23-46 105-128 (296)
375 1v5w_A DMC1, meiotic recombina 92.2 0.26 8.8E-06 50.9 7.6 57 23-80 122-181 (343)
376 3b9q_A Chloroplast SRP recepto 92.2 0.077 2.6E-06 53.7 3.5 23 24-46 101-123 (302)
377 3sr0_A Adenylate kinase; phosp 92.2 0.071 2.4E-06 50.5 3.0 22 25-46 2-23 (206)
378 3b85_A Phosphate starvation-in 92.2 0.062 2.1E-06 51.0 2.6 23 24-46 23-45 (208)
379 1m7g_A Adenylylsulfate kinase; 92.2 0.075 2.6E-06 50.7 3.3 25 22-46 24-48 (211)
380 2pcj_A ABC transporter, lipopr 92.2 0.065 2.2E-06 51.6 2.8 23 24-46 31-53 (224)
381 3d3q_A TRNA delta(2)-isopenten 92.2 0.072 2.5E-06 54.4 3.2 23 24-46 8-30 (340)
382 2onk_A Molybdate/tungstate ABC 92.2 0.075 2.6E-06 51.7 3.2 23 24-46 25-47 (240)
383 1vht_A Dephospho-COA kinase; s 92.1 0.085 2.9E-06 50.6 3.6 23 23-45 4-26 (218)
384 3r20_A Cytidylate kinase; stru 92.1 0.072 2.5E-06 51.4 3.0 23 24-46 10-32 (233)
385 1sq5_A Pantothenate kinase; P- 92.1 0.081 2.8E-06 53.8 3.6 25 22-46 79-103 (308)
386 2qe7_A ATP synthase subunit al 92.1 0.23 7.8E-06 53.0 7.0 97 24-129 163-264 (502)
387 2ehv_A Hypothetical protein PH 92.0 0.072 2.5E-06 52.3 3.0 23 24-46 31-53 (251)
388 3lnc_A Guanylate kinase, GMP k 92.0 0.054 1.8E-06 52.6 2.0 23 24-46 28-51 (231)
389 3tlx_A Adenylate kinase 2; str 92.0 0.084 2.9E-06 51.6 3.4 25 22-46 28-52 (243)
390 2r9v_A ATP synthase subunit al 91.9 0.21 7.2E-06 53.3 6.5 97 24-129 176-277 (515)
391 3ake_A Cytidylate kinase; CMP 91.9 0.08 2.7E-06 50.2 3.1 22 25-46 4-25 (208)
392 3a8t_A Adenylate isopentenyltr 91.9 0.091 3.1E-06 53.4 3.5 23 24-46 41-63 (339)
393 3exa_A TRNA delta(2)-isopenten 91.9 0.092 3.1E-06 52.7 3.5 24 23-46 3-26 (322)
394 2cbz_A Multidrug resistance-as 91.9 0.077 2.6E-06 51.6 2.9 24 23-46 31-54 (237)
395 2f6r_A COA synthase, bifunctio 91.8 0.089 3E-06 52.7 3.5 23 23-45 75-97 (281)
396 3gfo_A Cobalt import ATP-bindi 91.8 0.077 2.6E-06 52.8 2.9 23 24-46 35-57 (275)
397 1a7j_A Phosphoribulokinase; tr 91.7 0.061 2.1E-06 54.1 2.1 25 22-46 4-28 (290)
398 1b0u_A Histidine permease; ABC 91.7 0.078 2.7E-06 52.4 2.9 24 23-46 32-55 (262)
399 2i1q_A DNA repair and recombin 91.7 0.31 1.1E-05 49.8 7.6 58 23-81 98-168 (322)
400 3lda_A DNA repair protein RAD5 91.7 0.34 1.2E-05 50.9 7.9 57 24-81 179-238 (400)
401 3be4_A Adenylate kinase; malar 91.7 0.083 2.8E-06 50.6 2.9 23 24-46 6-28 (217)
402 1sgw_A Putative ABC transporte 91.7 0.075 2.6E-06 50.7 2.6 23 24-46 36-58 (214)
403 1e4v_A Adenylate kinase; trans 91.7 0.085 2.9E-06 50.4 3.0 22 25-46 2-23 (214)
404 1p9r_A General secretion pathw 91.7 0.13 4.5E-06 54.5 4.6 42 4-46 149-190 (418)
405 3vr4_A V-type sodium ATPase ca 91.6 0.17 5.8E-06 54.7 5.4 48 23-75 232-280 (600)
406 3crm_A TRNA delta(2)-isopenten 91.6 0.089 3E-06 53.3 3.1 23 24-46 6-28 (323)
407 1ji0_A ABC transporter; ATP bi 91.5 0.086 2.9E-06 51.4 2.9 23 24-46 33-55 (240)
408 3gqb_B V-type ATP synthase bet 91.5 0.12 3.9E-06 54.6 4.0 54 24-77 148-210 (464)
409 2d2e_A SUFC protein; ABC-ATPas 91.5 0.093 3.2E-06 51.5 3.1 23 24-46 30-52 (250)
410 2olj_A Amino acid ABC transpor 91.5 0.087 3E-06 52.1 2.9 24 23-46 50-73 (263)
411 2pze_A Cystic fibrosis transme 91.5 0.089 3E-06 50.9 2.9 23 24-46 35-57 (229)
412 2xb4_A Adenylate kinase; ATP-b 91.5 0.091 3.1E-06 50.6 3.0 22 25-46 2-23 (223)
413 1vma_A Cell division protein F 91.5 0.11 3.6E-06 52.7 3.5 24 23-46 104-127 (306)
414 2og2_A Putative signal recogni 91.4 0.1 3.6E-06 53.9 3.5 24 23-46 157-180 (359)
415 4g1u_C Hemin import ATP-bindin 91.4 0.087 3E-06 52.2 2.8 24 23-46 37-60 (266)
416 1g6h_A High-affinity branched- 91.4 0.09 3.1E-06 51.8 2.9 23 24-46 34-56 (257)
417 2ff7_A Alpha-hemolysin translo 91.4 0.092 3.1E-06 51.4 2.9 23 24-46 36-58 (247)
418 4eaq_A DTMP kinase, thymidylat 91.3 0.16 5.6E-06 49.0 4.6 24 23-46 26-49 (229)
419 2xxa_A Signal recognition part 91.3 0.16 5.3E-06 54.2 4.8 24 23-46 100-123 (433)
420 1mv5_A LMRA, multidrug resista 91.3 0.095 3.2E-06 51.2 2.9 24 23-46 28-51 (243)
421 1oix_A RAS-related protein RAB 91.3 0.1 3.5E-06 48.8 3.0 23 24-46 30-52 (191)
422 1vpl_A ABC transporter, ATP-bi 91.3 0.094 3.2E-06 51.6 2.9 24 23-46 41-64 (256)
423 3k1j_A LON protease, ATP-depen 91.3 0.11 3.8E-06 58.4 3.8 41 3-46 43-83 (604)
424 2zu0_C Probable ATP-dependent 91.2 0.1 3.4E-06 51.8 3.0 24 23-46 46-69 (267)
425 1ak2_A Adenylate kinase isoenz 91.2 0.1 3.5E-06 50.7 3.0 23 24-46 17-39 (233)
426 2ghi_A Transport protein; mult 91.2 0.1 3.4E-06 51.6 2.9 23 24-46 47-69 (260)
427 2ixe_A Antigen peptide transpo 91.2 0.099 3.4E-06 51.9 2.9 24 23-46 45-68 (271)
428 2qmh_A HPR kinase/phosphorylas 91.1 0.12 4.1E-06 48.0 3.2 23 24-46 35-57 (205)
429 3foz_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 51.9 3.2 24 23-46 10-33 (316)
430 2v9p_A Replication protein E1; 91.1 0.11 3.7E-06 52.4 3.1 24 23-46 126-149 (305)
431 2qi9_C Vitamin B12 import ATP- 91.0 0.1 3.6E-06 51.0 2.9 23 24-46 27-49 (249)
432 2nq2_C Hypothetical ABC transp 90.9 0.11 3.7E-06 51.1 2.9 23 24-46 32-54 (253)
433 1fx0_A ATP synthase alpha chai 90.9 0.22 7.5E-06 53.3 5.4 97 24-129 164-265 (507)
434 2ihy_A ABC transporter, ATP-bi 90.9 0.11 3.7E-06 51.9 2.9 23 24-46 48-70 (279)
435 3nh6_A ATP-binding cassette SU 90.9 0.1 3.5E-06 52.7 2.8 23 24-46 81-103 (306)
436 2c61_A A-type ATP synthase non 90.9 0.23 7.7E-06 52.8 5.4 54 24-77 153-208 (469)
437 2yz2_A Putative ABC transporte 90.9 0.11 3.7E-06 51.5 2.9 24 23-46 33-56 (266)
438 3sop_A Neuronal-specific septi 90.8 0.11 3.9E-06 51.5 3.0 22 25-46 4-25 (270)
439 2eyu_A Twitching motility prot 90.8 0.19 6.6E-06 49.5 4.6 26 21-46 23-48 (261)
440 2f9l_A RAB11B, member RAS onco 90.8 0.12 4.2E-06 48.6 3.1 23 24-46 6-28 (199)
441 2dr3_A UPF0273 protein PH0284; 90.8 0.16 5.6E-06 49.5 4.1 39 24-65 24-62 (247)
442 1u0j_A DNA replication protein 90.8 0.22 7.4E-06 48.8 4.8 35 12-46 91-127 (267)
443 2wji_A Ferrous iron transport 90.8 0.12 4.2E-06 46.8 3.0 23 24-46 4-26 (165)
444 2yhs_A FTSY, cell division pro 90.7 0.14 4.6E-06 55.0 3.6 24 23-46 293-316 (503)
445 2dyk_A GTP-binding protein; GT 90.6 0.15 5E-06 45.8 3.4 23 24-46 2-24 (161)
446 1zu4_A FTSY; GTPase, signal re 90.6 0.14 4.9E-06 52.1 3.6 24 23-46 105-128 (320)
447 1yrb_A ATP(GTP)binding protein 90.6 0.14 4.8E-06 50.6 3.5 24 23-46 14-37 (262)
448 2w0m_A SSO2452; RECA, SSPF, un 90.6 0.13 4.3E-06 49.8 3.0 37 24-63 24-60 (235)
449 3zvl_A Bifunctional polynucleo 90.5 0.14 4.6E-06 54.6 3.5 24 23-46 258-281 (416)
450 1tq4_A IIGP1, interferon-induc 90.5 0.18 6E-06 53.2 4.3 25 22-46 68-92 (413)
451 3oaa_A ATP synthase subunit al 90.5 0.39 1.3E-05 51.1 6.8 97 24-129 163-264 (513)
452 1ltq_A Polynucleotide kinase; 90.5 0.13 4.5E-06 52.1 3.2 23 24-46 3-25 (301)
453 2zej_A Dardarin, leucine-rich 90.5 0.12 4E-06 48.0 2.6 22 25-46 4-25 (184)
454 3bh0_A DNAB-like replicative h 90.3 0.38 1.3E-05 48.9 6.5 50 24-78 69-118 (315)
455 2vp4_A Deoxynucleoside kinase; 90.3 0.1 3.6E-06 50.5 2.1 24 23-46 20-43 (230)
456 1j8m_F SRP54, signal recogniti 90.1 0.29 9.9E-06 49.2 5.3 37 23-62 98-134 (297)
457 1svm_A Large T antigen; AAA+ f 90.1 0.16 5.5E-06 52.9 3.4 25 22-46 168-192 (377)
458 2j37_W Signal recognition part 90.1 0.22 7.4E-06 54.0 4.6 24 23-46 101-124 (504)
459 2pjz_A Hypothetical protein ST 90.1 0.14 4.8E-06 50.5 2.9 23 24-46 31-53 (263)
460 1fzq_A ADP-ribosylation factor 90.0 0.19 6.3E-06 46.4 3.6 25 22-46 15-39 (181)
461 3f9v_A Minichromosome maintena 90.0 0.092 3.1E-06 58.7 1.6 22 25-46 329-350 (595)
462 3eph_A TRNA isopentenyltransfe 90.0 0.16 5.6E-06 52.8 3.4 24 23-46 2-25 (409)
463 2wjg_A FEOB, ferrous iron tran 89.9 0.16 5.6E-06 47.0 3.1 23 24-46 8-30 (188)
464 1ls1_A Signal recognition part 89.9 0.18 6E-06 50.9 3.5 24 23-46 98-121 (295)
465 2ck3_A ATP synthase subunit al 89.9 0.38 1.3E-05 51.5 6.1 102 24-129 163-272 (510)
466 3end_A Light-independent proto 89.9 0.17 5.9E-06 51.4 3.5 43 22-67 40-82 (307)
467 1q3t_A Cytidylate kinase; nucl 89.8 0.18 6.2E-06 48.9 3.5 24 23-46 16-39 (236)
468 4a1f_A DNAB helicase, replicat 89.8 0.39 1.3E-05 49.1 6.0 51 24-79 47-97 (338)
469 3cmu_A Protein RECA, recombina 89.8 0.31 1E-05 61.2 6.1 45 23-70 1427-1471(2050)
470 1nlf_A Regulatory protein REPA 89.8 0.15 5.2E-06 50.9 2.9 24 23-46 30-53 (279)
471 1f6b_A SAR1; gtpases, N-termin 89.7 0.21 7.3E-06 46.8 3.8 34 13-46 14-48 (198)
472 2ce2_X GTPase HRAS; signaling 89.7 0.16 5.6E-06 45.6 2.8 22 25-46 5-26 (166)
473 2v3c_C SRP54, signal recogniti 89.6 0.14 4.9E-06 54.5 2.7 24 23-46 99-122 (432)
474 1cr0_A DNA primase/helicase; R 89.6 0.16 5.6E-06 51.3 3.0 39 23-63 35-73 (296)
475 2ocp_A DGK, deoxyguanosine kin 89.6 0.19 6.5E-06 49.0 3.4 23 24-46 3-25 (241)
476 1z2a_A RAS-related protein RAB 89.6 0.17 5.9E-06 45.7 2.9 22 25-46 7-28 (168)
477 2bbs_A Cystic fibrosis transme 89.5 0.16 5.5E-06 50.9 2.9 23 24-46 65-87 (290)
478 4akg_A Glutathione S-transfera 89.5 0.43 1.5E-05 62.1 7.3 73 1-80 1586-1663(2695)
479 1pzn_A RAD51, DNA repair and r 89.5 0.4 1.4E-05 49.6 5.9 56 23-79 131-189 (349)
480 2lkc_A Translation initiation 89.4 0.22 7.7E-06 45.5 3.6 25 22-46 7-31 (178)
481 1nrj_B SR-beta, signal recogni 89.4 0.21 7.2E-06 47.6 3.5 26 21-46 10-35 (218)
482 1zj6_A ADP-ribosylation factor 89.4 0.32 1.1E-05 44.9 4.8 34 12-46 6-39 (187)
483 3fvq_A Fe(3+) IONS import ATP- 89.4 0.17 5.9E-06 52.1 3.0 23 24-46 31-53 (359)
484 2ged_A SR-beta, signal recogni 89.3 0.22 7.5E-06 46.4 3.5 24 23-46 48-71 (193)
485 3tui_C Methionine import ATP-b 89.3 0.18 6.1E-06 52.1 3.0 23 24-46 55-77 (366)
486 3gqb_A V-type ATP synthase alp 89.2 0.37 1.3E-05 51.8 5.4 46 24-74 222-268 (578)
487 1ksh_A ARF-like protein 2; sma 89.2 0.22 7.5E-06 46.0 3.4 27 21-47 16-42 (186)
488 1ypw_A Transitional endoplasmi 89.2 0.1 3.6E-06 60.6 1.3 44 2-46 478-534 (806)
489 3con_A GTPase NRAS; structural 89.1 0.19 6.4E-06 46.7 2.9 22 25-46 23-44 (190)
490 3io3_A DEHA2D07832P; chaperone 89.1 0.39 1.3E-05 49.4 5.5 51 17-68 12-62 (348)
491 2gj8_A MNME, tRNA modification 89.1 0.21 7.1E-06 45.7 3.0 23 24-46 5-27 (172)
492 2nzj_A GTP-binding protein REM 89.0 0.19 6.4E-06 45.8 2.7 23 24-46 5-27 (175)
493 1moz_A ARL1, ADP-ribosylation 89.0 0.2 7E-06 46.0 3.0 26 21-46 16-41 (183)
494 1svi_A GTP-binding protein YSX 89.0 0.23 7.7E-06 46.3 3.4 25 22-46 22-46 (195)
495 4edh_A DTMP kinase, thymidylat 88.9 0.51 1.7E-05 44.8 5.7 23 24-46 7-29 (213)
496 3kta_A Chromosome segregation 88.9 0.21 7.1E-06 46.2 3.0 23 24-46 27-49 (182)
497 2r8r_A Sensor protein; KDPD, P 88.9 0.36 1.2E-05 45.9 4.5 22 25-46 8-29 (228)
498 1nij_A Hypothetical protein YJ 88.9 0.2 6.8E-06 51.2 3.0 25 22-46 3-27 (318)
499 1u8z_A RAS-related protein RAL 88.9 0.21 7E-06 45.0 2.9 23 25-47 6-28 (168)
500 2atv_A RERG, RAS-like estrogen 88.8 0.25 8.5E-06 46.2 3.5 24 23-46 28-51 (196)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.5e-45 Score=409.48 Aligned_cols=312 Identities=15% Similarity=0.131 Sum_probs=237.7
Q ss_pred hhhhhhhHHHHHHHhhcC---CceEEEEEcCCCchhHHHHHHHhh--cccccccccceEEEEEccccc--chhHHHHHHH
Q 039334 4 ERVASSQKEKISELLKED---GRSTIILIGDPGLWKTWLEREISK--NKVIASSSCYTTLWINKAEKY--SSNLLEEAIS 76 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~---~~~vi~i~G~~G~GKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~ 76 (782)
+|.+ +++++|.++|.++ +.+||+|+||||+||||||+++|+ +..+ +.+|+.++||++++.+ +...++++|+
T Consensus 131 ~GR~-~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIRE-YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLI-GINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCH-HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTB-TTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHH-hccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 5888 9999999999654 578999999999999999999998 5455 4679999999999885 8999999999
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCc-eeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCC
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKK-NYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQP 155 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~ 155 (782)
++++...... . . ......+...+...+++. ++++ ||||||||||+. ..+ .|.. .
T Consensus 209 ~~l~~~~~~~-~--~-~~~~~~~~~~l~~~l~~~-----L~~~kr~LlVLDdv~~~--~~~-----~~~~---------~ 263 (549)
T 2a5y_B 209 LMLKSEDDLL-N--F-PSVEHVTSVVLKRMICNA-----LIDRPNTLFVFDDVVQE--ETI-----RWAQ---------E 263 (549)
T ss_dssp HHHTTTSCCT-T--C-CCCTTCCHHHHHHHHHHH-----HTTSTTEEEEEEEECCH--HHH-----HHHH---------H
T ss_pred HHHhcCcccc-c--c-cccccccHHHHHHHHHHH-----HcCCCcEEEEEECCCCc--hhh-----cccc---------c
Confidence 9998632100 0 0 000122334567788888 7886 999999999975 222 3433 2
Q ss_pred CCcEEEEEeeccccCC------CeeecCCCCHHHHHHHHHh-hhccc--cchhHHHHHHHHhcCCcHHHHHHHHHHHhhc
Q 039334 156 DHLKIIMTRRTTKQSG------KVIKFPSMSTEESLNLLKN-EFSDH--QVSGELFEFIAEKGRRSPAAITMIAKALKKV 226 (782)
Q Consensus 156 ~gs~IivTTr~~~~~~------~~~~l~~L~~~~~~~Lf~~-~~~~~--~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 226 (782)
+||+||||||++.++. .+++|++|+.+|||+||.+ +++.. ...++++.+|+++|+|+|||++++|+.++.+
T Consensus 264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 6799999999986543 5699999999999999999 67654 3344689999999999999999999998654
Q ss_pred cccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhh-----------hhhccccCCccccHHHHHHHHHH
Q 039334 227 VQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFW-----------HSIQFFRKYRSIHYNVLITHWIM 295 (782)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~a~fp~~~~~i~~~~Li~~Wia 295 (782)
. |+|...+...... .....+..++.+||++||.+ +|.||+ |||+||+++ .|+ +++|+|
T Consensus 344 ---~-w~~~~~l~~~l~~-~~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~-~i~----i~~w~a 412 (549)
T 2a5y_B 344 ---T-FEKMAQLNNKLES-RGLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGV-DIP----VKLWSC 412 (549)
T ss_dssp ---S-HHHHHHHHHHHHH-HCSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTC-CEE----HHHHHH
T ss_pred ---h-HHHHHHhHHHhhc-ccHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCC-eee----eeeeee
Confidence 2 4555555543221 13567899999999999996 999999 999999999 798 899999
Q ss_pred c--CCCCCchhhHHHHHHHHHHHHHHHHHHhccCceeccCcceehhhhhHhhhhhhhcccccccc
Q 039334 296 E--GYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQDVNIVVMEGAALNMIDSRRKGCGGIDR 358 (782)
Q Consensus 296 e--gfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (782)
+ ||+....+..+.+ ++++ |+++|++|+|+++...+ ....|.||+++++++..++..++
T Consensus 413 ~~~G~i~~~~~~~~~~---~~~~-~l~~L~~rsLl~~~~~~-~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 413 VIPVDICSNEEEQLDD---EVAD-RLKRLSKRGALLSGKRM-PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HSCC-------CCCTH---HHHH-HHHHTTTBSSCSEEECS-SSCEEECCHHHHHHHHTTSCTHH
T ss_pred eccceeccCCCCCCHH---HHHH-HHHHHHHcCCeeEecCC-CceEEEeChHHHHHHHHHHHHHH
Confidence 9 9997643112233 5666 99999999999876543 23458999999999988776554
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.3e-37 Score=346.32 Aligned_cols=291 Identities=14% Similarity=0.141 Sum_probs=213.3
Q ss_pred hhhhhhhHHHHHHHhhc-CCceEEEEEcCCCchhHHHHHHHhhcccccccccce-EEEEEcccccchhHHHHHHHHhhcc
Q 039334 4 ERVASSQKEKISELLKE-DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYT-TLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
||.+ +++++|.++|.+ ++.+||+|+||||+||||||+++|++.++. .+|+. ++||++++.++...++..|++.+..
T Consensus 131 VGRe-~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 131 VSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCH-HHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 6777 899999999976 567899999999999999999999986563 56886 8999999999988888888876543
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKII 161 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~Ii 161 (782)
.................+.+.+...+++.+. .+++||+||||||||+. ..|+.+ | +|||||
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~--~l~~KRvLLVLDDVwd~---------eqLe~f----~----pGSRIL 269 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLLNVQNA---------KAWNAF----N----LSCKIL 269 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHH--HSTTSSCEEEEESCCCH---------HHHHHH----H----SSCCEE
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHH--hhcCCCEEEEEeCcChH---------HHHHhh----C----CCeEEE
Confidence 1100000000000001223334455555410 13789999999999974 223332 2 579999
Q ss_pred EEeeccccCC-----CeeecC------CCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHHHHHHHhhccccc
Q 039334 162 MTRRTTKQSG-----KVIKFP------SMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITMIAKALKKVVQRD 230 (782)
Q Consensus 162 vTTr~~~~~~-----~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~ 230 (782)
||||++.++. ..+.++ +|+.+|||+||.+.++.. ..++..+| |+|+|||++++|+.|+.++. .
T Consensus 270 VTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~eeL~~eI---CgGLPLALkLaGs~Lr~k~~-s 343 (1221)
T 1vt4_I 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPREV---LTTNPRRLSIIAESIRDGLA-T 343 (1221)
T ss_dssp EECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TTTHHHHH---CCCCHHHHHHHHHHHHHSCS-S
T ss_pred EeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--HHHHHHHH---hCCCHHHHHHHHHHHhCCCC-C
Confidence 9999996652 356666 999999999999976543 23344444 99999999999999998753 2
Q ss_pred hhHHHHHHhhccccCCCCcccchhhhcccCCCCchhh-hhhhhhhhccccCCccccHHHHHHHHHHcCCCCCchhhHHHH
Q 039334 231 SRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVL-KNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFEKDREVFELE 309 (782)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~~~~~~~~~e 309 (782)
+..|... ....+..++++||+.||.+ . |.||+|||+||+++ .|++..++.+|+++| .
T Consensus 344 ~eeW~~~---------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~-~I~~elLa~LW~aeG---e-------- 401 (1221)
T 1vt4_I 344 WDNWKHV---------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSA-HIPTILLSLIWFDVI---K-------- 401 (1221)
T ss_dssp HHHHHHC---------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTS-CEEHHHHHHHHCSSC---S--------
T ss_pred HHHHhcC---------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCC-CCCHHHHHHHhcCCC---H--------
Confidence 2334321 2467889999999999997 8 99999999999999 899999999999887 1
Q ss_pred HHHHHHHHHHHHHHhccCceeccCcceehhhhhHhhhhhh
Q 039334 310 KAYRKAHGALMDLIDRGILKAQDVNIVVMEGAALNMIDSR 349 (782)
Q Consensus 310 ~~~~~~~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~ 349 (782)
+.++.++++|+++||++..... ..+.||+++.+.
T Consensus 402 ---edAe~~L~eLvdRSLLq~d~~~---~rYrMHDLllEL 435 (1221)
T 1vt4_I 402 ---SDVMVVVNKLHKYSLVEKQPKE---STISIPSIYLEL 435 (1221)
T ss_dssp ---HHHHHHHHHHHTSSSSSBCSSS---SEEBCCCHHHHH
T ss_pred ---HHHHHHHHHHHhhCCEEEeCCC---CEEEehHHHHHH
Confidence 2367799999999999874221 246778776553
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-33 Score=353.18 Aligned_cols=303 Identities=13% Similarity=0.118 Sum_probs=226.8
Q ss_pred chhhhhhhhHHHHHHHhh--cCCceEEEEEcCCCchhHHHHHHHhhcccccc-cccceEEEEEccccc--chhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLK--EDGRSTIILIGDPGLWKTWLEREISKNKVIAS-SSCYTTLWINKAEKY--SSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~--~~~~~~~~i~ 76 (782)
+.||.+ +++++|.++|. +++.++|+|+||||+||||||+++|++..+.+ ..|+.++||++++.. +....+..++
T Consensus 125 ~~vgR~-~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 125 IFVTRK-KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SCCCCH-HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred eeccHH-HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 367888 99999999995 35688999999999999999999999854323 356678899998844 4455577777
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCc--eeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCC
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKK--NYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQ 154 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~ 154 (782)
.++....... .......+.+.+.+++. +.++ |+||||||||+. ..|..+
T Consensus 204 ~~l~~~~~~~-------~~~~~~~~~~~~~l~~~-----l~~~~~~~LlvlDd~~~~---------~~~~~~-------- 254 (1249)
T 3sfz_A 204 MRLDQEESFS-------QRLPLNIEEAKDRLRVL-----MLRKHPRSLLILDDVWDP---------WVLKAF-------- 254 (1249)
T ss_dssp HHHTTTCTTC-------SSCCSSHHHHHHHHHHH-----TSSSSCSCEEEEESCCCH---------HHHTTT--------
T ss_pred HHhhhhcccc-------cCCCCCHHHHHHHHHHH-----HhccCCCEEEEEecCCCH---------HHHHhh--------
Confidence 7776532100 01123445566667766 5555 999999999965 123332
Q ss_pred CCCcEEEEEeeccccCC------CeeecCC-CCHHHHHHHHHh-hhccccchhHHHHHHHHhcCCcHHHHHHHHHHHhhc
Q 039334 155 PDHLKIIMTRRTTKQSG------KVIKFPS-MSTEESLNLLKN-EFSDHQVSGELFEFIAEKGRRSPAAITMIAKALKKV 226 (782)
Q Consensus 155 ~~gs~IivTTr~~~~~~------~~~~l~~-L~~~~~~~Lf~~-~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~ 226 (782)
.+|||||||||++.++. ..+.+++ |+.+||++||.+ +.......++.+++|+++|+|+||||+++|++|+.+
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~ 334 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDF 334 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcC
Confidence 36799999999997753 6788885 999999999998 543333445689999999999999999999999987
Q ss_pred cccchhHHHHHHhhccccC------CCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCCC
Q 039334 227 VQRDSRDLASAIGKAAYYE------KPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYFE 300 (782)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~------~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi~ 300 (782)
+ ..|.+..+.+....... ...+.+..++.+||+.||.+ +|.||+|||+||+++ .|++..++.+|.+++
T Consensus 335 ~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~-~i~~~~~~~~~~~~~--- 408 (1249)
T 3sfz_A 335 P-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDV-KVPTKVLCVLWDLET--- 408 (1249)
T ss_dssp S-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTC-CEEHHHHHHHHTCCH---
T ss_pred h-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCC-eeCHHHHHHHhCCCH---
Confidence 7 34545555554432111 11245788999999999997 999999999999999 899999999996541
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhccCceeccCcceehhhhhHhhhhhhhccc
Q 039334 301 KDREVFELEKAYRKAHGALMDLIDRGILKAQDVNIVVMEGAALNMIDSRRKGC 353 (782)
Q Consensus 301 ~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (782)
+.++.++++|++++|++...... ...+.||+++++++...
T Consensus 409 ------------~~~~~~l~~L~~~sl~~~~~~~~-~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 409 ------------EEVEDILQEFVNKSLLFCNRNGK-SFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp ------------HHHHHHHHHHHHTTSCEEEESSS-SEEEECCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhccceEEecCCC-ceEEEecHHHHHHHHhh
Confidence 45678999999999998654332 22467888887766554
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.4e-30 Score=299.93 Aligned_cols=302 Identities=20% Similarity=0.285 Sum_probs=136.2
Q ss_pred CCcccc--CCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC-CCC--CCC-CCCC------CCCcEEEccCCCC
Q 039334 454 DITGIK--ELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP-MKS--LPS-LPKL------TKLRFLILRQCSC 521 (782)
Q Consensus 454 ~~~~l~--~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-l~~--lp~-l~~l------~~L~~L~l~~~~~ 521 (782)
.|..++ ++++|++|++++|...+.+|..+ +++++|++|++++|. ++. +|. ++.+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 444444 55555555555554444445443 455555555555554 443 444 4333 5555555555544
Q ss_pred CCCCCC---ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc-CcCCCCc-ccEEEecCcCCCCCCC
Q 039334 522 LEYMPS---LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP-KFTDLKH-LSRILLRGCRKLHILP 596 (782)
Q Consensus 522 ~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~~l~~-L~~L~l~~~~~~~~~~ 596 (782)
. .+|. +..+++|+.|++++|. +.+..+ .+..+++|+.|++++|.+..+| .+..+++ |+.|++++|.....+.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCC-CEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCc-Cccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 3 3443 4555555555555544 221112 3444445555555555444443 2444444 5555555444332222
Q ss_pred CCCCC--CCCCEEEcccCCCCCccccccCCCCCCC------------------CC----CCCCCccEEEecCCCCCCCCC
Q 039334 597 SFQKL--HSLKILDLSEVGFSNFTEIKLKDPSTQQ------------------LP----FLPCSLSELYLRKCSALEHLP 652 (782)
Q Consensus 597 ~l~~l--~~L~~L~l~~~~l~~~~~~~~~~~~~~~------------------l~----~~~~~L~~L~l~~~~~l~~l~ 652 (782)
.+..+ ++|+.|++++|.+.+..+..+....... +| ...++|+.|++++|... .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 22222 2445555554444432222111000000 00 00125555555555322 333
Q ss_pred c--CCC-------CCCCCEEEeecCCCccccc-----cccccceeeccccccCCCCC-CCCCCCcccEEeccc------C
Q 039334 653 L--TTA-------LKNLELLDLSNTNLKKLPS-----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSG------C 711 (782)
Q Consensus 653 ~--~~~-------l~~L~~L~L~~~~l~~l~~-----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~------c 711 (782)
. +.. +++|+.|++++|.++.+|. .+++|+.|++++|. ++.+| .+..+++|+.|++++ |
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccC
Confidence 2 111 1155555555555555543 23455555555553 33344 344555555555532 3
Q ss_pred CCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 712 INLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 712 ~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
...+.+|. +..+++|+.|++++|+++.+|..+. +.|+.|++++|+++.+.
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-----~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-----PNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-----TTCCEEECCSCTTCEEE
T ss_pred cccccChHHHhcCCCCCEEECCCCcCCccCHhHh-----CcCCEEECcCCCCcccc
Confidence 22334444 5555566666666665555555432 34555566666555544
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.4e-29 Score=296.13 Aligned_cols=319 Identities=18% Similarity=0.271 Sum_probs=166.9
Q ss_pred CCCCccEEEEecCCCCC------------------CCcccc--CCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccC
Q 039334 437 SFERLTVLVLRNCDMLE------------------DITGIK--ELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSR 496 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~------------------~~~~l~--~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~ 496 (782)
.+++|++|+|++|.+.+ .|+.++ ++++|++|+|++|...+.+|..+ +.+++|++|++++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIAC 524 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcC
Confidence 55666666666666665 455555 66666666666665555666554 6666666666666
Q ss_pred CC-CCC--CCC-CCCCC-------CCcEEEccCCCCCCCCCC---ccCCCcccEEEccCCCCCCcccccccCCCCCccEE
Q 039334 497 CP-MKS--LPS-LPKLT-------KLRFLILRQCSCLEYMPS---LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMV 562 (782)
Q Consensus 497 ~~-l~~--lp~-l~~l~-------~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 562 (782)
|. ++. +|. ++.++ +|++|++++|.+. .+|. +..+++|+.|++++|.. ..++ .+..+++|+.|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp--~~~~L~~L~~L 600 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLE--AFGTNVKLTDL 600 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCC--CCCTTSEESEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccch--hhcCCCcceEE
Confidence 65 553 554 43333 6666666666554 4554 56666666666666653 2222 55666666666
Q ss_pred EccCCCCCCCc-CcCCCCc-ccEEEecCcCCCCCCCCCCCCC--CCCEEEcccCCCCCccccccCCC-------------
Q 039334 563 DLSYTQIPWLP-KFTDLKH-LSRILLRGCRKLHILPSFQKLH--SLKILDLSEVGFSNFTEIKLKDP------------- 625 (782)
Q Consensus 563 ~l~~~~~~~l~-~~~~l~~-L~~L~l~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~~~~~~~~~~~------------- 625 (782)
++++|.+..+| .+..+++ |+.|++++|.....+..+..++ +|+.|++++|.+.+..+......
T Consensus 601 ~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 601 KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp ECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred ECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 66666666555 4555665 6666666665442222233332 36666666665544221100000
Q ss_pred ---CCCCCCC----CCCCccEEEecCCCCCCCCCc-CC--------CCCCCCEEEeecCCCccccc-----cccccceee
Q 039334 626 ---STQQLPF----LPCSLSELYLRKCSALEHLPL-TT--------ALKNLELLDLSNTNLKKLPS-----ELCNLRKLL 684 (782)
Q Consensus 626 ---~~~~l~~----~~~~L~~L~l~~~~~l~~l~~-~~--------~l~~L~~L~L~~~~l~~l~~-----~l~~L~~L~ 684 (782)
....+|. ..++|+.|+|++|. +..+|. .. ++++|+.|+|++|.++.+|. .+++|+.|+
T Consensus 681 s~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~ 759 (876)
T 4ecn_A 681 SYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759 (876)
T ss_dssp CSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEE
T ss_pred cCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEE
Confidence 0000000 01255555555552 223332 11 11255666666655555554 235555666
Q ss_pred ccccccCCCCC-CCCCCCcccEEeccc------CCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEe
Q 039334 685 LNNCLSLTKLP-EMKGLEKLEELRLSG------CINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVD 756 (782)
Q Consensus 685 L~~~~~l~~l~-~~~~l~~L~~L~l~~------c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~ 756 (782)
|++|. ++.+| .+..+++|+.|+|++ |.....+|. +..+++|+.|++++|+++.+|..+. +.|+.|+
T Consensus 760 Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~-----~~L~~Ld 833 (876)
T 4ecn_A 760 VSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT-----PQLYILD 833 (876)
T ss_dssp CCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-----SSSCEEE
T ss_pred eCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc-----CCCCEEE
Confidence 65552 33344 345555666666544 322334444 5556666666666666655555532 2455666
Q ss_pred CCCCCCCCCcc
Q 039334 757 EETNQAEDVNR 767 (782)
Q Consensus 757 ~~~n~~~~~~~ 767 (782)
+++|++.++..
T Consensus 834 Ls~N~l~~i~~ 844 (876)
T 4ecn_A 834 IADNPNISIDV 844 (876)
T ss_dssp CCSCTTCEEEC
T ss_pred CCCCCCCccCh
Confidence 66666655543
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7.5e-29 Score=275.41 Aligned_cols=346 Identities=19% Similarity=0.273 Sum_probs=282.4
Q ss_pred CCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEee
Q 039334 392 LREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEIS 470 (782)
Q Consensus 392 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 470 (782)
..+++.|.++++.+.. ++. +..+++|++|++++|.+..+++. .+++|++|++++|.+...++ +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 3467888998887654 332 55689999999999999887765 88999999999998877766 9999999999999
Q ss_pred cCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccc
Q 039334 471 GASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQ 550 (782)
Q Consensus 471 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 550 (782)
+|. +..++. +..+++|++|++++|.+..+|.+..+++|++|++.++ ...++.+..+++|+.|+++++. +...
T Consensus 121 ~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~-l~~~-- 192 (466)
T 1o6v_A 121 NNQ-ITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNK-VSDI-- 192 (466)
T ss_dssp SSC-CCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSC-CCCC--
T ss_pred CCC-CCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCc-CCCC--
Confidence 985 777776 5899999999999999888877888999999999743 3345558899999999999887 3333
Q ss_pred cccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCC
Q 039334 551 LDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQL 630 (782)
Q Consensus 551 ~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l 630 (782)
..+..+++|+.|++++|.+..++.++.+++|+.|++++|... .++.+..+++|+.|++++|.+.+..+ +..
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~------ 263 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP--LSG------ 263 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GTT------
T ss_pred hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh--hhc------
Confidence 347788999999999999988877888999999999987643 45678889999999999998887654 211
Q ss_pred CCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCCCCCCCCcccEEec
Q 039334 631 PFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRL 708 (782)
Q Consensus 631 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l 708 (782)
.++|+.|++++|. +..++.+..+++|+.|++++|.++.++. .+++|+.|++++|. +..++.+..+++|+.|++
T Consensus 264 ---l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 ---LTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp ---CTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEEC
T ss_pred ---CCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-CCCchhhccCccCCEeEC
Confidence 2389999999984 5555557889999999999999988776 78999999999994 555555788999999999
Q ss_pred ccCCCCCCCCCCCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCccc
Q 039334 709 SGCINLTELPNLNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVNRG 768 (782)
Q Consensus 709 ~~c~~l~~l~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~~ 768 (782)
++| .++.++.+..+++|+.|++++|+++.+++ +..++.|+.|++++|.++..|..
T Consensus 339 ~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 339 YNN-KVSDVSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp CSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEEECCCBC
T ss_pred CCC-ccCCchhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCCcccCCchh
Confidence 998 67777778889999999999999986654 45566677899999999886544
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=297.87 Aligned_cols=301 Identities=13% Similarity=0.129 Sum_probs=211.2
Q ss_pred chhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhccccccccc-ceEEEEEcccccchhHHHHHH---
Q 039334 2 DSERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKNKVIASSSC-YTTLWINKAEKYSSNLLEEAI--- 75 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i--- 75 (782)
..||.+ +++++|.+++.. ++.++|+|+||||+||||||+.+|++..+.+.+| +.++||+++.. +...++..+
T Consensus 125 ~~vGR~-~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 125 VFVTRK-KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SCCCCH-HHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred eecccH-HHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 357887 899999999963 4678999999999999999999999844313457 57999999765 333333333
Q ss_pred HHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccC--ceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCC
Q 039334 76 SRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDK--KNYHLVLDGEGINEMDENELVKEASSDFKNLLPSV 153 (782)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~ 153 (782)
+..++.... ... ....+.+.....+++. +.+ +++||||||+|+. ..+.. +
T Consensus 203 ~~~l~~~~~-~~~------~~~~~~~~~~~~l~~~-----l~~~~~~~LLVLDdv~~~---------~~l~~----l--- 254 (591)
T 1z6t_A 203 CTRLDQDES-FSQ------RLPLNIEEAKDRLRIL-----MLRKHPRSLLILDDVWDS---------WVLKA----F--- 254 (591)
T ss_dssp HHHHCSSCC-SCS------SCCCSHHHHHHHHHHH-----HHHTCTTCEEEEEEECCH---------HHHHT----T---
T ss_pred HHHhccccc-ccc------CCCCCHHHHHHHHHHH-----HccCCCCeEEEEeCCCCH---------HHHHH----h---
Confidence 334432100 000 0012233445555555 333 7899999999964 11222 2
Q ss_pred CCCCcEEEEEeeccccCC----Ceeec---CCCCHHHHHHHHHhhhcc-ccchhHHHHHHHHhcCCcHHHHHHHHHHHhh
Q 039334 154 QPDHLKIIMTRRTTKQSG----KVIKF---PSMSTEESLNLLKNEFSD-HQVSGELFEFIAEKGRRSPAAITMIAKALKK 225 (782)
Q Consensus 154 ~~~gs~IivTTr~~~~~~----~~~~l---~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~i~~~c~glPlai~~~~~~l~~ 225 (782)
++|++||||||++.++. ..+++ ++|+.+|+++||.+..+. ....++.+.+|+++|+|+|+|+..+|..++.
T Consensus 255 -~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~ 333 (591)
T 1z6t_A 255 -DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRD 333 (591)
T ss_dssp -CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence 25799999999986543 45555 589999999999994333 2223467899999999999999999999988
Q ss_pred ccccchhHHHHHHhhcccc------CCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHHHHHHHHHcCCC
Q 039334 226 VVQRDSRDLASAIGKAAYY------EKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNVLITHWIMEGYF 299 (782)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~Li~~Wiaegfi 299 (782)
.+. .|.+....+...... ......+..++..||+.||.+ .|.||++||+||+++ .|+...++..|.+++
T Consensus 334 ~~~-~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~-~i~~~~l~~l~~~~~-- 408 (591)
T 1z6t_A 334 FPN-RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDV-KVPTKVLCILWDMET-- 408 (591)
T ss_dssp STT-CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTC-CEEHHHHHHHHTCCH--
T ss_pred Cch-hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCC-ccCHHHHHHHhccCH--
Confidence 653 344444555432211 112346788899999999996 999999999999999 899999999996431
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhccCceeccCcceehhhhhHhhhhhhhcc
Q 039334 300 EKDREVFELEKAYRKAHGALMDLIDRGILKAQDVNIVVMEGAALNMIDSRRKG 352 (782)
Q Consensus 300 ~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (782)
+.+..++++|++++|+....... ...+.||+++++.+..
T Consensus 409 -------------~~~~~~l~~L~~~~Ll~~~~~~~-~~~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 409 -------------EEVEDILQEFVNKSLLFCDRNGK-SFRYYLHDLQVDFLTE 447 (591)
T ss_dssp -------------HHHHHHHHHHHHTTSSEEEEETT-EEEEECCHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHhCcCeEEecCCC-ccEEEEcHHHHHHHHh
Confidence 23567899999999998544321 2346788888776643
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.8e-29 Score=293.59 Aligned_cols=341 Identities=16% Similarity=0.204 Sum_probs=212.8
Q ss_pred hcCCCCceEEEecCCCCCC------------------CCcc----CCCCccEEEEecCCCCCC-CccccCCCCCcEEEee
Q 039334 414 FNLMPKLQVLAIFKPTFKS------------------LMSS----SFERLTVLVLRNCDMLED-ITGIKELKTLSVLEIS 470 (782)
Q Consensus 414 ~~~~~~L~~L~l~~~~~~~------------------~~~~----~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~ 470 (782)
+.++++|++|++++|.+.+ +|.. .+++|++|+|++|.+... |..+.++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 4556677777777777666 4443 466777777777665443 3456677777777777
Q ss_pred cCCCCC--CCchHHhcCC-------CCccEEEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEE
Q 039334 471 GASSLK--SNPDELFDGM-------AQLQSLNLSRCPMKSLPS---LPKLTKLRFLILRQCSCLEYMPSLKELHELEIID 538 (782)
Q Consensus 471 ~~~~~~--~lp~~~~~~l-------~~L~~L~l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 538 (782)
+|..+. .+|..+ +.+ ++|++|++++|.++.+|. +..+++|+.|++++|.+. .+|.+..+++|+.|+
T Consensus 524 ~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~ 601 (876)
T 4ecn_A 524 CNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK 601 (876)
T ss_dssp TCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEE
T ss_pred CCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEE
Confidence 664233 355554 333 367777777776666665 666677777777766654 556666666777777
Q ss_pred ccCCCCCCcccccccCCCCC-ccEEEccCCCCCCCcC-cCCC--CcccEEEecCcCCCCCCCCCC------CCCCCCEEE
Q 039334 539 LSGATSLSSFQQLDFSSHTN-LQMVDLSYTQIPWLPK-FTDL--KHLSRILLRGCRKLHILPSFQ------KLHSLKILD 608 (782)
Q Consensus 539 l~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~-~~~l--~~L~~L~l~~~~~~~~~~~l~------~l~~L~~L~ 608 (782)
+++|.. . ..+..+..+++ |+.|++++|.+..+|. +..+ ++|+.|++++|.....++.+. .+++|+.|+
T Consensus 602 Ls~N~l-~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQI-E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCC-S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCcc-c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 766653 2 22344556666 6666666666665553 2222 236666666655443333221 223455555
Q ss_pred cccCCCCCcccccc-----------CCCCCCCCCC----C-------CCCccEEEecCCCCCCCCCc-CC--CCCCCCEE
Q 039334 609 LSEVGFSNFTEIKL-----------KDPSTQQLPF----L-------PCSLSELYLRKCSALEHLPL-TT--ALKNLELL 663 (782)
Q Consensus 609 l~~~~l~~~~~~~~-----------~~~~~~~l~~----~-------~~~L~~L~l~~~~~l~~l~~-~~--~l~~L~~L 663 (782)
+++|.++.++...+ .......+|. . .++|+.|+|++|. +..+|. +. .+++|+.|
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEE
Confidence 55555443332111 0000011111 0 0189999999994 557776 54 89999999
Q ss_pred EeecCCCccccc---cccccceeeccc------cccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEecc
Q 039334 664 DLSNTNLKKLPS---ELCNLRKLLLNN------CLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDIS 732 (782)
Q Consensus 664 ~L~~~~l~~l~~---~l~~L~~L~L~~------~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~ 732 (782)
+|++|.++.+|. .+++|+.|+|++ |.....+| .+.++++|+.|+|++| .++.+|. +. ++|+.|+++
T Consensus 759 ~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp ECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECC
T ss_pred EeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECC
Confidence 999999999886 788999999976 44455666 5888999999999999 5689997 54 799999999
Q ss_pred CCCCCCCC-hhhhCCCCCCcccEEeCCCCCCCCC
Q 039334 733 NTGIREIP-DEILELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 733 ~~~l~~lp-~~~~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
+|++..++ ..+.... .+..+.+.+|.+..+
T Consensus 836 ~N~l~~i~~~~~~~~~---~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 836 DNPNISIDVTSVCPYI---EAGMYVLLYDKTQDI 866 (876)
T ss_dssp SCTTCEEECGGGHHHH---HTTCCEEECCTTSEE
T ss_pred CCCCCccChHHccccc---cchheeecCCCcccc
Confidence 99987543 2222222 223445555655543
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2e-29 Score=290.26 Aligned_cols=319 Identities=18% Similarity=0.272 Sum_probs=220.5
Q ss_pred hcCCCCceEEEecCCCCCC------------------CCcc----CCCCccEEEEecCCCCCC-CccccCCCCCcEEEee
Q 039334 414 FNLMPKLQVLAIFKPTFKS------------------LMSS----SFERLTVLVLRNCDMLED-ITGIKELKTLSVLEIS 470 (782)
Q Consensus 414 ~~~~~~L~~L~l~~~~~~~------------------~~~~----~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~ 470 (782)
+.++++|++|++++|.+.+ +|.. .+++|++|++++|.+.+. |..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5567788888888887777 5554 467788888887776554 4467778888888887
Q ss_pred cCCCCC--CCchHHhcCC------CCccEEEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEc
Q 039334 471 GASSLK--SNPDELFDGM------AQLQSLNLSRCPMKSLPS---LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDL 539 (782)
Q Consensus 471 ~~~~~~--~lp~~~~~~l------~~L~~L~l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 539 (782)
+|..+. .+|..+ +.+ ++|++|++++|.++.+|. ++.+++|++|++++|.+.+.+|.+..+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred CCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence 775233 467665 544 778888888877777775 67777788888877776656666677777777777
Q ss_pred cCCCCCCcccccccCCCCC-ccEEEccCCCCCCCcC-cCC--CCcccEEEecCcCCCCCCC-CCC-------CCCCCCEE
Q 039334 540 SGATSLSSFQQLDFSSHTN-LQMVDLSYTQIPWLPK-FTD--LKHLSRILLRGCRKLHILP-SFQ-------KLHSLKIL 607 (782)
Q Consensus 540 ~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~l~~-~~~--l~~L~~L~l~~~~~~~~~~-~l~-------~l~~L~~L 607 (782)
++|.. . ..+..+..+++ |+.|++++|.+..+|. +.. +++|+.|++++|......| .+. .+++|+.|
T Consensus 361 ~~N~l-~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQI-T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEE-E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCcc-c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 77753 2 22344666666 7777777777776663 333 2367777777665554333 233 45566666
Q ss_pred EcccCCCCCccccccCC-----------CCCCCCCC-CC----------CCccEEEecCCCCCCCCCc-CC--CCCCCCE
Q 039334 608 DLSEVGFSNFTEIKLKD-----------PSTQQLPF-LP----------CSLSELYLRKCSALEHLPL-TT--ALKNLEL 662 (782)
Q Consensus 608 ~l~~~~l~~~~~~~~~~-----------~~~~~l~~-~~----------~~L~~L~l~~~~~l~~l~~-~~--~l~~L~~ 662 (782)
++++|.++.++...+.. .....+|. .. ++|+.|++++|. +..+|. +. .+++|+.
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVG 517 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCE
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCE
Confidence 66666665443321110 00111111 00 189999999985 447776 54 8999999
Q ss_pred EEeecCCCccccc---cccccceeeccc------cccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEec
Q 039334 663 LDLSNTNLKKLPS---ELCNLRKLLLNN------CLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDI 731 (782)
Q Consensus 663 L~L~~~~l~~l~~---~l~~L~~L~L~~------~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l 731 (782)
|++++|.++.+|. .+++|+.|++++ |.....+| .+..+++|+.|++++| .++.+|. +. ++|+.|++
T Consensus 518 L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDI 594 (636)
T ss_dssp EECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEEC
T ss_pred EECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEEC
Confidence 9999999999887 688999999954 44456677 5888999999999999 5689997 44 89999999
Q ss_pred cCCCCCCC
Q 039334 732 SNTGIREI 739 (782)
Q Consensus 732 ~~~~l~~l 739 (782)
++|++..+
T Consensus 595 s~N~l~~~ 602 (636)
T 4eco_A 595 KDNPNISI 602 (636)
T ss_dssp CSCTTCEE
T ss_pred cCCCCccc
Confidence 99987743
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.9e-30 Score=303.22 Aligned_cols=362 Identities=20% Similarity=0.213 Sum_probs=210.0
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCC-CCcc---CCCCccEEEEecCCCCCC-CccccCCCCCc
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKS-LMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLS 465 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~ 465 (782)
...+++.|.+++|.+.+..+.. .+++|++|++.+|.+.+ ++.. .++.|++|++++|.+... +..++++++|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred cCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 4456666666666655444332 45666666666666542 2222 236666666666665533 34566666666
Q ss_pred EEEeecCCCCCCCchHHhcCCCCccEEEccCCCCC-CCCC-CCCCC-CCcEEEccC------------------------
Q 039334 466 VLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMK-SLPS-LPKLT-KLRFLILRQ------------------------ 518 (782)
Q Consensus 466 ~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~-~lp~-l~~l~-~L~~L~l~~------------------------ 518 (782)
+|++++|...+.+|...+..+++|++|++++|.++ .+|. +..++ +|+.|++++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 66666664333556554466666666666666554 3444 44443 444454444
Q ss_pred --CCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCC-Cc-CcCCCCcccEEEecCcCCCC
Q 039334 519 --CSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPW-LP-KFTDLKHLSRILLRGCRKLH 593 (782)
Q Consensus 519 --~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~~~~ 593 (782)
|.+.+.+|. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+.. +| .+..+++|+.|++++|....
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 443333332 4555555555555554 223334445555566666666655552 33 35555666666666655543
Q ss_pred CCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCc
Q 039334 594 ILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLK 671 (782)
Q Consensus 594 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~ 671 (782)
.+| .+..+++|+.|++++|.+++..+..+.. .++|+.|++++|.....+|. +..+++|+.|++++|.+.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---------LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG---------CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhc---------CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 333 3555666666666666655433322221 12677777777765555554 666777777777776554
Q ss_pred -cccc-------------------------------------------------------------------------cc
Q 039334 672 -KLPS-------------------------------------------------------------------------EL 677 (782)
Q Consensus 672 -~l~~-------------------------------------------------------------------------~l 677 (782)
.+|. .+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 2322 13
Q ss_pred cccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCC-CCChhhhCCCCCCcccE
Q 039334 678 CNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIR-EIPDEILELSRPKIIRE 754 (782)
Q Consensus 678 ~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~~ 754 (782)
++|+.|++++|.....+| .++++++|+.|++++|.....+|. ++.+++|+.|++++|+++ .+|..+.+++ .|+.
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~---~L~~ 708 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT---MLTE 708 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC---CCSE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC---CCCE
Confidence 556777777775555666 477778888888888755556776 777888888888888877 6777765544 4447
Q ss_pred EeCCCCCCCCCccc
Q 039334 755 VDEETNQAEDVNRG 768 (782)
Q Consensus 755 l~~~~n~~~~~~~~ 768 (782)
||+++|+++...+.
T Consensus 709 L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 709 IDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCSSEEEEECCS
T ss_pred EECcCCcccccCCC
Confidence 78888888765443
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.2e-29 Score=296.85 Aligned_cols=375 Identities=22% Similarity=0.216 Sum_probs=262.8
Q ss_pred cCCCCceEEEccCCCCCCCChhhH--hcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcE
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTF--FNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSV 466 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 466 (782)
....++++|++++|.+.+..+..+ +.++++|++|++++|.+.+..+. .+++|++|++++|.+...++.++++++|++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 227 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCE
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCE
Confidence 356788899999988877666553 67789999999999988765554 889999999999999887777999999999
Q ss_pred EEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCC-ccC-CCcccEEEccCCCC
Q 039334 467 LEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPS-LKE-LHELEIIDLSGATS 544 (782)
Q Consensus 467 L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~-~~~-l~~L~~L~l~~~~~ 544 (782)
|++++|...+.+|..+ ..+++|++|++++|.+........+++|++|++++|.+.+.+|. +.. +++|+.|++++|.
T Consensus 228 L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~- 305 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH- 305 (768)
T ss_dssp EECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-
T ss_pred EECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-
Confidence 9999986444556554 89999999999999887533322788888888888877656665 444 4888888888876
Q ss_pred CCcccccccCCCCCccEEEccCCCCC-CCc--CcCCCCcccEEEecCcCCCCCCC-CCCCCC-CCCEEEcccCCCCCccc
Q 039334 545 LSSFQQLDFSSHTNLQMVDLSYTQIP-WLP--KFTDLKHLSRILLRGCRKLHILP-SFQKLH-SLKILDLSEVGFSNFTE 619 (782)
Q Consensus 545 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~--~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l~~~~~ 619 (782)
+....+..+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.....++ .+..++ +|+.|++++|.+++...
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 34445566778888888888888776 555 26777888888887776553333 344444 66666666665543211
Q ss_pred cccCCCCCC--------------CCC---CCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCc-cccc---cc
Q 039334 620 IKLKDPSTQ--------------QLP---FLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLK-KLPS---EL 677 (782)
Q Consensus 620 ~~~~~~~~~--------------~l~---~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~-~l~~---~l 677 (782)
..+...... .+| .-..+|+.|++++|......|. +..+++|+.|++++|.+. .+|. .+
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 111100000 000 0013677777777755545554 667778888888887776 4444 56
Q ss_pred cccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCC-CCChhhhCCCCCCcccE
Q 039334 678 CNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIR-EIPDEILELSRPKIIRE 754 (782)
Q Consensus 678 ~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~~ 754 (782)
++|+.|++++|.....+| .+.++++|+.|++++|.....+|. +..+++|+.|++++|+++ .+|..+..+++ |+.
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~ 542 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS---LIW 542 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT---CCE
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC---CCE
Confidence 778888888876555666 477788888888888854446676 777888888888888877 67777665544 457
Q ss_pred EeCCCCCCC-CCcccc
Q 039334 755 VDEETNQAE-DVNRGR 769 (782)
Q Consensus 755 l~~~~n~~~-~~~~~~ 769 (782)
|++++|.++ .+|...
T Consensus 543 L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAM 558 (768)
T ss_dssp EECCSSEEESBCCGGG
T ss_pred EECCCCccCCcCChHH
Confidence 788888887 455443
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.4e-28 Score=283.32 Aligned_cols=373 Identities=18% Similarity=0.131 Sum_probs=210.3
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCC-ccccCCCCCc
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDI-TGIKELKTLS 465 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~ 465 (782)
....+++.|++++|.+....+ ..|..+++|++|++++|.+..+++. .+++|++|++++|.+...+ ..++++++|+
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred cCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 344556666666655543222 2344556666666666666555332 5566666666666555444 3456666666
Q ss_pred EEEeecCCCCC-CCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCc----EEEccCCCCCCCCCCccCCCcccEEE
Q 039334 466 VLEISGASSLK-SNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLR----FLILRQCSCLEYMPSLKELHELEIID 538 (782)
Q Consensus 466 ~L~L~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~----~L~l~~~~~~~~~~~~~~l~~L~~L~ 538 (782)
+|++++|.... .+|..+ +++++|++|++++|.++.++. +..+++|+ .|++++|.+....+......+|+.|+
T Consensus 132 ~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp EEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred EEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 66666654221 345443 566666666666665554432 33333332 34444443322222222223555565
Q ss_pred ccCCCCC---------------------------------------------------------Cccccc----------
Q 039334 539 LSGATSL---------------------------------------------------------SSFQQL---------- 551 (782)
Q Consensus 539 l~~~~~~---------------------------------------------------------~~~~~~---------- 551 (782)
++++... ....+.
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 5554311 000000
Q ss_pred -----------ccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcc--
Q 039334 552 -----------DFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFT-- 618 (782)
Q Consensus 552 -----------~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-- 618 (782)
.+..+++|+.|++++|.+..+|.+ .+++|+.|++++|...... .+..+++|+.|++++|.+++..
T Consensus 291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp EEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred EecCccchhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcch
Confidence 233344455555555555444444 4555555555554333222 3445666666666666554332
Q ss_pred ccccCCC--------CC---CCCC---CCCCCccEEEecCCCCCCCCC--cCCCCCCCCEEEeecCCCccccc----ccc
Q 039334 619 EIKLKDP--------ST---QQLP---FLPCSLSELYLRKCSALEHLP--LTTALKNLELLDLSNTNLKKLPS----ELC 678 (782)
Q Consensus 619 ~~~~~~~--------~~---~~l~---~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~L~~~~l~~l~~----~l~ 678 (782)
+..+... +. ..++ ....+|+.|++++|......+ .+..+++|+.|++++|.+...++ .++
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 1111000 00 0001 012367777777775444444 36778888888888888876433 678
Q ss_pred ccceeeccccccCCC-CC-CCCCCCcccEEecccCCCCCCC-CC-CCCCCCcCEEeccCCCCCCC-ChhhhCCCCCCccc
Q 039334 679 NLRKLLLNNCLSLTK-LP-EMKGLEKLEELRLSGCINLTEL-PN-LNDFPKLDLLDISNTGIREI-PDEILELSRPKIIR 753 (782)
Q Consensus 679 ~L~~L~L~~~~~l~~-l~-~~~~l~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~ 753 (782)
+|++|++++|..... +| .+..+++|+.|++++| .++.+ |. +..+++|+.|++++|+++.+ |..+ ..++.|+
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~ 524 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY---NQLYSLS 524 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT---TTCTTCC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHc---cCCCcCC
Confidence 899999988854442 45 4788999999999998 55554 44 88899999999999998865 5555 4556667
Q ss_pred EEeCCCCCCCCCccccc
Q 039334 754 EVDEETNQAEDVNRGRG 770 (782)
Q Consensus 754 ~l~~~~n~~~~~~~~~~ 770 (782)
.|++++|++++++.+..
T Consensus 525 ~L~l~~N~l~~~p~~~~ 541 (606)
T 3vq2_A 525 TLDCSFNRIETSKGILQ 541 (606)
T ss_dssp EEECTTSCCCCEESCGG
T ss_pred EEECCCCcCcccCHhHh
Confidence 89999999999887733
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=4.7e-28 Score=269.01 Aligned_cols=323 Identities=19% Similarity=0.274 Sum_probs=274.6
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+++++.|++.++.+..++.. .+++|++|++++|.+...++ +.++++|++|++++|. +..+++ +..+++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECC
Confidence 56899999999999888765 89999999999999887776 9999999999999985 777777 5999999999999
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 496 RCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 496 ~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+|.++.+|.+..+++|++|++++|.+. .++.+..+++|+.|++.++ .... ..+..+++|+.|++++|.+..++.+
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~--~~~~--~~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ--VTDL--KPLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEES--CCCC--GGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccC-CChhhccCCcccEeecCCc--ccCc--hhhccCCCCCEEECcCCcCCCChhh
Confidence 999999888889999999999999744 4677899999999999743 2232 3488999999999999999999889
Q ss_pred CCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCC
Q 039334 576 TDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTT 655 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~ 655 (782)
..+++|+.|++++|..... +.++.+++|+.|++++|.++.++.... .++|+.|++++|. +..++.+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~l~~-----------l~~L~~L~l~~n~-l~~~~~~~ 262 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTLAS-----------LTNLTDLDLANNQ-ISNLAPLS 262 (466)
T ss_dssp GGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGG-----------CTTCSEEECCSSC-CCCCGGGT
T ss_pred ccCCCCCEEEecCCccccc-ccccccCCCCEEECCCCCcccchhhhc-----------CCCCCEEECCCCc-cccchhhh
Confidence 9999999999999865544 337889999999999999887643211 1389999999985 45555588
Q ss_pred CCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccC
Q 039334 656 ALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISN 733 (782)
Q Consensus 656 ~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~ 733 (782)
.+++|+.|++++|.++.++. .+++|+.|++++| .++.++.+..+++|+.|++++| .++.++.+..+++|+.|++++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYN 340 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCS
T ss_pred cCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCC
Confidence 89999999999999998876 7899999999998 5666766889999999999999 566666578899999999999
Q ss_pred CCCCCCChhhhCCCCCCcccEEeCCCCCCCCCcc
Q 039334 734 TGIREIPDEILELSRPKIIREVDEETNQAEDVNR 767 (782)
Q Consensus 734 ~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~ 767 (782)
|+++.++ .+..++.|+.|++++|.+++++.
T Consensus 341 n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 341 NKVSDVS----SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCCCCG----GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CccCCch----hhccCCCCCEEeCCCCccCccch
Confidence 9998874 34667778899999999998875
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.6e-28 Score=279.03 Aligned_cols=132 Identities=26% Similarity=0.282 Sum_probs=82.8
Q ss_pred CccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc-----cccccceeeccccccCCCCC-CCCCCCcccEEec
Q 039334 636 SLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS-----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRL 708 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~-----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l 708 (782)
+|++|++++|......+. +..+++|+.|++++|.+...+. .+++|+.|++++|......+ .+..+++|++|++
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence 667777776643333333 5566777777777776654321 46677777777774433333 3667777777777
Q ss_pred ccCCCCCC--CC--C-CCCCCCcCEEeccCCCCCCC-ChhhhCCCCCCcccEEeCCCCCCCCCcccccC
Q 039334 709 SGCINLTE--LP--N-LNDFPKLDLLDISNTGIREI-PDEILELSRPKIIREVDEETNQAEDVNRGRGG 771 (782)
Q Consensus 709 ~~c~~l~~--l~--~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~~ 771 (782)
++|. +.. ++ . +..+++|+.|++++|+++.+ |..+ ..++.|+.|++++|.++.++.+..+
T Consensus 457 ~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 457 QGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred CCCC-CCccccccchhhccCCCccEEECCCCccCccChhhh---ccccCCCEEECCCCccCcCChhHhC
Confidence 7773 332 11 2 66777888888888877754 3333 4556666788888888877654443
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.5e-27 Score=272.94 Aligned_cols=363 Identities=18% Similarity=0.149 Sum_probs=216.4
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC-CccccCCCCCc
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLS 465 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~ 465 (782)
....++++|++++|.+....+. .+..+++|++|++.+|.+..+.+. .+++|++|++++|.+... .+.+..+++|+
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred cCccccCeeeCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence 3456677777777766543333 355677777777777777665332 667777777777776653 24455577777
Q ss_pred EEEeecCCCCCCCchHHhcCCCCcc--EEEccCCCCCCCCC---------------------------------------
Q 039334 466 VLEISGASSLKSNPDELFDGMAQLQ--SLNLSRCPMKSLPS--------------------------------------- 504 (782)
Q Consensus 466 ~L~L~~~~~~~~lp~~~~~~l~~L~--~L~l~~~~l~~lp~--------------------------------------- 504 (782)
+|++++|. +..+++..++.+++|+ +|++++|.++.++.
T Consensus 157 ~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~ 235 (606)
T 3t6q_A 157 VLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235 (606)
T ss_dssp EEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCC
T ss_pred EEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhh
Confidence 77777764 5555444446666666 56666665544332
Q ss_pred --------------------------------------CCCCCCCcEEEccCCCCCCCCC-CccCCCcccEEEccCCCCC
Q 039334 505 --------------------------------------LPKLTKLRFLILRQCSCLEYMP-SLKELHELEIIDLSGATSL 545 (782)
Q Consensus 505 --------------------------------------l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 545 (782)
+..+++|+.|++++|.+. .+| .+..+++|+.|++++|. +
T Consensus 236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-l 313 (606)
T 3t6q_A 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-F 313 (606)
T ss_dssp TTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC-C
T ss_pred ccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC-c
Confidence 333444444444444332 222 23444444444444443 2
Q ss_pred CcccccccCCCCCccEEEccCCCCC-CCc--CcCCCCcccEEEecCcCCCCC---CCCCCCCCCCCEEEcccCCCCCccc
Q 039334 546 SSFQQLDFSSHTNLQMVDLSYTQIP-WLP--KFTDLKHLSRILLRGCRKLHI---LPSFQKLHSLKILDLSEVGFSNFTE 619 (782)
Q Consensus 546 ~~~~~~~l~~l~~L~~L~l~~~~~~-~l~--~~~~l~~L~~L~l~~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~ 619 (782)
....+..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|..... ...+..+++|+.|++++|.+.+..+
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 2333334444444555555444433 222 244445555555554443322 1234455555555555554443322
Q ss_pred cccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCC
Q 039334 620 IKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTK 693 (782)
Q Consensus 620 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~ 693 (782)
..+.. .++|+.|++++|......+. +..+++|+.|++++|.+...+. .+++|++|++++|.....
T Consensus 394 ~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 394 EAFKE---------CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp TTTTT---------CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred HHhcC---------CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 22211 23899999998865444332 6788899999999998876543 578899999998854331
Q ss_pred -CC---CCCCCCcccEEecccCCCCCCC-CC-CCCCCCcCEEeccCCCCCCC-ChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 694 -LP---EMKGLEKLEELRLSGCINLTEL-PN-LNDFPKLDLLDISNTGIREI-PDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 694 -l~---~~~~l~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
++ .+..+++|+.|++++| .++.+ |. +..+++|+.|++++|+++.+ |..+ .+++.| .|++++|.++.++
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL---SHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG---TTCCSC-EEECCSSCCCCCC
T ss_pred ccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHh---Cccccc-EEECcCCcccccC
Confidence 22 3678889999999998 55555 44 88899999999999988854 4444 556666 8899999999887
Q ss_pred cccc
Q 039334 767 RGRG 770 (782)
Q Consensus 767 ~~~~ 770 (782)
.+..
T Consensus 540 ~~~~ 543 (606)
T 3t6q_A 540 PSLL 543 (606)
T ss_dssp GGGH
T ss_pred Hhhc
Confidence 6543
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.4e-28 Score=280.13 Aligned_cols=356 Identities=19% Similarity=0.183 Sum_probs=249.5
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCC--CCccccCCCCC
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLE--DITGIKELKTL 464 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~--~~~~l~~l~~L 464 (782)
....+++.|++++|.+....+. .|.++++|++|++++|.+..+++. .+++|++|++++|.+.. .+..++++++|
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred hchhhcCEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 5678999999999998765554 467799999999999999887744 88999999999999875 46789999999
Q ss_pred cEEEeecCCCCCCCchHHhcCCCCcc----EEEccCCCCCCCCC------------------------------------
Q 039334 465 SVLEISGASSLKSNPDELFDGMAQLQ----SLNLSRCPMKSLPS------------------------------------ 504 (782)
Q Consensus 465 ~~L~L~~~~~~~~lp~~~~~~l~~L~----~L~l~~~~l~~lp~------------------------------------ 504 (782)
++|++++|. +..++...++.+.+|+ +|++++|.++.+|.
T Consensus 156 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l 234 (606)
T 3vq2_A 156 VHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234 (606)
T ss_dssp CEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEE
T ss_pred CEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccc
Confidence 999999985 5544432223333222 44444444443333
Q ss_pred --------------------------------------------------------------------CCCCCCCcEEEc
Q 039334 505 --------------------------------------------------------------------LPKLTKLRFLIL 516 (782)
Q Consensus 505 --------------------------------------------------------------------l~~l~~L~~L~l 516 (782)
+..+++|+.|++
T Consensus 235 ~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l 314 (606)
T 3vq2_A 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314 (606)
T ss_dssp EEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEE
T ss_pred cccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEc
Confidence 223333444444
Q ss_pred cCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC---c-CcCCCCcccEEEecCcCCC
Q 039334 517 RQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL---P-KFTDLKHLSRILLRGCRKL 592 (782)
Q Consensus 517 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l---~-~~~~l~~L~~L~l~~~~~~ 592 (782)
.+|.+ +.+|.+ .+++|+.|+++++.... ...+..+++|+.|++++|.+..+ + .+..+++|+.|++++|...
T Consensus 315 ~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~---~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 315 IRCQL-KQFPTL-DLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp ESCCC-SSCCCC-CCSSCCEEEEESCSSCE---ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred ccccC-cccccC-CCCccceeeccCCcCcc---chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence 44433 333333 44444444444443221 12344566666666666665543 2 3556677777777776654
Q ss_pred CCCCCCCCCCCCCEEEcccCCCCCccc-cccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCC
Q 039334 593 HILPSFQKLHSLKILDLSEVGFSNFTE-IKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNL 670 (782)
Q Consensus 593 ~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l 670 (782)
.....+..+++|+.|++++|.+.+..+ ..+.. .++|+.|++++|......|. +..+++|+.|++++|.+
T Consensus 390 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS---------LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp EECCCCTTCTTCCEEECTTSEEESTTTTTTTTT---------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred cchhhccCCCCCCeeECCCCccCCccChhhhhc---------cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 444567777888888888877665543 11111 23899999999976665665 78899999999999998
Q ss_pred cc--ccc---cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCC-CC-CCCCCCcCEEeccCCCCCCCChh
Q 039334 671 KK--LPS---ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTEL-PN-LNDFPKLDLLDISNTGIREIPDE 742 (782)
Q Consensus 671 ~~--l~~---~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~l~~lp~~ 742 (782)
.. +|. .+++|+.|++++|......| .+.++++|+.|++++| .++.+ |. +..+++|+.|++++|+++.+|..
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 85 454 67999999999995444444 4889999999999999 55555 55 89999999999999999999988
Q ss_pred hhCCCCCCcccEEeCCCCCCCC
Q 039334 743 ILELSRPKIIREVDEETNQAED 764 (782)
Q Consensus 743 ~~~l~~L~~L~~l~~~~n~~~~ 764 (782)
+..++. .|+.+++++|++.-
T Consensus 540 ~~~l~~--~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 540 LQHFPK--SLAFFNLTNNSVAC 559 (606)
T ss_dssp GGGSCT--TCCEEECCSCCCCC
T ss_pred Hhhhcc--cCcEEEccCCCccc
Confidence 766542 46689999999975
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=7.7e-28 Score=256.81 Aligned_cols=300 Identities=17% Similarity=0.263 Sum_probs=180.6
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+++|+.|++.++.+..++.. .+++|++|++++|.+...++ +..+++|++|++++|. +..++. +..+++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECc
Confidence 56666666666666555443 55666666666665554433 6666666666666653 444442 3566666666666
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 496 RCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 496 ~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+|.++.+|.+..+++|++|++++|.....++.+..+++|+.|+++++.. .... .+..+++|+.|++++|.+..++.
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~--~~~~l~~L~~L~l~~n~l~~~~~- 194 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVT--PIANLTDLYSLSLNYNQIEDISP- 194 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCG--GGGGCTTCSEEECTTSCCCCCGG-
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCch--hhccCCCCCEEEccCCccccccc-
Confidence 6666555555556666666666665444444455555555555555442 2211 14444555555555554444444
Q ss_pred CCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCC
Q 039334 576 TDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTT 655 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~ 655 (782)
+..+++|+.|++++|.+....... . .++|++|++++| .+..++.+.
T Consensus 195 ----------------------~~~l~~L~~L~l~~n~l~~~~~~~--~---------~~~L~~L~l~~n-~l~~~~~~~ 240 (347)
T 4fmz_A 195 ----------------------LASLTSLHYFTAYVNQITDITPVA--N---------MTRLNSLKIGNN-KITDLSPLA 240 (347)
T ss_dssp ----------------------GGGCTTCCEEECCSSCCCCCGGGG--G---------CTTCCEEECCSS-CCCCCGGGT
T ss_pred ----------------------ccCCCccceeecccCCCCCCchhh--c---------CCcCCEEEccCC-ccCCCcchh
Confidence 444455555555555444433210 0 115555555555 233344455
Q ss_pred CCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCC-C-CCCCCCcCEEec
Q 039334 656 ALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELP-N-LNDFPKLDLLDI 731 (782)
Q Consensus 656 ~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~-~-~~~l~~L~~L~l 731 (782)
.+++|+.|++++|.++.++. .+++|++|++++| .++.++.+..+++|+.|++++| .++..+ . +..+++|+.|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEEC
T ss_pred cCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEc
Confidence 67778888888887776654 6778888888887 5666677788899999999998 455443 3 778999999999
Q ss_pred cCCCCCCCChhhhCCCCCCcccEEeCCCCCCCC
Q 039334 732 SNTGIREIPDEILELSRPKIIREVDEETNQAED 764 (782)
Q Consensus 732 ~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~ 764 (782)
++|+++.+++ + ..++.|+.+++++|.|++
T Consensus 319 ~~n~l~~~~~-~---~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 319 SQNHITDIRP-L---ASLSKMDSADFANQVIKK 347 (347)
T ss_dssp CSSSCCCCGG-G---GGCTTCSEESSSCC----
T ss_pred cCCccccccC-h---hhhhccceeehhhhcccC
Confidence 9999987765 3 456666788999998863
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=283.65 Aligned_cols=373 Identities=19% Similarity=0.223 Sum_probs=198.8
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC-Ccc--ccCCCC
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED-ITG--IKELKT 463 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~-~~~--l~~l~~ 463 (782)
....+++.|++++|.....++...|.++++|++|++++|.+..+.+. .+++|++|++++|.+... +.. +.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 34455566666655444444444455566666666666665554332 555666666666555442 222 555666
Q ss_pred CcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCC---------------------------CC-CCCCCC-----
Q 039334 464 LSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL---------------------------PS-LPKLTK----- 510 (782)
Q Consensus 464 L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l---------------------------p~-l~~l~~----- 510 (782)
|++|++++|......+...++++++|++|++++|.++.+ |. +..+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 666666655422222222235566666666655554332 11 222222
Q ss_pred -CcEEEccCCCCCCCCCC-------------------------------------ccC--CCcccEEEccCCCCCCcccc
Q 039334 511 -LRFLILRQCSCLEYMPS-------------------------------------LKE--LHELEIIDLSGATSLSSFQQ 550 (782)
Q Consensus 511 -L~~L~l~~~~~~~~~~~-------------------------------------~~~--l~~L~~L~l~~~~~~~~~~~ 550 (782)
|+.|++++|.+....+. +.. .++|+.|+++++. +....+
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNS 283 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECS
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccCh
Confidence 55555555432211110 000 1345555555443 222333
Q ss_pred cccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccC----
Q 039334 551 LDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLK---- 623 (782)
Q Consensus 551 ~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~---- 623 (782)
..+..+++|+.|++++|.+..++ .+..+++|+.|++++|......+ .+..+++|+.|++++|.+..+....+.
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 34444555555555555544332 34444555555555444332222 244444444444444444333322111
Q ss_pred --------------------------CCCCCCCCCCCCCccEEEecCCCCCCCCCc---CCCCCCCCEEEeecCCCcccc
Q 039334 624 --------------------------DPSTQQLPFLPCSLSELYLRKCSALEHLPL---TTALKNLELLDLSNTNLKKLP 674 (782)
Q Consensus 624 --------------------------~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~---~~~l~~L~~L~L~~~~l~~l~ 674 (782)
......++....+++.|++++|. +..++. +..+++|+.|++++|.++.++
T Consensus 364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCc-cccCchhhhhhcCCccceeeCCCCcccccc
Confidence 11111122222334444444432 222221 346788999999998887543
Q ss_pred c-----cccccceeeccccccCCCC------C-CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCCC
Q 039334 675 S-----ELCNLRKLLLNNCLSLTKL------P-EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIP 740 (782)
Q Consensus 675 ~-----~l~~L~~L~L~~~~~l~~l------~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~lp 740 (782)
. .+++|+.|++++|. ++.. + .+.++++|+.|++++| .++.++. +..+++|+.|++++|+++.+|
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccC
Confidence 3 56888999998884 3221 1 3677899999999998 6666665 788999999999999999887
Q ss_pred hhhhCCCCCCcccEEeCCCCCCCCCccccc
Q 039334 741 DEILELSRPKIIREVDEETNQAEDVNRGRG 770 (782)
Q Consensus 741 ~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~ 770 (782)
..... +.|+.|++++|+++.++.+..
T Consensus 521 ~~~~~----~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 521 HNDLP----ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp CCCCC----SCCCEEEEEEECCCCCCSCCC
T ss_pred hhhhh----ccccEEECCCCcCCCCChhHh
Confidence 66543 677788999999998887654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.6e-28 Score=274.91 Aligned_cols=356 Identities=19% Similarity=0.226 Sum_probs=186.1
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC--CccccCCCCC
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED--ITGIKELKTL 464 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~--~~~l~~l~~L 464 (782)
....+++.|++++|.+....+ ..|..+++|++|++++|.+..+++. .+++|++|++++|.+... +..++++++|
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hcCCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 345566666666666554322 3344566666666666666665543 566666666666665532 3456666666
Q ss_pred cEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCC-CCC-CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEcc
Q 039334 465 SVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKS-LPS-LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLS 540 (782)
Q Consensus 465 ~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~-lp~-l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~ 540 (782)
++|++++|..++.+|...+..+++|++|++++|.++. .|. +..+++|++|+++.|... .++. ...+++|+.|+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEcc
Confidence 6666666654555554334666666666666666654 444 666666666666665432 2222 2456777777777
Q ss_pred CCCCCCcc--cccc----------------------------cCCCC---------------------------------
Q 039334 541 GATSLSSF--QQLD----------------------------FSSHT--------------------------------- 557 (782)
Q Consensus 541 ~~~~~~~~--~~~~----------------------------l~~l~--------------------------------- 557 (782)
++...... .... +..++
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 76532110 0000 01111
Q ss_pred --------------------------CccEEEccCCCCCCCcC-c-CCCCcccEEEecCcCCCCCC----CCCCCCCCCC
Q 039334 558 --------------------------NLQMVDLSYTQIPWLPK-F-TDLKHLSRILLRGCRKLHIL----PSFQKLHSLK 605 (782)
Q Consensus 558 --------------------------~L~~L~l~~~~~~~l~~-~-~~l~~L~~L~l~~~~~~~~~----~~l~~l~~L~ 605 (782)
+|+.|++++|.+..+|. + ..+++|+.|++++|...... ..++.+++|+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 22233333333333331 1 23444444444444333221 1134444555
Q ss_pred EEEcccCCCCCccc--cccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCcccccc-ccccc
Q 039334 606 ILDLSEVGFSNFTE--IKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPSE-LCNLR 681 (782)
Q Consensus 606 ~L~l~~~~l~~~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~~-l~~L~ 681 (782)
.|++++|.++++.. ..+.. .++|+.|++++| .+..+|. +..+++|+.|++++|.++.+|.. +++|+
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~---------l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~ 434 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLT---------LKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGG---------CTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCS
T ss_pred EEEccCCcccccccchhhhhc---------CCCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCce
Confidence 55555554444321 01110 125666666665 3334443 45556666666666666655552 34666
Q ss_pred eeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCCCCChh-hhCCCCCCcccEEeCCCC
Q 039334 682 KLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIREIPDE-ILELSRPKIIREVDEETN 760 (782)
Q Consensus 682 ~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~~l~~~~n 760 (782)
.|++++| .++.++ ..+++|++|++++| .++.+|....+++|+.|++++|+++.+|+. +.. ++.|+.+++++|
T Consensus 435 ~L~Ls~N-~l~~~~--~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~l~~N 507 (549)
T 2z81_A 435 VLDVSNN-NLDSFS--LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR---LTSLQKIWLHTN 507 (549)
T ss_dssp EEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGG---CTTCCEEECCSS
T ss_pred EEECCCC-Chhhhc--ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCHHHHhc---CcccCEEEecCC
Confidence 6666666 333332 35666777777766 556666644566777777777776655443 333 344446677777
Q ss_pred CCCC
Q 039334 761 QAED 764 (782)
Q Consensus 761 ~~~~ 764 (782)
++..
T Consensus 508 ~~~~ 511 (549)
T 2z81_A 508 PWDC 511 (549)
T ss_dssp CBCC
T ss_pred CccC
Confidence 6643
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.7e-27 Score=254.11 Aligned_cols=301 Identities=19% Similarity=0.311 Sum_probs=221.1
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEE
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLE 468 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ 468 (782)
...++++.|.++++.+... + .+..+++|++|++++|.+..+++. .+++|++|++++|.+.. ++.+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~--~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q--GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-ISALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccc-h--hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-chHHcCCCcCCEEE
Confidence 3567899999999987643 2 266799999999999999888765 89999999999998766 46799999999999
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCC-CCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCc
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPM-KSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSS 547 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l-~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 547 (782)
+++|. +..++. +..+++|++|++++|.. ..++.+..+++|++|++++|... .++.+..+++|+.|++++|. +..
T Consensus 117 l~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~ 191 (347)
T 4fmz_A 117 LNEDN-ISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQ-IED 191 (347)
T ss_dssp CTTSC-CCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECTTSC-CCC
T ss_pred CcCCc-ccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-CchhhccCCCCCEEEccCCc-ccc
Confidence 99985 777877 58999999999999964 44444899999999999999754 45558999999999999987 344
Q ss_pred ccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCC
Q 039334 548 FQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPST 627 (782)
Q Consensus 548 ~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 627 (782)
.. .+..+++|+.+++++|.+..++.+..+++|+.|++++|..... +.+..+++|+.|++++|.++.+
T Consensus 192 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---------- 258 (347)
T 4fmz_A 192 IS--PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDI---------- 258 (347)
T ss_dssp CG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC----------
T ss_pred cc--cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cchhcCCCCCEEECCCCccCCC----------
Confidence 33 2778999999999999988887777888888888888755433 3377777777777777766543
Q ss_pred CCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCC-CCCCCCccc
Q 039334 628 QQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLP-EMKGLEKLE 704 (782)
Q Consensus 628 ~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~ 704 (782)
+.+..+++|+.|++++|.++.++. .+++|+.|++++|......+ .+..+++|+
T Consensus 259 ------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 259 ------------------------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp ------------------------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred ------------------------hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 223344555555555555555443 45566666666663222222 245566777
Q ss_pred EEecccCCCCCCCCCCCCCCCcCEEeccCCCCC
Q 039334 705 ELRLSGCINLTELPNLNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 705 ~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~ 737 (782)
.|++++| .++.++.+..+++|+.|++++|+|+
T Consensus 315 ~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQN-HITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSS-SCCCCGGGGGCTTCSEESSSCC---
T ss_pred EEEccCC-ccccccChhhhhccceeehhhhccc
Confidence 7777776 3555544566777777777777654
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=1e-26 Score=271.56 Aligned_cols=373 Identities=21% Similarity=0.232 Sum_probs=190.5
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCcEEE
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLSVLE 468 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~ 468 (782)
.+++.|++++|.+... +...|.++++|++|++++|.+..+++. .+++|++|++++|.+...++ .|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 3455555555555432 223344455566666655555555443 45555666665555554443 355555566666
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC---ccCCCcccEEEccCCC
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS---LKELHELEIIDLSGAT 543 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~ 543 (782)
+++|. +..+++..++.+++|++|++++|.++.++. +..+++|++|++++|.+....+. ...+++|+.|++++|.
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 65553 444443333555555555555555554332 55555555555555543322221 1223444444444442
Q ss_pred C--------------------------------------------------CCcccccccCCCC--CccEEEccCCCCCC
Q 039334 544 S--------------------------------------------------LSSFQQLDFSSHT--NLQMVDLSYTQIPW 571 (782)
Q Consensus 544 ~--------------------------------------------------~~~~~~~~l~~l~--~L~~L~l~~~~~~~ 571 (782)
. +....+..+..++ +|+.|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 1 1111111222222 25555555554443
Q ss_pred Cc--CcCCCCcccEEEecCcCCCCCCC----------------------------------CCCCCCCCCEEEcccCCCC
Q 039334 572 LP--KFTDLKHLSRILLRGCRKLHILP----------------------------------SFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 572 l~--~~~~l~~L~~L~l~~~~~~~~~~----------------------------------~l~~l~~L~~L~l~~~~l~ 615 (782)
++ .+..+++|+.|++++|......+ .+..+++|+.|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 32 24444555555555443322211 2333444455555444444
Q ss_pred CccccccCCCC-------------CCCCCC-----C-CCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCc-ccc
Q 039334 616 NFTEIKLKDPS-------------TQQLPF-----L-PCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLK-KLP 674 (782)
Q Consensus 616 ~~~~~~~~~~~-------------~~~l~~-----~-~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~-~l~ 674 (782)
++.+..+.... ...++. . ..+|+.|++++|......|. +..+++|+.|++++|.+. .+|
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 33322221110 000000 0 02444555554432222232 556667777777777665 244
Q ss_pred c----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCC--CCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCC
Q 039334 675 S----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCIN--LTELPN-LNDFPKLDLLDISNTGIREIPDEILEL 746 (782)
Q Consensus 675 ~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~--l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l 746 (782)
. .+++|++|++++|......+ .+..+++|+.|++++|.. +..+|. +..+++|+.|++++|+++.+|... +
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~--~ 500 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM--L 500 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT--T
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh--h
Confidence 2 56667777777764322222 466677788888877632 234566 888899999999999988777542 3
Q ss_pred CCCCcccEEeCCCCCCCCCcccc
Q 039334 747 SRPKIIREVDEETNQAEDVNRGR 769 (782)
Q Consensus 747 ~~L~~L~~l~~~~n~~~~~~~~~ 769 (782)
..++.|+.|++++|.++.++..+
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTT
T ss_pred ccccccCEEeCCCCCccccchhh
Confidence 56677778899999998876543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=267.48 Aligned_cols=363 Identities=19% Similarity=0.221 Sum_probs=198.4
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCccccCCCCCcEEEe
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDITGIKELKTLSVLEI 469 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 469 (782)
.+++.|++++|.+....+ ..|..+++|++|++++|.+..+.+. .+++|++|++++|.+...+.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 788899999998875544 4567789999999999998887543 788999999999988755544 8899999999
Q ss_pred ecCCCCCC--CchHHhcCCCCccEEEccCCCCCCCCCCCCCCCC--cEEEccCCCC--CCCCCC-ccC------------
Q 039334 470 SGASSLKS--NPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKL--RFLILRQCSC--LEYMPS-LKE------------ 530 (782)
Q Consensus 470 ~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L--~~L~l~~~~~--~~~~~~-~~~------------ 530 (782)
++|. +.. +|..+ +.+++|++|++++|.++. ..+..+++| +.|++++|.+ ....|. +..
T Consensus 98 ~~N~-l~~~~~p~~~-~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNA-FDALPICKEF-GNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSC-CSSCCCCGGG-GGCTTCCEEEEEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCc-cccccchhhh-ccCCcceEEEecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9986 544 55664 889999999999988775 226667777 9999998876 333332 222
Q ss_pred --------------CCcccEEEccCCCC------CCcccccccCCCCCccEEEccCCCCCC-----CcCcCCCCcccEEE
Q 039334 531 --------------LHELEIIDLSGATS------LSSFQQLDFSSHTNLQMVDLSYTQIPW-----LPKFTDLKHLSRIL 585 (782)
Q Consensus 531 --------------l~~L~~L~l~~~~~------~~~~~~~~l~~l~~L~~L~l~~~~~~~-----l~~~~~l~~L~~L~ 585 (782)
+++|+.+++++|.. +.... ..+..+++|+.|+++.+.+.. ++.....++|+.|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 44444444444320 00000 012222222222222221110 00000012344444
Q ss_pred ecCcCCCCCCC-CC-----CCCCCCCEEEcccCCCCCccc--------------cccCCCCCCC--CCCCCCCccEEEec
Q 039334 586 LRGCRKLHILP-SF-----QKLHSLKILDLSEVGFSNFTE--------------IKLKDPSTQQ--LPFLPCSLSELYLR 643 (782)
Q Consensus 586 l~~~~~~~~~~-~l-----~~l~~L~~L~l~~~~l~~~~~--------------~~~~~~~~~~--l~~~~~~L~~L~l~ 643 (782)
+++|...+.+| .+ ..+++|+.+++++|.+ .++. ..+....... .+...++|++|+++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 44433321222 12 3333444444433333 1110 0000000000 00122366677777
Q ss_pred CCCCCCCCCc-CCCCCCCCEEEeecCCCcccc---c---cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCC
Q 039334 644 KCSALEHLPL-TTALKNLELLDLSNTNLKKLP---S---ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINL 714 (782)
Q Consensus 644 ~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~---~---~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l 714 (782)
+|......|. +..+++|+.|++++|.++.++ . .+++|++|++++|.....+| .+..+++|+.|++++|...
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 6654443443 566667777777776666432 1 56667777776664333254 2455666666666666322
Q ss_pred CCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCccc
Q 039334 715 TELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVNRG 768 (782)
Q Consensus 715 ~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~~ 768 (782)
..+|. +. ++|+.|++++|+++.+|..+..+ +.|+.|++++|.+++++.+
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l---~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKL---EALQELNVASNQLKSVPDG 462 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGC---TTCCEEECCSSCCCCCCTT
T ss_pred cchhhhhc--ccCCEEECCCCcccccchhhhcC---CCCCEEECCCCcCCccCHH
Confidence 22222 21 56666666666666666655433 3334556666666666554
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=6.8e-26 Score=264.60 Aligned_cols=372 Identities=22% Similarity=0.229 Sum_probs=184.3
Q ss_pred CCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCC-ccccCCCCCcEE
Q 039334 392 LREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDI-TGIKELKTLSVL 467 (782)
Q Consensus 392 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L 467 (782)
..+++.|++++|.+.. ++...|..+++|++|++++|.+..+++. .+++|++|++++|.+...+ ..+.++++|++|
T Consensus 72 l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp CTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred ccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 3455566666555442 3333445556666666666655555432 4556666666666554443 235556666666
Q ss_pred EeecCCCCCCCchHHhc--CCCCccEEEccCCCCCCCCC--C--------------------------------------
Q 039334 468 EISGASSLKSNPDELFD--GMAQLQSLNLSRCPMKSLPS--L-------------------------------------- 505 (782)
Q Consensus 468 ~L~~~~~~~~lp~~~~~--~l~~L~~L~l~~~~l~~lp~--l-------------------------------------- 505 (782)
++++|. +..+++..+. .+++|++|++++|.++.++. +
T Consensus 151 ~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 151 LLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp ECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred EccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 666553 3433333222 33555555555554443321 2
Q ss_pred -------------CCCC--CCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 506 -------------PKLT--KLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 506 -------------~~l~--~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
..++ +|+.|++++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|+++++..
T Consensus 230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBC
T ss_pred cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhh
Confidence 2222 144444444443322222 3445555555555443 2222233344444444444443321
Q ss_pred C------CCc-----CcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCC--Ccccccc-------------
Q 039334 570 P------WLP-----KFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFS--NFTEIKL------------- 622 (782)
Q Consensus 570 ~------~l~-----~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~--~~~~~~~------------- 622 (782)
. .+| .+..+++|+.|++++|......+. +..+++|+.|++++|.+. .+....+
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 1 122 244456666666666554443332 566666666666665422 1111000
Q ss_pred CCCCCCCC-C---CCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCcccc----------------------
Q 039334 623 KDPSTQQL-P---FLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLP---------------------- 674 (782)
Q Consensus 623 ~~~~~~~l-~---~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~---------------------- 674 (782)
.......+ + ....+|+.|++++|.....++. +..+++|+.|++++|.+..++
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 00000000 0 0123677777776654333432 455556666666655544332
Q ss_pred -----c---cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCC--------C--CCCCCCCcCEEeccCC
Q 039334 675 -----S---ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTEL--------P--NLNDFPKLDLLDISNT 734 (782)
Q Consensus 675 -----~---~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l--------~--~~~~l~~L~~L~l~~~ 734 (782)
. .+++|+.|++++|. ++.++ .+.++++|+.|++++| .++.+ | .+..+++|+.|++++|
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 2 34556666666653 34443 2556666777777666 33332 1 1556677777777777
Q ss_pred CCCCCChhhhCCCCCCcccEEeCCCCCCCCCccccc
Q 039334 735 GIREIPDEILELSRPKIIREVDEETNQAEDVNRGRG 770 (782)
Q Consensus 735 ~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~ 770 (782)
+++.+|... +..++.|+.|++++|.++.++.+.+
T Consensus 547 ~l~~i~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 547 GFDEIPVEV--FKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp CCCCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCHHH--cccccCcceeECCCCCCCcCCHhHh
Confidence 777666542 3455666677888888887776654
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=271.41 Aligned_cols=369 Identities=21% Similarity=0.219 Sum_probs=189.2
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCc
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLS 465 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~ 465 (782)
....+++.|++++|.+... +...|.++++|++|++.+|.+..+++. .+++|++|++++|.+...++ .++++++|+
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 3455666666666655432 233455566666666666666555433 55666666666666555443 466666666
Q ss_pred EEEeecCCCCC--CCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCC----cEEEccCCCCCCCCCCccCCCcccEE
Q 039334 466 VLEISGASSLK--SNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKL----RFLILRQCSCLEYMPSLKELHELEII 537 (782)
Q Consensus 466 ~L~L~~~~~~~--~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L----~~L~l~~~~~~~~~~~~~~l~~L~~L 537 (782)
+|++++|. +. .+|..+ +++++|++|++++|.++.++. +..+++| ..|++++|.+....+......+|+.|
T Consensus 128 ~L~L~~n~-l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 128 ELNVAHNL-IQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp EEECCSSC-CCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred EEecCCCc-cceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 66666664 33 245543 666666666666666655432 4444444 45555555433222221111234444
Q ss_pred EccCCCC---------------------------------------------------------CCcccccccCCCCCcc
Q 039334 538 DLSGATS---------------------------------------------------------LSSFQQLDFSSHTNLQ 560 (782)
Q Consensus 538 ~l~~~~~---------------------------------------------------------~~~~~~~~l~~l~~L~ 560 (782)
+++++.. +....+..+..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 4333210 0000111223344455
Q ss_pred EEEccCCCCCCCcC-c--------------------CCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcc-
Q 039334 561 MVDLSYTQIPWLPK-F--------------------TDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFT- 618 (782)
Q Consensus 561 ~L~l~~~~~~~l~~-~--------------------~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~- 618 (782)
.|++++|.+..+|. + ..+++|+.|.+.+|......+. ..+++|+.|++++|.++...
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccc
Confidence 55555444444432 2 2344444444444433322222 45566667777666655432
Q ss_pred -ccccCCCC--------CCCC---C---CCCCCccEEEecCCCCCCCCC--cCCCCCCCCEEEeecCCCccccc----cc
Q 039334 619 -EIKLKDPS--------TQQL---P---FLPCSLSELYLRKCSALEHLP--LTTALKNLELLDLSNTNLKKLPS----EL 677 (782)
Q Consensus 619 -~~~~~~~~--------~~~l---~---~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~L~~~~l~~l~~----~l 677 (782)
+..+.... ...+ + ...++|++|++++|......+ .+..+++|+.|++++|.+...+. .+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 11111000 0000 0 011356666666654333333 25566677777777776664332 46
Q ss_pred cccceeeccccccC-CCCC-CCCCCCcccEEecccCCCCCCC-CC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCccc
Q 039334 678 CNLRKLLLNNCLSL-TKLP-EMKGLEKLEELRLSGCINLTEL-PN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIR 753 (782)
Q Consensus 678 ~~L~~L~L~~~~~l-~~l~-~~~~l~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 753 (782)
++|++|++++|... ..+| .+..+++|+.|++++| .++.+ |. +..+++|+.|++++|+++.+|.. .+..++.|+
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~ 521 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG--IFDRLTSLQ 521 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCC
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHH--HhhcccCCc
Confidence 67777777776433 2344 4666777777777776 44444 44 66777777777777777665543 224455556
Q ss_pred EEeCCCCCCCCC
Q 039334 754 EVDEETNQAEDV 765 (782)
Q Consensus 754 ~l~~~~n~~~~~ 765 (782)
.+++++|+++..
T Consensus 522 ~L~l~~N~~~~~ 533 (570)
T 2z63_A 522 KIWLHTNPWDCS 533 (570)
T ss_dssp EEECCSSCBCCC
T ss_pred EEEecCCcccCC
Confidence 777777777653
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9.2e-27 Score=264.90 Aligned_cols=359 Identities=18% Similarity=0.201 Sum_probs=232.7
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCcc-ccCCCCCcEEE
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDITG-IKELKTLSVLE 468 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~ 468 (782)
.+++.|++++|.+....+. .|..+++|++|++++|.+..+++. .+++|++|++++|.+...++. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 6889999999988755443 467799999999999999887754 788999999999998888765 89999999999
Q ss_pred eecCCCCCC--CchHHhcCCCCccEEEccCCC-CCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCC
Q 039334 469 ISGASSLKS--NPDELFDGMAQLQSLNLSRCP-MKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGA 542 (782)
Q Consensus 469 L~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~-l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~ 542 (782)
+++|. +.. .|.. ++.+++|++|++++|. +..+|. +..+++|++|++++|.+....|. +..+++|+.|+++.+
T Consensus 105 Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCc-ccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 99985 553 3444 4889999999999997 677774 88999999999999987765554 788999999999887
Q ss_pred CCCCcccccccCCCCCccEEEccCCCCCCCc-----CcCCCCcccEEEecCcCC--------------------------
Q 039334 543 TSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP-----KFTDLKHLSRILLRGCRK-------------------------- 591 (782)
Q Consensus 543 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-----~~~~l~~L~~L~l~~~~~-------------------------- 591 (782)
.. .......+..+++|+.|++++|.+..++ ....+++|+.|.+.++..
T Consensus 183 ~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred cc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 63 3333333456889999999999877642 122344455555444321
Q ss_pred --CCC-------CCCCCCCCCCCEEEc-----------------------------ccCCCCCccccccCCCCCCCCCCC
Q 039334 592 --LHI-------LPSFQKLHSLKILDL-----------------------------SEVGFSNFTEIKLKDPSTQQLPFL 633 (782)
Q Consensus 592 --~~~-------~~~l~~l~~L~~L~l-----------------------------~~~~l~~~~~~~~~~~~~~~l~~~ 633 (782)
... ...+..+++|+.|.+ ++|.+..++...+. .
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~---------~ 332 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ---------H 332 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH---------H
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh---------c
Confidence 100 001122233333333 33222222111100 0
Q ss_pred CCCccEEEecCCCCCCCCC----cCCCCCCCCEEEeecCCCcccc------ccccccceeeccccccCCCCC-CCCCCCc
Q 039334 634 PCSLSELYLRKCSALEHLP----LTTALKNLELLDLSNTNLKKLP------SELCNLRKLLLNNCLSLTKLP-EMKGLEK 702 (782)
Q Consensus 634 ~~~L~~L~l~~~~~l~~l~----~~~~l~~L~~L~L~~~~l~~l~------~~l~~L~~L~L~~~~~l~~l~-~~~~l~~ 702 (782)
.++|+.|++++|......| .++.+++|+.|++++|.++.++ ..+++|++|++++| .++.+| .+..+++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEK 411 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhccccc
Confidence 1256666666654333221 1345556666666666665443 14556666666665 344454 3445555
Q ss_pred ccEEecccCCCCCCCCC-------------------CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCC
Q 039334 703 LEELRLSGCINLTELPN-------------------LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAE 763 (782)
Q Consensus 703 L~~L~l~~c~~l~~l~~-------------------~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~ 763 (782)
|++|++++| .++.+|. ...+++|+.|++++|+++.+|.. ..++.|+.|++++|+++
T Consensus 412 L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~----~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 412 MRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA----SLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG----GGCTTCCEEECCSSCCC
T ss_pred ccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc----ccCccCCEEecCCCccC
Confidence 555555555 3333332 13678888888888888877763 23566678888888888
Q ss_pred CCccccc
Q 039334 764 DVNRGRG 770 (782)
Q Consensus 764 ~~~~~~~ 770 (782)
.++.+..
T Consensus 487 ~~~~~~~ 493 (549)
T 2z81_A 487 SVPDGIF 493 (549)
T ss_dssp CCCTTGG
T ss_pred CcCHHHH
Confidence 8776543
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.5e-26 Score=250.88 Aligned_cols=332 Identities=17% Similarity=0.152 Sum_probs=219.2
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEee
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEIS 470 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~ 470 (782)
...+++.|++++|.+.+. + .+..+++|++|++++|.+..++...+++|++|++++|.+...+ ++.+++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 345677777777776643 3 2556777777777777777765447777777777777766542 7777777777777
Q ss_pred cCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccc
Q 039334 471 GASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQ 550 (782)
Q Consensus 471 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 550 (782)
+|. +..+| ++.+++|++|++++|.++.++ ++.+++|+.|++++|...+.+ .+..+++|+.|++++|. +....
T Consensus 115 ~N~-l~~l~---~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~l~- 186 (457)
T 3bz5_A 115 TNK-LTKLD---VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK-ITELD- 186 (457)
T ss_dssp SSC-CSCCC---CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC-CCCCC-
T ss_pred CCc-CCeec---CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc-cceec-
Confidence 774 55555 367777777777777777664 666777777777777555544 46677777777777765 33322
Q ss_pred cccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCC
Q 039334 551 LDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQL 630 (782)
Q Consensus 551 ~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l 630 (782)
+..+++|+.|++++|.+..++ +..+++|+.|++++|.... +| +..+++|+.|++++|.+++.+...+
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~~~l-------- 253 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDVSTL-------- 253 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCCTTC--------
T ss_pred --cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCHHHC--------
Confidence 566777777777777777663 6667777777777765544 34 6667777777777777665432111
Q ss_pred CCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCc-cccc-cccccceeeccccccCCCCC---------CCCC
Q 039334 631 PFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLK-KLPS-ELCNLRKLLLNNCLSLTKLP---------EMKG 699 (782)
Q Consensus 631 ~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~-~l~~-~l~~L~~L~L~~~~~l~~l~---------~~~~ 699 (782)
++|+.|+++++ +|+.|++++|.+. .+|. .+++|+.|++++|..++.+| .+.+
T Consensus 254 ----~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 254 ----SKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp ----TTCCEEECTTC-------------CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred ----CCCCEEeccCC-------------CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 14555554432 3444555555422 3333 55777777777776544433 2567
Q ss_pred CCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCCCCChhhhCC----------CCCCcccEEeCCCCCCCC-Cccc
Q 039334 700 LEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIREIPDEILEL----------SRPKIIREVDEETNQAED-VNRG 768 (782)
Q Consensus 700 l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~~lp~~~~~l----------~~L~~L~~l~~~~n~~~~-~~~~ 768 (782)
+++|+.|++++| .++.++ +..+++|+.|++++|+++.+|. +..+ +.+..|..+++++|+++. +|.+
T Consensus 317 ~~~L~~L~L~~N-~l~~l~-l~~l~~L~~L~l~~N~l~~l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 317 NPKLVYLYLNNT-ELTELD-VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CTTCCEEECTTC-CCSCCC-CTTCTTCSEEECCSSCCCBCTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred cccCCEEECCCC-cccccc-cccCCcCcEEECCCCCCCCccc-cccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 789999999988 677665 8889999999999999886542 1111 233556778999999984 4444
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.6e-26 Score=252.73 Aligned_cols=308 Identities=19% Similarity=0.232 Sum_probs=248.1
Q ss_pred hcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEE
Q 039334 414 FNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSL 492 (782)
Q Consensus 414 ~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L 492 (782)
+..+++|++|++++|.+.+++.. .+++|++|++++|.+...+ ++.+++|++|++++|. +..++ ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC---CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee---cCCCCcCCEE
Confidence 34578999999999999887644 8899999999999887753 8899999999999985 77675 4889999999
Q ss_pred EccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC
Q 039334 493 NLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 493 ~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 572 (782)
++++|.++.+| ++.+++|++|++++|.+.. + .+..+++|+.|++++|...... .+..+++|+.|++++|.+..+
T Consensus 112 ~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 112 NCDTNKLTKLD-VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ECCSSCCSCCC-CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCeec-CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence 99999998887 8889999999999997655 4 3788999999999998655443 577889999999999999988
Q ss_pred cCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC
Q 039334 573 PKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP 652 (782)
Q Consensus 573 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~ 652 (782)
| +..+++|+.|++++|..... .+..+++|+.|++++|.+++++ +.. .++|+.|++++|. +..+|
T Consensus 186 ~-l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip---~~~---------l~~L~~L~l~~N~-l~~~~ 249 (457)
T 3bz5_A 186 D-VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID---VTP---------LTQLTYFDCSVNP-LTELD 249 (457)
T ss_dssp C-CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC---CTT---------CTTCSEEECCSSC-CSCCC
T ss_pred c-cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC---ccc---------cCCCCEEEeeCCc-CCCcC
Confidence 7 88899999999998865543 4788899999999999988754 111 1388999999884 44444
Q ss_pred cCCCCCCCCEEEeecCCCccccccccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCC---------CCCC
Q 039334 653 LTTALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPN---------LNDF 723 (782)
Q Consensus 653 ~~~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~---------~~~l 723 (782)
...+++|+.|+++.| +|+.|++++|.....+| ...+++|+.|++++|..++.+|. +..+
T Consensus 250 -~~~l~~L~~L~l~~n----------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 250 -VSTLSKLTTLHCIQT----------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN 317 (457)
T ss_dssp -CTTCTTCCEEECTTC----------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred -HHHCCCCCEEeccCC----------CCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence 456788888888765 56778888887666666 56789999999999976554431 6678
Q ss_pred CCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 724 PKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 724 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
++|+.|++++|+++.+| +..++.|+.|++++|++++++
T Consensus 318 ~~L~~L~L~~N~l~~l~-----l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 318 PKLVYLYLNNTELTELD-----VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp TTCCEEECTTCCCSCCC-----CTTCTTCSEEECCSSCCCBCT
T ss_pred ccCCEEECCCCcccccc-----cccCCcCcEEECCCCCCCCcc
Confidence 99999999999998874 556677778999999999864
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.3e-26 Score=257.11 Aligned_cols=360 Identities=19% Similarity=0.238 Sum_probs=260.2
Q ss_pred EEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC--CccccCCCCCcEEEeec
Q 039334 397 TLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED--ITGIKELKTLSVLEISG 471 (782)
Q Consensus 397 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L~~ 471 (782)
.+..+++.+.. +|. -.+++++|++++|.+..+++. .+++|++|++++|.+... +..|.++++|++|++++
T Consensus 14 ~~~c~~~~l~~-lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLHQ-VPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCSS-CCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCccc-CCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45555554432 232 136889999999988877543 788999999998887543 34688899999999998
Q ss_pred CCCCCCCchHHhcCCCCccEEEccCCCCCC--CCC--CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEccCCCCC
Q 039334 472 ASSLKSNPDELFDGMAQLQSLNLSRCPMKS--LPS--LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLSGATSL 545 (782)
Q Consensus 472 ~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~--lp~--l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~ 545 (782)
|. +..+++..++.+++|++|++++|.++. .+. +..+++|++|++++|.+....|. +..+++|+.|++++|. +
T Consensus 89 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l 166 (455)
T 3v47_A 89 NQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-V 166 (455)
T ss_dssp CT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-B
T ss_pred Cc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-c
Confidence 85 555543334889999999999998875 333 77888999999999887666565 6888999999998887 3
Q ss_pred CcccccccCCC--CCccEEEccCCCCCCCcC----------cCCCCcccEEEecCcCCCCCCCC----CCCCCCCCEEEc
Q 039334 546 SSFQQLDFSSH--TNLQMVDLSYTQIPWLPK----------FTDLKHLSRILLRGCRKLHILPS----FQKLHSLKILDL 609 (782)
Q Consensus 546 ~~~~~~~l~~l--~~L~~L~l~~~~~~~l~~----------~~~l~~L~~L~l~~~~~~~~~~~----l~~l~~L~~L~l 609 (782)
....+..+..+ .+|+.+++++|.+..++. +..+++|+.|++++|......+. ....++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 44444444443 678888888888776653 22457888999988865543321 223477888888
Q ss_pred ccCCCCCcccc--ccCCCCCCCCCC-CCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc----cccccc
Q 039334 610 SEVGFSNFTEI--KLKDPSTQQLPF-LPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS----ELCNLR 681 (782)
Q Consensus 610 ~~~~l~~~~~~--~~~~~~~~~l~~-~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~----~l~~L~ 681 (782)
+++........ .+.......+.. ...+|+.|++++|......|. +..+++|+.|++++|.++.++. .+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 88755432111 111111111111 124899999999876655555 7889999999999999998754 678999
Q ss_pred eeeccccccCCCC-C-CCCCCCcccEEecccCCCCCCC-CC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeC
Q 039334 682 KLLLNNCLSLTKL-P-EMKGLEKLEELRLSGCINLTEL-PN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDE 757 (782)
Q Consensus 682 ~L~L~~~~~l~~l-~-~~~~l~~L~~L~l~~c~~l~~l-~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~ 757 (782)
+|++++|. ++.+ + .+.++++|++|++++| .++.+ |. +..+++|+.|++++|+++.+|... +..++.|+.|++
T Consensus 327 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l 402 (455)
T 3v47_A 327 KLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGI--FDRLTSLQKIWL 402 (455)
T ss_dssp EEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEEC
T ss_pred EEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhH--hccCCcccEEEc
Confidence 99999995 4554 3 4788999999999999 56665 55 889999999999999999888653 356777789999
Q ss_pred CCCCCCCCcc
Q 039334 758 ETNQAEDVNR 767 (782)
Q Consensus 758 ~~n~~~~~~~ 767 (782)
++|+++....
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 9999987554
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-26 Score=251.07 Aligned_cols=297 Identities=20% Similarity=0.234 Sum_probs=172.9
Q ss_pred CCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEE
Q 039334 417 MPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSL 492 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L 492 (782)
+++++.|++.++.+..++.. .+++|++|++++|.+...++ .+..+++|++|++++|. +..+++..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEE
Confidence 56778888888777777664 67778888888777766553 67777888888887774 666665555777788888
Q ss_pred EccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 493 NLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 493 ~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|+++++.. ... .+..+++|+.+++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Ccc---ccccccccceeecccccc
Confidence 888887777776 46777788888777765544343 56666777777666652 221 234455666666666554
Q ss_pred CCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCC
Q 039334 570 PWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALE 649 (782)
Q Consensus 570 ~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 649 (782)
..++ ..++|+.|+++ +|.+..++... +.+|+.|++++|. +.
T Consensus 199 ~~~~---~~~~L~~L~l~-----------------------~n~l~~~~~~~------------~~~L~~L~l~~n~-l~ 239 (390)
T 3o6n_A 199 STLA---IPIAVEELDAS-----------------------HNSINVVRGPV------------NVELTILKLQHNN-LT 239 (390)
T ss_dssp SEEE---CCSSCSEEECC-----------------------SSCCCEEECCC------------CSSCCEEECCSSC-CC
T ss_pred cccC---CCCcceEEECC-----------------------CCeeeeccccc------------cccccEEECCCCC-Cc
Confidence 4322 22344444444 44443332111 1145555555542 23
Q ss_pred CCCcCCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCC
Q 039334 650 HLPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDF 723 (782)
Q Consensus 650 ~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l 723 (782)
..+.+..+++|+.|++++|.++.++. .+++|++|++++| .++.++ ....+++|+.|++++| .++.+|. +..+
T Consensus 240 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l 317 (390)
T 3o6n_A 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 317 (390)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH
T ss_pred ccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcccccc
Confidence 33444455555555555555554422 3455555666555 333333 2344556666666665 4445554 4455
Q ss_pred CCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCC
Q 039334 724 PKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAED 764 (782)
Q Consensus 724 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~ 764 (782)
++|+.|++++|+++.+| +..++.|+.|++++|+++.
T Consensus 318 ~~L~~L~L~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEEH
T ss_pred CcCCEEECCCCccceeC-----chhhccCCEEEcCCCCccc
Confidence 56666666666655553 2334445555666665543
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=5e-25 Score=242.35 Aligned_cols=334 Identities=22% Similarity=0.289 Sum_probs=218.9
Q ss_pred CceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCC
Q 039334 394 EVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGAS 473 (782)
Q Consensus 394 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 473 (782)
+++.|.++++.+.+. |. -.++|+.|++++|.+..++. .+++|++|++++|.+...+. + .++|++|++++|.
T Consensus 72 ~l~~L~l~~~~l~~l-p~----~~~~L~~L~l~~n~l~~lp~-~~~~L~~L~l~~n~l~~l~~-~--~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 72 QAHELELNNLGLSSL-PE----LPPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQ 142 (454)
T ss_dssp TCSEEECTTSCCSCC-CS----CCTTCSEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSC
T ss_pred CCCEEEecCCccccC-CC----CcCCCCEEEccCCcCCcccc-ccCCCcEEECCCCccCcccC-C--CCCCCEEECcCCC
Confidence 457788888776542 22 13678888888888877654 45788888888887665332 1 1688888888884
Q ss_pred CCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCccccccc
Q 039334 474 SLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDF 553 (782)
Q Consensus 474 ~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 553 (782)
+..+|. ++.+++|++|++++|.++.+|.. ..+|++|++++|.+.. +|.+..+++|+.|++++|.. ...+.
T Consensus 143 -l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l-~~l~~--- 212 (454)
T 1jl5_A 143 -LEKLPE--LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSL-KKLPD--- 212 (454)
T ss_dssp -CSSCCC--CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC-SSCCC---
T ss_pred -CCCCcc--cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcC-CcCCC---
Confidence 666773 48888888888888888888762 2488888888886544 67788888888888888763 33221
Q ss_pred CCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCC
Q 039334 554 SSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFL 633 (782)
Q Consensus 554 ~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~ 633 (782)
..++|+.|++++|.+..+|.++.+++|+.|++++|.... ++. .+++|+.|++++|.+++++. .
T Consensus 213 -~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~l~~-------------~ 275 (454)
T 1jl5_A 213 -LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTDLPE-------------L 275 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSCCCC-------------C
T ss_pred -CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccccCc-------------c
Confidence 125788888888888888888888888888888875443 333 23678888888888765432 1
Q ss_pred CCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccccccccceeeccccccCCCCCCCCCCCcccEEecccCCC
Q 039334 634 PCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCIN 713 (782)
Q Consensus 634 ~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~ 713 (782)
+.+|+.|++++|. +..++.. .++|+.|++++|.++.++...++|++|++++| .++.+|.. +++|+.|++++| .
T Consensus 276 ~~~L~~L~ls~N~-l~~l~~~--~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N-~ 348 (454)
T 1jl5_A 276 PQSLTFLDVSENI-FSGLSEL--PPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFN-H 348 (454)
T ss_dssp CTTCCEEECCSSC-CSEESCC--CTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-C
T ss_pred cCcCCEEECcCCc-cCcccCc--CCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc--CCcCCEEECCCC-c
Confidence 2478888888874 3333322 26788888888888877765568888888887 45556643 578888888887 6
Q ss_pred CCCCCCCCCCCCcCEEeccCCCCCC---CChhhhCC----------CCCCcccEEeCCCCCCCC---CcccccCc
Q 039334 714 LTELPNLNDFPKLDLLDISNTGIRE---IPDEILEL----------SRPKIIREVDEETNQAED---VNRGRGGM 772 (782)
Q Consensus 714 l~~l~~~~~l~~L~~L~l~~~~l~~---lp~~~~~l----------~~L~~L~~l~~~~n~~~~---~~~~~~~~ 772 (782)
++.+|. .+++|+.|++++|+++. +|..+.++ ..++.|+.|++++|+++. +|.+...+
T Consensus 349 l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 349 LAEVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred cccccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 777776 57888888888888775 44444333 111667788999998884 45444443
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=262.00 Aligned_cols=370 Identities=21% Similarity=0.231 Sum_probs=247.8
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCC-ccccCCCCCcEEE
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDI-TGIKELKTLSVLE 468 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~ 468 (782)
.+++.|++++|.+....+ ..|..+++|++|++++|.+..+++. .+++|++|++++|.+...+ ..|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 468999999998875443 3567799999999999999888654 7899999999999987766 5799999999999
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCCCC--CCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcc----cEEEcc
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPMKS--LPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHEL----EIIDLS 540 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~--lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L----~~L~l~ 540 (782)
+++|. +..++...++.+++|++|++++|.++. +|. ++++++|++|++++|.+....+. +..+++| ..++++
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 99985 777776445899999999999999886 677 99999999999999986654443 5666666 789999
Q ss_pred CCCCCCcccccccCCCCCccEEEccCCCCC--------------------------------------------------
Q 039334 541 GATSLSSFQQLDFSSHTNLQMVDLSYTQIP-------------------------------------------------- 570 (782)
Q Consensus 541 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------------------------------------------------- 570 (782)
++. +....+..+... +|+.|++++|...
T Consensus 186 ~n~-l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 186 LNP-MNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TCC-CCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCC-ceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 887 444445555444 6777777665211
Q ss_pred ---------CC-cCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCC---------CCCCC
Q 039334 571 ---------WL-PKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPS---------TQQLP 631 (782)
Q Consensus 571 ---------~l-~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~---------~~~l~ 631 (782)
.. ..+..+++|+.|++++|......+.+..+ +|+.|++++|.+..++...+.... ....+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 01 13455788889999888665544456666 888888888877655432211000 00000
Q ss_pred -CCCCCccEEEecCCCCCCCC--Cc-CCCCCCCCEEEeecCCCccccc----------------------------cccc
Q 039334 632 -FLPCSLSELYLRKCSALEHL--PL-TTALKNLELLDLSNTNLKKLPS----------------------------ELCN 679 (782)
Q Consensus 632 -~~~~~L~~L~l~~~~~l~~l--~~-~~~l~~L~~L~L~~~~l~~l~~----------------------------~l~~ 679 (782)
...++|+.|++++|...... +. +..+++|+.|++++|.+..++. .+++
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 11236777777666322111 11 3334455555555544443332 3445
Q ss_pred cceeeccccccCCCCC-CCCCCCcccEEecccCCCC-CCCCC-CCCCCCcCEEeccCCCCCCC-ChhhhCCCCCCcccEE
Q 039334 680 LRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINL-TELPN-LNDFPKLDLLDISNTGIREI-PDEILELSRPKIIREV 755 (782)
Q Consensus 680 L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l-~~l~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~~l 755 (782)
|++|++++|......+ .+.++++|++|++++|... ..+|. +..+++|+.|++++|+++.+ |..+ .+++.|+.|
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L 499 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF---NSLSSLQVL 499 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEE
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh---hcccCCCEE
Confidence 5555555553333333 3556667777777766322 23555 77778888888888877754 4444 345566688
Q ss_pred eCCCCCCCCCccccc
Q 039334 756 DEETNQAEDVNRGRG 770 (782)
Q Consensus 756 ~~~~n~~~~~~~~~~ 770 (782)
++++|.+++++.+..
T Consensus 500 ~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 500 NMASNQLKSVPDGIF 514 (570)
T ss_dssp ECCSSCCSCCCTTTT
T ss_pred eCCCCcCCCCCHHHh
Confidence 888888888876544
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=253.35 Aligned_cols=357 Identities=17% Similarity=0.171 Sum_probs=247.4
Q ss_pred eEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC-CccccCCCCCcEEEeec
Q 039334 396 LTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLSVLEISG 471 (782)
Q Consensus 396 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~ 471 (782)
+++++++|.+. .+|..++ +++++|++++|.+..+++. .+++|++|++++|.+... +..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57889999887 4565543 7999999999999988764 889999999999998877 45799999999999999
Q ss_pred CCCCCCCchHHhcCCCCccEEEccCCCCCC--CCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcc--cEEEccCCCCC-
Q 039334 472 ASSLKSNPDELFDGMAQLQSLNLSRCPMKS--LPS-LPKLTKLRFLILRQCSCLEYMPSLKELHEL--EIIDLSGATSL- 545 (782)
Q Consensus 472 ~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~--lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~- 545 (782)
|. +..+|.. .+++|++|++++|.++. +|. ++.+++|++|++++|.+.. ..+..+++| +.|++++|...
T Consensus 79 N~-l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NK-LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SC-CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Cc-eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccc
Confidence 85 7788874 79999999999999986 566 9999999999999997654 345667777 99999988631
Q ss_pred CcccccccCC--------------------------CCCccEEEccCCC-------CC-CCcCcCCCCcccEEEecCcCC
Q 039334 546 SSFQQLDFSS--------------------------HTNLQMVDLSYTQ-------IP-WLPKFTDLKHLSRILLRGCRK 591 (782)
Q Consensus 546 ~~~~~~~l~~--------------------------l~~L~~L~l~~~~-------~~-~l~~~~~l~~L~~L~l~~~~~ 591 (782)
....+..+.. +++|+.+++++|. +. .++.+..+++|+.|++.++..
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 2222333333 3333444443332 00 112233344444444444322
Q ss_pred CCC----CCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCC------------CCC----------CCccEEEecCC
Q 039334 592 LHI----LPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLP------------FLP----------CSLSELYLRKC 645 (782)
Q Consensus 592 ~~~----~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~------------~~~----------~~L~~L~l~~~ 645 (782)
... +......++|+.|++++|.+.+..+..+.......++ .++ .+|+.|++++|
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 110 0000013467788887776653222221000000010 111 35888888887
Q ss_pred CCCCCCCcCCCCCCCCEEEeecCCCcc-ccc---cccccceeeccccccCCCC---C-CCCCCCcccEEecccCCCCCC-
Q 039334 646 SALEHLPLTTALKNLELLDLSNTNLKK-LPS---ELCNLRKLLLNNCLSLTKL---P-EMKGLEKLEELRLSGCINLTE- 716 (782)
Q Consensus 646 ~~l~~l~~~~~l~~L~~L~L~~~~l~~-l~~---~l~~L~~L~L~~~~~l~~l---~-~~~~l~~L~~L~l~~c~~l~~- 716 (782)
. +...+....+++|+.|++++|.++. +|. .+++|++|++++|. ++.+ | .+..+++|+.|++++|. ++.
T Consensus 313 ~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 313 R-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYD 389 (520)
T ss_dssp C-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCC
T ss_pred c-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcc
Confidence 4 3333334688999999999999986 444 68899999999994 5543 3 37889999999999994 554
Q ss_pred CCC--CCCCCCcCEEeccCCCCC-CCChhhhCCCCCCcccEEeCCCCCCCCCccccc
Q 039334 717 LPN--LNDFPKLDLLDISNTGIR-EIPDEILELSRPKIIREVDEETNQAEDVNRGRG 770 (782)
Q Consensus 717 l~~--~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~ 770 (782)
+|. +..+++|+.|++++|+++ .+|..+ + +.|+.|++++|.++.++.+.+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~--~~L~~L~Ls~N~l~~ip~~~~ 441 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL---P--PRIKVLDLHSNKIKSIPKQVV 441 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSC---C--TTCCEEECCSSCCCCCCGGGG
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhh---c--ccCCEEECCCCcccccchhhh
Confidence 775 788999999999999986 455443 2 678899999999999987665
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.5e-25 Score=265.00 Aligned_cols=339 Identities=18% Similarity=0.190 Sum_probs=163.0
Q ss_pred CCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC--CccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEE
Q 039334 418 PKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED--ITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSL 492 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L 492 (782)
+++++|++++|.+..+.+. .+++|++|++++|..... +..|.++++|++|+|++|. +..+++..|+++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEe
Confidence 4555555555555544332 455555555555533222 2345555555555555553 333322223555555555
Q ss_pred EccCCCCCC-CCC---CCCCCCCcEEEccCCCCCCCCC--CccCCCcccEEEccCCCCCCcccccccCCC--CCccEEEc
Q 039334 493 NLSRCPMKS-LPS---LPKLTKLRFLILRQCSCLEYMP--SLKELHELEIIDLSGATSLSSFQQLDFSSH--TNLQMVDL 564 (782)
Q Consensus 493 ~l~~~~l~~-lp~---l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l 564 (782)
++++|.++. +|. +..+++|++|++++|.+....+ .++++++|+.|++++|. +....+..+..+ ++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEEC
Confidence 555555543 221 4555555555555554433322 24555555555555544 222222333333 45555555
Q ss_pred cCCCCCCC-c-CcCCCCc------ccEEEecCcCCCCCCCC-C---CCCCCCCEEEcccCCCCCc-cccccCCCCCCCCC
Q 039334 565 SYTQIPWL-P-KFTDLKH------LSRILLRGCRKLHILPS-F---QKLHSLKILDLSEVGFSNF-TEIKLKDPSTQQLP 631 (782)
Q Consensus 565 ~~~~~~~l-~-~~~~l~~------L~~L~l~~~~~~~~~~~-l---~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~l~ 631 (782)
+.|.+... + .+..+++ |+.|++++|......+. + ....+++.+.+..+.+... ....+.......+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 55544331 1 2222222 55555555432211110 1 0112233333321111000 00000000000011
Q ss_pred CC-CCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC-CCCCCCccc
Q 039334 632 FL-PCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLE 704 (782)
Q Consensus 632 ~~-~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~ 704 (782)
.+ +.+|+.|++++|......+. +..+++|+.|+|++|.++.++. .+++|++|++++|......+ .+.++++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 11 24677777777654333333 5667777777777777776543 56677777777774322223 466777777
Q ss_pred EEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 705 ELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 705 ~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
.|++++| .++.++. +..+++|+.|++++|.++.++. ++.|+.+++++|.++.++
T Consensus 342 ~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 342 YIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEECCSC-CCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------CCSCSEEEEESCCCCCCC
T ss_pred EEECCCC-CCCccChhhhcCCCCCCEEECCCCCCCcccC-------CCCcchhccCCCCccccc
Confidence 7777777 5555554 6677777777777777765543 333344445555544443
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.1e-25 Score=252.57 Aligned_cols=143 Identities=21% Similarity=0.151 Sum_probs=117.2
Q ss_pred CCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCC-ccccCCCCCcEE
Q 039334 392 LREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDI-TGIKELKTLSVL 467 (782)
Q Consensus 392 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L 467 (782)
+...+.++++++.+.. +|..++ +++++|++++|.+..+++. .+++|++|++++|.+.... ..|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3444889999998875 565543 7999999999999998864 8899999999999988764 569999999999
Q ss_pred EeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCC--C-CCCCCCCcEEEccCCCCCCCCCCccCCCcc--cEEEccCC
Q 039334 468 EISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLP--S-LPKLTKLRFLILRQCSCLEYMPSLKELHEL--EIIDLSGA 542 (782)
Q Consensus 468 ~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp--~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~ 542 (782)
++++|. +..+|.. .+++|++|++++|.++.+| . ++++++|++|++++|.+.. ..+..+++| +.|+++++
T Consensus 106 ~Ls~N~-l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNR-LQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSC-CCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred ECCCCc-CCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence 999995 7888874 7999999999999999865 5 8999999999999997654 234455555 99999987
Q ss_pred CC
Q 039334 543 TS 544 (782)
Q Consensus 543 ~~ 544 (782)
..
T Consensus 180 ~l 181 (562)
T 3a79_B 180 SY 181 (562)
T ss_dssp SC
T ss_pred cc
Confidence 63
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5.7e-26 Score=260.02 Aligned_cols=296 Identities=20% Similarity=0.244 Sum_probs=172.4
Q ss_pred CCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEE
Q 039334 417 MPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSL 492 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L 492 (782)
+.+++.+++.++.+..+|+. .+++|++|++++|.+...++ .|..+++|++|++++|. +..+|+..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEE
Confidence 56788888888888777765 67888888888887776654 67888888888888874 666776666788888888
Q ss_pred EccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 493 NLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 493 ~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
++++|.++.+|. ++.+++|++|++++|.+....|. +..+++|+.|++++|. +... .+..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCc---ChhhhhhhhhhhcccCcc
Confidence 888888888776 57788888888888876555443 5777777777777765 2222 234556666677666655
Q ss_pred CCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCC
Q 039334 570 PWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALE 649 (782)
Q Consensus 570 ~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 649 (782)
..++ ..++|+.|++++|........+ .++|+.|++++|.+++
T Consensus 205 ~~l~---~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--------------------------------- 246 (597)
T 3oja_B 205 STLA---IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--------------------------------- 246 (597)
T ss_dssp SEEE---CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC---------------------------------
T ss_pred cccc---CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC---------------------------------
Confidence 4332 2344555555554332221111 1345555555554443
Q ss_pred CCCcCCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-CCCC
Q 039334 650 HLPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-LNDF 723 (782)
Q Consensus 650 ~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~l 723 (782)
.+.+..+++|+.|+|++|.++.+++ .+++|+.|+|++| .++.+| ....+++|+.|++++| .+..+|. +..+
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l 323 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF 323 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccC
Confidence 2334444445555555544443322 3444555555444 233333 2333455555555554 3334443 4444
Q ss_pred CCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCC
Q 039334 724 PKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAE 763 (782)
Q Consensus 724 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~ 763 (782)
++|+.|++++|+++.+| +..++.|+.|++++|+++
T Consensus 324 ~~L~~L~L~~N~l~~~~-----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK-----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCSEEECCSSCCCCCC-----CCTTCCCSEEECCSSCEE
T ss_pred CCCCEEECCCCCCCCcC-----hhhcCCCCEEEeeCCCCC
Confidence 55555555555544443 223334444555555543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=4.2e-25 Score=246.35 Aligned_cols=304 Identities=20% Similarity=0.291 Sum_probs=216.1
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
+.++..++.+..+|..-.+++++|++++|.+...+ ..|.++++|++|+|++|. +..+++..|..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcC
Confidence 45666666666666655567888888888877664 468888888888888874 6655444458888888888888888
Q ss_pred CCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--C
Q 039334 500 KSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--K 574 (782)
Q Consensus 500 ~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~ 574 (782)
+.+|. +..+++|++|++++|.+....+. +..+++|+.|+++++. +....+..+..+++|+.|++++|.+..++ .
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 88876 67888888888888876655454 6788888888888876 45555567788888888888888888776 3
Q ss_pred cCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc
Q 039334 575 FTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL 653 (782)
Q Consensus 575 ~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~ 653 (782)
+..+++|+.|++++|......+ .+..+++|+.|++++|......+.... ...+|++|++++| .+..+|.
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~n-~l~~~~~ 241 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------YGLNLTSLSITHC-NLTAVPY 241 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT---------TTCCCSEEEEESS-CCCSCCH
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc---------cCccccEEECcCC-cccccCH
Confidence 7778888888888876554443 477788888888887654332111110 0127788888877 3445553
Q ss_pred --CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC--CCCCC
Q 039334 654 --TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN--LNDFP 724 (782)
Q Consensus 654 --~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~ 724 (782)
+..+++|+.|+|++|.++.++. .+++|+.|++++|......+ .+.++++|+.|++++| .++.++. +..++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVG 320 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCc
Confidence 6677788888888887776654 56777888887774333223 4667778888888777 5666665 67777
Q ss_pred CcCEEeccCCCCC
Q 039334 725 KLDLLDISNTGIR 737 (782)
Q Consensus 725 ~L~~L~l~~~~l~ 737 (782)
+|+.|++++|++.
T Consensus 321 ~L~~L~l~~N~l~ 333 (477)
T 2id5_A 321 NLETLILDSNPLA 333 (477)
T ss_dssp GCCEEECCSSCEE
T ss_pred ccCEEEccCCCcc
Confidence 8888888887765
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-24 Score=238.98 Aligned_cols=329 Identities=22% Similarity=0.238 Sum_probs=257.8
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCC-------------CceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCcc
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMP-------------KLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITG 457 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~-------------~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 457 (782)
...+++.|.+++|.+.+..|..+ ..+. +++.|++++|.+.++|. ..++|++|++++|.+...+.
T Consensus 32 ~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-~~~~L~~L~l~~n~l~~lp~- 108 (454)
T 1jl5_A 32 NVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPE- 108 (454)
T ss_dssp --CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCC-
T ss_pred cccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC-CcCCCCEEEccCCcCCcccc-
Confidence 44566677777766554444432 2233 35899999999888766 35899999999998887553
Q ss_pred ccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEE
Q 039334 458 IKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEII 537 (782)
Q Consensus 458 l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 537 (782)
.+++|++|++++|. +..+|. ..++|++|++++|.++.+|.++.+++|++|++++|.+.. +|.. ..+|+.|
T Consensus 109 --~~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L 178 (454)
T 1jl5_A 109 --LPQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFI 178 (454)
T ss_dssp --CCTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEE
T ss_pred --ccCCCcEEECCCCc-cCcccC----CCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCC--cccccEE
Confidence 24899999999985 666653 137999999999999999888899999999999997553 5543 3589999
Q ss_pred EccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCc
Q 039334 538 DLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNF 617 (782)
Q Consensus 538 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 617 (782)
++++|. +...+ .+..+++|+.|++++|.+..+|.. .++|+.|++++|... .++.+..+++|+.|++++|.++++
T Consensus 179 ~L~~n~-l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 179 AAGNNQ-LEELP--ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp ECCSSC-CSSCC--CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred ECcCCc-CCcCc--cccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCcc
Confidence 999987 44432 588999999999999999888754 368999999998655 666789999999999999988764
Q ss_pred cccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccccccccceeeccccccCCCCCCC
Q 039334 618 TEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLPEM 697 (782)
Q Consensus 618 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~~~ 697 (782)
+. .+.+|+.|++++|. +..+|.. +++|+.|++++|.++.+|...++|+.|++++| .++.++.+
T Consensus 253 ~~-------------~~~~L~~L~l~~N~-l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N-~l~~i~~~ 315 (454)
T 1jl5_A 253 PD-------------LPPSLEALNVRDNY-LTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLCDL 315 (454)
T ss_dssp CS-------------CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCSEECCC
T ss_pred cc-------------cccccCEEECCCCc-ccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEECcCC-cCCcccCC
Confidence 32 22489999999985 4456542 47999999999999988876789999999988 45555432
Q ss_pred CCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 698 KGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 698 ~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
.++|+.|++++| .++.+|.. +++|+.|++++|.++.+|. .++.|+.|++++|.++.++
T Consensus 316 --~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l~~lp~------~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 316 --PPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHLAEVPE------LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp --CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSCC
T ss_pred --cCcCCEEECCCC-cccccccc--CCcCCEEECCCCccccccc------hhhhccEEECCCCCCCcCC
Confidence 259999999998 67777763 6899999999999999987 3677889999999999843
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.1e-25 Score=245.00 Aligned_cols=332 Identities=19% Similarity=0.197 Sum_probs=256.7
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCC-CCcc---CCCCccEEEEecCCCCCC-CccccCCCCCcEE
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKS-LMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLSVL 467 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L 467 (782)
.+++.|++++|.+....+ ..+..+++|++|++++|.+.. +++. .+++|++|++++|.+... +..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 679999999999876544 446779999999999998863 3332 789999999999998776 4579999999999
Q ss_pred EeecCCCCCC-CchH-HhcCCCCccEEEccCCCCCCC-CC--CCCCCCCcEEEccCCCCCCCCCC-ccCC--CcccEEEc
Q 039334 468 EISGASSLKS-NPDE-LFDGMAQLQSLNLSRCPMKSL-PS--LPKLTKLRFLILRQCSCLEYMPS-LKEL--HELEIIDL 539 (782)
Q Consensus 468 ~L~~~~~~~~-lp~~-~~~~l~~L~~L~l~~~~l~~l-p~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l--~~L~~L~l 539 (782)
++++|. +.. .+.. .+..+++|++|++++|.++.+ |. +..+++|++|++++|.+....+. +..+ .+|+.+++
T Consensus 109 ~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999996 543 3332 358899999999999999887 54 78999999999999987665554 4444 68999999
Q ss_pred cCCCCCCccccc--------ccCCCCCccEEEccCCCCCCCc--C---cCCCCcccEEEecCcCCCCCCC----------
Q 039334 540 SGATSLSSFQQL--------DFSSHTNLQMVDLSYTQIPWLP--K---FTDLKHLSRILLRGCRKLHILP---------- 596 (782)
Q Consensus 540 ~~~~~~~~~~~~--------~l~~l~~L~~L~l~~~~~~~l~--~---~~~l~~L~~L~l~~~~~~~~~~---------- 596 (782)
+++.. ...... .+..+++|+.|++++|.+.... . ....++|+.|.+++|.......
T Consensus 188 ~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 188 SSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp TTCBC-TTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred ccCcc-cccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 98873 332222 2345689999999999876421 1 2234789999998875432211
Q ss_pred -CCC--CCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCcc
Q 039334 597 -SFQ--KLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKK 672 (782)
Q Consensus 597 -~l~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~ 672 (782)
.+. ..++|+.|++++|.+.+..+..+... ++|+.|++++|......+. +..+++|+.|++++|.++.
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHF---------TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTC---------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccccccccCceEEEecCccccccchhhcccC---------CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 111 23689999999999887654433322 3899999999865544453 7889999999999999998
Q ss_pred ccc----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCC
Q 039334 673 LPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 673 l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~ 737 (782)
++. .+++|++|++++|......| .+..+++|++|++++| .++.+|. +..+++|+.|++++|+++
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence 754 68999999999995433334 5889999999999998 6777876 789999999999999987
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-25 Score=238.74 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=231.4
Q ss_pred cCCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCc
Q 039334 390 KKLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLS 465 (782)
Q Consensus 390 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~ 465 (782)
....+++.+.++++.+.. ++..++..+++|++|++.+|.+..+++. .+++|++|++++|.+...++ .+.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 345788999999987653 5667788899999999999999888764 88999999999999988765 589999999
Q ss_pred EEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCC
Q 039334 466 VLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGAT 543 (782)
Q Consensus 466 ~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 543 (782)
+|++++|. +..+|..+|..+++|++|++++|.++.++. +..+++|++|++++|.+... .+..+++|+.++++++.
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSC
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccc
Confidence 99999995 889998877999999999999999998865 89999999999999975542 46788999999999886
Q ss_pred CCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccC
Q 039334 544 SLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLK 623 (782)
Q Consensus 544 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 623 (782)
. . .+...++|+.|++++|.+..++. ..+++|+.|++++|... ..+.+..+++|+.|++++|.+++..+..
T Consensus 198 l-~-----~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-- 267 (390)
T 3o6n_A 198 L-S-----TLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHP-- 267 (390)
T ss_dssp C-S-----EEECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGG--
T ss_pred c-c-----ccCCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCc-ccHHHcCCCCccEEECCCCcCCCcChhH--
Confidence 3 2 23455789999999999887653 22467777777776543 3355666667777777666554432221
Q ss_pred CCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc---cccccceeeccccccCCCCC-CCCC
Q 039334 624 DPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS---ELCNLRKLLLNNCLSLTKLP-EMKG 699 (782)
Q Consensus 624 ~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~---~l~~L~~L~L~~~~~l~~l~-~~~~ 699 (782)
+..+++|+.|++++|.++.+|. .+++|++|++++| .++.+| .+..
T Consensus 268 ------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 316 (390)
T 3o6n_A 268 ------------------------------FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ 316 (390)
T ss_dssp ------------------------------GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred ------------------------------ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccc
Confidence 3445667777777777766655 4677777777777 345555 4566
Q ss_pred CCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCC
Q 039334 700 LEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 700 l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~ 737 (782)
+++|+.|++++| .++.++ +..+++|+.|++++|+++
T Consensus 317 l~~L~~L~L~~N-~i~~~~-~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 317 FDRLENLYLDHN-SIVTLK-LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp HTTCSEEECCSS-CCCCCC-CCTTCCCSEEECCSSCEE
T ss_pred cCcCCEEECCCC-ccceeC-chhhccCCEEEcCCCCcc
Confidence 788888888887 466665 667788888888888876
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.7e-24 Score=246.43 Aligned_cols=350 Identities=17% Similarity=0.208 Sum_probs=253.8
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCccccCCCCCcEEEe
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDITGIKELKTLSVLEI 469 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 469 (782)
.+++.|++++|.+.... ...|..+++|++|++++|.+..+++. .+++|++|++++|.+...+.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 78999999999987654 45577899999999999999988654 789999999999998866655 8999999999
Q ss_pred ecCCCCCCCc--hHHhcCCCCccEEEccCCCCCCCCCCCCCCCC--cEEEccCCCC--CCCCCC-c--------------
Q 039334 470 SGASSLKSNP--DELFDGMAQLQSLNLSRCPMKSLPSLPKLTKL--RFLILRQCSC--LEYMPS-L-------------- 528 (782)
Q Consensus 470 ~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L--~~L~l~~~~~--~~~~~~-~-------------- 528 (782)
++|. +..++ .. ++.+++|++|++++|.++... +..+++| +.|++++|.+ ....|. +
T Consensus 129 s~N~-l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFND-FDVLPVCKE-FGNLTKLTFLGLSAAKFRQLD-LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSC-CSBCCCCGG-GGGCTTCCEEEEECSBCCTTT-TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCC-ccccCchHh-hcccCcccEEecCCCccccCc-hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9996 66654 45 599999999999999887633 4445555 9999999876 333332 2
Q ss_pred ------------cCCCcccEEEccCCCCC--------------Ccccc----------------cccCCCCCccEEEccC
Q 039334 529 ------------KELHELEIIDLSGATSL--------------SSFQQ----------------LDFSSHTNLQMVDLSY 566 (782)
Q Consensus 529 ------------~~l~~L~~L~l~~~~~~--------------~~~~~----------------~~l~~l~~L~~L~l~~ 566 (782)
..+++|+.++++++... ..... .......+|+.|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 24556666666665200 00000 0000123667777776
Q ss_pred CCCC-CCcC-c-----CCC--------------------------CcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCC
Q 039334 567 TQIP-WLPK-F-----TDL--------------------------KHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVG 613 (782)
Q Consensus 567 ~~~~-~l~~-~-----~~l--------------------------~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 613 (782)
|.+. .+|. + ..+ .+|+.|++++|.... .+....+++|+.|++++|.
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-ccCccCCCCceEEECCCCc
Confidence 6655 3442 1 222 235556665554321 1122678899999999999
Q ss_pred CCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC---c-CCCCCCCCEEEeecCCCcc-ccc----cccccceee
Q 039334 614 FSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP---L-TTALKNLELLDLSNTNLKK-LPS----ELCNLRKLL 684 (782)
Q Consensus 614 l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~---~-~~~l~~L~~L~L~~~~l~~-l~~----~l~~L~~L~ 684 (782)
+++..+..+.. .++|+.|++++|. +..++ . +..+++|+.|++++|.++. +|. .+++|+.|+
T Consensus 365 l~~~~~~~~~~---------l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 365 FTDSVFQGCST---------LKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCTTTTTTCCS---------CSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred cccchhhhhcc---------cCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 88644333221 1389999999984 55443 2 6789999999999999987 775 578999999
Q ss_pred ccccccCCCCCCCCCC-CcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCC
Q 039334 685 LNNCLSLTKLPEMKGL-EKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQA 762 (782)
Q Consensus 685 L~~~~~l~~l~~~~~l-~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~ 762 (782)
+++|.....++. .+ ++|+.|++++| .++.+|. +..+++|+.|++++|+++.+|.. .+..++.|+.+++++|++
T Consensus 435 l~~n~l~~~~~~--~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 435 LSSNMLTGSVFR--CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSVPDG--VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCSSCCCGGGGS--SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCCCTT--STTTCTTCCCEECCSCCB
T ss_pred CCCCCCCcchhh--hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCCCCHH--HHhcCCCCCEEEecCCCc
Confidence 999964444442 22 79999999999 7889988 66999999999999999999987 345566777899999998
Q ss_pred CC
Q 039334 763 ED 764 (782)
Q Consensus 763 ~~ 764 (782)
.-
T Consensus 510 ~c 511 (562)
T 3a79_B 510 DC 511 (562)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.3e-25 Score=250.82 Aligned_cols=298 Identities=17% Similarity=0.162 Sum_probs=236.4
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCcE
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLSV 466 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~ 466 (782)
...+++.+.++++.+. .+|..+|..+++|++|++.+|.+..+++. .+++|++|+|++|.+...++ .|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 4567889999988765 35677788899999999999999988764 88999999999999988775 5799999999
Q ss_pred EEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCC
Q 039334 467 LEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATS 544 (782)
Q Consensus 467 L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 544 (782)
|++++|. +..+|..+|+.+++|++|++++|.++.++. +..+++|++|++++|.+.. + .+..+++|+.|+++++..
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~-~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V-DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C-CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c-ChhhhhhhhhhhcccCcc
Confidence 9999995 889998878999999999999999998765 8999999999999997654 2 367889999999998863
Q ss_pred CCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCC
Q 039334 545 LSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKD 624 (782)
Q Consensus 545 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 624 (782)
. .+....+|+.|++++|.+..++.. ..++|+.|++++|... .++.+..+++|+.|++++|.+.+..+..+..
T Consensus 205 -~-----~l~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 205 -S-----TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp -S-----EEECCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred -c-----cccCCchhheeeccCCcccccccc-cCCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2 334567899999999998876632 2478999999998654 3577889999999999999988765544432
Q ss_pred CCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc---cccccceeeccccccCCCCCCCCCC
Q 039334 625 PSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS---ELCNLRKLLLNNCLSLTKLPEMKGL 700 (782)
Q Consensus 625 ~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~---~l~~L~~L~L~~~~~l~~l~~~~~l 700 (782)
. ++|+.|+|++|. +..+|. ...+++|+.|+|++|.++.+|. .+++|+.|++++|. +..++ +..+
T Consensus 277 l---------~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~ 344 (597)
T 3oja_B 277 M---------QRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK-LSTH 344 (597)
T ss_dssp C---------SSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC-CCTT
T ss_pred c---------cCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcC-hhhc
Confidence 2 278888888774 444444 5567788888888887777765 56777777777774 44443 5666
Q ss_pred CcccEEecccCC
Q 039334 701 EKLEELRLSGCI 712 (782)
Q Consensus 701 ~~L~~L~l~~c~ 712 (782)
++|+.|++++|+
T Consensus 345 ~~L~~L~l~~N~ 356 (597)
T 3oja_B 345 HTLKNLTLSHND 356 (597)
T ss_dssp CCCSEEECCSSC
T ss_pred CCCCEEEeeCCC
Confidence 777777777764
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=241.03 Aligned_cols=284 Identities=20% Similarity=0.212 Sum_probs=231.7
Q ss_pred CCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCC-CccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEE
Q 039334 418 PKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLED-ITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLN 493 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~ 493 (782)
++++.|++++|.+..+++. .+++|++|+|++|.+... +..|.++++|++|++++|. +..+|...|..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 5788889998888877654 788999999999988776 4578999999999999985 8888887778999999999
Q ss_pred ccCCCCCCCC-C-CCCCCCCcEEEccCCCCCCCCC-CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC
Q 039334 494 LSRCPMKSLP-S-LPKLTKLRFLILRQCSCLEYMP-SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 494 l~~~~l~~lp-~-l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
+++|.+..++ . +..+++|++|++++|.+....+ .+..+++|+.|++++|. +.......+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999988764 4 8899999999999987655444 37889999999999987 55566667889999999999999988
Q ss_pred CCc--CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCC
Q 039334 571 WLP--KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSA 647 (782)
Q Consensus 571 ~l~--~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 647 (782)
.++ .+..+++|+.|++++|.....++ ......+|+.|++++|.++.++...+... ++|+.|++++|.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~Ls~n~- 259 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL---------VYLRFLNLSYNP- 259 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC---------TTCCEEECCSSC-
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc---------cccCeeECCCCc-
Confidence 765 57889999999999987766544 34455699999999999987765444322 289999999986
Q ss_pred CCCCCc--CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCC
Q 039334 648 LEHLPL--TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINL 714 (782)
Q Consensus 648 l~~l~~--~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l 714 (782)
+..++. +..+++|+.|+|++|.++.++. .+++|+.|++++| .++.++ .+..+++|+.|++++|+..
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCcc
Confidence 444433 7789999999999999998754 6789999999999 566666 3788999999999998543
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=7.3e-24 Score=245.57 Aligned_cols=374 Identities=22% Similarity=0.216 Sum_probs=244.3
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCcEEE
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLSVLE 468 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~ 468 (782)
.+++.|++++|.++. ++...|.++++|++|++++|.+..+++. .+++|++|+|++|.+...++ .|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 468899999998864 3445577899999999999998888765 78899999999998877764 578999999999
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCCCCCCC--CC-CCCCCCCcEEEccCCCCCCCCCC-cc---------------
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL--PS-LPKLTKLRFLILRQCSCLEYMPS-LK--------------- 529 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l--p~-l~~l~~L~~L~l~~~~~~~~~~~-~~--------------- 529 (782)
+++|. +..+|+..|+.+++|++|++++|.++.+ |. +..+++|++|++++|.+....+. +.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 99984 7788876668899999999999988754 55 78889999999988865332211 11
Q ss_pred ------------CCCcccEEEccCCCC------------------------------CCc--------------------
Q 039334 530 ------------ELHELEIIDLSGATS------------------------------LSS-------------------- 547 (782)
Q Consensus 530 ------------~l~~L~~L~l~~~~~------------------------------~~~-------------------- 547 (782)
....+..+++..+.. ...
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 111122222222110 000
Q ss_pred -----------------------------ccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCC
Q 039334 548 -----------------------------FQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSF 598 (782)
Q Consensus 548 -----------------------------~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l 598 (782)
.....+.....|+.|++..+.+..++. ..+..|+.+.+..+... .....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~L~~l~l~~n~~~-~~~~~ 367 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGG-NAFSE 367 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC-CBCTTCCEEEEESCCSC-CBCCC
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc-ccchhhhhcccccccCC-CCccc
Confidence 000112234466777777766555443 23566777777765433 22334
Q ss_pred CCCCCCCEEEcccCCCCCccccccC--C--------CCCC---CCC---CCCCCccEEEecCCCCCCCCCc--CCCCCCC
Q 039334 599 QKLHSLKILDLSEVGFSNFTEIKLK--D--------PSTQ---QLP---FLPCSLSELYLRKCSALEHLPL--TTALKNL 660 (782)
Q Consensus 599 ~~l~~L~~L~l~~~~l~~~~~~~~~--~--------~~~~---~l~---~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L 660 (782)
..+++|+.|+++.|.+......... . .... ..+ ....+|+.+++.++......+. +..++++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 4677788888877766432211000 0 0000 000 1123677777776644443332 5677888
Q ss_pred CEEEeecCCCccccc----cccccceeeccccccCCC-CC-CCCCCCcccEEecccCCCCCCCC-C-CCCCCCcCEEecc
Q 039334 661 ELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTK-LP-EMKGLEKLEELRLSGCINLTELP-N-LNDFPKLDLLDIS 732 (782)
Q Consensus 661 ~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~-l~-~~~~l~~L~~L~l~~c~~l~~l~-~-~~~l~~L~~L~l~ 732 (782)
+.++++.|.+..++. .+++|+.|++++|..... .| .+..+++|+.|++++| .++.++ . +.++++|+.|+++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECC
Confidence 888888887775544 567888888888765544 33 4777888888888888 566654 3 7888888888888
Q ss_pred CCCCCCCChhhhCCCCCCcccEEeCCCCCCCCCcccccCcc
Q 039334 733 NTGIREIPDEILELSRPKIIREVDEETNQAEDVNRGRGGMF 773 (782)
Q Consensus 733 ~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~~~~~~~~ 773 (782)
+|+|+.+|... +..|+.|+.|++++|+|++++.+...-+
T Consensus 527 ~N~l~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 527 HNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TSCCCBCCCGG--GTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCcCCCCChhH--HhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 88888765442 3455666688888888888877655433
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.9e-22 Score=211.82 Aligned_cols=279 Identities=19% Similarity=0.244 Sum_probs=149.6
Q ss_pred CceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC
Q 039334 419 KLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC 497 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 497 (782)
+++.+++.++.+..+|....+.|++|++++|.+...++ .+.++++|++|++++|. +..+++..+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCC
Confidence 56666666666666555444566666666666655543 46666666666666664 44442222366666666666666
Q ss_pred CCCCCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCC-cccccccCCCCCccEEEccCCCCCCCcC
Q 039334 498 PMKSLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLS-SFQQLDFSSHTNLQMVDLSYTQIPWLPK 574 (782)
Q Consensus 498 ~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 574 (782)
.++.+|. +. ++|++|++++|.+....+. +..+++|+.|+++++.... ...+..+.
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------- 168 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-------------------- 168 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--------------------
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc--------------------
Confidence 6666665 33 4566666665543322221 2344444444444433110 01112223
Q ss_pred cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-
Q 039334 575 FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL- 653 (782)
Q Consensus 575 ~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~- 653 (782)
.+++|+.|++++|.++.++... +.+|++|++++|......+.
T Consensus 169 -------------------------~l~~L~~L~l~~n~l~~l~~~~------------~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 169 -------------------------GMKKLSYIRIADTNITTIPQGL------------PPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp -------------------------GCTTCCEEECCSSCCCSCCSSC------------CTTCSEEECTTSCCCEECTGG
T ss_pred -------------------------CCCCcCEEECCCCccccCCccc------------cccCCEEECCCCcCCccCHHH
Confidence 3333333444333333221110 01444444444422221121
Q ss_pred CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC--CC-----
Q 039334 654 TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN--LN----- 721 (782)
Q Consensus 654 ~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~--~~----- 721 (782)
+..+++|+.|++++|.++.++. .+++|++|++++| .++.+| .+..+++|++|++++| .++.++. +.
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYN 289 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCC
T ss_pred hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccc
Confidence 4456677777777777665543 4567777777777 455665 4677788888888887 5666654 32
Q ss_pred -CCCCcCEEeccCCCCCC--CChhhhCCCCCCcccEEeCCCCC
Q 039334 722 -DFPKLDLLDISNTGIRE--IPDEILELSRPKIIREVDEETNQ 761 (782)
Q Consensus 722 -~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~~l~~~~n~ 761 (782)
..++|+.|++++|++.. +++ ..+..+..++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCc--cccccccceeEEEecccC
Confidence 24788889999998763 332 234556666777888874
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=2.3e-22 Score=232.97 Aligned_cols=349 Identities=22% Similarity=0.260 Sum_probs=228.1
Q ss_pred CCceEEEecCCCCCCCCcc---CCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEE
Q 039334 418 PKLQVLAIFKPTFKSLMSS---SFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLN 493 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~---~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~ 493 (782)
+.+++|++++|.+..+++. .+++|++|+|++|.+...++ .|.++++|++|+|++|. +..+|...|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEE
Confidence 4799999999999998865 88999999999999888765 69999999999999995 8999988789999999999
Q ss_pred ccCCCCCCCCC--CCCCCCCcEEEccCCCCCC-CCCC-ccCCCcccEEEccCCCCCCcccccccCC--------------
Q 039334 494 LSRCPMKSLPS--LPKLTKLRFLILRQCSCLE-YMPS-LKELHELEIIDLSGATSLSSFQQLDFSS-------------- 555 (782)
Q Consensus 494 l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~-~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~-------------- 555 (782)
+++|.++.+|. ++.+++|++|++++|.+.. ..|. +..+++|+.|++++|.. ....+..+..
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc-cccccccccchhhhhhhhhhhhcc
Confidence 99999999986 8999999999999998654 2344 58899999999998863 2222111111
Q ss_pred -------------CCCccEEEccCCCCC-------------------------------C--------------------
Q 039334 556 -------------HTNLQMVDLSYTQIP-------------------------------W-------------------- 571 (782)
Q Consensus 556 -------------l~~L~~L~l~~~~~~-------------------------------~-------------------- 571 (782)
...+..+++..+... .
T Consensus 210 ~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 111122222221100 0
Q ss_pred ---------CcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCC--------CCCCCCC--C
Q 039334 572 ---------LPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKD--------PSTQQLP--F 632 (782)
Q Consensus 572 ---------l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------~~~~~l~--~ 632 (782)
...+..+.++..+.+.++... .+..+....+|+.|++.++.+..+....+.. ....... .
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhcccccchhhhhhhhcccccccccccccc-cccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 000112344555555544321 2223444455666666655443322211110 0000000 0
Q ss_pred CCCCccEEEecCCCCC--------------------------CCCCcCCCCCCCCEEEeecCCCccccc-----cccccc
Q 039334 633 LPCSLSELYLRKCSAL--------------------------EHLPLTTALKNLELLDLSNTNLKKLPS-----ELCNLR 681 (782)
Q Consensus 633 ~~~~L~~L~l~~~~~l--------------------------~~l~~~~~l~~L~~L~L~~~~l~~l~~-----~l~~L~ 681 (782)
-.++|+.|+++++... ...+.+..+++|+.+++..+....... .+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 1135666666654321 111223456667777766654443222 566777
Q ss_pred eeeccccccCCCCC-CCCCCCcccEEecccCCCCCC-CCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCC
Q 039334 682 KLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTE-LPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEE 758 (782)
Q Consensus 682 ~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~-l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~ 758 (782)
.++++.|......+ .+..+++|+.|++++|..... .|. +..+++|+.|++++|+|+.+++. .+.+|+.|+.|+++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~--~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQVLNMS 526 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH--HHcCCCCCCEEECC
Confidence 77777774333333 467789999999999865554 455 88999999999999999976543 23556677799999
Q ss_pred CCCCCCCcccccC
Q 039334 759 TNQAEDVNRGRGG 771 (782)
Q Consensus 759 ~n~~~~~~~~~~~ 771 (782)
+|+|++++...+.
T Consensus 527 ~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 527 HNNFFSLDTFPYK 539 (635)
T ss_dssp TSCCCBCCCGGGT
T ss_pred CCcCCCCChhHHh
Confidence 9999999876554
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=5.2e-22 Score=209.97 Aligned_cols=289 Identities=19% Similarity=0.206 Sum_probs=186.7
Q ss_pred CCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccC
Q 039334 418 PKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSR 496 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~ 496 (782)
.+++.+++.++.+..+|..-.++|++|++++|.+...++ .+.++++|++|++++|. +..+++..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC
Confidence 368888888888888877766889999999998877654 78999999999999985 6666444458899999999999
Q ss_pred CCCCCCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCC-cccccccCCCCCccEEEccCCCCCCCc
Q 039334 497 CPMKSLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLS-SFQQLDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 497 ~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
|.++.+|. +. ++|++|++++|.+....+. +..+++|+.|+++++.... ...+..+..+ +|+.|++++|.+..+|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 99998887 54 8899999999876544433 6888899999998886321 2334556666 8888888888888776
Q ss_pred CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC
Q 039334 574 KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP 652 (782)
Q Consensus 574 ~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~ 652 (782)
... .++|+.|++++|......+ .+..+++|+.|++++|.+++..+..+... ++|+.|++++|. +..+|
T Consensus 189 ~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l---------~~L~~L~L~~N~-l~~lp 257 (332)
T 2ft3_A 189 KDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL---------PTLRELHLDNNK-LSRVP 257 (332)
T ss_dssp SSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC---------TTCCEEECCSSC-CCBCC
T ss_pred ccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC---------CCCCEEECCCCc-CeecC
Confidence 421 2677777777776554442 46677777777777776655443222110 144555555442 22333
Q ss_pred c-CCCCCCCCEEEeecCCCccccc-cccccceeeccccccCCCCCCCCCCCcccEEecccCCCC--CCCCC-CCCCCCcC
Q 039334 653 L-TTALKNLELLDLSNTNLKKLPS-ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINL--TELPN-LNDFPKLD 727 (782)
Q Consensus 653 ~-~~~l~~L~~L~L~~~~l~~l~~-~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l--~~l~~-~~~l~~L~ 727 (782)
. +..+++|+.|++++|.++.++. .+..+ ......++|+.|++.+|+.. ...|. +..+++|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--------------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPV--------------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCS--------------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred hhhhcCccCCEEECCCCCCCccChhHcccc--------------ccccccccccceEeecCcccccccCcccccccchhh
Confidence 3 3444444444444444443332 00000 00012466777777777532 22233 66777888
Q ss_pred EEeccCCC
Q 039334 728 LLDISNTG 735 (782)
Q Consensus 728 ~L~l~~~~ 735 (782)
.|++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 88877763
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=6.1e-21 Score=216.08 Aligned_cols=268 Identities=23% Similarity=0.258 Sum_probs=178.6
Q ss_pred CCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC
Q 039334 418 PKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC 497 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 497 (782)
.+++.|+++++.+..+|....++|++|++++|.+...+. .+++|++|++++|. +..+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCC
Confidence 358888888888887777655788888888887765544 56788888888874 666765 5678888888888
Q ss_pred CCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCC
Q 039334 498 PMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTD 577 (782)
Q Consensus 498 ~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~ 577 (782)
.++.+|. .+++|+.|++++|.+.. +|. .+++ |++|++++|.+..+|. .
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~-lp~--~l~~-------------------------L~~L~Ls~N~l~~l~~--~ 159 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTS-LPV--LPPG-------------------------LQELSVSDNQLASLPA--L 159 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSC-CCC--CCTT-------------------------CCEEECCSSCCSCCCC--C
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCc-CCC--CCCC-------------------------CCEEECcCCcCCCcCC--c
Confidence 8777776 45677777777775332 332 1244 4444444444444432 1
Q ss_pred CCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCC
Q 039334 578 LKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTAL 657 (782)
Q Consensus 578 l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l 657 (782)
+++|+.|.+++|.... ++ ..+++|+.|++++|.+++++. .+.+|+.|++++| .+..+|. .+
T Consensus 160 ~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~l~~l~~-------------~~~~L~~L~L~~N-~l~~l~~--~~ 220 (622)
T 3g06_A 160 PSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQLASLPT-------------LPSELYKLWAYNN-RLTSLPA--LP 220 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSCCCC-------------CCTTCCEEECCSS-CCSSCCC--CC
T ss_pred cCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCCCCCCCC-------------ccchhhEEECcCC-cccccCC--CC
Confidence 3445555555543322 22 334566677777666654322 1236777777766 3444443 24
Q ss_pred CCCCEEEeecCCCccccccccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCC
Q 039334 658 KNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGI 736 (782)
Q Consensus 658 ~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l 736 (782)
++|+.|++++|.++.+|..+++|++|++++| .++.+|. .+++|+.|++++| .++.+|. +..+++|+.|++++|++
T Consensus 221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCEEEccCCccCcCCCCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 6788888888888888877888888888887 5667766 5678888888887 6777877 77888888888888887
Q ss_pred C-CCChhhhCCCC
Q 039334 737 R-EIPDEILELSR 748 (782)
Q Consensus 737 ~-~lp~~~~~l~~ 748 (782)
+ ..|..+..+++
T Consensus 297 ~~~~~~~l~~L~~ 309 (622)
T 3g06_A 297 SERTLQALREITS 309 (622)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCcCHHHHHhccc
Confidence 7 45555554443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.2e-21 Score=207.15 Aligned_cols=277 Identities=18% Similarity=0.223 Sum_probs=176.8
Q ss_pred CCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCC-CC-CCCCCCCcEEEc
Q 039334 439 ERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL-PS-LPKLTKLRFLIL 516 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l-p~-l~~l~~L~~L~l 516 (782)
.+++.++++++.+...+..+ .++|++|++++|. +..+++..+..+++|++|++++|.++.+ |. +..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 46788888887776666554 3678888888874 6666554457788888888888887776 44 777888888888
Q ss_pred cCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCC--
Q 039334 517 RQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLH-- 593 (782)
Q Consensus 517 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~-- 593 (782)
++|.+. .+|. +. ++|+.|+++++. +.......+. .+++|+.|++++|....
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~----------------------~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNR-IRKVPKGVFS----------------------GLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSC-CCCCCSGGGS----------------------SCSSCCEEECCSCCCBGGG
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCc-cCccCHhHhC----------------------CCccCCEEECCCCccccCC
Confidence 877643 3332 22 455555555444 2233333344 44455555554443321
Q ss_pred C-CCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC-cCCCCCCCCEEEeecCCCc
Q 039334 594 I-LPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP-LTTALKNLELLDLSNTNLK 671 (782)
Q Consensus 594 ~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~-~~~~l~~L~~L~L~~~~l~ 671 (782)
. ...+..+ +|+.|++++|.++.++... +.+|++|++++|......+ .+..+++|+.|++++|.++
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDL------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSS------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CCcccccCC-ccCEEECcCCCCCccCccc------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 1 1224444 6777777777666543211 1367777777774333332 2677888999999998888
Q ss_pred cccc----cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC--CCC------CCCcCEEeccCCCCC-
Q 039334 672 KLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN--LND------FPKLDLLDISNTGIR- 737 (782)
Q Consensus 672 ~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~------l~~L~~L~l~~~~l~- 737 (782)
.++. .+++|++|++++| .++.+| .+..+++|+.|++++| .++.++. +.. .++|+.|++++|++.
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred cCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccc
Confidence 7764 6788999999888 466777 4788899999999988 6777664 332 477899999999877
Q ss_pred -CCChhhhCCCCCCcccEEeCCCCC
Q 039334 738 -EIPDEILELSRPKIIREVDEETNQ 761 (782)
Q Consensus 738 -~lp~~~~~l~~L~~L~~l~~~~n~ 761 (782)
.+++. .+..++.|+.+++++|.
T Consensus 309 ~~~~~~--~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPA--TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGG--GGTTBCCSTTEEC----
T ss_pred cccCcc--cccccchhhhhhccccc
Confidence 33332 23456666677888774
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=4.1e-21 Score=217.50 Aligned_cols=256 Identities=22% Similarity=0.159 Sum_probs=188.3
Q ss_pred CceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCC
Q 039334 394 EVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGAS 473 (782)
Q Consensus 394 ~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~ 473 (782)
+++.|+++++.+. .+|..++ ++|+.|++++|.+..++. .+++|++|++++|.+...+. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 5789999999887 4555443 799999999999998877 78999999999999876655 78999999999985
Q ss_pred CCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCccccccc
Q 039334 474 SLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDF 553 (782)
Q Consensus 474 ~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l 553 (782)
+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.+. .+|. .+++|+.|++++|. +..++
T Consensus 113 -l~~l~~----~l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~l~~--~~~~L~~L~L~~N~-l~~l~---- 177 (622)
T 3g06_A 113 -LTHLPA----LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLA-SLPA--LPSELCKLWAYNNQ-LTSLP---- 177 (622)
T ss_dssp -CCCCCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CSCCC----
T ss_pred -CCCCCC----CCCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCC-CcCC--ccCCCCEEECCCCC-CCCCc----
Confidence 788876 57899999999999999997 2489999999999744 3332 23455555555554 22211
Q ss_pred CCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCC
Q 039334 554 SSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFL 633 (782)
Q Consensus 554 ~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~ 633 (782)
..+++|+.|++++|.+..+|. .+++|+.|++++|.++.++. .
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~-------------------------~~~~L~~L~L~~N~l~~l~~-------------~ 219 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPT-------------------------LPSELYKLWAYNNRLTSLPA-------------L 219 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC-------------------------CCTTCCEEECCSSCCSSCCC-------------C
T ss_pred ccCCCCcEEECCCCCCCCCCC-------------------------ccchhhEEECcCCcccccCC-------------C
Confidence 223445555555544444332 12456666666666554321 1
Q ss_pred CCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccccccccceeeccccccCCCCC-CCCCCCcccEEecccCC
Q 039334 634 PCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCI 712 (782)
Q Consensus 634 ~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~ 712 (782)
+++|+.|++++| .+..+| ..+++|+.|++++|.++.+|..+++|+.|++++| .++.+| .+.++++|+.|+|++|+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 236777777776 344455 4568899999999999999998899999999998 566777 58899999999999995
Q ss_pred CC
Q 039334 713 NL 714 (782)
Q Consensus 713 ~l 714 (782)
..
T Consensus 296 l~ 297 (622)
T 3g06_A 296 LS 297 (622)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.5e-20 Score=193.71 Aligned_cols=260 Identities=20% Similarity=0.253 Sum_probs=176.6
Q ss_pred CCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEcc
Q 039334 463 TLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLS 540 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 540 (782)
++++++++++. +..+|..+ .++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 90 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----------------- 90 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-----------------
T ss_pred CCeEEEecCCC-ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-----------------
Confidence 55666665552 55555432 2455666666666555543 5555566666665554333
Q ss_pred CCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCCCcc-
Q 039334 541 GATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFSNFT- 618 (782)
Q Consensus 541 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~- 618 (782)
..+..+..+++|++|++++|.+..+|... .++|+.|++++|......+. +..+++|+.|++++|.+...+
T Consensus 91 -------~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 91 -------ISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp -------BCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred -------eCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 33344555556666666666555554211 25677777777655444332 677888889999888775422
Q ss_pred -ccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCC
Q 039334 619 -EIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTK 693 (782)
Q Consensus 619 -~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~ 693 (782)
...+.. .++|+.|++++|. +..+|... .++|+.|++++|.++.++. .+++|++|++++|. ++.
T Consensus 163 ~~~~~~~---------l~~L~~L~l~~n~-l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 230 (330)
T 1xku_A 163 ENGAFQG---------MKKLSYIRIADTN-ITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISA 230 (330)
T ss_dssp CTTGGGG---------CTTCCEEECCSSC-CCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCE
T ss_pred ChhhccC---------CCCcCEEECCCCc-cccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Cce
Confidence 111211 1389999999984 55566522 3899999999999997754 67899999999985 444
Q ss_pred CC--CCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCC----CCCCcccEEeCCCCCCCC
Q 039334 694 LP--EMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILEL----SRPKIIREVDEETNQAED 764 (782)
Q Consensus 694 l~--~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l----~~L~~L~~l~~~~n~~~~ 764 (782)
++ .+..+++|++|++++| .++.+|. +..+++|+.|++++|+|+.+|.....- .....++.+++++|.+..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred eChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 44 4788999999999999 7888988 889999999999999999887654422 235678899999999986
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=4.1e-20 Score=194.43 Aligned_cols=217 Identities=26% Similarity=0.376 Sum_probs=115.1
Q ss_pred CCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEcc
Q 039334 439 ERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILR 517 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~ 517 (782)
+.++.|++++|.+...++.+.++++|++|++++|. +..+|..+ +.+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 44555555555555445555556666666666553 44555544 556666666666666666665 5666666666666
Q ss_pred CCCCCCCCCC-c---------cCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc-CcCCCCcccEEEe
Q 039334 518 QCSCLEYMPS-L---------KELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP-KFTDLKHLSRILL 586 (782)
Q Consensus 518 ~~~~~~~~~~-~---------~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~~~l~~L~~L~l 586 (782)
+|...+.+|. + ..+++|+.|++++|. +.. .+..+..+++|+.|++++|.+..+| .+..+++|+.|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 6555544443 2 235555555555554 222 2234555666666666666666554 4555666666666
Q ss_pred cCcCCCCCCCC-CCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEE
Q 039334 587 RGCRKLHILPS-FQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLD 664 (782)
Q Consensus 587 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~ 664 (782)
++|...+.++. +..+++|+.|++++|.+.+..+..+.. .++|+.|++++|...+.+|. +..+++|+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR---------LTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG---------CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc---------CCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 66555544443 555666666666655443322211111 11455555555555555554 45555555555
Q ss_pred eecC
Q 039334 665 LSNT 668 (782)
Q Consensus 665 L~~~ 668 (782)
+..+
T Consensus 308 l~~~ 311 (328)
T 4fcg_A 308 VPPH 311 (328)
T ss_dssp CCGG
T ss_pred CCHH
Confidence 5443
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.3e-19 Score=199.48 Aligned_cols=242 Identities=23% Similarity=0.310 Sum_probs=198.0
Q ss_pred CceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC
Q 039334 419 KLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC 497 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 497 (782)
..+.++..+..+..+|..-.++++.|+|++|.+...+ ..|.++++|++|+|++|. +..++...|..+++|++|++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC
Confidence 4567777777888887776688999999999887765 578999999999999985 77777666799999999999999
Q ss_pred CCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC
Q 039334 498 PMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK 574 (782)
Q Consensus 498 ~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 574 (782)
.++.+|. +..+++|++|++++|.+....+. +..+++|+.|+++++..+.......+..+++|+.|++++|.+..+|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 9999886 88999999999999976543332 68899999999998776777777788899999999999999999999
Q ss_pred cCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc
Q 039334 575 FTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL 653 (782)
Q Consensus 575 ~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~ 653 (782)
+..+++|+.|++++|......+ .+..+++|+.|++++|.++.+....+... ++|+.|+|++|. +..++.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~L~~N~-l~~~~~ 272 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL---------QSLVEINLAHNN-LTLLPH 272 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC---------TTCCEEECTTSC-CCCCCT
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC---------CCCCEEECCCCC-CCccCh
Confidence 9999999999999987665544 58899999999999999887655443322 288999999884 445543
Q ss_pred --CCCCCCCCEEEeecCCCc
Q 039334 654 --TTALKNLELLDLSNTNLK 671 (782)
Q Consensus 654 --~~~l~~L~~L~L~~~~l~ 671 (782)
+..+++|+.|+|++|.+.
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEE
T ss_pred hHhccccCCCEEEcCCCCcc
Confidence 677889999999887654
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.5e-19 Score=199.67 Aligned_cols=242 Identities=24% Similarity=0.274 Sum_probs=191.5
Q ss_pred CceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC
Q 039334 419 KLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC 497 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 497 (782)
....++..+..+..+|..-.+++++|+|++|.+.... ..|.++++|++|++++|. +..++...|..+++|++|++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCC
Confidence 4456777777777777666678899999988887764 568889999999999884 67776655688999999999999
Q ss_pred CCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC
Q 039334 498 PMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK 574 (782)
Q Consensus 498 ~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~ 574 (782)
.++.+|. +..+++|++|++++|.+....+. +..+++|+.|+++++..+..+....+..+++|+.|++++|.+..+|.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 9888876 78899999999999875543332 68889999999998776777766778889999999999999999998
Q ss_pred cCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc
Q 039334 575 FTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL 653 (782)
Q Consensus 575 ~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~ 653 (782)
+..+++|+.|++++|......+ .+..+++|+.|++++|.++.+....+... ++|+.|+|++|. +..++.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~L~~N~-l~~~~~ 283 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL---------ASLVELNLAHNN-LSSLPH 283 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC---------TTCCEEECCSSC-CSCCCT
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC---------CCCCEEECCCCc-CCccCh
Confidence 8899999999999987766544 48889999999999998877655443321 288899998884 445553
Q ss_pred --CCCCCCCCEEEeecCCCc
Q 039334 654 --TTALKNLELLDLSNTNLK 671 (782)
Q Consensus 654 --~~~l~~L~~L~L~~~~l~ 671 (782)
+..+++|+.|+|++|.+.
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEE
T ss_pred HHhccccCCCEEEccCCCcC
Confidence 667888999999887654
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=9.7e-21 Score=198.01 Aligned_cols=241 Identities=20% Similarity=0.237 Sum_probs=144.0
Q ss_pred CCccEEEEecCCCCC---CCccccCCCCCcEEEeec-CCCCCCCchHHhcCCCCccEEEccCCCCC-CCCC-CCCCCCCc
Q 039334 439 ERLTVLVLRNCDMLE---DITGIKELKTLSVLEISG-ASSLKSNPDELFDGMAQLQSLNLSRCPMK-SLPS-LPKLTKLR 512 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~---~~~~l~~l~~L~~L~L~~-~~~~~~lp~~~~~~l~~L~~L~l~~~~l~-~lp~-l~~l~~L~ 512 (782)
.+++.|+++++.+.+ .++.+.++++|++|++++ |...+.+|..+ +.+++|++|++++|.++ .+|. +..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456666666666654 456677888888888874 54445677665 77888888888888877 5676 77888888
Q ss_pred EEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCC-CccEEEccCCCCC-CCc-CcCCCCcccEEEecC
Q 039334 513 FLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHT-NLQMVDLSYTQIP-WLP-KFTDLKHLSRILLRG 588 (782)
Q Consensus 513 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~-~~~~l~~L~~L~l~~ 588 (782)
+|++++|.+...+|. +..+++|+.|++++|. +....+..+..++ +|+.|++++|.+. .+| .+..++ |+.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 888888876655554 5677777777777765 3333345566665 7777777777665 233 344443 66666655
Q ss_pred cCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeec
Q 039334 589 CRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSN 667 (782)
Q Consensus 589 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~ 667 (782)
|......+ .+..+++|+.|++++|.++. ..+.+..+++|+.|++++
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------------~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF---------------------------------DLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECC---------------------------------BGGGCCCCTTCCEEECCS
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceee---------------------------------ecCcccccCCCCEEECcC
Confidence 54433333 24555555555555554432 222233345555555555
Q ss_pred CCCc-cccc---cccccceeeccccccCCCCCCCCCCCcccEEecccCCCCC
Q 039334 668 TNLK-KLPS---ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLT 715 (782)
Q Consensus 668 ~~l~-~l~~---~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~ 715 (782)
|.++ .+|. .+++|++|++++|.....+|....+++|+.|++.+|+.+.
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 5554 3333 3445555555555433345544555555555555554343
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=197.64 Aligned_cols=269 Identities=17% Similarity=0.258 Sum_probs=132.4
Q ss_pred EEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCC
Q 039334 423 LAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKS 501 (782)
Q Consensus 423 L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~ 501 (782)
.+++++.+..+|..-.++|++|++++|.+...++ .+.++++|++|++++|. +..+++..+..+++|++|++++|.++.
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 4445555555554444556666666665554443 45666666666666653 444443334566666666666666665
Q ss_pred CCC--CCCCCCCcEEEccCCCCCCCCC--CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC-c-Cc
Q 039334 502 LPS--LPKLTKLRFLILRQCSCLEYMP--SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL-P-KF 575 (782)
Q Consensus 502 lp~--l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~-~~ 575 (782)
+|. +..+++|++|++++|.+....+ .+..+++|+.|++++|..+....+..+..+++|+.|++++|.+..+ | .+
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 554 5556666666666655332222 1455555555555555333444344455555666666655555433 1 34
Q ss_pred CCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcC
Q 039334 576 TDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLT 654 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~ 654 (782)
..+++|+.|++++|........ +..+++|+.|++++|.+++..... ++..
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----------------------------l~~~ 245 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE-----------------------------LSTG 245 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------------------------
T ss_pred hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc-----------------------------cccc
Confidence 4444444444444432111111 122445555555555443321110 0111
Q ss_pred CCCCCCCEEEeecCCCccccccccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEec
Q 039334 655 TALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDI 731 (782)
Q Consensus 655 ~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l 731 (782)
...+.++.++++++.+.. + .+..+| .+..+++|+.|++++| .++.+|. +..+++|+.|++
T Consensus 246 ~~~~~l~~l~L~~~~l~~---------------~-~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITD---------------E-SLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp -CCCCCCEEEEESCBCCH---------------H-HHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccC---------------c-chhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 223445555555544331 1 011112 2344566666666666 4555655 456666666666
Q ss_pred cCCCCCC
Q 039334 732 SNTGIRE 738 (782)
Q Consensus 732 ~~~~l~~ 738 (782)
++|++..
T Consensus 309 ~~N~~~~ 315 (353)
T 2z80_A 309 HTNPWDC 315 (353)
T ss_dssp CSSCBCC
T ss_pred eCCCccC
Confidence 6666553
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=190.32 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=182.2
Q ss_pred CCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEe
Q 039334 392 LREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEI 469 (782)
Q Consensus 392 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 469 (782)
..+++.|++++|.+. .+|..++. +++|++|++++|.+..+|.. .+++|++|++++|.+...+..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 467889999999887 55655554 89999999999999877765 889999999999998877778999999999999
Q ss_pred ecCCCCCCCchHH--------hcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEcc
Q 039334 470 SGASSLKSNPDEL--------FDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLS 540 (782)
Q Consensus 470 ~~~~~~~~lp~~~--------~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 540 (782)
++|...+.+|..+ +..+++|++|++++|.++.+|. +..+++|++|++++|.+....+.+..+++|+.|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 9987788888765 1248999999999999999998 999999999999999876544557889999999999
Q ss_pred CCCCCCcccccccCCCCCccEEEccCCCCC-CCc-CcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCCC
Q 039334 541 GATSLSSFQQLDFSSHTNLQMVDLSYTQIP-WLP-KFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFSN 616 (782)
Q Consensus 541 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~-~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~ 616 (782)
+|.... ..+..+..+++|+.|++++|++. .+| .+..+++|+.|++++|...+.+|. +..+++|+.+++..+.+..
T Consensus 238 ~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 238 GCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 887443 44567888999999999987754 355 578889999999999888876664 8889999999887765543
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=3.7e-23 Score=229.70 Aligned_cols=335 Identities=20% Similarity=0.175 Sum_probs=189.5
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCC-----Ccc--CCCCccEEEEecCCCCCC-Cccc-cCCC-
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSL-----MSS--SFERLTVLVLRNCDMLED-ITGI-KELK- 462 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~--~l~~L~~L~L~~~~~~~~-~~~l-~~l~- 462 (782)
++++.|+++++.+.......++..+++|++|++++|.+... +.. .+++|++|++++|.+... +..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35677888888776554555566778888888888877632 222 567788888887765432 1111 2233
Q ss_pred ---CCcEEEeecCCCCC-----CCchHHhcCCCCccEEEccCCCCCCC-----CC--CCCCCCCcEEEccCCCCCCCC--
Q 039334 463 ---TLSVLEISGASSLK-----SNPDELFDGMAQLQSLNLSRCPMKSL-----PS--LPKLTKLRFLILRQCSCLEYM-- 525 (782)
Q Consensus 463 ---~L~~L~L~~~~~~~-----~lp~~~~~~l~~L~~L~l~~~~l~~l-----p~--l~~l~~L~~L~l~~~~~~~~~-- 525 (782)
+|++|++++|. +. .++.. +..+++|++|++++|.++.. .. ....++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~-i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC-LTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCC-CCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 68888887774 44 23333 37777888888888776531 11 223556888888777654321
Q ss_pred --CC-ccCCCcccEEEccCCCCCCcccccccC-----CCCCccEEEccCCCCCCC-----c-CcCCCCcccEEEecCcCC
Q 039334 526 --PS-LKELHELEIIDLSGATSLSSFQQLDFS-----SHTNLQMVDLSYTQIPWL-----P-KFTDLKHLSRILLRGCRK 591 (782)
Q Consensus 526 --~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~l-----~-~~~~l~~L~~L~l~~~~~ 591 (782)
+. +..+++|+.|++++|. +.......+. ..++|+.|++++|.+... + .+..+++|+.|++++|..
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 22 3556777777777766 3322222221 245777777777776652 2 244567777777777643
Q ss_pred CCC----C-CC-CCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCC----CCc--CCCCCC
Q 039334 592 LHI----L-PS-FQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEH----LPL--TTALKN 659 (782)
Q Consensus 592 ~~~----~-~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~----l~~--~~~l~~ 659 (782)
... + +. ...+++|+.|++++|.++..+...+... +. -.++|++|++++|..... +.. ....++
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~----l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV----LR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH----HH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH----Hh-hCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 221 0 11 2346677777777776665321111000 00 012677777777632111 111 122357
Q ss_pred CCEEEeecCCCccc-----cc---cccccceeeccccccCCCC-C-C----CC-CCCcccEEecccCCCCC-----CCCC
Q 039334 660 LELLDLSNTNLKKL-----PS---ELCNLRKLLLNNCLSLTKL-P-E----MK-GLEKLEELRLSGCINLT-----ELPN 719 (782)
Q Consensus 660 L~~L~L~~~~l~~l-----~~---~l~~L~~L~L~~~~~l~~l-~-~----~~-~l~~L~~L~l~~c~~l~-----~l~~ 719 (782)
|+.|++++|.++.. +. .+++|++|++++|. ++.. + . +. ..++|++|++++| .++ .+|.
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~ 392 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA 392 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHH
Confidence 77777777766632 22 34677777777663 2221 1 1 11 1457777777776 444 3444
Q ss_pred -CCCCCCcCEEeccCCCCC
Q 039334 720 -LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 720 -~~~l~~L~~L~l~~~~l~ 737 (782)
+..+++|+.|++++|+++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHCCCCCEEECCSSSCC
T ss_pred HHHhCCCccEEECCCCCCC
Confidence 555677777777777665
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=191.22 Aligned_cols=265 Identities=20% Similarity=0.235 Sum_probs=179.7
Q ss_pred CCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEE
Q 039334 461 LKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEII 537 (782)
Q Consensus 461 l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L 537 (782)
++.....+.+++ .+..+|..+ .++|++|++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCC-Ccccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455677776 478888754 3588899999988888776 88888888998888876554443 6777788888
Q ss_pred EccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC---cCCCCcccEEEecCcCCCCCC--CCCCCCCCCCEEEcccC
Q 039334 538 DLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK---FTDLKHLSRILLRGCRKLHIL--PSFQKLHSLKILDLSEV 612 (782)
Q Consensus 538 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~---~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~ 612 (782)
++++|. +.......+..+++|++|++++|.+..++. +..+++|+.|++++|.....+ ..+..+++|+.|++++|
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 887776 444444456777777777777777776654 556666777777666433322 23555666666666655
Q ss_pred CCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc----cccccceeecccc
Q 039334 613 GFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNC 688 (782)
Q Consensus 613 ~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~ 688 (782)
.+++..+. .+..+++|+.|++++|.++.+|. .+++|+.|++++|
T Consensus 185 ~l~~~~~~--------------------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 185 DLQSYEPK--------------------------------SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TCCEECTT--------------------------------TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred CcCccCHH--------------------------------HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 54432111 14456677777777777776665 3677888888777
Q ss_pred ccCCCCC-----CCCCCCcccEEecccCCCCC-----CCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeC
Q 039334 689 LSLTKLP-----EMKGLEKLEELRLSGCINLT-----ELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDE 757 (782)
Q Consensus 689 ~~l~~l~-----~~~~l~~L~~L~l~~c~~l~-----~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~ 757 (782)
. ++.++ .....+.++.+++.++ .+. .+|. +..+++|+.|++++|+++.+|..+ +..++.|+.|++
T Consensus 233 ~-l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~--~~~l~~L~~L~L 308 (353)
T 2z80_A 233 D-LDTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI--FDRLTSLQKIWL 308 (353)
T ss_dssp B-CTTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEEC
T ss_pred c-cccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH--HhcCCCCCEEEe
Confidence 4 33332 2334567888888877 343 2455 678999999999999999999875 245667779999
Q ss_pred CCCCCCCCc
Q 039334 758 ETNQAEDVN 766 (782)
Q Consensus 758 ~~n~~~~~~ 766 (782)
++|+++...
T Consensus 309 ~~N~~~~~~ 317 (353)
T 2z80_A 309 HTNPWDCSC 317 (353)
T ss_dssp CSSCBCCCH
T ss_pred eCCCccCcC
Confidence 999988654
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.8e-20 Score=195.96 Aligned_cols=239 Identities=22% Similarity=0.221 Sum_probs=140.5
Q ss_pred CceEEEecCCCCCC---CCcc--CCCCccEEEEec-CCCCC-CCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccE
Q 039334 419 KLQVLAIFKPTFKS---LMSS--SFERLTVLVLRN-CDMLE-DITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQS 491 (782)
Q Consensus 419 ~L~~L~l~~~~~~~---~~~~--~l~~L~~L~L~~-~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~ 491 (782)
+++.|++.++.+.+ ++.. .+++|++|++++ |.+.. .+..+.++++|++|++++|...+.+|..+ ..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCE
Confidence 44555555555443 2222 555666666663 44443 23456666666666666664223555543 66666666
Q ss_pred EEccCCCCC-CCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCC-cccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 039334 492 LNLSRCPMK-SLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELH-ELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYT 567 (782)
Q Consensus 492 L~l~~~~l~-~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 567 (782)
|++++|.++ .+|. +..+++|++|++++|.+.+.+|. +..++ +|+.|++++|. +....+..+..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCc-ccEEECcCC
Confidence 666666655 4555 66666666666666665444443 45555 66666666665 2333344555555 777777777
Q ss_pred CCCCC-c-CcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCC
Q 039334 568 QIPWL-P-KFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKC 645 (782)
Q Consensus 568 ~~~~l-~-~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 645 (782)
.+... + .+..+++|+.|++++|.....++.+..+++|+.|++++|.+++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------------- 259 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT---------------------------- 259 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC----------------------------
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc----------------------------
Confidence 66533 2 46667777777777776655556666777777777777665422
Q ss_pred CCCCCCCc-CCCCCCCCEEEeecCCCc-cccc--cccccceeeccccccCCC
Q 039334 646 SALEHLPL-TTALKNLELLDLSNTNLK-KLPS--ELCNLRKLLLNNCLSLTK 693 (782)
Q Consensus 646 ~~l~~l~~-~~~l~~L~~L~L~~~~l~-~l~~--~l~~L~~L~L~~~~~l~~ 693 (782)
+|. +..+++|+.|++++|.++ .+|. .+++|+.|++++|+.+..
T Consensus 260 -----~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 -----LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -----CCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred -----CChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 221 334566777777777666 4444 567777777777764443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.2e-18 Score=191.62 Aligned_cols=195 Identities=28% Similarity=0.422 Sum_probs=120.1
Q ss_pred cCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCC
Q 039334 529 KELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLK 605 (782)
Q Consensus 529 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 605 (782)
..+++|+.|++++|. +....+..|..+++|+.|++++|.+..++ .+..+++|+.|++++|......+ .+..+++|+
T Consensus 85 ~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 85 KHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163 (440)
T ss_dssp SSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred hCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence 444444444444443 33444567788899999999999988876 37778888888888876554443 377778888
Q ss_pred EEEccc-CCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc----ccccc
Q 039334 606 ILDLSE-VGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS----ELCNL 680 (782)
Q Consensus 606 ~L~l~~-~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L 680 (782)
.|++++ +.+..+....+.. ..+|+.|++++| .+..+|.+..+++|+.|+|++|.++.++. .+++|
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~---------l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEG---------LSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp EEECCCCTTCCEECTTTTTT---------CSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred EeCCCCCCCcceeCcchhhc---------ccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhhhccCccC
Confidence 888877 3333333222221 126667777666 44555666666666666666666665533 45566
Q ss_pred ceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCC
Q 039334 681 RKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGI 736 (782)
Q Consensus 681 ~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l 736 (782)
++|++++|. ++.++ .+.++++|+.|+|++| .++.++. +..+++|+.|++++|++
T Consensus 234 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 234 QKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 666666663 33332 3556666666666666 4555554 55666666666666654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.1e-18 Score=192.54 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=125.1
Q ss_pred cCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCC
Q 039334 529 KELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLK 605 (782)
Q Consensus 529 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~ 605 (782)
..+++|+.|++++|. +....+..|..+++|+.|++++|.+..++ .+..+++|+.|++++|......+ .+..+++|+
T Consensus 96 ~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 444444444444443 33444556778899999999999988776 37778888888888876554443 377788888
Q ss_pred EEEccc-CCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc----ccccc
Q 039334 606 ILDLSE-VGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS----ELCNL 680 (782)
Q Consensus 606 ~L~l~~-~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L 680 (782)
.|++++ +.+..+....+.. ..+|+.|++++| .+..+|.+..+++|+.|+|++|.++.++. .+++|
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~---------l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEG---------LFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp EEECCCCTTCCEECTTTTTT---------CTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred EEeCCCCCCccccChhhccC---------CCCCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCC
Confidence 888877 4444333222221 126777777776 44555666667777777777777766543 45667
Q ss_pred ceeeccccccCCCC-C-CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCC
Q 039334 681 RKLLLNNCLSLTKL-P-EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 681 ~~L~L~~~~~l~~l-~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~ 737 (782)
++|++++|. ++.+ + .+.++++|+.|+|++| .++.++. +..+++|+.|++++|++.
T Consensus 245 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 245 KKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCcC
Confidence 777777663 3333 2 3566677777777766 5555554 566677777777776643
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=5.1e-19 Score=184.69 Aligned_cols=239 Identities=20% Similarity=0.248 Sum_probs=164.1
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCcc-ccCCCCCcEEEeecCCCCCCC---chHHhcCCCCccEEEccC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITG-IKELKTLSVLEISGASSLKSN---PDELFDGMAQLQSLNLSR 496 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~l---p~~~~~~l~~L~~L~l~~ 496 (782)
+.+++.++.+..+|....++|++|++++|.+...++. +.++++|++|++++|. +..+ +..+ ..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCC
Confidence 3566666666666666557888888888887766553 6788888888888874 5544 4554 6688888888888
Q ss_pred CCCCCCCC-CCCCCCCcEEEccCCCCCCCCC--CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCC--
Q 039334 497 CPMKSLPS-LPKLTKLRFLILRQCSCLEYMP--SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPW-- 571 (782)
Q Consensus 497 ~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-- 571 (782)
|.+..+|. +..+++|++|++++|.+....+ .+..+++|+.|+++++. +....+..+..+++|+.|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccccc
Confidence 88888887 7788888888888886554332 36778888888888776 344445566777888888888877654
Q ss_pred Cc-CcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCC
Q 039334 572 LP-KFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALE 649 (782)
Q Consensus 572 l~-~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~ 649 (782)
+| .+..+++|+.|++++|......+ .+..+++|+.|++++|.+++.....+... ++|+.|++++|....
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---------~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL---------NSLQVLDYSLNHIMT 237 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC---------TTCCEEECTTSCCCB
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc---------ccCCEeECCCCCCcc
Confidence 33 46677778888887776555433 46777788888888877766544333211 267777777775444
Q ss_pred CCCc-CCCC-CCCCEEEeecCCCc
Q 039334 650 HLPL-TTAL-KNLELLDLSNTNLK 671 (782)
Q Consensus 650 ~l~~-~~~l-~~L~~L~L~~~~l~ 671 (782)
..+. +..+ ++|+.|++++|.+.
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHHHhhhccCCEEEccCCCee
Confidence 4443 4455 37777777777665
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=4.9e-19 Score=182.75 Aligned_cols=193 Identities=23% Similarity=0.336 Sum_probs=96.8
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC-
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP- 498 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~- 498 (782)
+++++.++.+..+|....+.|++|++++|.+...++ .+..+++|++|++++|. +..+++..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCC
Confidence 344444445544444444556666666665555442 45666666666666653 444433333566666666666664
Q ss_pred CCCC-CC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC-
Q 039334 499 MKSL-PS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK- 574 (782)
Q Consensus 499 l~~l-p~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~- 574 (782)
++.+ |. +..+++|++|++++|.+....+. +..+++|+.|+++++. +.......+..+++|+.|++++|.+..++.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 5555 23 55666666666666654433232 3455555555555544 233333334455555555555555544431
Q ss_pred -cCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCC
Q 039334 575 -FTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 575 -~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 615 (782)
+..+++|+.|++++|......+ .+..+++|+.|++++|.++
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 4444445555544444333222 2444444555555444443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=5.3e-20 Score=192.94 Aligned_cols=224 Identities=18% Similarity=0.226 Sum_probs=98.6
Q ss_pred cCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccE
Q 039334 484 DGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQM 561 (782)
Q Consensus 484 ~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 561 (782)
..+++|++|++++|.++.++. +..+++|++|++++|.+....+ +..+++|+.|++++|.. . .+...++|+.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~-----~l~~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-Q-----ELLVGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-E-----EEEECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-c-----cccCCCCcCE
Confidence 344444444444444444432 4444444444444444322111 44444444444444431 1 1112245555
Q ss_pred EEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEE
Q 039334 562 VDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSEL 640 (782)
Q Consensus 562 L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L 640 (782)
|++++|.+..++. ..+++|+.|++++|......+ .+..+++|+.|++++|.++......+
T Consensus 104 L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------ 164 (317)
T 3o53_A 104 LHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------------------ 164 (317)
T ss_dssp EECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG------------------
T ss_pred EECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH------------------
Confidence 5555555544331 113444555554443333222 24445555555555555443322111
Q ss_pred EecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCC
Q 039334 641 YLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTEL 717 (782)
Q Consensus 641 ~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l 717 (782)
...+++|+.|++++|.++.++. .+++|++|++++| .++.++ .+..+++|+.|++++| .++.+
T Consensus 165 -------------~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l 229 (317)
T 3o53_A 165 -------------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLI 229 (317)
T ss_dssp -------------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEE
T ss_pred -------------hhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccch
Confidence 1123344444444444443333 2444444444444 222232 3444555555555555 44455
Q ss_pred CC-CCCCCCcCEEeccCCCCC--CCChhhhCCCC
Q 039334 718 PN-LNDFPKLDLLDISNTGIR--EIPDEILELSR 748 (782)
Q Consensus 718 ~~-~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~ 748 (782)
|. +..+++|+.|++++|+++ .+|..+..+++
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 54 555556666666665554 34444444333
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=4.2e-22 Score=221.21 Aligned_cols=336 Identities=20% Similarity=0.244 Sum_probs=214.2
Q ss_pred CCceEEEecCCCCCCCCcc----CCCCccEEEEecCCCCCC-----CccccCCCCCcEEEeecCCCCCC-CchHHhcCCC
Q 039334 418 PKLQVLAIFKPTFKSLMSS----SFERLTVLVLRNCDMLED-----ITGIKELKTLSVLEISGASSLKS-NPDELFDGMA 487 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~----~l~~L~~L~L~~~~~~~~-----~~~l~~l~~L~~L~L~~~~~~~~-lp~~~~~~l~ 487 (782)
++++.|+++++.+...... .+++|++|++++|.+... +..+..+++|++|++++|. +.. .+..++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHh
Confidence 4678888888877654322 678888888888876532 3456777888888888875 433 3344445555
Q ss_pred ----CccEEEccCCCCCC-----CCC-CCCCCCCcEEEccCCCCCCCCCC------ccCCCcccEEEccCCCCCCccc--
Q 039334 488 ----QLQSLNLSRCPMKS-----LPS-LPKLTKLRFLILRQCSCLEYMPS------LKELHELEIIDLSGATSLSSFQ-- 549 (782)
Q Consensus 488 ----~L~~L~l~~~~l~~-----lp~-l~~l~~L~~L~l~~~~~~~~~~~------~~~l~~L~~L~l~~~~~~~~~~-- 549 (782)
+|++|++++|.++. +|. +..+++|++|++++|.+....+. ....++|+.|++++|. +....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHH
Confidence 68888888888773 455 77888888888888874322111 1335678888888876 33322
Q ss_pred --ccccCCCCCccEEEccCCCCCCCc--CcC-----CCCcccEEEecCcCCCCC-----CCCCCCCCCCCEEEcccCCCC
Q 039334 550 --QLDFSSHTNLQMVDLSYTQIPWLP--KFT-----DLKHLSRILLRGCRKLHI-----LPSFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 550 --~~~l~~l~~L~~L~l~~~~~~~l~--~~~-----~l~~L~~L~l~~~~~~~~-----~~~l~~l~~L~~L~l~~~~l~ 615 (782)
...+..+++|++|++++|.+.... .+. ..++|+.|++++|..... ...+..+++|+.|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 234556788888888888765321 111 255788888888754432 223556788888888888776
Q ss_pred CccccccCCCCCCCCCCCCCCccEEEecCCCCCCC-----CCc-CCCCCCCCEEEeecCCCcccc-----c----ccccc
Q 039334 616 NFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEH-----LPL-TTALKNLELLDLSNTNLKKLP-----S----ELCNL 680 (782)
Q Consensus 616 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-----l~~-~~~l~~L~~L~L~~~~l~~l~-----~----~l~~L 680 (782)
..+...+... +....++|++|++++|. ++. ++. +..+++|+.|++++|.++... . ..++|
T Consensus 241 ~~~~~~l~~~----~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 315 (461)
T 1z7x_W 241 DVGMAELCPG----LLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315 (461)
T ss_dssp HHHHHHHHHH----HTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred hHHHHHHHHH----HhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence 5332111100 00012378888888873 433 332 445788888888888776322 1 23588
Q ss_pred ceeeccccccCCCC-----C-CCCCCCcccEEecccCCCCCCCC-----C-CC-CCCCcCEEeccCCCCC-----CCChh
Q 039334 681 RKLLLNNCLSLTKL-----P-EMKGLEKLEELRLSGCINLTELP-----N-LN-DFPKLDLLDISNTGIR-----EIPDE 742 (782)
Q Consensus 681 ~~L~L~~~~~l~~l-----~-~~~~l~~L~~L~l~~c~~l~~l~-----~-~~-~l~~L~~L~l~~~~l~-----~lp~~ 742 (782)
++|++++|. ++.. + .+..+++|++|++++| .++... . +. .+++|+.|++++|+++ .+|..
T Consensus 316 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 316 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred eeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 888888885 3322 2 2455688888888887 454321 1 11 2678888888888887 56666
Q ss_pred hhCCCCCCcccEEeCCCCCCCCC
Q 039334 743 ILELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 743 ~~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
+..+ +.|+.|++++|++++.
T Consensus 394 l~~~---~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 394 LLAN---HSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHC---CCCCEEECCSSSCCHH
T ss_pred HHhC---CCccEEECCCCCCCHH
Confidence 6554 4455778888888764
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.1e-18 Score=180.03 Aligned_cols=234 Identities=24% Similarity=0.280 Sum_probs=139.4
Q ss_pred cEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCC---CC-CCCCCCCcEEEcc
Q 039334 442 TVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL---PS-LPKLTKLRFLILR 517 (782)
Q Consensus 442 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l---p~-l~~l~~L~~L~l~ 517 (782)
+.++++++.+...+..+. ++|++|++++|. +..+|..+|..+++|++|++++|.++.+ |. +..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 456777766666655442 578888888774 6777777667788888888888877654 34 5567778888887
Q ss_pred CCCCCCCCCCccCCCcccEEEccCCCCCCcccc-cccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCC-
Q 039334 518 QCSCLEYMPSLKELHELEIIDLSGATSLSSFQQ-LDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLH- 593 (782)
Q Consensus 518 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~- 593 (782)
+|.+....+.+..+++|+.|+++++.. ..... ..+..+++|+.|++++|.+...+ .+..+++|+.|++++|....
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 776443222356666666666666542 22211 34555566666666655554322 24445555555555544332
Q ss_pred -CCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCc
Q 039334 594 -ILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLK 671 (782)
Q Consensus 594 -~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~ 671 (782)
....+..+++|+.|++++|.+++. .|. +..+++|+.|++++|.++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------------~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQL---------------------------------SPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEE---------------------------------CTTTTTTCTTCCEEECTTSCCS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCc---------------------------------CHHHhcCCCCCCEEECCCCccC
Confidence 122344444555555544443322 222 455667777777777777
Q ss_pred cccc----cccccceeeccccccCCCCC-CCCCCC-cccEEecccCC
Q 039334 672 KLPS----ELCNLRKLLLNNCLSLTKLP-EMKGLE-KLEELRLSGCI 712 (782)
Q Consensus 672 ~l~~----~l~~L~~L~L~~~~~l~~l~-~~~~l~-~L~~L~l~~c~ 712 (782)
.++. .+++|+.|++++|......+ .+..++ +|+.|++++|+
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6554 46777888887775444444 355663 78888888874
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.4e-18 Score=177.52 Aligned_cols=171 Identities=22% Similarity=0.276 Sum_probs=105.9
Q ss_pred cEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCC-CC-CCCCCCCcEEEccCC
Q 039334 442 TVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL-PS-LPKLTKLRFLILRQC 519 (782)
Q Consensus 442 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l-p~-l~~l~~L~~L~l~~~ 519 (782)
+.++++++.+...+..+ .++|++|++++|. +..++...+..+++|++|++++|.++.+ |. +..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56677766666555433 4678888888774 6666655557788888888888877766 44 777788888888877
Q ss_pred CCCCCC-CC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC--cCCCCcccEEEecCcCCCCCC
Q 039334 520 SCLEYM-PS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK--FTDLKHLSRILLRGCRKLHIL 595 (782)
Q Consensus 520 ~~~~~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~ 595 (782)
.....+ +. +..+++|+.|+++++. +....+..+..+++|+.|++++|.+..++. +..+++|+.|++++|......
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 633333 32 5667777777777665 344444556666666667666666665542 455556666666555433333
Q ss_pred CC-CCCCCCCCEEEcccCCCCC
Q 039334 596 PS-FQKLHSLKILDLSEVGFSN 616 (782)
Q Consensus 596 ~~-l~~l~~L~~L~l~~~~l~~ 616 (782)
+. +..+++|+.|++++|.+++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCE
T ss_pred HHHhcCccccCEEECCCCcccc
Confidence 22 4555555555555555443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=5.2e-19 Score=185.39 Aligned_cols=229 Identities=14% Similarity=0.116 Sum_probs=151.3
Q ss_pred ccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEcc
Q 039334 489 LQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLS 565 (782)
Q Consensus 489 L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 565 (782)
++.++++.+.+...+. +..+++|++|++++|.+....+. +..+++|+.|++++|.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---------------------- 69 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV---------------------- 69 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC----------------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc----------------------
Confidence 3444444444433332 34456667777766654433322 4555555555555544
Q ss_pred CCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCC
Q 039334 566 YTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKC 645 (782)
Q Consensus 566 ~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 645 (782)
+..++.+..+++|+.|++++|.... +...++|+.|++++|.+++.....+ ++|+.|++++|
T Consensus 70 ---l~~~~~~~~l~~L~~L~Ls~n~l~~----l~~~~~L~~L~l~~n~l~~~~~~~~------------~~L~~L~l~~N 130 (317)
T 3o53_A 70 ---LYETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSRG------------QGKKNIYLANN 130 (317)
T ss_dssp ---CEEEEEETTCTTCCEEECCSSEEEE----EEECTTCCEEECCSSCCSEEEECCC------------SSCEEEECCSS
T ss_pred ---CCcchhhhhcCCCCEEECcCCcccc----ccCCCCcCEEECCCCccCCcCcccc------------CCCCEEECCCC
Confidence 4333334444445555554443211 1123567777777776665543221 26778888777
Q ss_pred CCCCCCCc-CCCCCCCCEEEeecCCCccccc-----cccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCC
Q 039334 646 SALEHLPL-TTALKNLELLDLSNTNLKKLPS-----ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPN 719 (782)
Q Consensus 646 ~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~-----~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~ 719 (782)
......+. +..+++|+.|++++|.++.++. .+++|++|++++| .++.++....+++|+.|++++| .++.+|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 208 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGP 208 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECG
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCC-cCCcchh
Confidence 43333332 5668899999999999887543 4689999999999 5677776667999999999998 7878877
Q ss_pred -CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCC
Q 039334 720 -LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAE 763 (782)
Q Consensus 720 -~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~ 763 (782)
+..+++|+.|++++|+++.+|..+ ..++.|+.+++++|.++
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~l~~~~---~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVLIEKAL---RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTC---CCCTTCCEEECTTCCCB
T ss_pred hhcccCcccEEECcCCcccchhhHh---hcCCCCCEEEccCCCcc
Confidence 888999999999999999998765 55667779999999998
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.7e-18 Score=192.23 Aligned_cols=220 Identities=18% Similarity=0.230 Sum_probs=101.5
Q ss_pred CccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEcc
Q 039334 488 QLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLS 565 (782)
Q Consensus 488 ~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 565 (782)
+|++|++++|.++.++. +..+++|++|++++|.+....| +..+++|+.|++++|. +.. +...++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~-----l~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQE-----LLVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEE-----EEECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCC-----CCCCCCcCEEECc
Confidence 44444444444444432 4444444444444444322222 4444444444444443 111 1122555666666
Q ss_pred CCCCCCCcCcCCCCcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecC
Q 039334 566 YTQIPWLPKFTDLKHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRK 644 (782)
Q Consensus 566 ~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 644 (782)
+|.+..++. ..+++|+.|++++|......+ .++.+++|+.|++++|.+++..+..+.
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------------------- 165 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------------------- 165 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG---------------------
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh---------------------
Confidence 655554432 123455555555544433322 244555555666655555443222111
Q ss_pred CCCCCCCCcCCCCCCCCEEEeecCCCccccc--cccccceeeccccccCCCCC-CCCCCCcccEEecccCCCCCCCCC-C
Q 039334 645 CSALEHLPLTTALKNLELLDLSNTNLKKLPS--ELCNLRKLLLNNCLSLTKLP-EMKGLEKLEELRLSGCINLTELPN-L 720 (782)
Q Consensus 645 ~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~-~ 720 (782)
..+++|+.|+|++|.++.+|. .+++|+.|+|++|. ++.+| .+..+++|+.|++++| .++.+|. +
T Consensus 166 ----------~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l 233 (487)
T 3oja_A 166 ----------ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKAL 233 (487)
T ss_dssp ----------GGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTC
T ss_pred ----------hhCCcccEEecCCCccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhh
Confidence 123344444444444444333 34444444444442 22222 3445556666666665 4555555 5
Q ss_pred CCCCCcCEEeccCCCCC--CCChhhhCCCC
Q 039334 721 NDFPKLDLLDISNTGIR--EIPDEILELSR 748 (782)
Q Consensus 721 ~~l~~L~~L~l~~~~l~--~lp~~~~~l~~ 748 (782)
..+++|+.|++++|++. .+|..+..++.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 55666666666666655 44444444333
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=9.4e-17 Score=164.01 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=143.9
Q ss_pred CCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccC
Q 039334 418 PKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSR 496 (782)
Q Consensus 418 ~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~ 496 (782)
...+.++++++.+..+|..-.+.|+.|++++|.+...++ .+.++++|++|++++|. +..+|..+|..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCC
Confidence 356677777777777766555678888888888776664 68888888888888874 7778877778888888888888
Q ss_pred CCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc
Q 039334 497 CPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 497 ~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. +.......+..+++|+.|++++|.+..++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888775 67888888888888876554443 5777888888887776 44555555677788888888887777765
Q ss_pred C--cCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCCCC
Q 039334 574 K--FTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 574 ~--~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~ 615 (782)
. +..+++|+.|++++|......+. +..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3 66677777777777655444332 666777777777777654
No 71
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=5.4e-20 Score=211.08 Aligned_cols=360 Identities=16% Similarity=0.089 Sum_probs=209.3
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCC-ceEEEecCCCCCC---CCcc--CCCCccEEEEecCCCCCCC-----cccc
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPK-LQVLAIFKPTFKS---LMSS--SFERLTVLVLRNCDMLEDI-----TGIK 459 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~---~~~~--~l~~L~~L~L~~~~~~~~~-----~~l~ 459 (782)
..++++.|.++++.+.......+...++. |++|++.+|.... +... .+++|++|+|++|.+.... ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45678888888876654433333332344 8888888775211 1111 6788888888888654331 1245
Q ss_pred CCCCCcEEEeecCCCCCCCc----hHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCC----CCCCCccC
Q 039334 460 ELKTLSVLEISGASSLKSNP----DELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCL----EYMPSLKE 530 (782)
Q Consensus 460 ~l~~L~~L~L~~~~~~~~lp----~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~----~~~~~~~~ 530 (782)
.+++|++|++++|. +..+. ..++..+++|++|++++|.+..+|. +..+++|++|+++.+... .....+..
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 67888888888775 43222 2223667888888888888777777 777888888888753322 11223567
Q ss_pred CCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc---CcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCE
Q 039334 531 LHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP---KFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKI 606 (782)
Q Consensus 531 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~---~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~ 606 (782)
+++|+.+++.++. ....+..+..+++|+.|++++|.+.... .+..+++|+.|++.++.....++. ...+++|+.
T Consensus 269 ~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 7788888777643 2223445566778888888887754211 246677888888774322122222 245677888
Q ss_pred EEccc-----------CCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC--cCC-CCCCCCEEEee----cC
Q 039334 607 LDLSE-----------VGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP--LTT-ALKNLELLDLS----NT 668 (782)
Q Consensus 607 L~l~~-----------~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~--~~~-~l~~L~~L~L~----~~ 668 (782)
|++++ +.++..+...+. ...++|++|++..+ .++... .+. .+++|+.|+++ .|
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~--------~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALA--------QGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHH--------HHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred EEeecCccccccccccCccCHHHHHHHH--------hhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 88872 333321111100 01237777777433 333211 122 36777888776 34
Q ss_pred CCcccc---------ccccccceeecccccc-CCCC--CC-CCCCCcccEEecccCCCCCC--CCC-CCCCCCcCEEecc
Q 039334 669 NLKKLP---------SELCNLRKLLLNNCLS-LTKL--PE-MKGLEKLEELRLSGCINLTE--LPN-LNDFPKLDLLDIS 732 (782)
Q Consensus 669 ~l~~l~---------~~l~~L~~L~L~~~~~-l~~l--~~-~~~l~~L~~L~l~~c~~l~~--l~~-~~~l~~L~~L~l~ 732 (782)
.++..| ..+++|++|+++.|.. ++.. .. ...+++|+.|++++| .++. ++. +..+++|+.|+++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEE
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeecc
Confidence 555432 1467788888765542 1111 11 124677888888777 3433 222 4667788888888
Q ss_pred CCCCC--CCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 733 NTGIR--EIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 733 ~~~l~--~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
+|+++ .++.....+ +.|+.|++++|+++...
T Consensus 497 ~n~l~~~~~~~~~~~l---~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKL---PSLRYLWVQGYRASMTG 529 (592)
T ss_dssp SCCCBHHHHHHHHHHC---SSCCEEEEESCBCCTTC
T ss_pred CCCCcHHHHHHHHHhc---CccCeeECcCCcCCHHH
Confidence 88765 234333333 44557778888777653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=6.2e-18 Score=187.69 Aligned_cols=210 Identities=15% Similarity=0.115 Sum_probs=145.3
Q ss_pred CCCCcEEEccCCCCCCCCC-CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEe
Q 039334 508 LTKLRFLILRQCSCLEYMP-SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILL 586 (782)
Q Consensus 508 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l 586 (782)
+++|+.|++++|.+....| .+..+++|+.|++++| .+...+.+..+++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-------------------------~l~~~~~l~~l~~L~~L~L 87 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-------------------------VLYETLDLESLSTLRTLDL 87 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-------------------------CCEEEEECTTCTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-------------------------CCCCCcccccCCCCCEEEe
Confidence 3466666666665444332 2455555555555554 4443333444555555555
Q ss_pred cCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCCCCCEEEe
Q 039334 587 RGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALKNLELLDL 665 (782)
Q Consensus 587 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L 665 (782)
++|.... +...++|+.|++++|.+++.....+ ++|+.|++++|......|. +..+++|+.|++
T Consensus 88 s~N~l~~----l~~~~~L~~L~L~~N~l~~~~~~~l------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 88 NNNYVQE----LLVGPSIETLHAANNNISRVSCSRG------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp CSSEEEE----EEECTTCCEEECCSSCCCCEEECCC------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred cCCcCCC----CCCCCCcCEEECcCCcCCCCCcccc------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 5543221 1122677777777777766554322 2788888888754444443 667899999999
Q ss_pred ecCCCccccc-----cccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCCCC
Q 039334 666 SNTNLKKLPS-----ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIREI 739 (782)
Q Consensus 666 ~~~~l~~l~~-----~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~l 739 (782)
++|.++.++. .+++|+.|+|++| .++.++....+++|+.|++++| .++.+|. +..+++|+.|++++|.++.+
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSCCCEE
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCcCccc
Confidence 9999986433 4689999999999 4666777777999999999998 6777776 88899999999999999999
Q ss_pred ChhhhCCCCCCcccEEeCCCCCCC
Q 039334 740 PDEILELSRPKIIREVDEETNQAE 763 (782)
Q Consensus 740 p~~~~~l~~L~~L~~l~~~~n~~~ 763 (782)
|..+. .++.|+.+++++|.+.
T Consensus 230 p~~l~---~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALR---FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCC---CCTTCCEEECTTCCBC
T ss_pred chhhc---cCCCCCEEEcCCCCCc
Confidence 88754 4566678999999998
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.7e-18 Score=180.97 Aligned_cols=239 Identities=21% Similarity=0.269 Sum_probs=123.0
Q ss_pred cCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCC--CCC-CC-------CCCCCcEEEccCCCCCCCCCC-
Q 039334 459 KELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKS--LPS-LP-------KLTKLRFLILRQCSCLEYMPS- 527 (782)
Q Consensus 459 ~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~--lp~-l~-------~l~~L~~L~l~~~~~~~~~~~- 527 (782)
+..++|++|++++|. + .+|..+... |++|++++|.++. +|. +. .+++|++|++++|.+.+.+|.
T Consensus 40 ~~~~~L~~l~l~~n~-l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDT-E-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCT-T-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeecccc-c-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 344555556666554 3 555554221 5555666555532 333 32 456666666666655444443
Q ss_pred c--cCCCcccEEEccCCCCCCcccccccCCC-----CCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCC---C
Q 039334 528 L--KELHELEIIDLSGATSLSSFQQLDFSSH-----TNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHI---L 595 (782)
Q Consensus 528 ~--~~l~~L~~L~l~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~---~ 595 (782)
+ ..+++|+.|++++|. +... +..+..+ ++|++|++++|.+..++ .++.+++|+.|++++|...+. +
T Consensus 115 ~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 2 555556666665554 2222 2233333 66677777766666554 455666666666666654322 1
Q ss_pred CC--CCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccc
Q 039334 596 PS--FQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKL 673 (782)
Q Consensus 596 ~~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l 673 (782)
+. +..+++|+.|++++|.++.++..... .+..+++|+.|++++|.++..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----------------------------~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSA-----------------------------LAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHH-----------------------------HHHTTCCCSEEECTTSCCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHH-----------------------------HHhcCCCCCEEECCCCcCCcc
Confidence 12 25667777777777766543321100 011233444444444444432
Q ss_pred cc-----cccccceeeccccccCCCCCC-CCCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCC
Q 039334 674 PS-----ELCNLRKLLLNNCLSLTKLPE-MKGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 674 ~~-----~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~ 737 (782)
++ .+++|++|++++| .++.+|. +. ++|++|++++| .++.+|.+..+++|+.|++++|+++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred cchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCCC
Confidence 21 2345555555555 2334442 22 56666666666 5555555666666666777666654
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.1e-18 Score=182.39 Aligned_cols=243 Identities=18% Similarity=0.213 Sum_probs=161.7
Q ss_pred HhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCC-CCCCC-cc-------CCCcccEEEccCCCCCCccccc
Q 039334 482 LFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCL-EYMPS-LK-------ELHELEIIDLSGATSLSSFQQL 551 (782)
Q Consensus 482 ~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~-~~~~~-~~-------~l~~L~~L~l~~~~~~~~~~~~ 551 (782)
+++.+.+|++|++++|.+ .+|. +... |+.|++++|.+. ..++. +. .+++|+.|++++|. +....+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHH
Confidence 346678899999999988 7787 5443 888888877652 22332 22 56777777777766 3322233
Q ss_pred cc--CCCCCccEEEccCCCCCCCcC-cCCC-----CcccEEEecCcCCCCCCC-CCCCCCCCCEEEcccCCCCCcccccc
Q 039334 552 DF--SSHTNLQMVDLSYTQIPWLPK-FTDL-----KHLSRILLRGCRKLHILP-SFQKLHSLKILDLSEVGFSNFTEIKL 622 (782)
Q Consensus 552 ~l--~~l~~L~~L~l~~~~~~~l~~-~~~l-----~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~ 622 (782)
.+ ..+++|+.|++++|.+..+|. +..+ ++|+.|++++|......+ .+..+++|+.|++++|.+.+...
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--- 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH---
T ss_pred HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH---
Confidence 33 566777777777776665542 2222 455555555554433332 34455555555555444321100
Q ss_pred CCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc-------cccccceeeccccccCCC
Q 039334 623 KDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS-------ELCNLRKLLLNNCLSLTK 693 (782)
Q Consensus 623 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~-------~l~~L~~L~L~~~~~l~~ 693 (782)
..+. +..+++|+.|++++|.++.++. .+++|++|++++|.....
T Consensus 191 ---------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 191 ---------------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp ---------------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred ---------------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 0111 2567899999999999985443 458999999999954443
Q ss_pred C--CCCCCCCcccEEecccCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCC
Q 039334 694 L--PEMKGLEKLEELRLSGCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 694 l--~~~~~l~~L~~L~l~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
. +.+..+++|++|++++| .++.+|. +. ++|+.|++++|+|+.+|. +..++.|+.|++++|++++.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~----~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRLDRNPS----PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCCCSCCC----TTTSCEEEEEECTTCTTTCC
T ss_pred cchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCCCCCChh----HhhCCCCCEEeccCCCCCCC
Confidence 4 24667899999999998 6788887 54 899999999999998875 45677888999999999875
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.5e-17 Score=169.62 Aligned_cols=193 Identities=18% Similarity=0.326 Sum_probs=148.8
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+++|+.|++.++.+..++.. .+++|++|++++|.+...++ +..+++|++|++++|. +..++. +..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchh--hcCCCCCCEEECC
Confidence 56777888887777766544 77888888888888776666 8888888888888885 666663 4788888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 496 RCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 496 ~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+|.++.+|.+..+++|++|++++|.+. .++.+..+++|+.|++++|. +....+ +..+++|+.|++++|.+..++.+
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l 191 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDISPL 191 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccC-cCccccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcChhh
Confidence 888888777778888888888888654 34557888888888888876 344332 77888888888888888888778
Q ss_pred CCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcc
Q 039334 576 TDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFT 618 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 618 (782)
..+++|+.|++++|..... +.+..+++|+.|++++|.++..+
T Consensus 192 ~~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GGCTTCCEEECTTSCCCBC-GGGTTCTTCCEEEEEEEEEECCC
T ss_pred cCCCCCCEEEccCCccCcc-ccccCCCCCCEEEccCCeeecCC
Confidence 8888888888888765433 35778888888888888776543
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=6.3e-17 Score=171.99 Aligned_cols=214 Identities=26% Similarity=0.318 Sum_probs=144.9
Q ss_pred CCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEccCCCCCCcccccccCCCCCccEE
Q 039334 487 AQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMV 562 (782)
Q Consensus 487 ~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 562 (782)
+++++|++++|.++.+|. +.++++|++|++++|.+.+.++. +..+++|..+....+..+..+.+..|..+++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 344444455444444443 44445555555554444333332 34444444332222222444445566777778888
Q ss_pred EccCCCCCCCcC--cCCCCcccEEEecCcCCCCCCC--CCCCCC-CCCEEEcccCCCCCccccccCCCCCCCCCCCCCCc
Q 039334 563 DLSYTQIPWLPK--FTDLKHLSRILLRGCRKLHILP--SFQKLH-SLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSL 637 (782)
Q Consensus 563 ~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~--~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L 637 (782)
++++|.+..++. +....++..+.+.++.....++ .+..+. .++.|++++|.++.++...+.. .+|
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~----------~~L 179 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG----------TQL 179 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT----------EEE
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc----------cch
Confidence 888777777664 3334556677777665554443 255554 5889999999998776544331 278
Q ss_pred cEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc-cccccceeeccccccCCCCCCCCCCCcccEEeccc
Q 039334 638 SELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS-ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSG 710 (782)
Q Consensus 638 ~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~-~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~ 710 (782)
++|.+.++..++.+|. +..+++|+.|++++|.++.+|. .+.+|++|.+.++..++.+|.+..+++|+.+++.+
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9999998888888886 6889999999999999999998 68999999999998999999999999999999975
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=3.5e-17 Score=170.42 Aligned_cols=197 Identities=21% Similarity=0.339 Sum_probs=122.1
Q ss_pred ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCCCCCCCCCCCCCCEE
Q 039334 528 LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLHILPSFQKLHSLKIL 607 (782)
Q Consensus 528 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 607 (782)
...+++|+.|+++++. +... ..+..+++|+.|++++|.+..++.+..+++|+.|++++|.. ..++.+..+++|+.|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l--~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL-KNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCC-ccCc--hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC-CCchhhcCCCCCCEE
Confidence 4556677777777765 2332 24566777777777777777776677777777777777653 334566677777777
Q ss_pred EcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc--cccccceeec
Q 039334 608 DLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS--ELCNLRKLLL 685 (782)
Q Consensus 608 ~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~--~l~~L~~L~L 685 (782)
++++|.++.+.. +.. .++|+.|++++| .+..++.+..+++|+.|++++|.++.++. .+++|+.|++
T Consensus 113 ~l~~n~l~~~~~--l~~---------l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 113 DLTSTQITDVTP--LAG---------LSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp ECTTSCCCCCGG--GTT---------CTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred ECCCCCCCCchh--hcC---------CCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence 777777665432 111 126666666666 34444445566666666666666665554 5566666666
Q ss_pred cccccCCCCCCCCCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCCCCCCChh
Q 039334 686 NNCLSLTKLPEMKGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTGIREIPDE 742 (782)
Q Consensus 686 ~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~l~~lp~~ 742 (782)
++| .++.++.+..+++|+.|++++| .++.++.+..+++|+.|++++|+++..|..
T Consensus 181 ~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 181 DDN-KISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CCC-ccCcChhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCeeecCCee
Confidence 666 3445555566666666666666 455555555666666666666666555443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.3e-16 Score=162.58 Aligned_cols=198 Identities=20% Similarity=0.193 Sum_probs=150.8
Q ss_pred hcCCCCceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEE
Q 039334 414 FNLMPKLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSL 492 (782)
Q Consensus 414 ~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L 492 (782)
+.++++++.+++.++.+..+|....+.++.|++++|.+.... ..+..+++|++|++++|. +..++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--CCCCcCCEE
Confidence 345778888888888888877766678888888888877654 468888999999998884 7766663 678889999
Q ss_pred EccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC
Q 039334 493 NLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 493 ~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
++++|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC
Confidence 999998888888 88888899999988876554433 6788888888888876 45555566777888888888888887
Q ss_pred CCcC--cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCC
Q 039334 571 WLPK--FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 571 ~l~~--~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 615 (782)
.+|. +..+++|+.|++++|........+..+++|+.|++++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 7763 56677777787777766555555666677777777777664
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=2.2e-16 Score=167.82 Aligned_cols=234 Identities=16% Similarity=0.203 Sum_probs=177.4
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccE-EEccCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQS-LNLSRCP 498 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~-L~l~~~~ 498 (782)
++++..++++..+|..-.++++.|+|++|.+...++ .|.++++|++|+|++|...+.+|...|.++++|++ +.+..|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 456666677777666555678888888888877664 57888888888888886556677766778887765 5556677
Q ss_pred CCCCCC--CCCCCCCcEEEccCCCCCCCCCC--ccCCCcccEEEccCCCCCCcccccccCCCC-CccEEEccCCCCCCCc
Q 039334 499 MKSLPS--LPKLTKLRFLILRQCSCLEYMPS--LKELHELEIIDLSGATSLSSFQQLDFSSHT-NLQMVDLSYTQIPWLP 573 (782)
Q Consensus 499 l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~l~ 573 (782)
++.+|. +..+++|++|++++|.+.. ++. .....++..+++.++..+..+....+..+. .++.|++++|.+..++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred ccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 888754 7888888888888887543 343 345556777777765555555555565554 6888999999998876
Q ss_pred -CcCCCCcccEEEecCcCCCCCCCC--CCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCC
Q 039334 574 -KFTDLKHLSRILLRGCRKLHILPS--FQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEH 650 (782)
Q Consensus 574 -~~~~l~~L~~L~l~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 650 (782)
......+|+.+.+.+++..+.++. |..+++|+.|++++|.++.++...+. +|++|.+.++..++.
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~------------~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE------------NLKKLRARSTYNLKK 238 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT------------TCCEEECTTCTTCCC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc------------cchHhhhccCCCcCc
Confidence 344567899999988777777664 78999999999999999887654433 899999999989999
Q ss_pred CCcCCCCCCCCEEEeec
Q 039334 651 LPLTTALKNLELLDLSN 667 (782)
Q Consensus 651 l~~~~~l~~L~~L~L~~ 667 (782)
+|.+..+++|+.+++.+
T Consensus 239 lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 239 LPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCTTTCCSCCEEECSC
T ss_pred CCCchhCcChhhCcCCC
Confidence 99988899999999875
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2e-19 Score=206.25 Aligned_cols=339 Identities=15% Similarity=0.118 Sum_probs=233.4
Q ss_pred hHhcCCCCceEEEecCCCCCCCCcc----CCCC-ccEEEEecCCCCCC--C-ccccCCCCCcEEEeecCCCCCCC----c
Q 039334 412 TFFNLMPKLQVLAIFKPTFKSLMSS----SFER-LTVLVLRNCDMLED--I-TGIKELKTLSVLEISGASSLKSN----P 479 (782)
Q Consensus 412 ~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~-L~~L~L~~~~~~~~--~-~~l~~l~~L~~L~L~~~~~~~~l----p 479 (782)
.++..+++|++|+++++.+...... .++. |++|++++|..... . ....++++|++|++++|. +... .
T Consensus 106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l 184 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWL 184 (592)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHH
T ss_pred HHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHH
Confidence 3444789999999999976543222 2445 99999998862111 1 123478999999999985 3322 2
Q ss_pred hHHhcCCCCccEEEccCCCCCC-----CCC-CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCC-C-cccc
Q 039334 480 DELFDGMAQLQSLNLSRCPMKS-----LPS-LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSL-S-SFQQ 550 (782)
Q Consensus 480 ~~~~~~l~~L~~L~l~~~~l~~-----lp~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~-~~~~ 550 (782)
..++..+++|++|++++|.++. ++. +..+++|+.|++.+|.... ++. +..+++|+.|+++..... . ....
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence 2234779999999999998873 344 5688999999999987554 444 588899999999753221 1 1223
Q ss_pred cccCCCCCccEEEccCCCCCCCcC-cCCCCcccEEEecCcCCCC-CC-CCCCCCCCCCEEEcccCCCCCccccccCCCCC
Q 039334 551 LDFSSHTNLQMVDLSYTQIPWLPK-FTDLKHLSRILLRGCRKLH-IL-PSFQKLHSLKILDLSEVGFSNFTEIKLKDPST 627 (782)
Q Consensus 551 ~~l~~l~~L~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~-~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 627 (782)
..+..+++|+.++++++....++. +..+++|+.|++++|.... .+ ..+..+++|+.|+++ +.+.......+.
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---- 338 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA---- 338 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH----
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH----
Confidence 456788999999999876666664 5668999999999987321 12 125788999999998 333221111110
Q ss_pred CCCCCCCCCccEEEecC----------CCCCCCC--Cc-CCCCCCCCEEEeecCCCcc-----ccccccccceeeccc--
Q 039334 628 QQLPFLPCSLSELYLRK----------CSALEHL--PL-TTALKNLELLDLSNTNLKK-----LPSELCNLRKLLLNN-- 687 (782)
Q Consensus 628 ~~l~~~~~~L~~L~l~~----------~~~l~~l--~~-~~~l~~L~~L~L~~~~l~~-----l~~~l~~L~~L~L~~-- 687 (782)
...++|++|++++ |..++.. +. ...+++|+.|+++.+.++. +...+++|++|+++.
T Consensus 339 ----~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 339 ----QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp ----HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred ----HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 0123899999995 6555532 22 3458999999998888773 222588999999984
Q ss_pred -cccCCCCCC-------CCCCCcccEEecccCCC-CCCCC--C-CCCCCCcCEEeccCCCCC--CCChhhhCCCCCCccc
Q 039334 688 -CLSLTKLPE-------MKGLEKLEELRLSGCIN-LTELP--N-LNDFPKLDLLDISNTGIR--EIPDEILELSRPKIIR 753 (782)
Q Consensus 688 -~~~l~~l~~-------~~~l~~L~~L~l~~c~~-l~~l~--~-~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~ 753 (782)
|+.++..|. +.++++|+.|++++|.. ++... . ...+++|+.|++++|+++ .++..+. .++.|+
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~~~~L~ 491 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR---GCPNLQ 491 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT---CCTTCC
T ss_pred CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh---cCcccC
Confidence 445555431 45689999999988753 33211 1 235899999999999987 3444444 456677
Q ss_pred EEeCCCCCCCC
Q 039334 754 EVDEETNQAED 764 (782)
Q Consensus 754 ~l~~~~n~~~~ 764 (782)
.|++++|.+++
T Consensus 492 ~L~l~~n~l~~ 502 (592)
T 3ogk_B 492 KLEMRGCCFSE 502 (592)
T ss_dssp EEEEESCCCBH
T ss_pred eeeccCCCCcH
Confidence 89999999764
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.5e-16 Score=159.35 Aligned_cols=202 Identities=16% Similarity=0.220 Sum_probs=138.2
Q ss_pred CCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccC-CCCCCCCC--C
Q 039334 430 FKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSR-CPMKSLPS--L 505 (782)
Q Consensus 430 ~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~-~~l~~lp~--l 505 (782)
+..+|. -.+.|++|++++|.+...++ .+.++++|++|++++|..+..+++..|..+++|++|++++ |.++.+|. +
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 333443 33467777777777666554 5777888888888877446677765567788888888887 77777764 6
Q ss_pred CCCCCCcEEEccCCCCCCCCCCccCCCccc---EEEccCCCCCCcccccccCCCCCcc-EEEccCCCCCCCcC--cCCCC
Q 039334 506 PKLTKLRFLILRQCSCLEYMPSLKELHELE---IIDLSGATSLSSFQQLDFSSHTNLQ-MVDLSYTQIPWLPK--FTDLK 579 (782)
Q Consensus 506 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~l~~--~~~l~ 579 (782)
..+++|++|++++|.+.. +|.+..+++|+ .|++++|..+....+..+..+++|+ .|++++|.+..+|. +.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 677888888888776443 56566666666 8888877335666666677888888 88888888876662 333 6
Q ss_pred cccEEEecCcC-CCCCCC-CCCCC-CCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCC
Q 039334 580 HLSRILLRGCR-KLHILP-SFQKL-HSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCS 646 (782)
Q Consensus 580 ~L~~L~l~~~~-~~~~~~-~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 646 (782)
+|+.|++++|. .....+ .+..+ ++|+.|++++|.++.++...+. +|+.|.+.++.
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~------------~L~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE------------HLKELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT------------TCSEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc------------cCceeeccCcc
Confidence 78888888875 333322 36777 8888888888877765543222 67777776653
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=2.4e-16 Score=161.60 Aligned_cols=214 Identities=21% Similarity=0.215 Sum_probs=117.8
Q ss_pred cCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC
Q 039334 426 FKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS 504 (782)
Q Consensus 426 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~ 504 (782)
.+..+..+|..-.+.|++|++++|.+...++ .+.++++|++|++++|. +..++...+..+++|++|++++|.++.++.
T Consensus 15 ~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 15 MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred cCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 3334444444333456677776666655543 56667777777777763 555555445667777777777777766553
Q ss_pred --CCCCCCCcEEEccCCCCCCCCC-CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCC
Q 039334 505 --LPKLTKLRFLILRQCSCLEYMP-SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLK 579 (782)
Q Consensus 505 --l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~ 579 (782)
+..+++|++|++++|.+....+ .+..+++|+.|++++|.......+..+..+++|+.|++++|.+..++ .+..++
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 6667777777777665443322 24555556666555554221112334455555555555555544332 111111
Q ss_pred cccEEEecCcCCCCCCCCCCCCCCCC-EEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCC
Q 039334 580 HLSRILLRGCRKLHILPSFQKLHSLK-ILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTA 656 (782)
Q Consensus 580 ~L~~L~l~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~ 656 (782)
.++.|. .|++++|.++.+....+.. .+|+.|++++|. +..+|. +..
T Consensus 174 --------------------~L~~l~l~L~ls~n~l~~~~~~~~~~----------~~L~~L~L~~n~-l~~~~~~~~~~ 222 (276)
T 2z62_A 174 --------------------QMPLLNLSLDLSLNPMNFIQPGAFKE----------IRLKELALDTNQ-LKSVPDGIFDR 222 (276)
T ss_dssp --------------------TCTTCCEEEECCSSCCCEECTTSSCS----------CCEEEEECCSSC-CSCCCTTTTTT
T ss_pred --------------------hccccceeeecCCCcccccCccccCC----------CcccEEECCCCc-eeecCHhHhcc
Confidence 222222 5666666655443322211 156677777664 444443 466
Q ss_pred CCCCCEEEeecCCCc
Q 039334 657 LKNLELLDLSNTNLK 671 (782)
Q Consensus 657 l~~L~~L~L~~~~l~ 671 (782)
+++|+.|++++|.+.
T Consensus 223 l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 223 LTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSCCEEECCSSCBC
T ss_pred cccccEEEccCCccc
Confidence 778888888887765
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.2e-15 Score=155.72 Aligned_cols=173 Identities=23% Similarity=0.319 Sum_probs=114.6
Q ss_pred CCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEc
Q 039334 439 ERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLIL 516 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l 516 (782)
..++.++++++.+...+..+. ++|++|++++|. +..++...|..+++|++|++++|.++.+|. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 457788888888777665554 678888888885 777776556888888888888888888876 577888888888
Q ss_pred cCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC--cCCCCcccEEEecCcCCCC
Q 039334 517 RQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK--FTDLKHLSRILLRGCRKLH 593 (782)
Q Consensus 517 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~ 593 (782)
++|.+....+. +..+++|+.|+++++. +....+..+..+++|+.|++++|.+..++. +..+++|+.|++++|....
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 88875543333 4667777777777665 444444556666677777777666665552 4555555555555554333
Q ss_pred CCCC-CCCCCCCCEEEcccCCCC
Q 039334 594 ILPS-FQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 594 ~~~~-l~~l~~L~~L~l~~~~l~ 615 (782)
..+. +..+++|+.|++++|.++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCS
T ss_pred eChhHhccCCCcCEEECCCCcCC
Confidence 3322 445555555555555444
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.7e-16 Score=158.86 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=118.7
Q ss_pred CCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC-CCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEc
Q 039334 463 TLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP-MKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDL 539 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~-l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 539 (782)
+|++|++++|. +..+|...|..+++|++|++++|. ++.+|. +..+++|++|++++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~-------------------- 90 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-------------------- 90 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE--------------------
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC--------------------
Confidence 55555555553 444444334555555555555554 555443 444555555555541
Q ss_pred cCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCccc---EEEecCc-CCCCCCC-CCCCCCCCC-EEEcccCC
Q 039334 540 SGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLS---RILLRGC-RKLHILP-SFQKLHSLK-ILDLSEVG 613 (782)
Q Consensus 540 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~---~L~l~~~-~~~~~~~-~l~~l~~L~-~L~l~~~~ 613 (782)
+. +....+..+..+++|+.|++++|.+..+|.+..+++|+ .|++++| ......+ .+..+++|+ .|++++|.
T Consensus 91 --n~-l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 91 --RN-LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp --TT-CCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred --CC-eeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 22 33333445566777777777777777777777777777 8888887 3333333 377888888 88888888
Q ss_pred CCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCC-CCCCEEEeecCCCccccc-cccccceeeccccc
Q 039334 614 FSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTAL-KNLELLDLSNTNLKKLPS-ELCNLRKLLLNNCL 689 (782)
Q Consensus 614 l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l-~~L~~L~L~~~~l~~l~~-~l~~L~~L~L~~~~ 689 (782)
++.++...+.. .+|++|++++|+.+..++. +..+ ++|+.|++++|.++.+|. .+++|+.|.+.++.
T Consensus 168 l~~i~~~~~~~----------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 168 FTSVQGYAFNG----------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CCEECTTTTTT----------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred CcccCHhhcCC----------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 77555432221 2678888887754555543 5566 778888888777777766 57777777776654
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=3.1e-16 Score=160.26 Aligned_cols=191 Identities=25% Similarity=0.326 Sum_probs=116.3
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+++|+.|.+.++.+..++.. .+++|++|++++|.+.. ++.+..+++|++|++++|. +..++...+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECC
Confidence 45666666666666555433 56667777777666554 3456677777777777763 556665555667777777777
Q ss_pred CCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC
Q 039334 496 RCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 496 ~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 572 (782)
+|.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+..+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 777766665 56677777777777654433333 3566666666666665 3444444456666677777776666665
Q ss_pred cC--cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCC
Q 039334 573 PK--FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSN 616 (782)
Q Consensus 573 ~~--~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 616 (782)
+. +..+++|+.|++++|... +.+++|+.|++..|.+++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGG
T ss_pred CHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCC
Confidence 52 555666666666665322 234455555555554443
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=2.1e-15 Score=155.39 Aligned_cols=174 Identities=20% Similarity=0.172 Sum_probs=113.4
Q ss_pred CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEc
Q 039334 437 SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLIL 516 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l 516 (782)
.+++++.++++++.+...+..+. +++++|++++|. +..++...+..+++|++|++++|.++.++....+++|+.|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 56778888888887777666553 678888888875 666665556788888888888888877776667788888888
Q ss_pred cCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC--cCCCCcccEEEecCcCCCC
Q 039334 517 RQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK--FTDLKHLSRILLRGCRKLH 593 (782)
Q Consensus 517 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~ 593 (782)
++|.+. .+|. +..+++|+.|++++|. +....+..|..+++|+.|++++|.+..++. +..+++|+.|++++|....
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 887654 3443 5667777777777665 444444556666667777776666665552 4455555555555554433
Q ss_pred CCCC-CCCCCCCCEEEcccCCCC
Q 039334 594 ILPS-FQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 594 ~~~~-l~~l~~L~~L~l~~~~l~ 615 (782)
..+. +..+++|+.|++++|.++
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC
Confidence 3222 344555555555555444
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=7.7e-16 Score=157.85 Aligned_cols=196 Identities=23% Similarity=0.219 Sum_probs=123.6
Q ss_pred CCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEc
Q 039334 462 KTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDL 539 (782)
Q Consensus 462 ~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 539 (782)
++|++|++++|. +..++...+..+++|++|++++|.++.++. +..+++|++|++++|.+....
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 92 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-------------- 92 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--------------
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC--------------
Confidence 456677776663 555555334666677777777766666554 566666666666666543322
Q ss_pred cCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCC--CCCCCCCCCCCCEEEcccCCCC
Q 039334 540 SGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLH--ILPSFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 540 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~ 615 (782)
+..+..+++|+.|++++|.+..++ .+..+++|+.|++++|.... ....+..+++|+.|++++|.++
T Consensus 93 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 93 ----------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ----------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ----------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 233444555555555555555443 25556666666666655433 2234777888889999888887
Q ss_pred CccccccCCCCCCCCCCCCCCcc----EEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc----cccccceeeccc
Q 039334 616 NFTEIKLKDPSTQQLPFLPCSLS----ELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNN 687 (782)
Q Consensus 616 ~~~~~~~~~~~~~~l~~~~~~L~----~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~ 687 (782)
++....+... + +|+ +|++++|......+......+|+.|++++|.++.+|. .+++|++|++++
T Consensus 163 ~~~~~~~~~l-----~----~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 163 SIYCTDLRVL-----H----QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECGGGGHHH-----H----TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cCCHHHhhhh-----h----hccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 6654333211 0 333 8999988543333334455689999999999998876 578999999998
Q ss_pred cccC
Q 039334 688 CLSL 691 (782)
Q Consensus 688 ~~~l 691 (782)
|+..
T Consensus 234 N~~~ 237 (276)
T 2z62_A 234 NPWD 237 (276)
T ss_dssp SCBC
T ss_pred Cccc
Confidence 8643
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=7.6e-16 Score=157.39 Aligned_cols=185 Identities=25% Similarity=0.388 Sum_probs=126.3
Q ss_pred EecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCC
Q 039334 424 AIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL 502 (782)
Q Consensus 424 ~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l 502 (782)
.+..+.+...... .+++|+.|++.++.+. .++.+..+++|++|++++|. +..++ . +..+++|++|++++|.++.+
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNK-LHDIS-A-LKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSC-CCCCG-G-GTTCTTCCEEECTTSCCCCC
T ss_pred HhcCcccccccccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCC-CCCch-h-hcCCCCCCEEECCCCccCcc
Confidence 3333444333333 7889999999988765 34568889999999999885 66665 3 48899999999999998888
Q ss_pred CC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC--cCC
Q 039334 503 PS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK--FTD 577 (782)
Q Consensus 503 p~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--~~~ 577 (782)
|. +..+++|++|++++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+..++. +..
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 76 78889999999998876554444 5777777788777775 445555556667777777777777666553 455
Q ss_pred CCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccCC
Q 039334 578 LKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEVG 613 (782)
Q Consensus 578 l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~ 613 (782)
+++|+.|++++|......+. +..+++|+.|++++|.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 66666666666554433332 4555555555555544
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=2e-19 Score=206.42 Aligned_cols=332 Identities=19% Similarity=0.160 Sum_probs=188.5
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCC-CCCC--CCcc--CCCCccEEEEecCCCCCCC----c-cccC
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKP-TFKS--LMSS--SFERLTVLVLRNCDMLEDI----T-GIKE 460 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~--~l~~L~~L~L~~~~~~~~~----~-~l~~ 460 (782)
..++++.|.++++.+....+..+...+++|++|++.+| .+.. ++.. .+++|++|++++|.+.... . ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45678888888887665555555545788888888887 3332 1111 6788888888888754422 1 2336
Q ss_pred CCCCcEEEeecCCCCCCCch----HHhcCCCCccEEEccCC-CCCCCCC-CCCCCCCcEEEccCCCC-------------
Q 039334 461 LKTLSVLEISGASSLKSNPD----ELFDGMAQLQSLNLSRC-PMKSLPS-LPKLTKLRFLILRQCSC------------- 521 (782)
Q Consensus 461 l~~L~~L~L~~~~~~~~lp~----~~~~~l~~L~~L~l~~~-~l~~lp~-l~~l~~L~~L~l~~~~~------------- 521 (782)
+++|++|++++|. ..++. .+...+++|++|++++| .+..+|. +..+++|++|++..+..
T Consensus 183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 7788888888874 22322 22345688888888887 4445666 66777788887654421
Q ss_pred -----------------CCCCCCc-cCCCcccEEEccCCCCCCccc-ccccCCCCCccEEEccCCCCCC--CcC-cCCCC
Q 039334 522 -----------------LEYMPSL-KELHELEIIDLSGATSLSSFQ-QLDFSSHTNLQMVDLSYTQIPW--LPK-FTDLK 579 (782)
Q Consensus 522 -----------------~~~~~~~-~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~--l~~-~~~l~ 579 (782)
...++.+ ..+++|+.|++++|. +.... ...+..+++|+.|++++| +.. ++. ...++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 0111111 245666666666665 33211 122345666666666655 211 111 12356
Q ss_pred cccEEEecCc--------CCCCC--CCCC-CCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEec-----
Q 039334 580 HLSRILLRGC--------RKLHI--LPSF-QKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLR----- 643 (782)
Q Consensus 580 ~L~~L~l~~~--------~~~~~--~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~----- 643 (782)
+|+.|++.+| ...+. +..+ ..+++|+.|.+..+.++......+. ...++|+.|++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~--------~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA--------RNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH--------HHCTTCCEEEEEESSTT
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH--------hhCCCcceeEeecccCC
Confidence 6666666432 11110 0111 1356677776666655433221111 001277888887
Q ss_pred CCCCCCCCCc-------CCCCCCCCEEEeecCCCccc-----cccccccceeeccccccCCCC--CCC-CCCCcccEEec
Q 039334 644 KCSALEHLPL-------TTALKNLELLDLSNTNLKKL-----PSELCNLRKLLLNNCLSLTKL--PEM-KGLEKLEELRL 708 (782)
Q Consensus 644 ~~~~l~~l~~-------~~~l~~L~~L~L~~~~l~~l-----~~~l~~L~~L~L~~~~~l~~l--~~~-~~l~~L~~L~l 708 (782)
+|..++..|. +..+++|+.|++++ .++.. ...+++|+.|++++|. ++.. ..+ .++++|++|+|
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEEC
Confidence 4555554432 34567788888866 44421 1136778888887774 2221 112 45778888888
Q ss_pred ccCCCCCCCC--C-CCCCCCcCEEeccCCCCC
Q 039334 709 SGCINLTELP--N-LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 709 ~~c~~l~~l~--~-~~~l~~L~~L~l~~~~l~ 737 (782)
++|+. +..+ . ...+++|+.|++++|+++
T Consensus 489 ~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 489 RDCPF-GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp ESCSC-CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 88853 3221 1 345778888888888763
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=8.8e-16 Score=160.22 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=78.3
Q ss_pred CCCceEEEecCCCCCCCC-----cc-CCCCccEEEEecCCCCCCC-ccc--cCCCCCcEEEeecCCCCCCCc---hHHhc
Q 039334 417 MPKLQVLAIFKPTFKSLM-----SS-SFERLTVLVLRNCDMLEDI-TGI--KELKTLSVLEISGASSLKSNP---DELFD 484 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~-----~~-~l~~L~~L~L~~~~~~~~~-~~l--~~l~~L~~L~L~~~~~~~~lp---~~~~~ 484 (782)
...++.+.+.++.+.... .. .+++|++|++++|.+.... ..+ ..+++|++|++++|......+ ...+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 345677777776653211 11 4466888888888776554 344 778888888888875333322 12234
Q ss_pred CCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCC--CC-C--ccCCCcccEEEccCCC
Q 039334 485 GMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEY--MP-S--LKELHELEIIDLSGAT 543 (782)
Q Consensus 485 ~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~--~~-~--~~~l~~L~~L~l~~~~ 543 (782)
.+++|++|++++|.+..++. +..+++|++|++++|.+.+. ++ . +..+++|+.|++++|.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 67888888888888777664 77788888888887764321 11 1 2445555555555544
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=1.9e-18 Score=198.31 Aligned_cols=331 Identities=17% Similarity=0.145 Sum_probs=190.4
Q ss_pred CCCceEEEccCC-CCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-------CCCCccEEEEecCCCCCCC-c----cc
Q 039334 392 LREVLTLLIDGS-RPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-------SFERLTVLVLRNCDMLEDI-T----GI 458 (782)
Q Consensus 392 ~~~l~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~l~~L~~L~L~~~~~~~~~-~----~l 458 (782)
.++++.|.++++ .+.......++..+++|++|++.+|.+...... .+++|+.|++++|. .... . .+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHH
Confidence 346666666665 222222333444566777777766654332111 45567777776664 1111 1 12
Q ss_pred cCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC-------------------------------CCCCCCC-CC
Q 039334 459 KELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC-------------------------------PMKSLPS-LP 506 (782)
Q Consensus 459 ~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~-------------------------------~l~~lp~-l~ 506 (782)
..+++|++|++++|..+..++..+ ..+++|++|+++.+ ....+|. +.
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 345667777776664344433332 55666666654433 1222344 34
Q ss_pred CCCCCcEEEccCCCCCCC-CCC-ccCCCcccEEEccCCCCCCccccc-ccCCCCCccEEEccCC---------CCCC--C
Q 039334 507 KLTKLRFLILRQCSCLEY-MPS-LKELHELEIIDLSGATSLSSFQQL-DFSSHTNLQMVDLSYT---------QIPW--L 572 (782)
Q Consensus 507 ~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~---------~~~~--l 572 (782)
.+++|++|++++|.+... ++. +..+++|+.|+++++. ...... ....+++|+.|++..+ .+.. +
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 679999999999983322 222 4688999999999872 221111 2235889999999542 2221 1
Q ss_pred cCc-CCCCcccEEEecCcCCCCC-CCCCC-CCCCCCEEEcc--c----CCCCCcccc-ccCCCCCCCCCCCCCCccEEEe
Q 039334 573 PKF-TDLKHLSRILLRGCRKLHI-LPSFQ-KLHSLKILDLS--E----VGFSNFTEI-KLKDPSTQQLPFLPCSLSELYL 642 (782)
Q Consensus 573 ~~~-~~l~~L~~L~l~~~~~~~~-~~~l~-~l~~L~~L~l~--~----~~l~~~~~~-~~~~~~~~~l~~~~~~L~~L~l 642 (782)
..+ ..+++|+.|.+..+..... +..+. .+++|+.|+++ + +.++..+.. .+. .+....++|+.|++
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~-----~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG-----AIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH-----HHHHHCTTCCEEEC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH-----HHHhhCCCccEEee
Confidence 122 2378999996655433211 12232 57899999999 3 444422110 000 00001238999999
Q ss_pred cCCCCCCCC--CcCC-CCCCCCEEEeecCCCccc-----cccccccceeeccccccCCCCC---CCCCCCcccEEecccC
Q 039334 643 RKCSALEHL--PLTT-ALKNLELLDLSNTNLKKL-----PSELCNLRKLLLNNCLSLTKLP---EMKGLEKLEELRLSGC 711 (782)
Q Consensus 643 ~~~~~l~~l--~~~~-~l~~L~~L~L~~~~l~~l-----~~~l~~L~~L~L~~~~~l~~l~---~~~~l~~L~~L~l~~c 711 (782)
++ .+... +.+. .+++|+.|++++|.++.. ...+++|++|++++|.. +... ....+++|+.|++++|
T Consensus 440 ~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 440 SG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESS
T ss_pred cC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCC
Confidence 76 23321 2232 378999999999988632 13589999999999965 3221 2456899999999999
Q ss_pred CCCCCCCC--C-CCCCCcCEEeccCCC
Q 039334 712 INLTELPN--L-NDFPKLDLLDISNTG 735 (782)
Q Consensus 712 ~~l~~l~~--~-~~l~~L~~L~l~~~~ 735 (782)
+. +.-.. + ..+|+|+...+..+.
T Consensus 517 ~~-~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 517 SV-SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CC-BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CC-CHHHHHHHHHhCCCCEEEEecCCC
Confidence 54 21111 2 457888777776654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=2.3e-14 Score=144.39 Aligned_cols=152 Identities=22% Similarity=0.248 Sum_probs=92.3
Q ss_pred CceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCC
Q 039334 419 KLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRC 497 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 497 (782)
..+.+++.++.+..+|..-.+.++.|++++|.+....+ .+.++++|++|++++|. +..+++..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCC
Confidence 45566777777766666545677777777777666553 56777777777777774 55566555577777777777777
Q ss_pred CCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCC
Q 039334 498 PMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 498 ~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l 572 (782)
.++.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+..+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 7777664 66777777777777754432222 3445555555555543 3333333344444455555544444433
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=7e-15 Score=151.58 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=86.9
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+++|+.|++.+|.+..++.. .+++|++|++++|.+...++ +..+++|++|++++|. +..++. +..+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECC
Confidence 45666666666666555433 55566666666655554444 5555666666665553 444443 3555666666666
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 496 RCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 496 ~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+|.++.++.+..+++|++|++++|.+.. ++.+..+++|+.|+ +++|.+..++.+
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~-------------------------L~~N~l~~~~~l 174 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLS-------------------------LEDNQISDIVPL 174 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEE-------------------------CCSSCCCCCGGG
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEE-------------------------ccCCccccchhh
Confidence 6555555445555555555555554322 23344444444444 444444444444
Q ss_pred CCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCC
Q 039334 576 TDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 615 (782)
..+++|+.|++++|.. +.++.+..+++|+.|++++|.+.
T Consensus 175 ~~l~~L~~L~L~~N~i-~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEEEEEEEEE
T ss_pred cCCCccCEEECCCCcC-CCChhhccCCCCCEEECcCCccc
Confidence 4444455555544422 22333455555555555555443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=3.5e-14 Score=143.16 Aligned_cols=174 Identities=22% Similarity=0.295 Sum_probs=134.7
Q ss_pred CCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEc
Q 039334 439 ERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLIL 516 (782)
Q Consensus 439 ~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l 516 (782)
...+.++++++.+...+..+. ++|++|++++|. +..++...+..+++|++|++++|.++.++. +..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 457788898888877776665 689999999985 666666556889999999999999888776 788999999999
Q ss_pred cCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCC
Q 039334 517 RQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLH 593 (782)
Q Consensus 517 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~ 593 (782)
++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+..++ .+..+++|+.|++++|....
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99876654444 5788888888888886 55555556777888888888888888776 37778888888888876655
Q ss_pred CCC-CCCCCCCCCEEEcccCCCCC
Q 039334 594 ILP-SFQKLHSLKILDLSEVGFSN 616 (782)
Q Consensus 594 ~~~-~l~~l~~L~~L~l~~~~l~~ 616 (782)
..+ .+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 444 46777888888888877654
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=8e-15 Score=152.95 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=82.1
Q ss_pred CCCCCCCEEEeecCCCccccc-------cccccceeeccccccCCCCC-CCCCC---CcccEEecccCCCCCCCCC-CCC
Q 039334 655 TALKNLELLDLSNTNLKKLPS-------ELCNLRKLLLNNCLSLTKLP-EMKGL---EKLEELRLSGCINLTELPN-LND 722 (782)
Q Consensus 655 ~~l~~L~~L~L~~~~l~~l~~-------~l~~L~~L~L~~~~~l~~l~-~~~~l---~~L~~L~l~~c~~l~~l~~-~~~ 722 (782)
..+++|+.|++++|.++.++. .+++|++|++++|......| .+..+ ++|++|++++| .++.+|. +.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc-
Confidence 467889999999998876654 45899999999985444434 34444 79999999998 7888887 53
Q ss_pred CCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCCC
Q 039334 723 FPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 723 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
++|+.|++++|+|+.+|. + ..++.|+.|++++|++++.
T Consensus 272 -~~L~~L~Ls~N~l~~~~~-~---~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRAPQ-P---DELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -SCCSCEECCSCCCCSCCC-T---TSCCCCSCEECSSTTTSCC
T ss_pred -CCCCEEECCCCcCCCCch-h---hhCCCccEEECcCCCCCCC
Confidence 899999999999998865 3 4566777889999999864
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=9.8e-15 Score=150.48 Aligned_cols=170 Identities=19% Similarity=0.273 Sum_probs=132.3
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEe
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEI 469 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 469 (782)
...+++.|.++++.+... + .+..+++|+.|++++|.+..+++. .+++|++|++++|.+.. ++.+..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~--~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccC-h--hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-ChhhccCCCCCEEEC
Confidence 456789999999987644 2 256799999999999999988765 89999999999998766 456999999999999
Q ss_pred ecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCccc
Q 039334 470 SGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQ 549 (782)
Q Consensus 470 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 549 (782)
++|. +..++. +..+++|++|++++|.++.++.+..+++|++|++++|.+.. ++.+..+++|+.|++++|. +...
T Consensus 120 ~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~L~~N~-i~~l- 193 (291)
T 1h6t_A 120 EHNG-ISDING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKNH-ISDL- 193 (291)
T ss_dssp TTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCBC-
T ss_pred CCCc-CCCChh--hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-chhhcCCCccCEEECCCCc-CCCC-
Confidence 9995 777753 48899999999999999998668999999999999997544 3336666777777776665 3332
Q ss_pred ccccCCCCCccEEEccCCCCCC
Q 039334 550 QLDFSSHTNLQMVDLSYTQIPW 571 (782)
Q Consensus 550 ~~~l~~l~~L~~L~l~~~~~~~ 571 (782)
..+..+++|+.|++++|.+..
T Consensus 194 -~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 -RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGGTTCTTCSEEEEEEEEEEC
T ss_pred -hhhccCCCCCEEECcCCcccC
Confidence 135556666666666555443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=6.8e-14 Score=156.35 Aligned_cols=177 Identities=27% Similarity=0.343 Sum_probs=87.0
Q ss_pred CccEEEccCCCCCCCcC-cCCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCC
Q 039334 558 NLQMVDLSYTQIPWLPK-FTDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCS 636 (782)
Q Consensus 558 ~L~~L~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 636 (782)
+|+.|++++|.+..+|. + +++|+.|++++|... .+| ..+++|+.|++++|.+++++. + +.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~--l-----------~~~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE--L-----------PAS 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC--C-----------CTT
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch--h-----------hcC
Confidence 44444544444444442 2 244555555544332 222 334455555555555544322 1 014
Q ss_pred ccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccccccccceeeccccccCCCCCCCCCCCcccEEecccCCCCCC
Q 039334 637 LSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPSELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCINLTE 716 (782)
Q Consensus 637 L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~~l~~ 716 (782)
|+.|++++|. +..+|. .+++|+.|++++|.++.+|..+++|++|++++| .++.+|.+. ++|+.|++++| .++.
T Consensus 122 L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~L~~lp~l~--~~L~~L~Ls~N-~L~~ 194 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTMLPE--LPALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTFLPELP--ESLEALDVSTN-LLES 194 (571)
T ss_dssp CCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCC--TTCCEEECCSS-CCSS
T ss_pred CCEEECCCCc-CCCCCC--cCccccEEeCCCCccCcCCCcCCCcCEEECCCC-CCCCcchhh--CCCCEEECcCC-CCCc
Confidence 5555555542 233443 455566666666666555555556666666655 344454422 56666666655 4555
Q ss_pred CCCCCCCCCc-------CEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCCC
Q 039334 717 LPNLNDFPKL-------DLLDISNTGIREIPDEILELSRPKIIREVDEETNQAED 764 (782)
Q Consensus 717 l~~~~~l~~L-------~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~~ 764 (782)
+|.+.. +| +.|++++|+|+.+|..+.+ ++.|+.|++++|.++.
T Consensus 195 lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~---l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 195 LPAVPV--RNHHSEETEIFFRCRENRITHIPENILS---LDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCCCC----------CCEEEECCSSCCCCCCGGGGG---SCTTEEEECCSSSCCH
T ss_pred hhhHHH--hhhcccccceEEecCCCcceecCHHHhc---CCCCCEEEeeCCcCCC
Confidence 554221 44 6666666666666655544 3334455666666654
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=2.6e-14 Score=161.66 Aligned_cols=167 Identities=21% Similarity=0.270 Sum_probs=93.1
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+++|+.|++.+|.+..++.. .+++|+.|+|++|.+...++ +..+++|++|+|++|. +..+|. +..+++|++|+++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSS--LKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTT--STTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChh--hccCCCCCEEEec
Confidence 55666666666666555443 55666666666665554444 5566666666666653 444442 3556666666666
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 496 RCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 496 ~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+|.+..++.+..+++|+.|++++|.+.. ++.+..+++|+.|++++|. +....+ +..+++|+.|++++|.+..++.+
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l 193 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISDLRAL 193 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCBCGGG
T ss_pred CCCCCCCccccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCCCChHH
Confidence 6666555445556666666666654332 3445555566666665554 222222 45555555555555555555555
Q ss_pred CCCCcccEEEecCcCC
Q 039334 576 TDLKHLSRILLRGCRK 591 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~ 591 (782)
..+++|+.|++++|..
T Consensus 194 ~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 194 AGLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCTTCSEEECCSEEE
T ss_pred ccCCCCCEEEccCCcC
Confidence 5555555555555443
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=6.1e-16 Score=163.67 Aligned_cols=246 Identities=20% Similarity=0.272 Sum_probs=134.0
Q ss_pred CCcEEEeecCCCCCCCchHHhcCC--CCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCC-CCC-ccCCCcccEE
Q 039334 463 TLSVLEISGASSLKSNPDELFDGM--AQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEY-MPS-LKELHELEII 537 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~lp~~~~~~l--~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L 537 (782)
.++.++++++. +. +.. +..+ ++++.|+++++.+...+. +..+++|++|++++|.+... ++. +..+++|+.|
T Consensus 48 ~~~~l~l~~~~-~~--~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKN-LH--PDV-TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCB-CC--HHH-HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeecccccc-CC--HHH-HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 36788888764 33 333 3666 888888888888777665 67788888888888764332 333 3566666666
Q ss_pred EccCCCCCCcccccccCCCCCccEEEccCC-CCCCCcCcCCCCcccEEEecCcCCCCCCCC-CCCCCCCCEEEcccC-CC
Q 039334 538 DLSGATSLSSFQQLDFSSHTNLQMVDLSYT-QIPWLPKFTDLKHLSRILLRGCRKLHILPS-FQKLHSLKILDLSEV-GF 614 (782)
Q Consensus 538 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~-l~~l~~L~~L~l~~~-~l 614 (782)
++++|. +....+..+..+++|++|++++| .+... .++. +..+++|+.|++++| .+
T Consensus 124 ~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------------~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 124 SLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------------ALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------HHHHHHHHCTTCCEEECCCCTTC
T ss_pred eCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------HHHHHHhcCCCCCEEcCCCCCCc
Confidence 666664 33333334444555555555544 22210 0111 333445555555544 33
Q ss_pred CCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc-CCCCC-CCCEEEeecCC--Cc--cccc---cccccceeec
Q 039334 615 SNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL-TTALK-NLELLDLSNTN--LK--KLPS---ELCNLRKLLL 685 (782)
Q Consensus 615 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~-~~~l~-~L~~L~L~~~~--l~--~l~~---~l~~L~~L~L 685 (782)
++.. ++. +..++ +|+.|++++|. ++ .++. .+++|++|++
T Consensus 182 ~~~~--------------------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 182 TEKH--------------------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp CHHH--------------------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred ChHH--------------------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 3210 111 22344 56666666652 22 2332 5667777777
Q ss_pred cccccCCC--CCCCCCCCcccEEecccCCCCCCCC--CCCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCC
Q 039334 686 NNCLSLTK--LPEMKGLEKLEELRLSGCINLTELP--NLNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQ 761 (782)
Q Consensus 686 ~~~~~l~~--l~~~~~l~~L~~L~l~~c~~l~~l~--~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~ 761 (782)
++|..++. ++.+..+++|+.|++++|..+.... .+..+++|+.|++++| ++. ..+..+. +.+..|++++|+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHH--HHSTTSEESCCC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHH--hhCcceEEeccc
Confidence 76653332 2345666777777777775333221 1556778888888877 321 1122221 123344567788
Q ss_pred CCCCcccccC
Q 039334 762 AEDVNRGRGG 771 (782)
Q Consensus 762 ~~~~~~~~~~ 771 (782)
++.+.+...+
T Consensus 305 l~~~~~~~~~ 314 (336)
T 2ast_B 305 FTTIARPTIG 314 (336)
T ss_dssp SCCTTCSSCS
T ss_pred CccccCCccc
Confidence 8776665444
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.6e-14 Score=161.66 Aligned_cols=172 Identities=20% Similarity=0.296 Sum_probs=128.1
Q ss_pred CCCCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEe
Q 039334 391 KLREVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEI 469 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L 469 (782)
...+++.|.++++.+... + .+..+++|+.|++++|.+..+++. .+++|+.|+|++|.+.. ++.+..+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~--~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q--GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T--TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCC-h--HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEe
Confidence 345677788887776543 2 255688888888888888777655 78888888888887765 446888888888888
Q ss_pred ecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCccc
Q 039334 470 SGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQ 549 (782)
Q Consensus 470 ~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 549 (782)
++|. +..++. +..|++|+.|++++|.++.++.+..+++|+.|++++|.+....| +..+++|+.|++++|. +...
T Consensus 117 s~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l- 190 (605)
T 1m9s_A 117 EHNG-ISDING--LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDL- 190 (605)
T ss_dssp TTSC-CCCCGG--GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBC-
T ss_pred cCCC-CCCCcc--ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCC-
Confidence 8885 666654 47788888888888888877557788888888888887655444 7888888888888876 3443
Q ss_pred ccccCCCCCccEEEccCCCCCCCc
Q 039334 550 QLDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 550 ~~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
..+..+++|+.|++++|.+...|
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEECCC
T ss_pred -hHHccCCCCCEEEccCCcCcCCc
Confidence 35777888888888888766544
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=1.3e-13 Score=154.21 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=128.9
Q ss_pred CceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC
Q 039334 419 KLQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 419 ~L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 498 (782)
+++.|++.+|.+..+|..-+++|++|++++|.+...+ ..+++|++|++++|. +..+|. + .. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l-~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-L-PA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-C-CT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-h-hc--CCCEEECCCCc
Confidence 7888888888887776655678888888888777544 557888888888874 666776 3 43 88888888888
Q ss_pred CCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCC
Q 039334 499 MKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDL 578 (782)
Q Consensus 499 l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l 578 (782)
++.+|. .+++|+.|++++|.+.. +|. .+++|+.|++++|. +..++. +. ++|+.|++++|.+..+|.+..
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~lp~~~~- 200 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESLPAVPV- 200 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSCCCCC--
T ss_pred CCCCCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCchhhHHH-
Confidence 888877 67788888888887543 555 56788888888876 344333 44 788888888888887776332
Q ss_pred Ccc-------cEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCCcc
Q 039334 579 KHL-------SRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSNFT 618 (782)
Q Consensus 579 ~~L-------~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 618 (782)
+| +.|++++|.....+..+..+++|+.|++++|.+++..
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 56 7788887765554444666788888888888776543
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=8.8e-16 Score=162.45 Aligned_cols=213 Identities=20% Similarity=0.226 Sum_probs=117.2
Q ss_pred ceEEEccCCCCCCCChhhHhcCC--CCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCC--CccccCCCCCcEEE
Q 039334 395 VLTLLIDGSRPCEEDHSTFFNLM--PKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLED--ITGIKELKTLSVLE 468 (782)
Q Consensus 395 l~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~--~~~l~~l~~L~~L~ 468 (782)
.+.++++++.+. ...+..+ ++++.|++.++.+...++. .+++|++|++++|.+... +..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 456777776554 2333334 6777777777766655444 567777777777665432 23456677777777
Q ss_pred eecCCCCCCCchHHhcCCCCccEEEccCC-CCCC--CCC-CCCCCCCcEEEccCC-CCCCC-CCC-ccCCC-cccEEEcc
Q 039334 469 ISGASSLKSNPDELFDGMAQLQSLNLSRC-PMKS--LPS-LPKLTKLRFLILRQC-SCLEY-MPS-LKELH-ELEIIDLS 540 (782)
Q Consensus 469 L~~~~~~~~lp~~~~~~l~~L~~L~l~~~-~l~~--lp~-l~~l~~L~~L~l~~~-~~~~~-~~~-~~~l~-~L~~L~l~ 540 (782)
+++|......+..+ +.+++|++|++++| .++. ++. +..+++|++|++++| .+... ++. +..++ +|+.|+++
T Consensus 125 L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77764222334443 66777777777777 4552 555 666677777777776 43221 222 35566 66666666
Q ss_pred CCC-CCC-cccccccCCCCCccEEEccCCC-CCC--CcCcCCCCcccEEEecCcCCCC--CCCCCCCCCCCCEEEcccC
Q 039334 541 GAT-SLS-SFQQLDFSSHTNLQMVDLSYTQ-IPW--LPKFTDLKHLSRILLRGCRKLH--ILPSFQKLHSLKILDLSEV 612 (782)
Q Consensus 541 ~~~-~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~--l~~~~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~ 612 (782)
+|. .+. ...+..+..+++|+.|++++|. +.. ++.+..+++|+.|++++|.... .+..+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 663 122 1222334455666666666665 321 2344455555555555553211 1112444555555555544
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=2.5e-16 Score=169.97 Aligned_cols=180 Identities=21% Similarity=0.189 Sum_probs=95.5
Q ss_pred CCCCccEEEEecCCCCCCC-----ccccCCCCCcEEEeecCCCCC----CCchHH------hcCCCCccEEEccCCCCCC
Q 039334 437 SFERLTVLVLRNCDMLEDI-----TGIKELKTLSVLEISGASSLK----SNPDEL------FDGMAQLQSLNLSRCPMKS 501 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~-----~~l~~l~~L~~L~L~~~~~~~----~lp~~~------~~~l~~L~~L~l~~~~l~~ 501 (782)
.+++|++|++++|.+.... ..+..+++|++|++++|. +. .+|..+ +..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 3455555555555443321 235566666666666652 22 233332 2456677777777776654
Q ss_pred -----CCC-CCCCCCCcEEEccCCCCCCC----CCC-ccCC---------CcccEEEccCCCCCCcccc---cccCCCCC
Q 039334 502 -----LPS-LPKLTKLRFLILRQCSCLEY----MPS-LKEL---------HELEIIDLSGATSLSSFQQ---LDFSSHTN 558 (782)
Q Consensus 502 -----lp~-l~~l~~L~~L~l~~~~~~~~----~~~-~~~l---------~~L~~L~l~~~~~~~~~~~---~~l~~l~~ 558 (782)
+|. +..+++|++|++++|.+... ++. +..+ ++|+.|++++|.......+ ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 444 56666777777766654211 111 2222 5666666666653212111 23445666
Q ss_pred ccEEEccCCCCC------CCc-CcCCCCcccEEEecCcCCC----CCC-CCCCCCCCCCEEEcccCCCCCc
Q 039334 559 LQMVDLSYTQIP------WLP-KFTDLKHLSRILLRGCRKL----HIL-PSFQKLHSLKILDLSEVGFSNF 617 (782)
Q Consensus 559 L~~L~l~~~~~~------~l~-~~~~l~~L~~L~l~~~~~~----~~~-~~l~~l~~L~~L~l~~~~l~~~ 617 (782)
|+.|++++|.+. ..+ .+..+++|+.|++++|... ..+ ..+..+++|+.|++++|.++..
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 777777776665 123 4555666666666665532 112 2355566666666666665543
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=2.6e-13 Score=132.46 Aligned_cols=144 Identities=26% Similarity=0.295 Sum_probs=83.1
Q ss_pred EEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCC
Q 039334 422 VLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMK 500 (782)
Q Consensus 422 ~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~ 500 (782)
.+++.++.+..++....++|++|++++|.+...++ .+..+++|++|++++|. +..++...|..+++|++|++++|.++
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCC
Confidence 44455555555555455566777777666655543 35667777777777663 55666655566777777777777766
Q ss_pred CCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCC
Q 039334 501 SLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYT 567 (782)
Q Consensus 501 ~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 567 (782)
.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 6665 56667777777766654433222 3555555555555554 23333333444555555555554
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.6e-13 Score=132.65 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=89.2
Q ss_pred CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCC-CCC-CCCCCCCcEE
Q 039334 437 SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKS-LPS-LPKLTKLRFL 514 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~-lp~-l~~l~~L~~L 514 (782)
.+++|+.|++++|.+...+ .+..+++|++|++++| .+..++ . +..+++|++|++++|.++. .|. +..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 6778888888888776444 6777888888888877 355554 3 4777888888888877765 344 7777777777
Q ss_pred EccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCcCCCCcccEEEecCcCCCC
Q 039334 515 ILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKFTDLKHLSRILLRGCRKLH 593 (782)
Q Consensus 515 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~ 593 (782)
++++|.+....+. +..+++|+.|++++|.. +..++.+..+++|+.|++++|...
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~------------------------i~~~~~l~~l~~L~~L~l~~n~i~- 172 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGA------------------------ITDIMPLKTLPELKSLNIQFDGVH- 172 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTB------------------------CCCCGGGGGCSSCCEEECTTBCCC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCC------------------------ccccHhhcCCCCCCEEECCCCCCc-
Confidence 7777765432222 34455555555554432 444444444455555555444322
Q ss_pred CCCCCCCCCCCCEEEcccCCC
Q 039334 594 ILPSFQKLHSLKILDLSEVGF 614 (782)
Q Consensus 594 ~~~~l~~l~~L~~L~l~~~~l 614 (782)
.++.+..+++|+.|++++|.+
T Consensus 173 ~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCTTGGGCSSCCEEEECBC--
T ss_pred ChHHhccCCCCCEEEeeCccc
Confidence 223445555666666665554
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=5.9e-15 Score=157.58 Aligned_cols=240 Identities=17% Similarity=0.146 Sum_probs=133.9
Q ss_pred EEEccCCCCCC-CCC-CCCCCCCcEEEccCCCCCCCCC-----CccCCC-cccEEEccCCCCCCcccccccCCC-----C
Q 039334 491 SLNLSRCPMKS-LPS-LPKLTKLRFLILRQCSCLEYMP-----SLKELH-ELEIIDLSGATSLSSFQQLDFSSH-----T 557 (782)
Q Consensus 491 ~L~l~~~~l~~-lp~-l~~l~~L~~L~l~~~~~~~~~~-----~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l-----~ 557 (782)
+++++.|.+++ +|. +...++|++|++++|.+....+ .+..++ +|+.|++++|. +.......+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCC
Confidence 45678888775 344 5566669999999987554332 246677 78888888886 344333334332 7
Q ss_pred CccEEEccCCCCCCCc-C-----cCCC-CcccEEEecCcCCCCCCC-----CCCC-CCCCCEEEcccCCCCCccccccCC
Q 039334 558 NLQMVDLSYTQIPWLP-K-----FTDL-KHLSRILLRGCRKLHILP-----SFQK-LHSLKILDLSEVGFSNFTEIKLKD 624 (782)
Q Consensus 558 ~L~~L~l~~~~~~~l~-~-----~~~l-~~L~~L~l~~~~~~~~~~-----~l~~-l~~L~~L~l~~~~l~~~~~~~~~~ 624 (782)
+|+.|++++|.+...+ . +..+ ++|+.|++++|....... .+.. .++|+.|++++|.++..+...+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888888776543 1 3334 677788887776433322 1333 247777777777766433222110
Q ss_pred CCCCCCCCCCCCccEEEecCCCCCCCCC-----cCCCC-CCCCEEEeecCCCcc-----ccc---c-ccccceeeccccc
Q 039334 625 PSTQQLPFLPCSLSELYLRKCSALEHLP-----LTTAL-KNLELLDLSNTNLKK-----LPS---E-LCNLRKLLLNNCL 689 (782)
Q Consensus 625 ~~~~~l~~~~~~L~~L~l~~~~~l~~l~-----~~~~l-~~L~~L~L~~~~l~~-----l~~---~-l~~L~~L~L~~~~ 689 (782)
.+...+++|++|++++|......+ .+..+ ++|+.|+|++|.++. ++. . .++|++|++++|.
T Consensus 161 ----~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 161 ----ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp ----HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred ----HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 001112367777777664322222 12233 367777777766664 333 1 2366666666663
Q ss_pred cCCCCC------CCCCCCcccEEecccCCCCCC--------CCC-CCCCCCcCEEeccCCCCC
Q 039334 690 SLTKLP------EMKGLEKLEELRLSGCINLTE--------LPN-LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 690 ~l~~l~------~~~~l~~L~~L~l~~c~~l~~--------l~~-~~~l~~L~~L~l~~~~l~ 737 (782)
++..+ .+..+++|+.|++++|. +.. ++. +..+++|+.|++++|++.
T Consensus 237 -l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 237 -LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp -CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred -CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 33322 13455666666666652 111 122 445566666666666654
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3.7e-13 Score=130.01 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=116.8
Q ss_pred CCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCC-CchHHhcCCCCccEEE
Q 039334 416 LMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKS-NPDELFDGMAQLQSLN 493 (782)
Q Consensus 416 ~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-lp~~~~~~l~~L~~L~ 493 (782)
.+++|+.|++.+|.+..++.. .+++|++|++++|.+ ..++.+..+++|++|++++|. +.. .+.. ++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKD-VTSDKIPN-LSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC-SCCGGGTTCTTCCEEEEECTT-CBGGGSCC-CTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC-CcchhhhcCCCCCEEEeECCc-cCcccChh-hcCCCCCCEEE
Confidence 467999999999999987754 899999999999965 445679999999999999986 543 4555 48999999999
Q ss_pred ccCCCCCC-CCC-CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC
Q 039334 494 LSRCPMKS-LPS-LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 494 l~~~~l~~-lp~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
+++|.++. .|. +..+++|++|++++|.....++.+..+++|+.|++++|. +.... .+..+++|+.|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH--HhccCCCCCEEEeeCcccC
Confidence 99999986 455 899999999999999856666777777788888877776 33322 5566677777777766543
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=7.1e-14 Score=141.60 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=103.4
Q ss_pred CCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEcc
Q 039334 417 MPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLS 495 (782)
Q Consensus 417 ~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~ 495 (782)
+.++..+.+.++.+..++.. .+++|++|++++|.+...+ .+..+++|++|++++|. +..++. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECC
Confidence 34556666777777666533 7778888888887765544 67777888888887774 666666 4778888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcCc
Q 039334 496 RCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPKF 575 (782)
Q Consensus 496 ~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~ 575 (782)
+|.++.+|.+.. ++|++|++++|.+. .++.+..+++|+.|++++| .+..++.+
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~Ls~N-------------------------~i~~~~~l 146 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNN-------------------------KLKSIVML 146 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCS-BSGGGTTCTTCCEEECTTS-------------------------CCCBCGGG
T ss_pred CCccCCcCcccc-CcccEEEccCCccC-CChhhcCcccccEEECCCC-------------------------cCCCChHH
Confidence 887777776333 77777777777533 2344455555555555554 44444444
Q ss_pred CCCCcccEEEecCcCCCCCCCCCCCCCCCCEEEcccCCCCC
Q 039334 576 TDLKHLSRILLRGCRKLHILPSFQKLHSLKILDLSEVGFSN 616 (782)
Q Consensus 576 ~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 616 (782)
..+++|+.|++++|..... +.+..+++|+.|++++|.+..
T Consensus 147 ~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 4444455555544433222 445555566666666655443
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.7e-14 Score=153.98 Aligned_cols=170 Identities=18% Similarity=0.169 Sum_probs=78.2
Q ss_pred EEecCCCCCCCccccCC-CCCcEEEeecCCCCCCCch----HHhcCCC-CccEEEccCCCCCCCCC--CCCC-----CCC
Q 039334 445 VLRNCDMLEDITGIKEL-KTLSVLEISGASSLKSNPD----ELFDGMA-QLQSLNLSRCPMKSLPS--LPKL-----TKL 511 (782)
Q Consensus 445 ~L~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~lp~----~~~~~l~-~L~~L~l~~~~l~~lp~--l~~l-----~~L 511 (782)
.++.+.+.+.++.+... ++|++|++++|. +...+. ..+..++ +|++|++++|.++.... +..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44444444444333333 336666666553 444443 2334555 56666666665554322 3222 556
Q ss_pred cEEEccCCCCCCCCCC-----ccCC-CcccEEEccCCCCCCcccccc----cCC-CCCccEEEccCCCCCCCc------C
Q 039334 512 RFLILRQCSCLEYMPS-----LKEL-HELEIIDLSGATSLSSFQQLD----FSS-HTNLQMVDLSYTQIPWLP------K 574 (782)
Q Consensus 512 ~~L~l~~~~~~~~~~~-----~~~l-~~L~~L~l~~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~l~------~ 574 (782)
++|++++|.+....+. +..+ ++|+.|++++|. +....... +.. .++|++|++++|.+.... .
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 6666666554332222 2233 455555555554 22222211 222 246666666666554211 1
Q ss_pred cCCCC-cccEEEecCcCCCCCCC-----CCCCC-CCCCEEEcccCCCCC
Q 039334 575 FTDLK-HLSRILLRGCRKLHILP-----SFQKL-HSLKILDLSEVGFSN 616 (782)
Q Consensus 575 ~~~l~-~L~~L~l~~~~~~~~~~-----~l~~l-~~L~~L~l~~~~l~~ 616 (782)
+..++ +|+.|++++|......+ .+..+ ++|+.|++++|.++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 22222 55566665554332221 12333 366666666666554
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=9.7e-15 Score=157.51 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=88.7
Q ss_pred CCCCceEEEccCCCCCCCChhh---HhcCCCCceEEEecCCCCCCCCc-------------cCCCCccEEEEecCCCCCC
Q 039334 391 KLREVLTLLIDGSRPCEEDHST---FFNLMPKLQVLAIFKPTFKSLMS-------------SSFERLTVLVLRNCDMLED 454 (782)
Q Consensus 391 ~~~~l~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~L~~L~L~~~~~~~~ 454 (782)
...+++.|.+++|.+....+.. .+..+++|++|++++|.+..+.. ..+++|++|+|++|.+...
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 3456777777777665433322 24456677777777665443211 1445666666666655441
Q ss_pred -----CccccCCCCCcEEEeecCCCCCCCch-HH---hcCC---------CCccEEEccCCCCC--CCC---C-CCCCCC
Q 039334 455 -----ITGIKELKTLSVLEISGASSLKSNPD-EL---FDGM---------AQLQSLNLSRCPMK--SLP---S-LPKLTK 510 (782)
Q Consensus 455 -----~~~l~~l~~L~~L~L~~~~~~~~lp~-~~---~~~l---------~~L~~L~l~~~~l~--~lp---~-l~~l~~ 510 (782)
+..+..+++|++|++++|. +...+. .+ +..+ ++|++|++++|.++ .+| . +..+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 2344556666666666653 321111 11 1222 56666666666554 233 2 344556
Q ss_pred CcEEEccCCCCCC-----CCC-CccCCCcccEEEccCCCCCC----cccccccCCCCCccEEEccCCCCC
Q 039334 511 LRFLILRQCSCLE-----YMP-SLKELHELEIIDLSGATSLS----SFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 511 L~~L~l~~~~~~~-----~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
|++|++++|.+.. ..+ .+..+++|+.|++++|. +. ...+..+..+++|+.|++++|.+.
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 6666666654331 122 34555555555555554 21 111223445555555555555544
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=2.8e-13 Score=137.24 Aligned_cols=168 Identities=19% Similarity=0.172 Sum_probs=130.5
Q ss_pred CCceEEEccCCCCCCCChhhHhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeec
Q 039334 393 REVLTLLIDGSRPCEEDHSTFFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISG 471 (782)
Q Consensus 393 ~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~ 471 (782)
.++..+.++++.+.... .+..+++|+.|++.+|.+..++.. .+++|++|++++|.+...++ +..+++|++|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 34445666666655332 244589999999999999988754 89999999999999887777 99999999999999
Q ss_pred CCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEccCCCCCCccccc
Q 039334 472 ASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQL 551 (782)
Q Consensus 472 ~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 551 (782)
|. +..+|.. .. ++|++|++++|.++.++.+..+++|+.|++++|.+. .++.+..+++|+.|++++|.. ... .
T Consensus 95 N~-l~~l~~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~-~~~~l~~l~~L~~L~L~~N~i-~~~--~ 166 (263)
T 1xeu_A 95 NR-LKNLNGI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEI-TNT--G 166 (263)
T ss_dssp SC-CSCCTTC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC-BCGGGGGCTTCCEEECTTSCC-CBC--T
T ss_pred Cc-cCCcCcc--cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCC-CChHHccCCCCCEEECCCCcC-cch--H
Confidence 95 7777763 33 999999999999999877889999999999999754 456677777888888777763 332 4
Q ss_pred ccCCCCCccEEEccCCCCCCC
Q 039334 552 DFSSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 552 ~l~~l~~L~~L~l~~~~~~~l 572 (782)
.+..+++|+.|++++|.+...
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 556666777777766665543
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=1.4e-12 Score=129.10 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=94.7
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
+.+++.++.+..+|....++|++|++++|.+.... ..+..+++|++|++++|. +..+|...|..+++|++|++++|.+
T Consensus 22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC
Confidence 44555566666666555567777777777776653 456777777777777774 6677766667777777777777777
Q ss_pred CCCCC--CCCCCCCcEEEccCCCCCCCCC-CccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC
Q 039334 500 KSLPS--LPKLTKLRFLILRQCSCLEYMP-SLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 500 ~~lp~--l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
+.+|. +..+++|+.|++++|.+. .+| .+..+++|+.|++++|. +.......+..+++|+.|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77765 567777777777777654 333 35666666666666654 33444444555666666666665543
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=9.2e-13 Score=128.51 Aligned_cols=166 Identities=25% Similarity=0.274 Sum_probs=123.7
Q ss_pred cEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCC
Q 039334 442 TVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQC 519 (782)
Q Consensus 442 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~ 519 (782)
+.++++++.+...+..+ .++|++|++++|. +..++...+..+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56677777766666544 4689999999985 778887767889999999999999998886 688999999999998
Q ss_pred CCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC--cCCCCcccEEEecCcCCCCCCC
Q 039334 520 SCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK--FTDLKHLSRILLRGCRKLHILP 596 (782)
Q Consensus 520 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~ 596 (782)
.+....+. +..+++|+.|+++++. +....+..+..+++|+.|++++|.+..++. +..+++|+.|++++|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----- 160 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW----- 160 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-----
Confidence 76544443 5788888888888876 455555567778888888888888777663 66677777777777632
Q ss_pred CCCCCCCCCEEEcccCCCCCc
Q 039334 597 SFQKLHSLKILDLSEVGFSNF 617 (782)
Q Consensus 597 ~l~~l~~L~~L~l~~~~l~~~ 617 (782)
.+.+++|+.|++..|.+++.
T Consensus 161 -~~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 161 -DCTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp -CCCTTTTHHHHHHHHHCTTT
T ss_pred -ecCCCCHHHHHHHHHhCCce
Confidence 23455666777766666543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=1.3e-12 Score=128.48 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=77.1
Q ss_pred EEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCC
Q 039334 422 VLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMK 500 (782)
Q Consensus 422 ~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~ 500 (782)
.+++.++.+..+|..-.+.|+.|++++|.+...++ .|..+++|++|++++|. +..+++..|..+++|++|++++|.++
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 44455555555544433556666666665555443 45666666666666663 44443333466666666666666666
Q ss_pred CCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 501 SLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 501 ~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
.+|. +..+++|+.|++++|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6655 45566666666666654433232 3445555555555444 2333333344455555555555443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=128.85 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=69.3
Q ss_pred EEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc--cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 422 VLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT--GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 422 ~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
.++++++.+..+|..-.+.+++|++++|.+...++ .+..+++|++|++++|. +..+++..|..+++|++|++++|.+
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCcc
Confidence 44444444444443333344555555555444322 24555555555555553 4444443335555555555555555
Q ss_pred CCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 500 KSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 500 ~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
+.+|. +..+++|++|++++|.+....|. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 55443 45555555555555544333222 3444444444444443 2333334444455555555555443
No 116
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.41 E-value=9.1e-12 Score=135.50 Aligned_cols=298 Identities=13% Similarity=0.100 Sum_probs=169.3
Q ss_pred chhhhhhhhHHHHHHHh-hc---C---CceEEEE--EcCCCchhHHHHHHHhhcccccc--ccc-ceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELL-KE---D---GRSTIIL--IGDPGLWKTWLEREISKNKVIAS--SSC-YTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l-~~---~---~~~vi~i--~G~~G~GKTtLa~~~~~~~~~~~--~~f-~~~~wv~~~~~~~~~ 69 (782)
+++|.+ ++++++.+++ .. + ..+++.| +|++|+||||||+.+++...... ..+ ..++|+.+....+..
T Consensus 23 ~l~gR~-~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 23 ELRVRR-GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SCSSSC-HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCChH-HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 357777 8888888888 42 2 3456666 99999999999999998722110 011 235788877777888
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccc---hhHHHHhhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMD---ENELVKEASSDF 146 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~---~~~~~~~~~~~~ 146 (782)
.++..++++++...... ..+.......+.+.+. -.+++++|||||++.-... ..+....-...+
T Consensus 102 ~~~~~l~~~l~~~~~~~----------~~~~~~~~~~l~~~l~---~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~ 168 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVR----------GAPALDILKALVDNLY---VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH 168 (412)
T ss_dssp HHHHHHHHHHTCCCCCT----------TCCHHHHHHHHHHHHH---HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCCCCC----------CCCHHHHHHHHHHHHH---hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH
Confidence 99999999886532100 1111223334444411 1377999999999853100 112111111111
Q ss_pred hhcCCCCC-CCCcEEEEEeecccc--------------CCCeeecCCCCHHHHHHHHHhhhc----cccchhHHHHHHHH
Q 039334 147 KNLLPSVQ-PDHLKIIMTRRTTKQ--------------SGKVIKFPSMSTEESLNLLKNEFS----DHQVSGELFEFIAE 207 (782)
Q Consensus 147 ~~~~p~~~-~~gs~IivTTr~~~~--------------~~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~i~~ 207 (782)
.. ++..+ .....||+||+.... ....+.+++++.++++++|...+. .....++....|++
T Consensus 169 ~~-~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 169 EE-IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HH-SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred Hh-cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 11 22100 023558888875421 123389999999999999976322 12234567888999
Q ss_pred hcC------CcHHHHHHHHHHH-h--hccc---cchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhh
Q 039334 208 KGR------RSPAAITMIAKAL-K--KVVQ---RDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSI 275 (782)
Q Consensus 208 ~c~------glPlai~~~~~~l-~--~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a 275 (782)
.|+ |.|..+..+.... . .... -....+...+.... . ...+.-.+..||.+ .+.++..+|
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----~----~~~~~~~l~~l~~~-~~~~l~aia 318 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----A----ASIQTHELEALSIH-ELIILRLIA 318 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------------CCSSSSSCHH-HHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----c----cchHHHHHHcCCHH-HHHHHHHHH
Confidence 999 9997655544322 1 1111 11122332332210 0 22345577889996 888888888
Q ss_pred cccc--CCccccHHHHHHHHH--H-cCC-CCCchhhHHHHHHHHHHHHHHHHHHhccCceecc
Q 039334 276 QFFR--KYRSIHYNVLITHWI--M-EGY-FEKDREVFELEKAYRKAHGALMDLIDRGILKAQD 332 (782)
Q Consensus 276 ~fp~--~~~~i~~~~Li~~Wi--a-egf-i~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~ 332 (782)
.+.+ +. .++..++...|. + +-. +.+-. . .....++++|+..+++....
T Consensus 319 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 319 EATLGGME-WINAGLLRQRYEDASLTMYNVKPRG----Y----TQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHTTCS-SBCHHHHHHHHHHHHHHHSCCCCCC----H----HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhcCCC-CccHHHHHHHHHHHHHhhcCCCCCC----H----HHHHHHHHHHHhCCCEEeec
Confidence 7652 23 466766665553 2 111 11100 0 22446899999999997643
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=1.2e-12 Score=139.47 Aligned_cols=167 Identities=20% Similarity=0.236 Sum_probs=94.7
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-ccc-CCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIK-ELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~-~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 498 (782)
+++++.++.+..+|..-.+.++.|+|++|.+...++ .+. ++++|++|+|++|. +..+++..|..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc
Confidence 355555555555555444556666666666655543 244 66677777776663 555555445666777777777776
Q ss_pred CCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCCCCCccccccc---CCCCCccEEEccCCCCCCC
Q 039334 499 MKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDF---SSHTNLQMVDLSYTQIPWL 572 (782)
Q Consensus 499 l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~l 572 (782)
++.+|. +..+++|+.|++++|.+....+. +..+++|+.|++++|. +..+....+ ..+++|+.|++++|.+..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 666654 66666777777766664433332 4556666666666655 333333333 3456666666666666655
Q ss_pred c--CcCCCCc--ccEEEecCc
Q 039334 573 P--KFTDLKH--LSRILLRGC 589 (782)
Q Consensus 573 ~--~~~~l~~--L~~L~l~~~ 589 (782)
+ .+..++. ++.|++.+|
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSS
T ss_pred CHHHhhhccHhhcceEEecCC
Confidence 5 2333443 244555444
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=8.7e-12 Score=123.41 Aligned_cols=124 Identities=28% Similarity=0.352 Sum_probs=64.6
Q ss_pred CccEEEecCCCCCCCCCc-CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCCC--CCCCCcccEEec
Q 039334 636 SLSELYLRKCSALEHLPL-TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLPE--MKGLEKLEELRL 708 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~-~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~~--~~~l~~L~~L~l 708 (782)
+|+.|++++|......+. +..+++|+.|+|++|.++.+|. .+++|+.|+|++| .++.++. +..+++|+.|++
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEec
Confidence 444444444432222222 4445555555555555555543 3455566666555 3444432 455666666666
Q ss_pred ccCCCCCCCCC-CCCCCCcCEEeccCCCCCCCChhhhCCCCCCcccEEeCCCCCCC
Q 039334 709 SGCINLTELPN-LNDFPKLDLLDISNTGIREIPDEILELSRPKIIREVDEETNQAE 763 (782)
Q Consensus 709 ~~c~~l~~l~~-~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~~l~~~~n~~~ 763 (782)
++| .++.+|. +..+++|+.|++++|+|+.+|.. .+..++.|+.+++++|.+.
T Consensus 120 s~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHG--AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECTTSCBC
T ss_pred cCC-cccccCcccccCCCCCEEECCCCcCCccCHH--HHhCCCCCCEEEeeCCCcc
Confidence 655 4555555 55566666666666666655542 2344445555666666655
No 119
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.36 E-value=3.2e-11 Score=127.96 Aligned_cols=279 Identities=11% Similarity=0.033 Sum_probs=157.3
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc------chhHHHHHHH
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY------SSNLLEEAIS 76 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~ 76 (782)
.+|.+ ++.+++.+++.++ +++.|+|++|+|||||++++++. . . .+|+.+.... +...+...+.
T Consensus 14 ~~gR~-~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~---~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 14 IFDRE-EESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE---R----P-GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp SCSCH-HHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH---S----S-EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred cCChH-HHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH---c----C-cEEEEeecccccccCCCHHHHHHHHH
Confidence 46666 8899999988764 79999999999999999999987 2 1 6788775543 5566666666
Q ss_pred HhhccC---------CCchhhhhhhhhhhhcccchhhhhhhchhhhcccc-CceeEEEecCCCCCccch-----hHHHHh
Q 039334 77 RQALCE---------SPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKED-KKNYHLVLDGEGINEMDE-----NELVKE 141 (782)
Q Consensus 77 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~kr~LlVlDdv~~~~~~~-----~~~~~~ 141 (782)
+.+... .-...+.... .......++...+.+. .+ .++++|||||++.. .. +.....
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-----~~~~~~~vlvlDe~~~~--~~~~~~~~~~~~~ 153 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLE--PRKLSLREVFRELNDL-----GEELGEFIVAFDEAQYL--RFYGSRGGKELLA 153 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSC--GGGCCHHHHHHHHHHH-----HHHHSCEEEEEETGGGG--GGBTTTTTHHHHH
T ss_pred HHHHHHHhHhhhceeEEEecceeec--cccchHHHHHHHHHHH-----HhccCCEEEEEeCHHHH--hccCccchhhHHH
Confidence 655320 0000000000 0011222233333333 22 23899999999864 21 111111
Q ss_pred hhhhhhhcCCCCCCCCcEEEEEeeccc----c----------C---CCeeecCCCCHHHHHHHHHhhhccc--cchhHHH
Q 039334 142 ASSDFKNLLPSVQPDHLKIIMTRRTTK----Q----------S---GKVIKFPSMSTEESLNLLKNEFSDH--QVSGELF 202 (782)
Q Consensus 142 ~~~~~~~~~p~~~~~gs~IivTTr~~~----~----------~---~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~ 202 (782)
.+..+.+. ..+.++|+|++... . . ...+.+.+|+.+|+.+++...++.. ...++..
T Consensus 154 ~L~~~~~~-----~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~ 228 (350)
T 2qen_A 154 LFAYAYDS-----LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228 (350)
T ss_dssp HHHHHHHH-----CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHh-----cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 12222211 13578999887531 0 1 1378999999999999998855432 2345678
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhhccccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCc
Q 039334 203 EFIAEKGRRSPAAITMIAKALKKVVQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYR 282 (782)
Q Consensus 203 ~~i~~~c~glPlai~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~ 282 (782)
..|...++|.|+++..++..+...... +.+...+..... ......+. .+.+ + +.. .+..+..+|. +
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~---~l~~-~-~~~-~~~~l~~la~---g-- 294 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDF--GRAMKRTLEVAK-GLIMGELE---ELRR-R-SPR-YVDILRAIAL---G-- 294 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH-HHHHHHHH---HHHH-H-CHH-HHHHHHHHHT---T--
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccH--hHHHHHHHHHHH-HHHHHHHH---HHHh-C-Chh-HHHHHHHHHh---C--
Confidence 899999999999999988765432111 121111110000 00000111 1112 2 554 7888888886 2
Q ss_pred cccHHHHHHHHHHc-CCCCCchhhHHHHHHHHHHHHHHHHHHhccCceec
Q 039334 283 SIHYNVLITHWIME-GYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQ 331 (782)
Q Consensus 283 ~i~~~~Li~~Wiae-gfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~ 331 (782)
.++...+.....+. |-+.. .....+++.|++.+++...
T Consensus 295 ~~~~~~l~~~~~~~~~~~~~-----------~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 295 YNRWSLIRDYLAVKGTKIPE-----------PRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp CCSHHHHHHHHHHTTCCCCH-----------HHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCH-----------HHHHHHHHHHHhCCCEEec
Confidence 24555555443221 10111 2345689999999999754
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=8.6e-12 Score=122.54 Aligned_cols=128 Identities=20% Similarity=0.313 Sum_probs=81.7
Q ss_pred cEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCC-CC-CCCCCCCcEEEccCC
Q 039334 442 TVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSL-PS-LPKLTKLRFLILRQC 519 (782)
Q Consensus 442 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~l-p~-l~~l~~L~~L~l~~~ 519 (782)
+.++++++.+...|..+. ++|+.|++++|. +..++...|..+++|++|++++|.++.+ |. +..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 566777777666665543 678888888774 6666665557788888888888887766 44 777788888888877
Q ss_pred CCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc
Q 039334 520 SCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 520 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+..++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 65432222 3556666666666655 33444445555555555555555555443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=4.8e-12 Score=134.77 Aligned_cols=171 Identities=20% Similarity=0.214 Sum_probs=127.9
Q ss_pred ccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhc-CCCCccEEEccCCCCCCCCC--CCCCCCCcEEEcc
Q 039334 441 LTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFD-GMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILR 517 (782)
Q Consensus 441 L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~-~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~ 517 (782)
-+.++++++.+...|..+. ..+++|+|++|. +..++...+. .+++|++|++++|.++.++. +..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4688888888877776553 468999999985 7888877666 89999999999999998875 8899999999999
Q ss_pred CCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC--c---CCCCcccEEEecCcCC
Q 039334 518 QCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK--F---TDLKHLSRILLRGCRK 591 (782)
Q Consensus 518 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~--~---~~l~~L~~L~l~~~~~ 591 (782)
+|.+....+. +..+++|+.|++++|. +....+..|..+++|+.|++++|.+..+|. + ..+++|+.|++++|..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9986544443 6888999999999887 555566778888999999999998888773 2 4577777777777654
Q ss_pred CCCCC-CCCCCCC--CCEEEcccCCCC
Q 039334 592 LHILP-SFQKLHS--LKILDLSEVGFS 615 (782)
Q Consensus 592 ~~~~~-~l~~l~~--L~~L~l~~~~l~ 615 (782)
....+ .+..++. |+.|++.+|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 43222 2444454 366777776654
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=1.5e-11 Score=120.84 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=83.6
Q ss_pred cEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCC-chHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccC
Q 039334 442 TVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSN-PDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQ 518 (782)
Q Consensus 442 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~l-p~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~ 518 (782)
+.++++++.+...+..+. ..+++|++++|. +..+ +...|..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 466677666665554442 345667777664 4444 33334666777777777776666554 66666666666666
Q ss_pred CCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCCC
Q 039334 519 CSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHILP 596 (782)
Q Consensus 519 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~ 596 (782)
|.+.... +..+..+++|+.|++++|.+..++ .+..+++|+.|++++|......+
T Consensus 91 N~l~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 91 NRLENVQ------------------------HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCCCC------------------------GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CccCccC------------------------HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 6543332 233444445555555555544442 34445555555555554444322
Q ss_pred -CCCCCCCCCEEEcccCCCCC
Q 039334 597 -SFQKLHSLKILDLSEVGFSN 616 (782)
Q Consensus 597 -~l~~l~~L~~L~l~~~~l~~ 616 (782)
.+..+++|+.|++++|.+..
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEEC
T ss_pred HHhcCCCCCCEEEecCcCCcC
Confidence 36667777777777776653
No 123
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=1.9e-10 Score=122.41 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=150.1
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc-----cchhHHHHHHHH
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK-----YSSNLLEEAISR 77 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~ 77 (782)
.+|.+ ++.+++.+ +.. +++.|+|++|+|||+|++.+++. ... ..+|+.+... .+...+...+.+
T Consensus 15 ~~gR~-~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 15 FFDRE-KEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE---LNL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp SCCCH-HHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH---HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred hcChH-HHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh---cCC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 46666 88889988 655 69999999999999999999987 222 2578887643 244455554444
Q ss_pred hhcc-------------CCCchhhhhhh-hh----hhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc---chh
Q 039334 78 QALC-------------ESPNIEEWEEQ-EE----EEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM---DEN 136 (782)
Q Consensus 78 ~~~~-------------~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~---~~~ 136 (782)
.+.. ...+....... .. ........+...+.+. -+ ++++|||||++.... .++
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-----SK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-----CS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-----CC-CCeEEEEECHHHhhccCchhH
Confidence 3321 00000000000 00 0011112222223222 12 489999999975310 111
Q ss_pred -HHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc--------------cC---CCeeecCCCCHHHHHHHHHhhhcccc-c
Q 039334 137 -ELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK--------------QS---GKVIKFPSMSTEESLNLLKNEFSDHQ-V 197 (782)
Q Consensus 137 -~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~--------------~~---~~~~~l~~L~~~~~~~Lf~~~~~~~~-~ 197 (782)
......++. ..+.++|+|+|... .. ...+.+.+|+.+|+.+++...++... .
T Consensus 158 ~~~l~~~~~~---------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 228 (357)
T 2fna_A 158 LPALAYAYDN---------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID 228 (357)
T ss_dssp HHHHHHHHHH---------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHc---------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 111111211 13578999998641 01 14788999999999999988553211 1
Q ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHhhccccchhHHHHHH-hhccccCCCCcccc-hhhhcccC--CCCchhhhhhhhh
Q 039334 198 SGELFEFIAEKGRRSPAAITMIAKALKKVVQRDSRDLASAI-GKAAYYEKPDRGVN-ELISCAYD--MLPSDVLKNCFWH 273 (782)
Q Consensus 198 ~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~-~~l~~sy~--~L~~~~lk~cfl~ 273 (782)
.++ ...|...|+|.|+++..++..+..... .+.+...+ .... ..+. .+-.+.++ .++.. .+..+..
T Consensus 229 ~~~-~~~i~~~t~G~P~~l~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~l~~~-~~~~l~~ 298 (357)
T 2fna_A 229 FKD-YEVVYEKIGGIPGWLTYFGFIYLDNKN--LDFAINQTLEYAK------KLILKEFENFLHGREIARKR-YLNIMRT 298 (357)
T ss_dssp CCC-HHHHHHHHCSCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHH------HHHHHHHHHHHTTCGGGHHH-HHHHHHH
T ss_pred CCc-HHHHHHHhCCCHHHHHHHHHHHccccc--hHHHHHHHHHHHH------HHHHHHHHHHhhccccccHH-HHHHHHH
Confidence 112 288999999999999999887654321 12222111 1100 0000 01111111 56674 8888888
Q ss_pred hhccccCCccccHHHHHHHHH-HcCC-CCCchhhHHHHHHHHHHHHHHHHHHhccCceecc
Q 039334 274 SIQFFRKYRSIHYNVLITHWI-MEGY-FEKDREVFELEKAYRKAHGALMDLIDRGILKAQD 332 (782)
Q Consensus 274 ~a~fp~~~~~i~~~~Li~~Wi-aegf-i~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~ 332 (782)
+|.- . +...+....- ..|. +.. .....+++.|++++++....
T Consensus 299 la~g-----~-~~~~l~~~~~~~~g~~~~~-----------~~~~~~L~~L~~~gli~~~~ 342 (357)
T 2fna_A 299 LSKC-----G-KWSDVKRALELEEGIEISD-----------SEIYNYLTQLTKHSWIIKEG 342 (357)
T ss_dssp HTTC-----B-CHHHHHHHHHHHHCSCCCH-----------HHHHHHHHHHHHTTSEEESS
T ss_pred HHcC-----C-CHHHHHHHHHHhcCCCCCH-----------HHHHHHHHHHHhCCCEEecC
Confidence 8872 2 3333332211 1121 111 23456899999999997543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=4.4e-15 Score=166.94 Aligned_cols=103 Identities=26% Similarity=0.317 Sum_probs=57.7
Q ss_pred CccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccccc---cccccceeeccccccCCCCCCCCCCCcccEEecccCC
Q 039334 636 SLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKLPS---ELCNLRKLLLNNCLSLTKLPEMKGLEKLEELRLSGCI 712 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l~~---~l~~L~~L~L~~~~~l~~l~~~~~l~~L~~L~l~~c~ 712 (782)
.|+.|++++| .+..+|.+..+++|+.|+|++|.++.+|. .+++|+.|+|++| .++.+|.+..+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSS-
T ss_pred CceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCCC-
Confidence 4566666665 34445555556666666666666665554 4455556666555 3444555555566666666555
Q ss_pred CCCCC--CC-CCCCCCcCEEeccCCCCCCCCh
Q 039334 713 NLTEL--PN-LNDFPKLDLLDISNTGIREIPD 741 (782)
Q Consensus 713 ~l~~l--~~-~~~l~~L~~L~l~~~~l~~lp~ 741 (782)
.++.+ |. +..+++|+.|++++|+++.+|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 44444 33 5555666666666665554443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=3.4e-11 Score=112.90 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=72.5
Q ss_pred CCceEEEecCCCCC--CCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCC-CchHHhcCCCCccEE
Q 039334 418 PKLQVLAIFKPTFK--SLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKS-NPDELFDGMAQLQSL 492 (782)
Q Consensus 418 ~~L~~L~l~~~~~~--~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-lp~~~~~~l~~L~~L 492 (782)
++|+.|++.+|.+. .++.. .+++|++|++++|.+... ..+..+++|++|++++|. +.. +|.. +..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDML-AEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHH-HHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHH-HhhCCCCCEE
Confidence 44555555555554 33332 566677777777766555 666777777777777775 444 4443 3567777777
Q ss_pred EccCCCCCCCC--C-CCCCCCCcEEEccCCCCCCCCC----CccCCCcccEEEccCC
Q 039334 493 NLSRCPMKSLP--S-LPKLTKLRFLILRQCSCLEYMP----SLKELHELEIIDLSGA 542 (782)
Q Consensus 493 ~l~~~~l~~lp--~-l~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~ 542 (782)
++++|.++.+| . +..+++|++|++++|.+....+ .+..+++|+.|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 77777777665 3 6667777777777765443222 1344444444444443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.9e-11 Score=114.62 Aligned_cols=133 Identities=23% Similarity=0.217 Sum_probs=94.9
Q ss_pred CCCCccEEEEecCCCC--CCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCC-CCC-CCCCCCCc
Q 039334 437 SFERLTVLVLRNCDML--EDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKS-LPS-LPKLTKLR 512 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~-lp~-l~~l~~L~ 512 (782)
..+.|+.|++++|.+. ..+..+..+++|++|++++|. +..+ .. +..+++|++|++++|.++. +|. +..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4578889999988877 555567888889999998885 6666 33 4788888889988888887 555 66688888
Q ss_pred EEEccCCCCCCCC--CCccCCCcccEEEccCCCCCCcccc---cccCCCCCccEEEccCCCCCCCc
Q 039334 513 FLILRQCSCLEYM--PSLKELHELEIIDLSGATSLSSFQQ---LDFSSHTNLQMVDLSYTQIPWLP 573 (782)
Q Consensus 513 ~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~l~ 573 (782)
+|++++|.+.... +.+..+++|+.|++++|. +..... ..+..+++|+.|++++|....+|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 8888888754422 345677777777777775 333322 35566777777777776665554
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=3.5e-12 Score=134.02 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=62.4
Q ss_pred CCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCccc-EEecccCCCCCCCCC--CCCCCCcC
Q 039334 657 LKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLE-ELRLSGCINLTELPN--LNDFPKLD 727 (782)
Q Consensus 657 l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~-~L~l~~c~~l~~l~~--~~~l~~L~ 727 (782)
+++|+.++|++|.++.+|. .+++|++|.+.++ ++.++ .+.++++|+ .|++.+ .++.++. |.+|++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 5677777777777777776 5667777777665 55565 367777787 777765 5666664 77778888
Q ss_pred EEeccCCCCCCCChh-hhCCCCCCc
Q 039334 728 LLDISNTGIREIPDE-ILELSRPKI 751 (782)
Q Consensus 728 ~L~l~~~~l~~lp~~-~~~l~~L~~ 751 (782)
.|++.+|.++.++.. +.++++|+.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCE
T ss_pred EEEeCCCccCccchhhhcCCcchhh
Confidence 888777777766553 344444443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=111.47 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=80.9
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMK 500 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~ 500 (782)
+++++.++.+..+|..-.+.|++|++++|.+...+..+..+++|++|++++|. +..++...|..+++|++|++++|.++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccC
Confidence 35666666666666554567777777777776666667777777777777774 66666655577777777777777777
Q ss_pred CCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCC
Q 039334 501 SLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGAT 543 (782)
Q Consensus 501 ~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 543 (782)
.++. +..+++|++|++++|.+....+. +..+++|+.|++++|.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7664 67777777777777765433332 4556666666665554
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.19 E-value=1.1e-09 Score=117.74 Aligned_cols=295 Identities=13% Similarity=0.135 Sum_probs=165.2
Q ss_pred chhhhhhhhHHHHHHHhhc----CCceEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHH
Q 039334 2 DSERVASSQKEKISELLKE----DGRSTIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~ 74 (782)
+++|.+ ++++++..++.. +..+.+.|+|++|+||||+|+.+++...... ..-..++|+......+...+...
T Consensus 20 ~~~gr~-~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 20 VLPHRE-AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp CCTTCH-HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCHH-HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 467777 889999998843 3456899999999999999999998721110 00124578888777788888999
Q ss_pred HHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCC
Q 039334 75 ISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQ 154 (782)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~ 154 (782)
++.+++..... . ..........+.+.+ .-.+++.+||||+++.- .........+..+........
T Consensus 99 l~~~l~~~~~~-~---------~~~~~~~~~~l~~~l---~~~~~~~vlilDEi~~l--~~~~~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 99 IAEAVGVRVPF-T---------GLSVGEVYERLVKRL---SRLRGIYIIVLDEIDFL--PKRPGGQDLLYRITRINQELG 163 (387)
T ss_dssp HHHHHSCCCCS-S---------CCCHHHHHHHHHHHH---TTSCSEEEEEEETTTHH--HHSTTHHHHHHHHHHGGGCC-
T ss_pred HHHHhCCCCCC-C---------CCCHHHHHHHHHHHH---hccCCeEEEEEccHhhh--cccCCCChHHHhHhhchhhcC
Confidence 99988653210 0 111112223333331 11467899999999854 111000112222222111110
Q ss_pred -CCCcEEEEEeeccccC-----------C-CeeecCCCCHHHHHHHHHhhhc----cccchhHHHHHHHHhcC---CcHH
Q 039334 155 -PDHLKIIMTRRTTKQS-----------G-KVIKFPSMSTEESLNLLKNEFS----DHQVSGELFEFIAEKGR---RSPA 214 (782)
Q Consensus 155 -~~gs~IivTTr~~~~~-----------~-~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~i~~~c~---glPl 214 (782)
..+..+|.||+..... . ..+.+++++.++..+++...+. .....+++.+.+++.++ |.|-
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred CCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 2346788888776211 1 3789999999999999998432 22334456778888887 9994
Q ss_pred -HHHHHHHHHhhc-----cccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHH
Q 039334 215 -AITMIAKALKKV-----VQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNV 288 (782)
Q Consensus 215 -ai~~~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~ 288 (782)
++.++..+.... ..-....+...+.... ...+.-++..|+.+ .+..++..+....+...+...+
T Consensus 244 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~---------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~ 313 (387)
T 2v1u_A 244 RALDLLRVAGEIAERRREERVRREHVYSARAEIE---------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGE 313 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH---------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh---------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHH
Confidence 333333322211 1112223333333211 11234456778885 5655555553322321455565
Q ss_pred HHHHHH----HcCCCCCchhhHHHHHHHHHHHHHHHHHHhccCceec
Q 039334 289 LITHWI----MEGYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQ 331 (782)
Q Consensus 289 Li~~Wi----aegfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~ 331 (782)
+.+... ..| +.+.. ...+..+++.|...+++...
T Consensus 314 ~~~~~~~~~~~~~-~~~~~--------~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 314 IYERYKELTSTLG-LEHVT--------LRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHHTT-CCCCC--------HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC-CCCCC--------HHHHHHHHHHHHhCCCeEEE
Confidence 544432 223 22211 13456688999999999764
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=7.8e-10 Score=118.88 Aligned_cols=286 Identities=13% Similarity=0.063 Sum_probs=159.5
Q ss_pred chhhhhhhhHHHHHHHhhc----CCceEEEEEcCCCchhHHHHHHHhhccccc---ccc--cceEEEEEccccc-chhHH
Q 039334 2 DSERVASSQKEKISELLKE----DGRSTIILIGDPGLWKTWLEREISKNKVIA---SSS--CYTTLWINKAEKY-SSNLL 71 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~---~~~--f~~~~wv~~~~~~-~~~~~ 71 (782)
+++|.+ ++++++.+++.. +..+.+.|+|++|+||||||+.+++..... ... ...++|+..+... +...+
T Consensus 21 ~l~gr~-~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 21 EIPFRE-DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SCTTCH-HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCChH-HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 467777 888888877743 345689999999999999999999872111 000 2356888877776 78888
Q ss_pred HHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhh-hhhhhhcC
Q 039334 72 EEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEA-SSDFKNLL 150 (782)
Q Consensus 72 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~-~~~~~~~~ 150 (782)
+..++.++.....+.. ..........+.+. ++.++.+|||||++......+ ... +..+....
T Consensus 100 ~~~l~~~l~~~~~~~~---------~~~~~~~~~~l~~~-----l~~~~~vlilDEi~~l~~~~~---~~~~l~~l~~~~ 162 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKH---------GINLGEYIDKIKNG-----TRNIRAIIYLDEVDTLVKRRG---GDIVLYQLLRSD 162 (384)
T ss_dssp HHHHHHHHHCSCCCSS---------SSCTHHHHHHHHHH-----HSSSCEEEEEETTHHHHHSTT---SHHHHHHHHTSS
T ss_pred HHHHHHHhcCCCCCCC---------CCCHHHHHHHHHHH-----hccCCCEEEEECHHHhccCCC---CceeHHHHhcCC
Confidence 8888888743211000 11112233444444 445555999999985310000 011 22222211
Q ss_pred CCCCCCCcEEEEEeecccc-----------CCCeeecCCCCHHHHHHHHHhhhc----cccchhHHHHHHHHhcC---Cc
Q 039334 151 PSVQPDHLKIIMTRRTTKQ-----------SGKVIKFPSMSTEESLNLLKNEFS----DHQVSGELFEFIAEKGR---RS 212 (782)
Q Consensus 151 p~~~~~gs~IivTTr~~~~-----------~~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~i~~~c~---gl 212 (782)
.+..||+||+.... ....+.+++++.++..++|...+. .....++..+.+++.++ |.
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~ 237 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGD 237 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCC
T ss_pred -----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCC
Confidence 45889999987521 124889999999999999998332 23344567788888887 88
Q ss_pred HH-HHHHHHHHHhhc---cccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhccccCCccccHHH
Q 039334 213 PA-AITMIAKALKKV---VQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFRKYRSIHYNV 288 (782)
Q Consensus 213 Pl-ai~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~i~~~~ 288 (782)
|. |+..+-.+.... ..-....+...+.... ...+..+++.|+.+ .+..+..++....+- .+. +.
T Consensus 238 ~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~---------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~-~~~-~~ 305 (384)
T 2qby_B 238 ARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE---------QERLIEAVKALPFH-YKLALRSLIESEDVM-SAH-KM 305 (384)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH---------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHH-HHH-HH
T ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh---------cchHHHHHHcCCHH-HHHHHHHHHHhcccC-hHH-HH
Confidence 86 444433332211 1112223443333311 12244456777774 555544444411100 111 11
Q ss_pred HHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHhccCceec
Q 039334 289 LITHWIMEGYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQ 331 (782)
Q Consensus 289 Li~~Wiaegfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~ 331 (782)
....--..| ..+.. . ....++++.|..++++...
T Consensus 306 ~~~~~~~~g-~~~~~----~----~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 306 YTDLCNKFK-QKPLS----Y----RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHTT-CCCCC----H----HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC-CCCCC----H----HHHHHHHHHHHhCCCEEEE
Confidence 111111223 22211 1 2345688999999999754
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=1.2e-10 Score=111.68 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=78.3
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCcc--ccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDITG--IKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 498 (782)
++++++++.+..+|..-...|++|++++|.+...++. +..+++|++|++++|. +..+++..|..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc
Confidence 4566666666666555445777777777776665542 6777777777777774 555543334777777777777777
Q ss_pred CCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCC
Q 039334 499 MKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGAT 543 (782)
Q Consensus 499 l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 543 (782)
++.++. +..+++|++|++++|.+....|. +..+++|+.|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 776654 66777777777777765544343 4555566666665554
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=2.4e-11 Score=114.79 Aligned_cols=125 Identities=12% Similarity=0.204 Sum_probs=88.5
Q ss_pred CCCCceEEEecCCCCCCCCcc-C-CCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEE
Q 039334 416 LMPKLQVLAIFKPTFKSLMSS-S-FERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLN 493 (782)
Q Consensus 416 ~~~~L~~L~l~~~~~~~~~~~-~-l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~ 493 (782)
.+.+|+.|++.+|.+..++.. . .++|++|++++|.+... +.+..+++|++|++++|. +..+|+.++..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEE
Confidence 456677777777776665433 3 34788888888777655 667888888888888874 6777766667788888888
Q ss_pred ccCCCCCCCCC---CCCCCCCcEEEccCCCCCCCCCC-----ccCCCcccEEEccCCC
Q 039334 494 LSRCPMKSLPS---LPKLTKLRFLILRQCSCLEYMPS-----LKELHELEIIDLSGAT 543 (782)
Q Consensus 494 l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~ 543 (782)
+++|.++.+|. +..+++|++|++++|.+.. +|. +..+++|+.|+++.+.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 88888877764 6677888888888876543 333 4666667777666554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=3.4e-11 Score=110.35 Aligned_cols=120 Identities=25% Similarity=0.273 Sum_probs=78.7
Q ss_pred CCceEEEecCCCCC--CCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCC-CchHHhcCCCCccEE
Q 039334 418 PKLQVLAIFKPTFK--SLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKS-NPDELFDGMAQLQSL 492 (782)
Q Consensus 418 ~~L~~L~l~~~~~~--~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~-lp~~~~~~l~~L~~L 492 (782)
++++.|++.+|.+. .++.. .+++|++|++++|.+... ..+..+++|++|++++|. +.. +|.. +..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVL-AEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHH-HHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHH-hhhCCCCCEE
Confidence 34555555555554 23322 566777777777766555 667778888888888875 554 5544 3678888888
Q ss_pred EccCCCCCCCC--C-CCCCCCCcEEEccCCCCCCCCC----CccCCCcccEEEcc
Q 039334 493 NLSRCPMKSLP--S-LPKLTKLRFLILRQCSCLEYMP----SLKELHELEIIDLS 540 (782)
Q Consensus 493 ~l~~~~l~~lp--~-l~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 540 (782)
++++|.++.+| . +..+++|++|++++|.+....+ .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888887764 4 7778888888888876544333 14666666666654
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.15 E-value=8.7e-10 Score=110.27 Aligned_cols=198 Identities=11% Similarity=0.106 Sum_probs=109.7
Q ss_pred chhhhhhhhHHHHHHHhhcCC-ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDG-RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
+++|.+ +.++.+..++..+. .+++.|+|++|+||||+|+.+++..... ..+. . ..+....-...+.....
T Consensus 24 ~~~g~~-~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~-~~~~---~----~~~~~~~~~~~~~~~~~ 94 (250)
T 1njg_A 24 DVVGQE-HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT---A----TPCGVCDNCREIEQGRF 94 (250)
T ss_dssp GCCSCH-HHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT-TCSC---S----SCCSCSHHHHHHHTTCC
T ss_pred HHhCcH-HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC---C----CCCcccHHHHHHhccCC
Confidence 456766 78889999987654 3478999999999999999998872221 1000 0 00000000111111000
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
.. .-..+............+...+... ...+++.+||+||++.. .. ..+..+...+... ..+.++
T Consensus 95 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vlviDe~~~l--~~-----~~~~~l~~~l~~~-~~~~~~ 159 (250)
T 1njg_A 95 VD---LIEIDAASRTKVEDTRDLLDNVQYA----PARGRFKVYLIDEVHML--SR-----HSFNALLKTLEEP-PEHVKF 159 (250)
T ss_dssp SS---EEEEETTCGGGHHHHHHHHHSCCCS----CSSSSSEEEEEETGGGS--CH-----HHHHHHHHHHHSC-CTTEEE
T ss_pred cc---eEEecCcccccHHHHHHHHHHhhhc----hhcCCceEEEEECcccc--cH-----HHHHHHHHHHhcC-CCceEE
Confidence 00 0000000000000011111111111 12567899999999864 21 1222332222211 245889
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
|+||+..... ...+.+++++.++..+++...+.. ....++....|++.|+|.|..+..+....
T Consensus 160 i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 160 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998776322 157899999999999999984432 23345678899999999999887766544
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.14 E-value=3.9e-09 Score=113.59 Aligned_cols=288 Identities=16% Similarity=0.136 Sum_probs=166.7
Q ss_pred chhhhhhhhHHHHHHHhhc----CCce--EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHH
Q 039334 2 DSERVASSQKEKISELLKE----DGRS--TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAI 75 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----~~~~--vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 75 (782)
+++|-+ ++++++..++.. .... .+.|+|++|+|||||++.+++.... ..-..++|+..+...+...+...+
T Consensus 18 ~l~gr~-~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 18 RLPHRE-QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD--KTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CCTTCH-HHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT--SCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCChH-HHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh--hcCeeEEEEeCccCCCHHHHHHHH
Confidence 467777 888888888854 2333 7999999999999999999987221 101245788877777788888999
Q ss_pred HHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCC
Q 039334 76 SRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQP 155 (782)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~ 155 (782)
+..++..... . ..........+.+.+ .-.+++.+||||+++.. +. .....+...+.....
T Consensus 95 ~~~l~~~~~~-~---------~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l--~~-----~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 95 ARSLNIPFPR-R---------GLSRDEFLALLVEHL---RERDLYMFLVLDDAFNL--AP-----DILSTFIRLGQEADK 154 (389)
T ss_dssp HHHTTCCCCS-S---------CCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGS--CH-----HHHHHHHHHTTCHHH
T ss_pred HHHhCccCCC-C---------CCCHHHHHHHHHHHH---hhcCCeEEEEEECcccc--ch-----HHHHHHHHHHHhCCC
Confidence 8888653210 0 011112222333331 01367889999999864 21 122333322221111
Q ss_pred ---CCcEEEEEeeccc----cC--------CCeeecCCCCHHHHHHHHHhhhcc----ccchhHHHHHHHHhc-------
Q 039334 156 ---DHLKIIMTRRTTK----QS--------GKVIKFPSMSTEESLNLLKNEFSD----HQVSGELFEFIAEKG------- 209 (782)
Q Consensus 156 ---~gs~IivTTr~~~----~~--------~~~~~l~~L~~~~~~~Lf~~~~~~----~~~~~~~~~~i~~~c------- 209 (782)
.+..||++|+... .. ...+.+++++.++..+++...+.. ....++....|++.+
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLD 234 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTC
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCC
Confidence 3567888887651 11 137999999999999999884322 233456788899988
Q ss_pred --CCcHHHHHHHHHHHhh------ccccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhccc---
Q 039334 210 --RRSPAAITMIAKALKK------VVQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFF--- 278 (782)
Q Consensus 210 --~glPlai~~~~~~l~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp--- 278 (782)
.|.|..+..+...... ...-....+...+.... ...+.-.+..|+.+ .+.++..++.+.
T Consensus 235 ~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~---------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~ 304 (389)
T 1fnn_A 235 TNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL---------FGISEEVLIGLPLH-EKLFLLAIVRSLKIS 304 (389)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS---------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh---------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhc
Confidence 7887544433322211 11112222333332211 11122335567775 676666666555
Q ss_pred cCCccccHHHHHHHHHH----cCCCCCchhhHHHHHHHHHHHHHHHHHHhccCceecc
Q 039334 279 RKYRSIHYNVLITHWIM----EGYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQD 332 (782)
Q Consensus 279 ~~~~~i~~~~Li~~Wia----egfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~~ 332 (782)
.+- .+....+...+.. .|....+. ....+++++|..++++....
T Consensus 305 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 305 HTP-YITFGDAEESYKIVCEEYGERPRVH---------SQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp CSS-CEEHHHHHHHHHHHHHHTTCCCCCH---------HHHHHHHHHHHHTTSSEEEE
T ss_pred cCC-CccHHHHHHHHHHHHHHcCCCCCCH---------HHHHHHHHHHHhCCCeEEee
Confidence 221 3666666655443 23211111 22446899999999998654
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=1.7e-09 Score=116.28 Aligned_cols=294 Identities=13% Similarity=0.094 Sum_probs=159.0
Q ss_pred chhhhhhhhHHHHHHHhhc----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKE----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISR 77 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 77 (782)
+++|.+ ++++++.+++.. +..+.+.|+|++|+||||||+.+++........-..++|+......+...+...++.
T Consensus 21 ~~~gr~-~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 21 ELPHRE-DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp CCTTCH-HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCChH-HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 467777 889999998863 345689999999999999999999872211000234678887777777888888888
Q ss_pred hhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCC
Q 039334 78 QALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDH 157 (782)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~g 157 (782)
+++..... . ..........+.+.+ ...+++.+||||+++.. .... ....+..+...+......+
T Consensus 100 ~l~~~~~~-~---------~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l--~~~~-~~~~l~~l~~~~~~~~~~~ 163 (386)
T 2qby_A 100 SLDVKVPF-T---------GLSIAELYRRLVKAV---RDYGSQVVIVLDEIDAF--VKKY-NDDILYKLSRINSEVNKSK 163 (386)
T ss_dssp TTSCCCCS-S---------SCCHHHHHHHHHHHH---HTCCSCEEEEEETHHHH--HHSS-CSTHHHHHHHHHHSCCC--
T ss_pred HhCCCCCC-C---------CCCHHHHHHHHHHHH---hccCCeEEEEEcChhhh--hccC-cCHHHHHHhhchhhcCCCe
Confidence 77542210 0 111122222333331 11356899999998853 1000 0011222221110001234
Q ss_pred cEEEEEeeccc----cCC--------CeeecCCCCHHHHHHHHHhhhc----cccchhHHHHHHHHhcC---CcHHHHH-
Q 039334 158 LKIIMTRRTTK----QSG--------KVIKFPSMSTEESLNLLKNEFS----DHQVSGELFEFIAEKGR---RSPAAIT- 217 (782)
Q Consensus 158 s~IivTTr~~~----~~~--------~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~i~~~c~---glPlai~- 217 (782)
..+|+||+... ... ..+.+++++.++..+++...+. .....+++...+++.++ |.|..+.
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 67788887652 111 4789999999999999998332 12334567777888777 9987443
Q ss_pred HHHHHHhh-----ccccchhHHHHHHhhccccCCCCcccchhhhcccCCCCchhhhhhhhhhhcccc-CCccccHHHHHH
Q 039334 218 MIAKALKK-----VVQRDSRDLASAIGKAAYYEKPDRGVNELISCAYDMLPSDVLKNCFWHSIQFFR-KYRSIHYNVLIT 291 (782)
Q Consensus 218 ~~~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~-~~~~i~~~~Li~ 291 (782)
++..+... ...-....+...+.... ...+.-.+..+|.+ .+..+..++...+ +...+...++.+
T Consensus 244 ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~---------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~ 313 (386)
T 2qby_A 244 LLRVSGEIAERMKDTKVKEEYVYMAKEEIE---------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYE 313 (386)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHH---------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHh---------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHH
Confidence 33322211 01112222333332211 12344456677774 5655555553322 211244544433
Q ss_pred HHH--H--cCCCCCchhhHHHHHHHHHHHHHHHHHHhccCceec
Q 039334 292 HWI--M--EGYFEKDREVFELEKAYRKAHGALMDLIDRGILKAQ 331 (782)
Q Consensus 292 ~Wi--a--egfi~~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~~ 331 (782)
... + -| +.+-. ......+++.|...+++...
T Consensus 314 ~~~~~~~~~g-~~~~~--------~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 314 TYLNICKKLG-VEAVT--------QRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHT-CCCCC--------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHhcC-CCCCC--------HHHHHHHHHHHHhCCCEEEE
Confidence 321 1 12 12110 02244588999999999653
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=7.5e-10 Score=104.61 Aligned_cols=122 Identities=24% Similarity=0.255 Sum_probs=73.6
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCCc-cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDIT-GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
+.+++.++.+..++....++|+.|++++|.+...++ .+..+++|++|++++|. +..+|...+..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc
Confidence 455555555555555445666777777666655543 35666777777777663 5666665556677777777777776
Q ss_pred CCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEccCCC
Q 039334 500 KSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDLSGAT 543 (782)
Q Consensus 500 ~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 543 (782)
+.+|. +..+++|++|++++|.+....+. +..+++|+.|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66665 56666777777766654432222 2445555555555554
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=1e-10 Score=122.86 Aligned_cols=74 Identities=22% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCCCCCCEEEeecCCCccccc----cccccc-eeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCC
Q 039334 654 TTALKNLELLDLSNTNLKKLPS----ELCNLR-KLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFP 724 (782)
Q Consensus 654 ~~~l~~L~~L~L~~~~l~~l~~----~l~~L~-~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~ 724 (782)
+..+++|+.|++.+| ++.++. .+++|+ .+.+.+ .++.++ .+.++++|+.|++.++ .++.++. |.+|+
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGV 321 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTC
T ss_pred hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCc
Confidence 444556666666665 555554 455666 666655 355554 4777888888888765 6777766 78888
Q ss_pred CcCEEec
Q 039334 725 KLDLLDI 731 (782)
Q Consensus 725 ~L~~L~l 731 (782)
+|+.+..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 8887753
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=4.3e-09 Score=103.46 Aligned_cols=181 Identities=9% Similarity=0.059 Sum_probs=110.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
+++|-+ +.++++.+++...+.+.+.|+|++|+|||++|+.+++.... ...-...+.+..+.......+. ..+..+..
T Consensus 18 ~~~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 94 (226)
T 2chg_A 18 EVVGQD-EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVR-HKIKEFAR 94 (226)
T ss_dssp GCCSCH-HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHH-HHHHHHHT
T ss_pred HHcCcH-HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHH-HHHHHHhc
Confidence 456666 78899999998776666999999999999999999886211 1111123344433333322221 11111111
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKII 161 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~Ii 161 (782)
. ... ..+++.+||+||++.. ..... ..+..+.... ..+.++|
T Consensus 95 ~-------------------------~~~-----~~~~~~vliiDe~~~l--~~~~~--~~l~~~l~~~----~~~~~~i 136 (226)
T 2chg_A 95 T-------------------------API-----GGAPFKIIFLDEADAL--TADAQ--AALRRTMEMY----SKSCRFI 136 (226)
T ss_dssp S-------------------------CCS-----TTCSCEEEEEETGGGS--CHHHH--HHHHHHHHHT----TTTEEEE
T ss_pred c-------------------------cCC-----CccCceEEEEeChhhc--CHHHH--HHHHHHHHhc----CCCCeEE
Confidence 0 000 1467899999999865 22211 1122222111 2457899
Q ss_pred EEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 162 MTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 162 vTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
+||+..... -..+.+++++.++..+++.+.+.. ....++....|++.++|.|..+..+...+
T Consensus 137 ~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998876321 147899999999999999984322 22345678889999999998655444433
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=9.1e-10 Score=105.45 Aligned_cols=123 Identities=22% Similarity=0.319 Sum_probs=83.4
Q ss_pred cEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCC
Q 039334 442 TVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQC 519 (782)
Q Consensus 442 ~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~ 519 (782)
++++++++.+...+..+. ++|++|++++|. +..+|..+ ..+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567787777776665443 578888888874 77777554 788888888888888887765 778888888888888
Q ss_pred CCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCC
Q 039334 520 SCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQI 569 (782)
Q Consensus 520 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 569 (782)
.+....+. +..+++|+.|++++|. +..+....+..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 75544332 5666666666666665 3344444455556666666655544
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=3.6e-11 Score=139.50 Aligned_cols=104 Identities=23% Similarity=0.357 Sum_probs=64.7
Q ss_pred CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEE
Q 039334 437 SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLI 515 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~ 515 (782)
.++.|+.|+|++|.+...+..+..+++|++|+|++|. +..+|..+ +.|++|++|+|++|.++.+|. ++.+++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 5566666666666665555555566666666666663 55666554 666666666666666666666 66666666666
Q ss_pred ccCCCCCCCCCC-ccCCCcccEEEccCCC
Q 039334 516 LRQCSCLEYMPS-LKELHELEIIDLSGAT 543 (782)
Q Consensus 516 l~~~~~~~~~~~-~~~l~~L~~L~l~~~~ 543 (782)
+++|.+. .+|. ++.+++|+.|++++|.
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 6666543 3343 5666666666666665
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=7e-10 Score=106.29 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=95.9
Q ss_pred ccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchH-HhcCCCCccEEEccCCCCCCC-CC-CCCCCCCcEEEcc
Q 039334 441 LTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDE-LFDGMAQLQSLNLSRCPMKSL-PS-LPKLTKLRFLILR 517 (782)
Q Consensus 441 L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~-~~~~l~~L~~L~l~~~~l~~l-p~-l~~l~~L~~L~l~ 517 (782)
-+.++++++.+...+..+.. +|++|++++|. +..++.. ++..+++|++|++++|.++.+ |. +..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 37888888888777765543 88999999885 6666653 458899999999999998877 45 8889999999999
Q ss_pred CCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC
Q 039334 518 QCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 518 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
+|.+....+. +..+++|+.|++++|. +....+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9876655554 6778888888888876 45555566777777888887777665
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=1.6e-09 Score=102.26 Aligned_cols=127 Identities=28% Similarity=0.326 Sum_probs=85.3
Q ss_pred CccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEcc
Q 039334 440 RLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILR 517 (782)
Q Consensus 440 ~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~ 517 (782)
..+.++++++.+...+..+ .++|++|++++|. +..++...+..+++|++|++++|.++.+|. +..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 3466777777766665433 3678888888874 667776666778888888888888887776 6778888888888
Q ss_pred CCCCCCCCCC-ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC
Q 039334 518 QCSCLEYMPS-LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP 570 (782)
Q Consensus 518 ~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 570 (782)
+|.+....+. +..+++|+.|++++|. +.......+..+++|+.|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 8765543333 4666667777666665 34444444555666666666666544
No 144
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=2.1e-10 Score=105.06 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=56.3
Q ss_pred CCCCcEEEeecCCCCC--CCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCc-cCCCcccEE
Q 039334 461 LKTLSVLEISGASSLK--SNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSL-KELHELEII 537 (782)
Q Consensus 461 l~~L~~L~L~~~~~~~--~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L 537 (782)
.++|+.|++++|. +. .+|..+ ..+++|++|++++|.++.++.+..+++|++|++++|.+...+|.. ..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLT-DEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCC-TTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCc-CChhHHHHHH-hhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3566666666664 33 555532 566666666666666665533666666666666666544434432 335555555
Q ss_pred EccCCCCCCcc-cccccCCCCCccEEEccCCCCCC
Q 039334 538 DLSGATSLSSF-QQLDFSSHTNLQMVDLSYTQIPW 571 (782)
Q Consensus 538 ~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 571 (782)
++++|. +... .+..+..+++|+.|++++|.+..
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 555554 2221 11334444444444444444443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=9.7e-09 Score=110.11 Aligned_cols=249 Identities=18% Similarity=0.277 Sum_probs=139.4
Q ss_pred CCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCCccCCCcccEEEc
Q 039334 462 KTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPSLKELHELEIIDL 539 (782)
Q Consensus 462 ~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 539 (782)
..++.+.+.. .+..++...|.++ +|+.+.+..+ ++.++. +.+ .+|+.+.+..+
T Consensus 113 ~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-------------------- 167 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-------------------- 167 (401)
T ss_dssp SSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--------------------
T ss_pred CCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--------------------
Confidence 4455555543 2555555544543 5666665543 444444 333 24555554431
Q ss_pred cCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCC--CCCCCCCCCCEEEcccCCCC
Q 039334 540 SGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHIL--PSFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 540 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~ 615 (782)
+..+....|..|.+|+.+++..+.+..++ .|. ..+|+.+.+..+ +..+ ..|.++++|+.+++.. .++
T Consensus 168 -----l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-~l~ 238 (401)
T 4fdw_A 168 -----LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-NVS 238 (401)
T ss_dssp -----CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT-TCC
T ss_pred -----ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC-Ccc
Confidence 22222334445555555555555544443 233 355555555432 2222 2366777777777765 244
Q ss_pred CccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCc-----cccc----cccccceee
Q 039334 616 NFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLK-----KLPS----ELCNLRKLL 684 (782)
Q Consensus 616 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~-----~l~~----~l~~L~~L~ 684 (782)
.++...+.. ++|+.+.+.+ .+..++. +..+++|+.+.+.++.+. .++. .+++|+.+.
T Consensus 239 ~I~~~aF~~----------~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 239 TIGQEAFRE----------SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE 306 (401)
T ss_dssp EECTTTTTT----------CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred Ccccccccc----------CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence 444444332 2677777754 3444443 667888888888876554 4554 567788888
Q ss_pred ccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCCChh-hhCCCCCCcccEEeCCC
Q 039334 685 LNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDE-ILELSRPKIIREVDEET 759 (782)
Q Consensus 685 L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~~l~~~~ 759 (782)
+.+ .++.++ .+.++++|+.|.|.. .++.++. |.+| +|+.+.+.+|.+..++.. +..++ ..+..+.+..
T Consensus 307 l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~--~~l~~l~vp~ 379 (401)
T 4fdw_A 307 IPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP--DDITVIRVPA 379 (401)
T ss_dssp CCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC--TTCCEEEECG
T ss_pred eCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC--CCccEEEeCH
Confidence 864 356665 477788888888854 3666665 7778 888888888876655433 22232 2445556555
Q ss_pred CCCC
Q 039334 760 NQAE 763 (782)
Q Consensus 760 n~~~ 763 (782)
|.+.
T Consensus 380 ~~~~ 383 (401)
T 4fdw_A 380 ESVE 383 (401)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 5443
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.02 E-value=4.2e-09 Score=113.42 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=43.8
Q ss_pred CCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCCc
Q 039334 655 TALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPKL 726 (782)
Q Consensus 655 ~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L 726 (782)
..+.+|+.+.+..+ ++.++. .+.+|+.+++.+ .++.+. .+.++.+|+.+++..+ ++.++. |.+|++|
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 34455555555432 444433 344555555532 234443 3555566666665432 444444 5556666
Q ss_pred CEEeccCCCCCCCChhhhCCCCCCc
Q 039334 727 DLLDISNTGIREIPDEILELSRPKI 751 (782)
Q Consensus 727 ~~L~l~~~~l~~lp~~~~~l~~L~~ 751 (782)
+.+.+..+ ++.+...+.+.++|+.
T Consensus 369 ~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 369 KKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CEEEECCC-CEEhhheecCCCCCcE
Confidence 66665432 3333344444444443
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.01 E-value=3.6e-10 Score=106.70 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=48.6
Q ss_pred cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCCCCc-cCCCccc
Q 039334 457 GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYMPSL-KELHELE 535 (782)
Q Consensus 457 ~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~ 535 (782)
.+.++.+|+.|++++|. +..+|. +....++|++|++++|.++.++.+..+++|++|++++|.+....+.+ ..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 35556677777777763 555543 21223377777777777666644666667777777766544322232 4555555
Q ss_pred EEEccCCC
Q 039334 536 IIDLSGAT 543 (782)
Q Consensus 536 ~L~l~~~~ 543 (782)
.|++++|.
T Consensus 92 ~L~L~~N~ 99 (176)
T 1a9n_A 92 ELILTNNS 99 (176)
T ss_dssp EEECCSCC
T ss_pred EEECCCCc
Confidence 55555554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=2.2e-08 Score=107.28 Aligned_cols=229 Identities=12% Similarity=0.204 Sum_probs=123.3
Q ss_pred CCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCcccEEEc
Q 039334 463 TLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHELEIIDL 539 (782)
Q Consensus 463 ~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l 539 (782)
+|+.+.+..+ +..++...|.+ .+|+.+.+.. .++.++. +.++++|+.+++..|.+. .++. .-...+|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEe
Confidence 4555555443 45555444444 2455665554 4444543 555566666666554322 2222 112345555555
Q ss_pred cCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCCCCCC--CCCCCCCCCCEEEcccCCCC
Q 039334 540 SGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRKLHIL--PSFQKLHSLKILDLSEVGFS 615 (782)
Q Consensus 540 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~l~ 615 (782)
..+ +..+....|..+++|+.+.+..+ +..++ .|.. .+|+.+.+..+ +..+ ..|.++++|+.+.+.++.+.
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred CCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCcccc
Confidence 432 33444556666667777766542 33332 2333 45666666432 2222 23666777777777654432
Q ss_pred CccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC--cCCCCCCCCEEEeecCCCccccc----cccccceeeccccc
Q 039334 616 NFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP--LTTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCL 689 (782)
Q Consensus 616 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~ 689 (782)
.. ....++ .+..+++|+.+.|. +.++.++. .+++|+.+.|..+
T Consensus 285 ~~-----------------------------~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 285 DD-----------------------------PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp CC-----------------------------TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CC-----------------------------cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-
Confidence 00 001111 14456667777776 34666655 4567777777543
Q ss_pred cCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCC-CcCEEeccCCCC
Q 039334 690 SLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFP-KLDLLDISNTGI 736 (782)
Q Consensus 690 ~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~-~L~~L~l~~~~l 736 (782)
++.+. .+.++ +|+.|++.++ .+..++. |.+++ +++.|.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHH
Confidence 55554 47777 8999999887 4555554 66664 677888776643
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.5e-08 Score=105.88 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=110.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
|++|-+ +.++.+.+++..+..+.+.|+|++|+||||+|+.+++.-... .....++++..+..... +..+++++.+..
T Consensus 22 ~~~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 98 (323)
T 1sxj_B 22 DIVGNK-ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGI-DVVRNQIKHFAQ 98 (323)
T ss_dssp GCCSCT-HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSH-HHHHTHHHHHHH
T ss_pred HHHCCH-HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccCh-HHHHHHHHHHHh
Confidence 456766 888999999988776668999999999999999999872221 11112345544433222 222222222210
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccc-cCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKE-DKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. ... . .+++.+||+||++.. ... .+..+...+... ..+.++
T Consensus 99 ~-------------------------~~~-----~~~~~~~viiiDe~~~l--~~~-----~~~~L~~~le~~-~~~~~~ 140 (323)
T 1sxj_B 99 K-------------------------KLH-----LPPGKHKIVILDEADSM--TAG-----AQQALRRTMELY-SNSTRF 140 (323)
T ss_dssp B-------------------------CCC-----CCTTCCEEEEEESGGGS--CHH-----HHHTTHHHHHHT-TTTEEE
T ss_pred c-------------------------ccc-----CCCCCceEEEEECcccC--CHH-----HHHHHHHHHhcc-CCCceE
Confidence 0 000 2 456889999999865 211 122222211111 245888
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHH-HHHHHHH
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAA-ITMIAKA 222 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPla-i~~~~~~ 222 (782)
|+||+..... ...+++++++.++..+++...+.. ....++....|++.++|.|.. +..+...
T Consensus 141 il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9988775321 157899999999999999883322 233456788999999999954 4444433
No 150
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=2e-09 Score=120.93 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=107.3
Q ss_pred hHhcCCCCceEEE-ecCCCCCCCCcc----------CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCch
Q 039334 412 TFFNLMPKLQVLA-IFKPTFKSLMSS----------SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPD 480 (782)
Q Consensus 412 ~~~~~~~~L~~L~-l~~~~~~~~~~~----------~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~ 480 (782)
..+..+++|+.|+ +..+.+..++.. ....|++|++++|.+...+. ++.+++|++|++++|. +..+|.
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~ 480 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCG
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccch
Confidence 4455567777776 443332221110 22368899999998877655 8899999999999885 778888
Q ss_pred HHhcCCCCccEEEccCCCCCCCCCCCCCCCCcEEEccCCCCCCCC-C-CccCCCcccEEEccCCCCCCcccc---cccCC
Q 039334 481 ELFDGMAQLQSLNLSRCPMKSLPSLPKLTKLRFLILRQCSCLEYM-P-SLKELHELEIIDLSGATSLSSFQQ---LDFSS 555 (782)
Q Consensus 481 ~~~~~l~~L~~L~l~~~~l~~lp~l~~l~~L~~L~l~~~~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~ 555 (782)
.+ +.+++|++|++++|.++.+|.++.+++|+.|++++|.+.... | .+..+++|+.|++++|.. ...++ ..+..
T Consensus 481 ~~-~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~ 558 (567)
T 1dce_A 481 AL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEM 558 (567)
T ss_dssp GG-GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHH
T ss_pred hh-hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHH
Confidence 75 889999999999999988888888999999999998876653 4 478899999999998873 33222 12234
Q ss_pred CCCccEEE
Q 039334 556 HTNLQMVD 563 (782)
Q Consensus 556 l~~L~~L~ 563 (782)
+++|+.|+
T Consensus 559 lp~L~~L~ 566 (567)
T 1dce_A 559 LPSVSSIL 566 (567)
T ss_dssp CTTCSEEE
T ss_pred CcccCccC
Confidence 67888775
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=5.9e-10 Score=129.31 Aligned_cols=117 Identities=22% Similarity=0.196 Sum_probs=96.0
Q ss_pred ChhhHhcCCCCceEEEecCCCCCCCCcc--CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCC
Q 039334 409 DHSTFFNLMPKLQVLAIFKPTFKSLMSS--SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGM 486 (782)
Q Consensus 409 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l 486 (782)
.+...+..++.|+.|++++|.+..++.. .+++|++|+|++|.+...+..|.++++|++|+|++|. +..+|..+ +.|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~-~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAEL-GSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSG-GGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhh-cCC
Confidence 4556677789999999999999887766 7899999999999988777789999999999999985 77888886 889
Q ss_pred CCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCCCCCCCCC
Q 039334 487 AQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCSCLEYMPS 527 (782)
Q Consensus 487 ~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~~~~~~~~ 527 (782)
++|++|+|++|.++.+|. ++.+++|+.|++++|.+.+.+|.
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 999999999999999998 99999999999999987655443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=4e-09 Score=98.70 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=72.3
Q ss_pred ceEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC
Q 039334 420 LQVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 420 L~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 498 (782)
.+.++++++.+..+|..-.+.|++|++++|.+...+ ..|.++++|++|++++|. +..+|...|..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc
Confidence 356666666666666555577777777777776664 357777777777777774 667777666777777777777777
Q ss_pred CCCCCC--CCCCCCCcEEEccCCCCC
Q 039334 499 MKSLPS--LPKLTKLRFLILRQCSCL 522 (782)
Q Consensus 499 l~~lp~--l~~l~~L~~L~l~~~~~~ 522 (782)
++.+|. +..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 777765 667777777777777643
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=4.4e-09 Score=98.72 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=70.4
Q ss_pred eEEEecCCCCCCCCccCCCCccEEEEecCCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 421 QVLAIFKPTFKSLMSSSFERLTVLVLRNCDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 421 ~~L~l~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
+.++++++.+..+|..-.++|++|++++|.+...+ ..|.++++|++|+|++|. +..+|..+|..+++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc
Confidence 45666666666666554567777777777776664 356777777777777773 6677776667777777777777777
Q ss_pred CCCCC--CCCCCCCcEEEccCCCCC
Q 039334 500 KSLPS--LPKLTKLRFLILRQCSCL 522 (782)
Q Consensus 500 ~~lp~--l~~l~~L~~L~l~~~~~~ 522 (782)
+.+|. +..+++|++|++++|.+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 77765 667777777777777643
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=1.4e-08 Score=95.31 Aligned_cols=102 Identities=25% Similarity=0.398 Sum_probs=59.8
Q ss_pred CEEEeecCCCccccc-cccccceeeccccccCCCC-C-CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCC
Q 039334 661 ELLDLSNTNLKKLPS-ELCNLRKLLLNNCLSLTKL-P-EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTG 735 (782)
Q Consensus 661 ~~L~L~~~~l~~l~~-~l~~L~~L~L~~~~~l~~l-~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~ 735 (782)
+.++++++.++.+|. ..++|+.|++++|. ++.+ | .+.++++|+.|++++| .++.+|. +..+++|+.|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 455666666666655 33556666666663 3333 2 3556666666666666 5656655 4566667777776666
Q ss_pred CCCCChhhhCCCCCCcccEEeCCCCCCCCCc
Q 039334 736 IREIPDEILELSRPKIIREVDEETNQAEDVN 766 (782)
Q Consensus 736 l~~lp~~~~~l~~L~~L~~l~~~~n~~~~~~ 766 (782)
|+.+|... +..++.|+.|++++|.+....
T Consensus 93 l~~l~~~~--~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGA--FDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTT--TTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHH--hccccCCCEEEeCCCCccccc
Confidence 66665531 234445556666666666544
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.84 E-value=2.5e-11 Score=117.22 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=78.0
Q ss_pred HhcCCCCceEEEecCCCCCCCCcc-CCCCccEEEEecCCCCCCCccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccE
Q 039334 413 FFNLMPKLQVLAIFKPTFKSLMSS-SFERLTVLVLRNCDMLEDITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQS 491 (782)
Q Consensus 413 ~~~~~~~L~~L~l~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~ 491 (782)
.+..+++|++|++++|.+..++.. .+++|++|++++|.+...+..+..+++|++|++++|. +..+| . +..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~-~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G-IEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H-HHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c-cccCCCCCE
Confidence 455678888888888877776632 6778888888888777666556667788888888774 66665 3 367778888
Q ss_pred EEccCCCCCCCCC---CCCCCCCcEEEccCCCCCCC
Q 039334 492 LNLSRCPMKSLPS---LPKLTKLRFLILRQCSCLEY 524 (782)
Q Consensus 492 L~l~~~~l~~lp~---l~~l~~L~~L~l~~~~~~~~ 524 (782)
|++++|.++.+|. +..+++|++|++++|.+...
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 8888887776553 66777778887777765443
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=1.6e-08 Score=94.46 Aligned_cols=100 Identities=24% Similarity=0.362 Sum_probs=51.6
Q ss_pred CEEEeecCCCccccc-cccccceeeccccccCCCC-C-CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCC
Q 039334 661 ELLDLSNTNLKKLPS-ELCNLRKLLLNNCLSLTKL-P-EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTG 735 (782)
Q Consensus 661 ~~L~L~~~~l~~l~~-~l~~L~~L~L~~~~~l~~l-~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~ 735 (782)
+.+++++|.++.+|. ..++|++|++++| .++.+ + .+.++++|++|++++| .++.++. +..+++|+.|++++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555554 2345555555555 23333 2 2555566666666655 4555544 4556666666666666
Q ss_pred CCCCChhhhCCCCCCcccEEeCCCCCCCC
Q 039334 736 IREIPDEILELSRPKIIREVDEETNQAED 764 (782)
Q Consensus 736 l~~lp~~~~~l~~L~~L~~l~~~~n~~~~ 764 (782)
|+.+|... +..++.|+.|++++|.++-
T Consensus 90 l~~~~~~~--~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGA--FDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTT--TTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHH--hcCCCCCCEEEeCCCCCCC
Confidence 65555431 2334444455666665543
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=8.4e-08 Score=100.34 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=108.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
|++|-+ +.++.+.+++..+..+.+.++|++|+||||+|+.+++.-...... ..++.+..+.......+ +..+..+..
T Consensus 26 ~~~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 102 (327)
T 1iqp_A 26 DIVGQE-HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWR-HNFLELNASDERGINVI-REKVKEFAR 102 (327)
T ss_dssp TCCSCH-HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHH-HHEEEEETTCHHHHHTT-HHHHHHHHH
T ss_pred HhhCCH-HHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCccc-CceEEeeccccCchHHH-HHHHHHHHh
Confidence 567766 888999999988776679999999999999999999872111101 12234433321111111 111111000
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKII 161 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~Ii 161 (782)
.... ..+++.++|+||++..+....+. +..+... | ..+.++|
T Consensus 103 -------------------------~~~~-----~~~~~~vliiDe~~~l~~~~~~~----L~~~le~-~---~~~~~~i 144 (327)
T 1iqp_A 103 -------------------------TKPI-----GGASFKIIFLDEADALTQDAQQA----LRRTMEM-F---SSNVRFI 144 (327)
T ss_dssp -------------------------SCCG-----GGCSCEEEEEETGGGSCHHHHHH----HHHHHHH-T---TTTEEEE
T ss_pred -------------------------hCCc-----CCCCCeEEEEeCCCcCCHHHHHH----HHHHHHh-c---CCCCeEE
Confidence 0001 12667899999998652122211 2222211 1 2458899
Q ss_pred EEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHHHH
Q 039334 162 MTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAKAL 223 (782)
Q Consensus 162 vTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~~l 223 (782)
+||+..... ...+.+++++.++..+++...+.. -...++....|++.++|.|..+..+....
T Consensus 145 ~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 998775321 157889999999999998874332 23455778889999999998765444433
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=2.4e-07 Score=96.74 Aligned_cols=177 Identities=16% Similarity=0.124 Sum_probs=103.1
Q ss_pred chhhhhhhhHHHHHHHhhc-----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKE-----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 76 (782)
|++|-+ +.++++..++.. .....+.|+|++|+|||++|+++++. .... .+++..+......++ .
T Consensus 13 ~~ig~~-~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~---~~~~---~~~~~~~~~~~~~~l----~ 81 (324)
T 1hqc_A 13 EYIGQE-RLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE---LGVN---LRVTSGPAIEKPGDL----A 81 (324)
T ss_dssp TCCSCH-HHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH---HTCC---EEEECTTTCCSHHHH----H
T ss_pred HhhCHH-HHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH---hCCC---EEEEeccccCChHHH----H
Confidence 467776 777777777742 23457889999999999999999987 2222 245543322111111 1
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhh-hcCCCC--
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFK-NLLPSV-- 153 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~-~~~p~~-- 153 (782)
..+.+. ..++.+|+||+++.............+++.. ..+-..
T Consensus 82 ----------------------------~~l~~~------~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~ 127 (324)
T 1hqc_A 82 ----------------------------AILANS------LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGP 127 (324)
T ss_dssp ----------------------------HHHTTT------CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSS
T ss_pred ----------------------------HHHHHh------ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccc
Confidence 111111 1345689999998652111111112222211 000000
Q ss_pred -------CCCCcEEEEEeecccc--------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 154 -------QPDHLKIIMTRRTTKQ--------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 154 -------~~~gs~IivTTr~~~~--------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
...+.++|.||..... ....+.+++++.++..+++.+.... ....++....+++.+.|.|-.+
T Consensus 128 ~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l 207 (324)
T 1hqc_A 128 AARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVA 207 (324)
T ss_dssp SCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHH
T ss_pred cccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Confidence 0023567777775421 1257899999999999998884332 2334577889999999999877
Q ss_pred HHHHHHH
Q 039334 217 TMIAKAL 223 (782)
Q Consensus 217 ~~~~~~l 223 (782)
..+...+
T Consensus 208 ~~~l~~~ 214 (324)
T 1hqc_A 208 KRLFRRV 214 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 159
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.69 E-value=5.4e-11 Score=114.78 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=30.7
Q ss_pred cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC-CCCCCCCcEEEccCCC
Q 039334 457 GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS-LPKLTKLRFLILRQCS 520 (782)
Q Consensus 457 ~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~-l~~l~~L~~L~l~~~~ 520 (782)
.+..+++|++|++++|. +..+| . +..+++|++|++++|.++.+|. +..+++|+.|++++|.
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 34455555555555542 44444 2 2445555555555555555554 4444555555555554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=4.5e-07 Score=97.45 Aligned_cols=294 Identities=13% Similarity=0.134 Sum_probs=147.6
Q ss_pred CCCCccEEEEecCCCCCC-CccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcE
Q 039334 437 SFERLTVLVLRNCDMLED-ITGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRF 513 (782)
Q Consensus 437 ~l~~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~ 513 (782)
.+.+|+.+.+..+ +... ..+|.++.+|+.+++..+ +..++...|..+.+|+.+.+..+ +..+.. +..+..+..
T Consensus 69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 4456666666532 2222 134666666666666542 55555555556666665544432 333332 333332222
Q ss_pred EEccCCCCCCCCCCccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCc--CcCCCCcccEEEecCcCC
Q 039334 514 LILRQCSCLEYMPSLKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLP--KFTDLKHLSRILLRGCRK 591 (782)
Q Consensus 514 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~ 591 (782)
......... ....+..+++|+.+.+..+ ...+....|..+.+|+.+.+..+ +..++ .+..+..|+.+.+.....
T Consensus 145 ~~~~~~~~i-~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 145 TIPEGVTVI-GDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp ECCTTCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccCcccccc-chhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 211111100 0112455666666666543 22334445566666666665443 22222 344455555544433211
Q ss_pred CCCCCCCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC--cCCCCCCCCEEEeecCC
Q 039334 592 LHILPSFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP--LTTALKNLELLDLSNTN 669 (782)
Q Consensus 592 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~L~~L~L~~~~ 669 (782)
. .-.......+|+.+.+.. .++.++...+.. +..++.+.+..+ ...+. .+..++.|+.+......
T Consensus 221 ~-i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~---------~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 221 Y-LGDFALSKTGVKNIIIPD-SFTELGKSVFYG---------CTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp E-ECTTTTTTCCCCEEEECT-TCCEECSSTTTT---------CSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSE
T ss_pred E-eehhhcccCCCceEEECC-Cceecccccccc---------cccceeEEcCCC--cceeeccccccccccceeccCcee
Confidence 1 011122334566665543 122222222221 125666666543 22222 24556677777665543
Q ss_pred Cccc-cccccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCCcCEEeccCCCCCCCChh-h
Q 039334 670 LKKL-PSELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLDLLDISNTGIREIPDE-I 743 (782)
Q Consensus 670 l~~l-~~~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~~L~l~~~~l~~lp~~-~ 743 (782)
+... -....+|+.+.+.++ ++.++ .+.++.+|+.++|.. .++.++. |.+|++|+.+.+..+ ++.++.. +
T Consensus 288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 2211 115678888888643 55555 477889999999964 4777766 889999999999766 7766543 3
Q ss_pred hCCCCCCcccEEeCCC
Q 039334 744 LELSRPKIIREVDEET 759 (782)
Q Consensus 744 ~~l~~L~~L~~l~~~~ 759 (782)
..+++|+ .+++..
T Consensus 363 ~~C~~L~---~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLK---KVELPK 375 (394)
T ss_dssp TTCTTCC---EEEEEG
T ss_pred hCCCCCC---EEEECC
Confidence 4445544 555543
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.59 E-value=1.4e-06 Score=86.36 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=97.9
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhh
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
+..+.+..++.....+.+.|+|++|+||||+|+.+++.... ....+.|+..+...+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~-------------------- 94 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASI-------------------- 94 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGS--------------------
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHH--------------------
Confidence 44556666655555678899999999999999999987222 2234567765332110
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccch--hHHHHhhhhhhhhcCCCCCCCCcEEEEEeec
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDE--NELVKEASSDFKNLLPSVQPDHLKIIMTRRT 166 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~--~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~ 166 (782)
....+.. -.++.+||+||++...... .+.....++.... .+..+||+||+.
T Consensus 95 --------------~~~~~~~-------~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~------~~~~~ii~~~~~ 147 (242)
T 3bos_A 95 --------------STALLEG-------LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE------QKRGSLIVSASA 147 (242)
T ss_dssp --------------CGGGGTT-------GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH------HCSCEEEEEESS
T ss_pred --------------HHHHHHh-------ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHH------cCCCeEEEEcCC
Confidence 0011111 1445799999998642222 1111112222221 122358888875
Q ss_pred ccc----C----------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHH
Q 039334 167 TKQ----S----------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIA 220 (782)
Q Consensus 167 ~~~----~----------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~ 220 (782)
... . ...+.+++++.++..+++...+.. ....+++...+++.+.|.+-.+..+-
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 421 1 157899999999999999884332 23456778899999999987665443
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.56 E-value=7.2e-07 Score=92.81 Aligned_cols=178 Identities=10% Similarity=0.101 Sum_probs=106.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
|++|-+ +.++.+.+++..+..+.+.++|++|+|||++|+.+++.-...... ..++.+..+.......+
T Consensus 18 ~~~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~---------- 85 (319)
T 2chq_A 18 EVVGQD-EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWR-DNFIEMNASDERGIDVV---------- 85 (319)
T ss_dssp GSCSCH-HHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHH-HHCEEEETTSTTCTTTS----------
T ss_pred HHhCCH-HHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCccc-CCeEEEeCccccChHHH----------
Confidence 466766 788888888877766668999999999999999998862111101 11233333321111000
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccc-cCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKE-DKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
........+. ... .+++.++|+|+++.. .. .....+...+... ..+.++
T Consensus 86 -------------------~~~~~~~~~~---~~~~~~~~~vliiDe~~~l--~~-----~~~~~L~~~le~~-~~~~~~ 135 (319)
T 2chq_A 86 -------------------RHKIKEFART---APIGGAPFKIIFLDEADAL--TA-----DAQAALRRTMEMY-SKSCRF 135 (319)
T ss_dssp -------------------SHHHHHHHHS---CCSSSCCCEEEEEETGGGS--CH-----HHHHTTGGGTSSS-SSSEEE
T ss_pred -------------------HHHHHHHHhc---CCCCCCCceEEEEeCCCcC--CH-----HHHHHHHHHHHhc-CCCCeE
Confidence 0000000000 001 366789999999865 21 1233344333322 245788
Q ss_pred EEEeecccc-------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHHH
Q 039334 161 IMTRRTTKQ-------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIAK 221 (782)
Q Consensus 161 ivTTr~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~~ 221 (782)
|+||..... ....+++.+++.++..+++...+.. ....++....++..++|.+..+..+..
T Consensus 136 i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 136 ILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 888876531 1157899999999999998874332 233456788899999999976554433
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=3e-06 Score=90.94 Aligned_cols=271 Identities=14% Similarity=0.219 Sum_probs=127.2
Q ss_pred CccEEEEecCCCCCC-CccccCCCCCcEEEeecC--CCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEE
Q 039334 440 RLTVLVLRNCDMLED-ITGIKELKTLSVLEISGA--SSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFL 514 (782)
Q Consensus 440 ~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~--~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L 514 (782)
.|+.+.+..+ +... ..+|.++.+|+.+.+..+ ..+..++...|..+.+|+.+.+..+ ++.++. +..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777777643 2222 245777777777777653 2355566655666777776665543 455554 6667777777
Q ss_pred EccCCCCCCCCCC--ccCCCcccEEEccCCCCCCcccccccCCCCCccEEEccCCCCC-CCcCcCCCCcccEEEecCcCC
Q 039334 515 ILRQCSCLEYMPS--LKELHELEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIP-WLPKFTDLKHLSRILLRGCRK 591 (782)
Q Consensus 515 ~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~~~l~~L~~L~l~~~~~ 591 (782)
.+..+ ...++. +..+..|+.+.+..+ +..+....|.. ..|+.+.+..+-.. ....+..+.++..........
T Consensus 143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 143 TIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred cccce--eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccccccchhhhccccceeccccccc
Confidence 77543 222222 455666666665443 22333333432 34555555432111 111233444444444332111
Q ss_pred CCCCC--------------CCCCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCC--cCC
Q 039334 592 LHILP--------------SFQKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLP--LTT 655 (782)
Q Consensus 592 ~~~~~--------------~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~--~~~ 655 (782)
...-. .+.....+..+.+.. .++.++...+.. +..|+.+.+.+. ...+. .+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~---------c~~L~~i~lp~~--~~~I~~~aF~ 285 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDS---------CAYLASVKMPDS--VVSIGTGAFM 285 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTT---------CSSCCEEECCTT--CCEECTTTTT
T ss_pred ccccceeecccccccccccccccccccceEEcCC-cceEcccceeee---------cccccEEecccc--cceecCcccc
Confidence 10000 000111112222110 111111111111 114455554432 11121 144
Q ss_pred CCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCCcC
Q 039334 656 ALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPKLD 727 (782)
Q Consensus 656 ~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L~ 727 (782)
.+++|+.+.+. +.++.++. .+.+|+.+.|..+ ++.+. .+.++.+|+.+.|-. .++.++. |.+|++|+
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALN 360 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCC
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCC
Confidence 55666666664 33455544 3456666666432 44443 356666677766643 3555554 66667777
Q ss_pred EEeccCC
Q 039334 728 LLDISNT 734 (782)
Q Consensus 728 ~L~l~~~ 734 (782)
.+.+.++
T Consensus 361 ~i~~~~~ 367 (394)
T 4gt6_A 361 NIEYSGS 367 (394)
T ss_dssp EEEESSC
T ss_pred EEEECCc
Confidence 7766665
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.50 E-value=1.7e-06 Score=92.24 Aligned_cols=195 Identities=11% Similarity=0.113 Sum_probs=106.5
Q ss_pred chhhhhhhhHHHHHHHhhcCCc-eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGR-STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~-~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|-+ +.++.+.+++..++. +.+.|+|++|+||||+|+.+++..... ..+. ..++....-...+.....
T Consensus 17 ~~vg~~-~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 17 DVVGQE-HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TSCSCH-HHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT-TCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hccCcH-HHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCC-------CCCCcccHHHHHHhccCC
Confidence 567776 888899999877654 467899999999999999998863221 1110 011111111112211100
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
. +.-..+............+...+... ...+++.+||+||++.. .. .....+...+... ..+..+
T Consensus 88 ~---~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~vliiDe~~~l--~~-----~~~~~Ll~~le~~-~~~~~~ 152 (373)
T 1jr3_A 88 V---DLIEIDAASRTKVEDTRDLLDNVQYA----PARGRFKVYLIDEVHML--SR-----HSFNALLKTLEEP-PEHVKF 152 (373)
T ss_dssp S---SCEEEETTCSCCSSCHHHHHHHTTSC----CSSSSSEEEEEECGGGS--CH-----HHHHHHHHHHHSC-CSSEEE
T ss_pred C---ceEEecccccCCHHHHHHHHHHHhhc----cccCCeEEEEEECcchh--cH-----HHHHHHHHHHhcC-CCceEE
Confidence 0 00000000000000111111111111 12467789999999865 21 1122222222111 245778
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHH
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIA 220 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~ 220 (782)
|++|...... ...+++++++.++..+++.+.+.. ....++....|++.++|.|..+..+.
T Consensus 153 Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 153 LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred EEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 8887755221 267899999999999999874432 23345678889999999998776554
No 165
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=3.3e-06 Score=93.71 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=105.1
Q ss_pred chhhhhhhhHHHHHHHhhc-----------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccc
Q 039334 2 DSERVASSQKEKISELLKE-----------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAE 64 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-----------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 64 (782)
|++|-+ +.++++.+|+.. +..+.+.|+|++|+||||+|+.+++. . .+ .++.+..+.
T Consensus 40 dliG~~-~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~---l--~~-~~i~in~s~ 112 (516)
T 1sxj_A 40 QVCGNK-GSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE---L--GY-DILEQNASD 112 (516)
T ss_dssp GCCSCH-HHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH---T--TC-EEEEECTTS
T ss_pred HhcCCH-HHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH---c--CC-CEEEEeCCC
Confidence 567777 889999999854 12357899999999999999999987 2 12 234555444
Q ss_pred ccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhh
Q 039334 65 KYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASS 144 (782)
Q Consensus 65 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~ 144 (782)
.... .+....+...... .. +...+..........+++.+|++|+++......- ..+.
T Consensus 113 ~~~~-~~~~~~i~~~~~~---------------~~---~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----~~l~ 169 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDN---------------MS---VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----GGVG 169 (516)
T ss_dssp CCCH-HHHHHTGGGGTTB---------------CC---STTTTTC----CCSSTTSEEEEECSGGGCCTTST----THHH
T ss_pred cchH-HHHHHHHHHHhcc---------------cc---HHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----HHHH
Confidence 3332 2222222221110 00 0011110000000246788999999986421111 1122
Q ss_pred hhhhcCCCCCCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHh-hhc-cccchhHHHHHHHHhcCCc-H
Q 039334 145 DFKNLLPSVQPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKN-EFS-DHQVSGELFEFIAEKGRRS-P 213 (782)
Q Consensus 145 ~~~~~~p~~~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~-~~~-~~~~~~~~~~~i~~~c~gl-P 213 (782)
.+...+. ..+..||+++...... ...+.+++++.++..+.+.+ +.. .-...++....|++.++|. +
T Consensus 170 ~L~~~l~---~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR 246 (516)
T 1sxj_A 170 QLAQFCR---KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIR 246 (516)
T ss_dssp HHHHHHH---HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHH
T ss_pred HHHHHHH---hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Confidence 2222222 1335577777654211 15688999999999998887 322 1223456788899999995 4
Q ss_pred HHHHHHHH
Q 039334 214 AAITMIAK 221 (782)
Q Consensus 214 lai~~~~~ 221 (782)
-++..+..
T Consensus 247 ~~i~~L~~ 254 (516)
T 1sxj_A 247 QVINLLST 254 (516)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 55555443
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.42 E-value=2.2e-06 Score=87.46 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=96.2
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
|++|.+ +.++++.+++.. ...+-+.|+|++|+|||+||+++++. ....| +.+..+.-...
T Consensus 18 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~---~~~~~---~~v~~~~~~~~ 90 (285)
T 3h4m_A 18 DIGGLE-KQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE---TNATF---IRVVGSELVKK 90 (285)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH---TTCEE---EEEEGGGGCCC
T ss_pred HhcCHH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH---hCCCE---EEEehHHHHHh
Confidence 577888 888888887732 23456889999999999999999987 22222 33332221110
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc-------chhHHHHh
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM-------DENELVKE 141 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~-------~~~~~~~~ 141 (782)
.. ..........+... ...++.+|+||+++.... ........
T Consensus 91 --------------~~------------~~~~~~~~~~~~~~-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 139 (285)
T 3h4m_A 91 --------------FI------------GEGASLVKDIFKLA-----KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQR 139 (285)
T ss_dssp --------------ST------------THHHHHHHHHHHHH-----HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHH
T ss_pred --------------cc------------chHHHHHHHHHHHH-----HHcCCeEEEEECHHHhcccCccccCCccHHHHH
Confidence 00 00000011111112 245568999999874200 00011112
Q ss_pred hhhhhhhcCCC-CCCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhccccc-hhHHHHHHHHhc
Q 039334 142 ASSDFKNLLPS-VQPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFSDHQV-SGELFEFIAEKG 209 (782)
Q Consensus 142 ~~~~~~~~~p~-~~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~i~~~c 209 (782)
.+..+...+.. ....+..||.||+...... ..+.++..+.++-.++++........ .+.....+++..
T Consensus 140 ~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~ 219 (285)
T 3h4m_A 140 TLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMT 219 (285)
T ss_dssp HHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHC
T ss_pred HHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHc
Confidence 22222221110 1123577888887652211 46889999999999999884333221 222356777777
Q ss_pred CC-cHHHHH
Q 039334 210 RR-SPAAIT 217 (782)
Q Consensus 210 ~g-lPlai~ 217 (782)
.| .|-.+.
T Consensus 220 ~g~~~~~i~ 228 (285)
T 3h4m_A 220 EGCVGAELK 228 (285)
T ss_dssp TTCCHHHHH
T ss_pred CCCCHHHHH
Confidence 77 454443
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.37 E-value=1.1e-06 Score=83.77 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=37.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|.+ ++++++.+++.....+.+.|+|++|+|||++|+.+++.
T Consensus 23 ~~~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 23 PVIGRD-EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCSCH-HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccch-HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 456777 88999999987766677889999999999999999887
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=5.2e-06 Score=87.61 Aligned_cols=188 Identities=10% Similarity=0.073 Sum_probs=106.1
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhccccc-ccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIA-SSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|-+ +.++.+..++..+..+.+.++|++|+||||+|+.+++.-... ...+ .++.+..+...... .+++.+..+.
T Consensus 38 ~i~g~~-~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 114 (353)
T 1sxj_D 38 EVTAQD-HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGIS-IVREKVKNFA 114 (353)
T ss_dssp TCCSCC-TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHH-HHTTHHHHHH
T ss_pred HhhCCH-HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchH-HHHHHHHHHh
Confidence 567766 888999999987765568999999999999999998872211 0111 12334433321211 1222222111
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKI 160 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~I 160 (782)
.... . .......... -.+++-+|++|++......... .+..+..-. ....++
T Consensus 115 ~~~~------------~---~~~~~~~~~~-----~~~~~~vliiDE~~~l~~~~~~----~Ll~~le~~----~~~~~~ 166 (353)
T 1sxj_D 115 RLTV------------S---KPSKHDLENY-----PCPPYKIIILDEADSMTADAQS----ALRRTMETY----SGVTRF 166 (353)
T ss_dssp HSCC------------C---CCCTTHHHHS-----CCCSCEEEEETTGGGSCHHHHH----HHHHHHHHT----TTTEEE
T ss_pred hhcc------------c---ccchhhcccC-----CCCCceEEEEECCCccCHHHHH----HHHHHHHhc----CCCceE
Confidence 1000 0 0000000001 1245579999998864111111 122222111 134778
Q ss_pred EEEeeccccC-------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHHHHH
Q 039334 161 IMTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAITMIA 220 (782)
Q Consensus 161 ivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~~~~ 220 (782)
|++|...... ...+.+++++.++..+.+.+.+.. -...++....|++.++|.|-.+..+.
T Consensus 167 il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 167 CLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888665321 157889999999999988884332 23456788999999999997654443
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=9.2e-07 Score=93.22 Aligned_cols=96 Identities=24% Similarity=0.207 Sum_probs=44.2
Q ss_pred EecCC-CCCCCCcc-CCCCccEEEEec-CCCCCCC-ccccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCC
Q 039334 424 AIFKP-TFKSLMSS-SFERLTVLVLRN-CDMLEDI-TGIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPM 499 (782)
Q Consensus 424 ~l~~~-~~~~~~~~-~l~~L~~L~L~~-~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l 499 (782)
++.++ .+..+|.. .+++|+.|+|++ |.+...+ ..|.++++|++|+|++|. +..+++..|..|++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 44444432 334455555553 4444443 234555555555555542 4444443345555555555555555
Q ss_pred CCCCC-CCCCCCCcEEEccCCC
Q 039334 500 KSLPS-LPKLTKLRFLILRQCS 520 (782)
Q Consensus 500 ~~lp~-l~~l~~L~~L~l~~~~ 520 (782)
+.+|. +.....|+.|++.+|.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSC
T ss_pred ceeCHHHcccCCceEEEeeCCC
Confidence 55544 2222225555555443
No 170
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.8e-05 Score=79.19 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=96.3
Q ss_pred hhhhhhhHHHHHHHhh----cCCceEEEEEcCCCchhHHHHHHHhhccccccc-----ccceEEEEEcccccchhHHHHH
Q 039334 4 ERVASSQKEKISELLK----EDGRSTIILIGDPGLWKTWLEREISKNKVIASS-----SCYTTLWINKAEKYSSNLLEEA 74 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~----~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~-----~f~~~~wv~~~~~~~~~~~~~~ 74 (782)
.|.+ +|.++|...|. .+..+.+.|+|++|+|||++++++++.-..... .| .++.|....-.+...+...
T Consensus 23 ~~Re-~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 23 KSQV-EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHHH
Confidence 4455 78888887773 345668899999999999999999988322111 12 3466666666778889999
Q ss_pred HHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhc-cccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCC
Q 039334 75 ISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEEN-KEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSV 153 (782)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~ 153 (782)
|++++..+... .......+.+++... .-+++++++|||+++.-. .-+. +-.+..+ |..
T Consensus 101 I~~~L~g~~~~--------------~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~----L~~l~~~-~~~ 159 (318)
T 3te6_A 101 IWFAISKENLC--------------GDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKI----LQYFEKW-ISS 159 (318)
T ss_dssp HHHHHSCCC----------------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHH----HHHHHHH-HHC
T ss_pred HHHHhcCCCCC--------------chHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchH----HHHHHhc-ccc
Confidence 99998653210 011112222222211 124678999999998752 1111 1111111 110
Q ss_pred CCCCcEEEEEeecccc------------CC-CeeecCCCCHHHHHHHHHhh
Q 039334 154 QPDHLKIIMTRRTTKQ------------SG-KVIKFPSMSTEESLNLLKNE 191 (782)
Q Consensus 154 ~~~gs~IivTTr~~~~------------~~-~~~~l~~L~~~~~~~Lf~~~ 191 (782)
.....-||.++...+. .. ..+.+++.+.+|-.+++++.
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~R 210 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITR 210 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHH
Confidence 1112344445544311 11 46899999999999998883
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=1.1e-06 Score=92.57 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=62.3
Q ss_pred EEEecC-CCCCCCccccCCCCCcEEEeec-CCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCC
Q 039334 444 LVLRNC-DMLEDITGIKELKTLSVLEISG-ASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQC 519 (782)
Q Consensus 444 L~L~~~-~~~~~~~~l~~l~~L~~L~L~~-~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~ 519 (782)
++++++ .+...|. +..+.+|++|+|++ | .+..+|+..|..|++|++|+|++|.++.+|. +..+++|++|++++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456665 5555555 77777777777765 4 4666665555777777777777777776654 667777777777777
Q ss_pred CCCCCCCCc-cCCCcccEEEccCCCC
Q 039334 520 SCLEYMPSL-KELHELEIIDLSGATS 544 (782)
Q Consensus 520 ~~~~~~~~~-~~l~~L~~L~l~~~~~ 544 (782)
.+....+.. ..++ |+.|++.+|..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 654433333 3333 77777776653
No 172
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=1.6e-05 Score=79.93 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=89.7
Q ss_pred chhhhhhhhHHHHHHHh---hc---------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELL---KE---------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l---~~---------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++++.+++ .. ...+.+.|+|++|+|||++|+++++. ...+ .+.+..+.-.+.
T Consensus 7 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~---~~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 7 DVAGMH-EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE---AQVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp SSCSCH-HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH---HTCC---EEEEETTTTSSS-
T ss_pred HhCCHH-HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH---hCCC---EEEechHHHHhh-
Confidence 678888 6666666554 21 12345789999999999999999987 2222 234443322110
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccch--------hHHHHh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDE--------NELVKE 141 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~--------~~~~~~ 141 (782)
... .........+... ....+.+|+||+++.-.... ......
T Consensus 79 ---------~~~----------------~~~~~~~~~~~~a-----~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~ 128 (262)
T 2qz4_A 79 ---------IGG----------------LGAARVRSLFKEA-----RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQ 128 (262)
T ss_dssp ---------STT----------------HHHHHHHHHHHHH-----HHTCSEEEEEECC-------------------CH
T ss_pred ---------ccC----------------hhHHHHHHHHHHH-----HhcCCeEEEEeCcchhhccccccccCccchhHHH
Confidence 000 0001111122222 23457899999998530000 000001
Q ss_pred hhhhhhhcCCC-CCCCCcEEEEEeeccc----------cCCCeeecCCCCHHHHHHHHHhhhcc---ccchhHHHHHHHH
Q 039334 142 ASSDFKNLLPS-VQPDHLKIIMTRRTTK----------QSGKVIKFPSMSTEESLNLLKNEFSD---HQVSGELFEFIAE 207 (782)
Q Consensus 142 ~~~~~~~~~p~-~~~~gs~IivTTr~~~----------~~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~i~~ 207 (782)
.+..+...+.. ....+..||.||.... .....+.++..+.++-.++++..+.. ..........+++
T Consensus 129 ~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~ 208 (262)
T 2qz4_A 129 TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAE 208 (262)
T ss_dssp HHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Confidence 11222211111 1123466777776542 11256778899999999998873322 2222223578888
Q ss_pred hcCCcHH
Q 039334 208 KGRRSPA 214 (782)
Q Consensus 208 ~c~glPl 214 (782)
.+.|.+-
T Consensus 209 ~~~g~~~ 215 (262)
T 2qz4_A 209 LTPGFSG 215 (262)
T ss_dssp TCTTCCH
T ss_pred HCCCCCH
Confidence 8888754
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.30 E-value=2.7e-05 Score=80.59 Aligned_cols=182 Identities=19% Similarity=0.221 Sum_probs=97.6
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++.|.+.+.. ...+-|.++|++|+|||+||+++++... ...| +.+..+.-.+
T Consensus 13 di~G~~-~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~---~~i~~~~l~~-- 84 (322)
T 1xwi_A 13 DVAGLE-GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTF---FSISSSDLVS-- 84 (322)
T ss_dssp GSCSCH-HHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEE---EEEECCSSCC--
T ss_pred HhcCHH-HHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcE---EEEEhHHHHh--
Confidence 677888 777777776621 1234688999999999999999998720 1122 3343322110
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc----chhHHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM----DENELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~~ 145 (782)
....+ ....+...+... ...++.+|+||+++.... ............
T Consensus 85 --------~~~g~----------------~~~~~~~lf~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 135 (322)
T 1xwi_A 85 --------KWLGE----------------SEKLVKNLFQLA-----RENKPSIIFIDEIDSLCGSRSENESEAARRIKTE 135 (322)
T ss_dssp --------SSCCS----------------CHHHHHHHHHHH-----HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHH
T ss_pred --------hhhhH----------------HHHHHHHHHHHH-----HhcCCcEEEeecHHHhccccccccchHHHHHHHH
Confidence 00000 000011111111 245678999999985300 011111112222
Q ss_pred hhhcCCCC--CCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhcccc--chhHHHHHHHHhcCCc-
Q 039334 146 FKNLLPSV--QPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFSDHQ--VSGELFEFIAEKGRRS- 212 (782)
Q Consensus 146 ~~~~~p~~--~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~i~~~c~gl- 212 (782)
+...+-.. ...+-.||.||..+... ...+.++..+.++-.++++..+.... ..+.....|++.+.|.
T Consensus 136 ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 136 FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCC
T ss_pred HHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 22111100 12345666677655322 25677888888888899988554322 2345678899999987
Q ss_pred HHHHHHHH
Q 039334 213 PAAITMIA 220 (782)
Q Consensus 213 Plai~~~~ 220 (782)
+-.+..+.
T Consensus 216 gadl~~l~ 223 (322)
T 1xwi_A 216 GADISIIV 223 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44454443
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=1e-05 Score=85.38 Aligned_cols=95 Identities=11% Similarity=0.208 Sum_probs=59.7
Q ss_pred CceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccccC-------CCeeecCCCCHHHHHHHHHh
Q 039334 118 KKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQS-------GKVIKFPSMSTEESLNLLKN 190 (782)
Q Consensus 118 ~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~ 190 (782)
+++-++|+|++..- +.... ..-++.+.. .| .+..+|++|...... ...+++++++.++..+.+.+
T Consensus 133 ~~~~vlilDE~~~L--~~~~~-~~L~~~le~-~~----~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~ 204 (354)
T 1sxj_E 133 HRYKCVIINEANSL--TKDAQ-AALRRTMEK-YS----KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSD 204 (354)
T ss_dssp -CCEEEEEECTTSS--CHHHH-HHHHHHHHH-ST----TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred CCCeEEEEeCcccc--CHHHH-HHHHHHHHh-hc----CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHH
Confidence 46679999999874 22111 111222221 12 357888888775321 16789999999999999887
Q ss_pred hhcc--ccch-hHHHHHHHHhcCCcHHHHHHHH
Q 039334 191 EFSD--HQVS-GELFEFIAEKGRRSPAAITMIA 220 (782)
Q Consensus 191 ~~~~--~~~~-~~~~~~i~~~c~glPlai~~~~ 220 (782)
.... -... ++....|++.++|.+-.+..+.
T Consensus 205 ~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 205 VVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 2234 6678899999999986654433
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.25 E-value=3.1e-05 Score=80.55 Aligned_cols=168 Identities=13% Similarity=0.159 Sum_probs=98.3
Q ss_pred chhhhhhhhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
|++|-+ +.++.+.+++..+..+ ++-+.|++|+|||++|+++++. .. ..++.+..+.. . .+.+++++....
T Consensus 27 ~ivg~~-~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~---l~---~~~~~i~~~~~-~-~~~i~~~~~~~~ 97 (324)
T 3u61_B 27 ECILPA-FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD---VN---ADMMFVNGSDC-K-IDFVRGPLTNFA 97 (324)
T ss_dssp TSCCCH-HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH---TT---EEEEEEETTTC-C-HHHHHTHHHHHH
T ss_pred HHhCcH-HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH---hC---CCEEEEccccc-C-HHHHHHHHHHHH
Confidence 567776 7889999999876654 6677888999999999999987 21 12345554331 1 222222222211
Q ss_pred cCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc-cchhHHHHhhhhhhhhcCCCCCCCCcE
Q 039334 81 CESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE-MDENELVKEASSDFKNLLPSVQPDHLK 159 (782)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-~~~~~~~~~~~~~~~~~~p~~~~~gs~ 159 (782)
. .. ...+++.+|++||++.-. .+..+ .+..+.... ..+.+
T Consensus 98 ~---------------------------~~----~~~~~~~vliiDEi~~l~~~~~~~----~L~~~le~~----~~~~~ 138 (324)
T 3u61_B 98 S---------------------------AA----SFDGRQKVIVIDEFDRSGLAESQR----HLRSFMEAY----SSNCS 138 (324)
T ss_dssp H---------------------------BC----CCSSCEEEEEEESCCCGGGHHHHH----HHHHHHHHH----GGGCE
T ss_pred h---------------------------hc----ccCCCCeEEEEECCcccCcHHHHH----HHHHHHHhC----CCCcE
Confidence 1 00 024678899999999752 11111 122222111 13478
Q ss_pred EEEEeeccccC-C------CeeecCCCCHHHHHHHHHh-------hhc--cccchh-HHHHHHHHhcCCcHHHHH
Q 039334 160 IIMTRRTTKQS-G------KVIKFPSMSTEESLNLLKN-------EFS--DHQVSG-ELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 160 IivTTr~~~~~-~------~~~~l~~L~~~~~~~Lf~~-------~~~--~~~~~~-~~~~~i~~~c~glPlai~ 217 (782)
+|+||...... . ..+.+++++.++-.+++.. ... .-...+ +....|++.++|.+-.+.
T Consensus 139 iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 139 IIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred EEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHH
Confidence 88888876321 1 5789999998875443332 111 112234 778889999988775433
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.24 E-value=8.8e-06 Score=87.88 Aligned_cols=168 Identities=17% Similarity=0.105 Sum_probs=98.3
Q ss_pred chhhhhhhhH---HHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 2 DSERVASSQK---EKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 2 ~~~~~~~~~~---~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
|+||-+ +.+ ..+...+..+..+.+.|+|++|+||||+|+.+++. ....| +.++....-..-.+.++..
T Consensus 27 ~ivGq~-~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~---~~~~f-----~~l~a~~~~~~~ir~~~~~ 97 (447)
T 3pvs_A 27 QYIGQQ-HLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY---ANADV-----ERISAVTSGVKEIREAIER 97 (447)
T ss_dssp TCCSCH-HHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH---TTCEE-----EEEETTTCCHHHHHHHHHH
T ss_pred HhCCcH-HHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH---hCCCe-----EEEEeccCCHHHHHHHHHH
Confidence 456655 444 67777887777788999999999999999999987 22222 2222111111112222222
Q ss_pred hccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCc
Q 039334 79 ALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHL 158 (782)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs 158 (782)
... .. ..+++.+|+||+++.-+. .....++..+. .+.-
T Consensus 98 a~~---------------------------~~-----~~~~~~iLfIDEI~~l~~-------~~q~~LL~~le---~~~v 135 (447)
T 3pvs_A 98 ARQ---------------------------NR-----NAGRRTILFVDEVHRFNK-------SQQDAFLPHIE---DGTI 135 (447)
T ss_dssp HHH---------------------------HH-----HTTCCEEEEEETTTCC-------------CCHHHHH---TTSC
T ss_pred HHH---------------------------hh-----hcCCCcEEEEeChhhhCH-------HHHHHHHHHHh---cCce
Confidence 111 00 136778999999986511 12222332222 2234
Q ss_pred EEEE-Eeeccc--cCC------CeeecCCCCHHHHHHHHHhhhcc---------ccchhHHHHHHHHhcCCcHHHHHHHH
Q 039334 159 KIIM-TRRTTK--QSG------KVIKFPSMSTEESLNLLKNEFSD---------HQVSGELFEFIAEKGRRSPAAITMIA 220 (782)
Q Consensus 159 ~Iiv-TTr~~~--~~~------~~~~l~~L~~~~~~~Lf~~~~~~---------~~~~~~~~~~i~~~c~glPlai~~~~ 220 (782)
.+|. ||.+.. +.. .++.+++++.++...++.+.+.. ....++....|++.++|.+-.+..+-
T Consensus 136 ~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 136 TFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred EEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 4444 444442 111 57889999999999999884432 12245678889999999886554443
No 177
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=1.6e-08 Score=107.36 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCcccEEEecCcCCCCC----CC-CCC-CCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCC
Q 039334 578 LKHLSRILLRGCRKLHI----LP-SFQ-KLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHL 651 (782)
Q Consensus 578 l~~L~~L~l~~~~~~~~----~~-~l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l 651 (782)
+++|+.|++++|..... +. .+. ..++|+.|++++|.++..+...+.. ...+|++|+|++|. ++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------~L~~L~~L~Ls~n~-l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP--------VFLRARKLGLQLNS-LGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH--------HHHTEEEEECCSSC-CCHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH--------HHHhccHhhcCCCC-CCHH
Confidence 34566666666543211 11 111 2246666666666654322111110 00145666666652 2221
Q ss_pred Cc--C-----CCCCCCCEEEeecCCCcc-----ccc---cccccceeeccccccCCCC-----C-CCCCCCcccEEeccc
Q 039334 652 PL--T-----TALKNLELLDLSNTNLKK-----LPS---ELCNLRKLLLNNCLSLTKL-----P-EMKGLEKLEELRLSG 710 (782)
Q Consensus 652 ~~--~-----~~l~~L~~L~L~~~~l~~-----l~~---~l~~L~~L~L~~~~~l~~l-----~-~~~~l~~L~~L~l~~ 710 (782)
.. + ...++|+.|+|++|.++. ++. ..++|++|+|++|. ++.. + .+...++|+.|+|++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 10 1 234556666666665543 111 34556666666553 2211 1 133445566666665
Q ss_pred CCCCCCCC-----C-CCCCCCcCEEeccCCCCC
Q 039334 711 CINLTELP-----N-LNDFPKLDLLDISNTGIR 737 (782)
Q Consensus 711 c~~l~~l~-----~-~~~l~~L~~L~l~~~~l~ 737 (782)
| .++..+ . +..+++|+.|++++|.|+
T Consensus 221 N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 221 N-GAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp S-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred C-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5 333211 1 223455666666666555
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.23 E-value=4.1e-05 Score=80.54 Aligned_cols=182 Identities=19% Similarity=0.199 Sum_probs=97.0
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++++.+.+.. ...+.|.|+|++|+|||++|+++++. .... .+.+..+.-...
T Consensus 85 ~i~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~---~~~~---~~~i~~~~l~~~- 156 (357)
T 3d8b_A 85 DIAGVE-FAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ---SGAT---FFSISASSLTSK- 156 (357)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH---TTCE---EEEEEGGGGCCS-
T ss_pred HhCChH-HHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH---cCCe---EEEEehHHhhcc-
Confidence 567777 778888777632 23457889999999999999999987 2222 244554322211
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc----chhHHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM----DENELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~~ 145 (782)
... . ........+... ...++.+|+||+++.... ............
T Consensus 157 ---------~~g-----------~-----~~~~~~~~~~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 206 (357)
T 3d8b_A 157 ---------WVG-----------E-----GEKMVRALFAVA-----RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTE 206 (357)
T ss_dssp ---------STT-----------H-----HHHHHHHHHHHH-----HHTCSEEEEEETHHHHTBC------CHHHHHHHH
T ss_pred ---------ccc-----------h-----HHHHHHHHHHHH-----HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHH
Confidence 000 0 000001111111 235678999999853200 001111111222
Q ss_pred hhhcC---CCCCCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCC-
Q 039334 146 FKNLL---PSVQPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRR- 211 (782)
Q Consensus 146 ~~~~~---p~~~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~g- 211 (782)
++..+ ......+-.||.||...... ...+.++..+.++..+++...+.. ....++....|++.+.|
T Consensus 207 lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~ 286 (357)
T 3d8b_A 207 FLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAF 286 (357)
T ss_dssp HHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTC
T ss_pred HHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCC
Confidence 22111 11111335666677654221 246788888888888888873322 12235667889999988
Q ss_pred cHHHHHHHHH
Q 039334 212 SPAAITMIAK 221 (782)
Q Consensus 212 lPlai~~~~~ 221 (782)
.+-++..+..
T Consensus 287 s~~dl~~l~~ 296 (357)
T 3d8b_A 287 SGADMTQLCR 296 (357)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555554433
No 179
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.22 E-value=3.6e-05 Score=82.44 Aligned_cols=255 Identities=12% Similarity=0.174 Sum_probs=133.8
Q ss_pred cccCCCCCcEEEeecCCCCCCCchHHhcCCCCccEEEccCCCCCCCCC--CCCCCCCcEEEccCCCCCCCCCC-ccCCCc
Q 039334 457 GIKELKTLSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCPMKSLPS--LPKLTKLRFLILRQCSCLEYMPS-LKELHE 533 (782)
Q Consensus 457 ~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~l~~lp~--l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~ 533 (782)
+|.++.+|+.+.+..+ +..++...|..+.+|+.+.+.. .+..++. +..+..|+.+.+..+ +..+.. .-....
T Consensus 109 aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~ 183 (394)
T 4gt6_A 109 AFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTA 183 (394)
T ss_dssp TTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCC
T ss_pred hchhcccceeeccCCc--cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce--eeEeccccccccc
Confidence 4556666666655442 5555555556667777777654 2344444 566667777766543 222222 112235
Q ss_pred ccEEEccCCCCCCcccccccCCCCCccEEEccCCCCCCCcC---------------cCCCCcccEEEecCcCCCCCCCCC
Q 039334 534 LEIIDLSGATSLSSFQQLDFSSHTNLQMVDLSYTQIPWLPK---------------FTDLKHLSRILLRGCRKLHILPSF 598 (782)
Q Consensus 534 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~---------------~~~l~~L~~L~l~~~~~~~~~~~l 598 (782)
|+.+.+... ........+..+.++............+.. +.....+..+.+...-..-....|
T Consensus 184 l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF 261 (394)
T 4gt6_A 184 LTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAF 261 (394)
T ss_dssp CSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTT
T ss_pred eeEEEECCc--ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccccee
Confidence 666655433 223333455566666666544433221110 001112222222211000011246
Q ss_pred CCCCCCCEEEcccCCCCCccccccCCCCCCCCCCCCCCccEEEecCCCCCCCCCc--CCCCCCCCEEEeecCCCccccc-
Q 039334 599 QKLHSLKILDLSEVGFSNFTEIKLKDPSTQQLPFLPCSLSELYLRKCSALEHLPL--TTALKNLELLDLSNTNLKKLPS- 675 (782)
Q Consensus 599 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~L~~L~L~~~~l~~l~~- 675 (782)
..+.+|+.+.+..+ +..++...+... .+|+.+.+.. .+..++. +..+.+|+.+.|..+ ++.+..
T Consensus 262 ~~c~~L~~i~lp~~-~~~I~~~aF~~c---------~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 262 DSCAYLASVKMPDS-VVSIGTGAFMNC---------PALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTCSSCCEEECCTT-CCEECTTTTTTC---------TTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eecccccEEecccc-cceecCcccccc---------cccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 77788888887543 223333333322 2677777753 4555543 667889999999754 666665
Q ss_pred ---cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCCCCCCCCcCEEeccCCC
Q 039334 676 ---ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPNLNDFPKLDLLDISNTG 735 (782)
Q Consensus 676 ---~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~l~~~~ 735 (782)
.+.+|+.+.+.. .++.+. .+.++++|+.+++.++.. ....+..+.+|+.+.+..+.
T Consensus 329 aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 329 AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC---------
T ss_pred HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--ehhhhhccCCCCEEEeCCCC
Confidence 567899998854 366665 488899999999987521 12225667888888877654
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=3.8e-07 Score=95.82 Aligned_cols=12 Identities=8% Similarity=0.349 Sum_probs=7.8
Q ss_pred CCCcccEEEecC
Q 039334 577 DLKHLSRILLRG 588 (782)
Q Consensus 577 ~l~~L~~L~l~~ 588 (782)
.+++|+.|.+.+
T Consensus 137 ~l~~L~~L~l~~ 148 (362)
T 2ra8_A 137 KFAHFEGLFWGD 148 (362)
T ss_dssp HHTTCSEEEECC
T ss_pred hcchhhheeecC
Confidence 456777777654
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=3.1e-05 Score=83.73 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=96.2
Q ss_pred HHHHHHhhcCC-ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhh
Q 039334 12 EKISELLKEDG-RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWE 90 (782)
Q Consensus 12 ~~l~~~l~~~~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 90 (782)
..+..+....+ ...+.|+|++|+||||||+++++.... ...-..+++++... +..++...+....
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~~------~~~~~~~~~~~~~------- 183 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK------FLNDLVDSMKEGK------- 183 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHHH------HHHHHHHHHHTTC-------
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHH------HHHHHHHHHHccc-------
Confidence 33344433333 567899999999999999999987211 11112345554332 3334443333210
Q ss_pred hhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHH--HHhhhhhhhhcCCCCCCCCcEEEEEeeccc
Q 039334 91 EQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENEL--VKEASSDFKNLLPSVQPDHLKIIMTRRTTK 168 (782)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~~~~~~~~~~p~~~~~gs~IivTTr~~~ 168 (782)
...+.+. .+.+..+|+|||++......... ....++.+. ..|..||+||....
T Consensus 184 -------------~~~~~~~-----~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-------~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 184 -------------LNEFREK-----YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELH-------DSGKQIVICSDREP 238 (440)
T ss_dssp -------------HHHHHHH-----HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-------TTTCEEEEEESSCG
T ss_pred -------------HHHHHHH-----hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHH-------HCCCeEEEEECCCH
Confidence 1112222 23366799999998642111111 111122222 35678999998742
Q ss_pred c-----C---------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHHH
Q 039334 169 Q-----S---------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAIT 217 (782)
Q Consensus 169 ~-----~---------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai~ 217 (782)
. . +..+.+++++.++-.+++.+.... -..++++...|++.+.|.+-.+.
T Consensus 239 ~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 239 QKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp GGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 1 1 146789999999999999884322 22345678889999999886544
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.19 E-value=2.6e-05 Score=80.84 Aligned_cols=179 Identities=15% Similarity=0.214 Sum_probs=97.7
Q ss_pred chhhhhhhhHHHHHHHhh----------cC--CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLK----------ED--GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~----------~~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++++..++. .. ..+-|.++|++|+|||+||+++++. ....| +.|..+.
T Consensus 19 di~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~---~~~~~---~~v~~~~----- 86 (322)
T 3eie_A 19 DVAGLE-GAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE---ANSTF---FSVSSSD----- 86 (322)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH---HTCEE---EEEEHHH-----
T ss_pred HhcChH-HHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH---HCCCE---EEEchHH-----
Confidence 678888 78888887771 11 1335889999999999999999987 22222 3333221
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccch----hHHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDE----NELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~----~~~~~~~~~~ 145 (782)
+......+ ....+...+... ...++.+|+||+++...... ..........
T Consensus 87 -----l~~~~~g~----------------~~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 140 (322)
T 3eie_A 87 -----LVSKWMGE----------------SEKLVKQLFAMA-----RENKPSIIFIDQVDALTGTRGEGESEASRRIKTE 140 (322)
T ss_dssp -----HHTTTGGG----------------HHHHHHHHHHHH-----HHTSSEEEEEECGGGGSCC------CCTHHHHHH
T ss_pred -----Hhhcccch----------------HHHHHHHHHHHH-----HhcCCeEEEechhhhhhccCCCCcchHHHHHHHH
Confidence 11111000 000011111111 24566899999998531100 0000011111
Q ss_pred hhhc---CCCCCCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhcccc--chhHHHHHHHHhcCCc
Q 039334 146 FKNL---LPSVQPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFSDHQ--VSGELFEFIAEKGRRS 212 (782)
Q Consensus 146 ~~~~---~p~~~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~i~~~c~gl 212 (782)
+... +.. ...+..||.||+.+... ...+.++..+.++-.++++..+.... ..++....|++.+.|.
T Consensus 141 ll~~l~~~~~-~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 141 LLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp HHHHHGGGGT-SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTC
T ss_pred HHHHhccccc-cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCC
Confidence 1111 111 12346677677765332 25677888899999999998544432 2345678899999884
Q ss_pred -HHHHHHH
Q 039334 213 -PAAITMI 219 (782)
Q Consensus 213 -Plai~~~ 219 (782)
+-.+..+
T Consensus 220 sg~di~~l 227 (322)
T 3eie_A 220 SGSDIAVV 227 (322)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 5444433
No 183
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.6e-05 Score=81.48 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=96.0
Q ss_pred chhhhhhhhHHHHHHHhh---c--------C--CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E--------D--GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~--------~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
||.|++ +.+++|.+.+. . + ..+=|-++|++|+|||.||+++++. .+.+| +.|..+.-.+.
T Consensus 149 dIgGl~-~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e---~~~~f---~~v~~s~l~sk 221 (405)
T 4b4t_J 149 MVGGLT-KQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH---TDCKF---IRVSGAELVQK 221 (405)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH---HTCEE---EEEEGGGGSCS
T ss_pred HhCCHH-HHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh---hCCCc---eEEEhHHhhcc
Confidence 677888 77777776662 1 1 2345789999999999999999998 33333 45554433211
Q ss_pred -----hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc-------cchh
Q 039334 69 -----NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE-------MDEN 136 (782)
Q Consensus 69 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-------~~~~ 136 (782)
...+++++.. . ....+++|++|+++..- .+..
T Consensus 222 ~vGese~~vr~lF~~-------------------------------A-----r~~aP~IIFiDEiDai~~~R~~~~~~~~ 265 (405)
T 4b4t_J 222 YIGEGSRMVRELFVM-------------------------------A-----REHAPSIIFMDEIDSIGSTRVEGSGGGD 265 (405)
T ss_dssp STTHHHHHHHHHHHH-------------------------------H-----HHTCSEEEEEESSSCCTTSCSCSSSGGG
T ss_pred ccchHHHHHHHHHHH-------------------------------H-----HHhCCceEeeecchhhccCCCCCCCCCc
Confidence 1112222211 1 24668999999988520 0111
Q ss_pred HHHHhhhhhhhhcCC-CCCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccchhH-HHHH
Q 039334 137 ELVKEASSDFKNLLP-SVQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEF 204 (782)
Q Consensus 137 ~~~~~~~~~~~~~~p-~~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~ 204 (782)
.........++..+- .....+-.||.||..+..- ...+.++..+.++-.++|+.........++ -...
T Consensus 266 ~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~ 345 (405)
T 4b4t_J 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRK 345 (405)
T ss_dssp GHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHH
Confidence 111222233322111 1112345677788777432 267888888888888888774433221111 1577
Q ss_pred HHHhcCCcH
Q 039334 205 IAEKGRRSP 213 (782)
Q Consensus 205 i~~~c~glP 213 (782)
|++.+.|.-
T Consensus 346 lA~~t~G~S 354 (405)
T 4b4t_J 346 VAEKMNGCS 354 (405)
T ss_dssp HHHHCCSCC
T ss_pred HHHHCCCCC
Confidence 888888763
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=4.1e-05 Score=79.76 Aligned_cols=165 Identities=10% Similarity=0.087 Sum_probs=97.6
Q ss_pred hhHHHHHHHhhcCCce-EEEEEcCCCchhHHHHHHHhhcccccc-------------------cccceEEEEEcc---cc
Q 039334 9 SQKEKISELLKEDGRS-TIILIGDPGLWKTWLEREISKNKVIAS-------------------SSCYTTLWINKA---EK 65 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~-vi~i~G~~G~GKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~---~~ 65 (782)
+..+.+.+.+..++.+ .+-++|+.|+|||++|+.+.+.-.... .++| ..++... +.
T Consensus 9 ~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~ 87 (334)
T 1a5t_A 9 PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSS
T ss_pred HHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCC
Confidence 5567777777776654 688999999999999999987622211 0122 1222211 01
Q ss_pred cchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhh
Q 039334 66 YSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSD 145 (782)
Q Consensus 66 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~ 145 (782)
... +..+++.+.+.. . ...+++-++|+|+++.. .. ...+.
T Consensus 88 ~~i-~~ir~l~~~~~~----------------------------~----~~~~~~kvviIdead~l--~~-----~a~na 127 (334)
T 1a5t_A 88 LGV-DAVREVTEKLNE----------------------------H----ARLGGAKVVWVTDAALL--TD-----AAANA 127 (334)
T ss_dssp BCH-HHHHHHHHHTTS----------------------------C----CTTSSCEEEEESCGGGB--CH-----HHHHH
T ss_pred CCH-HHHHHHHHHHhh----------------------------c----cccCCcEEEEECchhhc--CH-----HHHHH
Confidence 111 111222222211 1 02466789999999865 21 12222
Q ss_pred hhhcCCCCCCCCcEEEEEeecccc-------CCCeeecCCCCHHHHHHHHHhhhccccchhHHHHHHHHhcCCcHHHHHH
Q 039334 146 FKNLLPSVQPDHLKIIMTRRTTKQ-------SGKVIKFPSMSTEESLNLLKNEFSDHQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 146 ~~~~~p~~~~~gs~IivTTr~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
++..+-.. +.+..+|++|..+.. ....+.+++++.++..+.+.+.. ...++....+++.++|.|..+..
T Consensus 128 LLk~lEep-~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 128 LLKTLEEP-PAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHTSC-CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHhcCC-CCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33222221 245788888877631 11678999999999999888743 22345668899999999976543
No 185
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=0.00016 Score=77.02 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=42.7
Q ss_pred CCCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCC
Q 039334 654 TTALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPK 725 (782)
Q Consensus 654 ~~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~ 725 (782)
+..+.+|+.+.+..+ +..++. .+++|+.+.+.++ .++.++ .+.++.+|+.+.|.. .++.++. |.+|++
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred cceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence 334455555555432 333333 3455666665443 344443 356666677766643 3555554 666777
Q ss_pred cCEEeccCCCCCCC
Q 039334 726 LDLLDISNTGIREI 739 (782)
Q Consensus 726 L~~L~l~~~~l~~l 739 (782)
|+.+.+..+ ++.+
T Consensus 335 L~~i~ip~~-v~~I 347 (379)
T 4h09_A 335 LSTISYPKS-ITLI 347 (379)
T ss_dssp CCCCCCCTT-CCEE
T ss_pred CCEEEECCc-cCEE
Confidence 776666433 4443
No 186
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.16 E-value=0.00012 Score=77.83 Aligned_cols=81 Identities=16% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCCCCCCEEEeecCCCccccc----cccccceeeccccccCCCCC--CCCCCCcccEEecccCCCCCCCCC--CCCCCCc
Q 039334 655 TALKNLELLDLSNTNLKKLPS----ELCNLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCINLTELPN--LNDFPKL 726 (782)
Q Consensus 655 ~~l~~L~~L~L~~~~l~~l~~----~l~~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~--~~~l~~L 726 (782)
..+..|+.+.+..+ ++.+.. ...+|+.+.+.. .++.++ .+.++++|+.+.+.++ .++.++. |.+|++|
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCC
Confidence 34455566655443 343433 344556555533 233443 3556666666666543 4555554 6666666
Q ss_pred CEEeccCCCCCCCC
Q 039334 727 DLLDISNTGIREIP 740 (782)
Q Consensus 727 ~~L~l~~~~l~~lp 740 (782)
+.+.|..+ ++.++
T Consensus 313 ~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 313 SSVTLPTA-LKTIQ 325 (379)
T ss_dssp CEEECCTT-CCEEC
T ss_pred CEEEcCcc-ccEEH
Confidence 66666433 44443
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.16 E-value=7.1e-05 Score=76.66 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=93.9
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++.+.+++.. ...+.+.|+|++|+||||+|+++++. ....| +.+..+.-....
T Consensus 22 ~i~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~---~~~~~---~~i~~~~l~~~~ 94 (297)
T 3b9p_A 22 DIAGQD-VAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE---CSATF---LNISAASLTSKY 94 (297)
T ss_dssp GSCCCH-HHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH---TTCEE---EEEESTTTSSSS
T ss_pred HhCChH-HHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH---hCCCe---EEeeHHHHhhcc
Confidence 567777 778888877622 12457889999999999999999987 22222 334432211100
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccch----h---HHHHhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDE----N---ELVKEA 142 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~----~---~~~~~~ 142 (782)
.. .........+... ...++.+|+||+++...... . ......
T Consensus 95 ----------~~----------------~~~~~~~~~~~~~-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 143 (297)
T 3b9p_A 95 ----------VG----------------DGEKLVRALFAVA-----RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTE 143 (297)
T ss_dssp ----------CS----------------CHHHHHHHHHHHH-----HHTCSEEEEEETGGGTSBCC-----CCSHHHHHH
T ss_pred ----------cc----------------hHHHHHHHHHHHH-----HHcCCcEEEeccHHHhccccccCcchHHHHHHHH
Confidence 00 0000001111111 23566899999987531000 0 000011
Q ss_pred hhhhhhcCCCCC-CCCcEEEEEeecccc--------CCCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCC
Q 039334 143 SSDFKNLLPSVQ-PDHLKIIMTRRTTKQ--------SGKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRR 211 (782)
Q Consensus 143 ~~~~~~~~p~~~-~~gs~IivTTr~~~~--------~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~g 211 (782)
+-.....++... ..+-.||.||..... ....+.++..+.++-..++...+... ...++....+++.+.|
T Consensus 144 ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g 223 (297)
T 3b9p_A 144 FLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDG 223 (297)
T ss_dssp HHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTT
T ss_pred HHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 111112233211 123567777776522 12566777778888888887733322 2234567889999999
Q ss_pred cHH-HHH
Q 039334 212 SPA-AIT 217 (782)
Q Consensus 212 lPl-ai~ 217 (782)
.+- ++.
T Consensus 224 ~~~~~l~ 230 (297)
T 3b9p_A 224 YSGSDLT 230 (297)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 875 443
No 188
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2.6e-05 Score=82.87 Aligned_cols=169 Identities=12% Similarity=0.185 Sum_probs=94.5
Q ss_pred chhhhhhhhHHHHHHHhh---c--------C--CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E--------D--GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~--------~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
||.|++ +.+++|.+.+. . + ..+=|-++|++|+|||.||+++++. .+.+| +.|..+.-.+.
T Consensus 182 digGl~-~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e---~~~~~---~~v~~s~l~sk 254 (437)
T 4b4t_L 182 GIGGLT-EQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT---IGANF---IFSPASGIVDK 254 (437)
T ss_dssp GGCSCH-HHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH---HTCEE---EEEEGGGTCCS
T ss_pred HhCChH-HHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH---hCCCE---EEEehhhhccc
Confidence 677888 77777776662 1 1 2345889999999999999999998 33333 44554432211
Q ss_pred -----hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc-------cchh
Q 039334 69 -----NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE-------MDEN 136 (782)
Q Consensus 69 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-------~~~~ 136 (782)
...++.++. .. ....+++|++|+++..- ....
T Consensus 255 ~~Gese~~ir~~F~-------------------------------~A-----~~~~P~IifiDEiDai~~~R~~~~~~~~ 298 (437)
T 4b4t_L 255 YIGESARIIREMFA-------------------------------YA-----KEHEPCIIFMDEVDAIGGRRFSEGTSAD 298 (437)
T ss_dssp SSSHHHHHHHHHHH-------------------------------HH-----HHSCSEEEEEECCCSSSCCCSSSCCSST
T ss_pred cchHHHHHHHHHHH-------------------------------HH-----HhcCCceeeeecccccccccccCCCCcc
Confidence 111111111 11 24678999999988420 0011
Q ss_pred HHHHhhhhhhhhcCC-CCCCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhccccchhH-HHHH
Q 039334 137 ELVKEASSDFKNLLP-SVQPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEF 204 (782)
Q Consensus 137 ~~~~~~~~~~~~~~p-~~~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~ 204 (782)
......+..++..+- ..+..+-.||.||..+.... ..+.++..+.++-.++|+..........+ -...
T Consensus 299 ~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~ 378 (437)
T 4b4t_L 299 REIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEA 378 (437)
T ss_dssp THHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHH
T ss_pred hHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHH
Confidence 111222233322111 11223467888888773221 46778777888888888764433221111 1567
Q ss_pred HHHhcCCcH
Q 039334 205 IAEKGRRSP 213 (782)
Q Consensus 205 i~~~c~glP 213 (782)
|++.+.|.-
T Consensus 379 lA~~t~G~s 387 (437)
T 4b4t_L 379 AVKMSDGFN 387 (437)
T ss_dssp HHHTCCSCC
T ss_pred HHHhCCCCC
Confidence 888888763
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.13 E-value=7.4e-05 Score=78.14 Aligned_cols=173 Identities=16% Similarity=0.110 Sum_probs=98.5
Q ss_pred chhhhhhhhHHHHHHHhhc-----CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHH
Q 039334 2 DSERVASSQKEKISELLKE-----DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAIS 76 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-----~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 76 (782)
|++|-+ +.++++..++.. ...+.|.|+|++|+|||++|+++++. ....| +.+..+.......
T Consensus 30 ~iiG~~-~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~---~~~~~---~~~~~~~~~~~~~------ 96 (338)
T 3pfi_A 30 GYIGQE-SIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE---MSANI---KTTAAPMIEKSGD------ 96 (338)
T ss_dssp GCCSCH-HHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH---TTCCE---EEEEGGGCCSHHH------
T ss_pred HhCChH-HHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH---hCCCe---EEecchhccchhH------
Confidence 567777 778888888843 23456889999999999999999887 22222 2333221110000
Q ss_pred HhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcC-----C
Q 039334 77 RQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLL-----P 151 (782)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~-----p 151 (782)
....+.+ ..+..+|+||+++.............+++-.... |
T Consensus 97 --------------------------~~~~~~~-------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~ 143 (338)
T 3pfi_A 97 --------------------------LAAILTN-------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGP 143 (338)
T ss_dssp --------------------------HHHHHHT-------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC--------
T ss_pred --------------------------HHHHHHh-------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCc
Confidence 0111111 2455789999998652111111111122110000 0
Q ss_pred C-----CCCCCcEEEEEeecccc--------CCCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHHH
Q 039334 152 S-----VQPDHLKIIMTRRTTKQ--------SGKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 152 ~-----~~~~gs~IivTTr~~~~--------~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPlai 216 (782)
. ...++-++|.+|..... ....+.+++++.++..+++.+.... ....++....|++.+.|.|-.+
T Consensus 144 ~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l 223 (338)
T 3pfi_A 144 AAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIA 223 (338)
T ss_dssp -CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHH
T ss_pred cccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHH
Confidence 0 00012466767765421 2257899999999999999884332 2234577888999999999555
Q ss_pred HHHH
Q 039334 217 TMIA 220 (782)
Q Consensus 217 ~~~~ 220 (782)
..+.
T Consensus 224 ~~~l 227 (338)
T 3pfi_A 224 LRLL 227 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 190
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=5e-05 Score=79.44 Aligned_cols=172 Identities=10% Similarity=0.055 Sum_probs=96.8
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccc-eEEEEEcccccchhHHHHHHHHhhcc
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCY-TTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
++|-. +.++.+..++..++.+.+.++|+.|+||||+|+.+++.-.. ..+. .+.-+..+....... .++++..+..
T Consensus 27 ~~g~~-~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~~-ir~~i~~~~~ 102 (340)
T 1sxj_C 27 VYGQN-EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGIDV-VRNQIKDFAS 102 (340)
T ss_dssp CCSCH-HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHHH-HHTHHHHHHH
T ss_pred hcCcH-HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHHH-HHHHHHHHHh
Confidence 44544 66777888887777666899999999999999999887221 1111 122333332211111 1111111110
Q ss_pred CCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEE
Q 039334 82 ESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKII 161 (782)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~Ii 161 (782)
. ... ..+.+-++|+|+++..+....+ .+..+..- | ....++|
T Consensus 103 ~-------------------------~~~-----~~~~~~viiiDe~~~l~~~~~~----~L~~~le~-~---~~~~~~i 144 (340)
T 1sxj_C 103 T-------------------------RQI-----FSKGFKLIILDEADAMTNAAQN----ALRRVIER-Y---TKNTRFC 144 (340)
T ss_dssp B-------------------------CCS-----SSCSCEEEEETTGGGSCHHHHH----HHHHHHHH-T---TTTEEEE
T ss_pred h-------------------------ccc-----CCCCceEEEEeCCCCCCHHHHH----HHHHHHhc-C---CCCeEEE
Confidence 0 000 1244678999999865211111 12222221 2 2347788
Q ss_pred EEeeccccC-------CCeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcHHHH
Q 039334 162 MTRRTTKQS-------GKVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSPAAI 216 (782)
Q Consensus 162 vTTr~~~~~-------~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glPlai 216 (782)
++|...... ...+.+.+++.++..+.+.+... .-.-.++..+.|++.++|.+--+
T Consensus 145 l~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred EEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 887655211 14678999999988888776332 22334566778888888887643
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.09 E-value=9.9e-05 Score=79.96 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=97.6
Q ss_pred chhhhhhhhHHHHHHHhh------------cCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLK------------EDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~------------~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++.+...+. ....+-|.++|++|+|||+||+++++... .. ..+.+..+.-
T Consensus 135 di~G~~-~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~---~~~~v~~~~l---- 204 (444)
T 2zan_A 135 DVAGLE-GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDL---- 204 (444)
T ss_dssp GSCSCH-HHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SS---EEEEECCC------
T ss_pred HhcCHH-HHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CC---CEEEEeHHHH----
Confidence 577877 77888877762 11235688999999999999999999720 11 1223332211
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc----chhHHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM----DENELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~~ 145 (782)
. .....+. ...+...+... ...++.+|+||+++.... ............
T Consensus 205 --~----~~~~g~~----------------~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 257 (444)
T 2zan_A 205 --V----SKWLGES----------------EKLVKNLFQLA-----RENKPSIIFIDEIDSLCGSRSENESEAARRIKTE 257 (444)
T ss_dssp -------------C----------------CCTHHHHHHHH-----HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHH
T ss_pred --H----hhhcchH----------------HHHHHHHHHHH-----HHcCCeEEEEechHhhccCCCCccccHHHHHHHH
Confidence 1 1100100 01111111111 235678999999985310 011111122233
Q ss_pred hhhcCCCC--CCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhcccc--chhHHHHHHHHhcCCc-
Q 039334 146 FKNLLPSV--QPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFSDHQ--VSGELFEFIAEKGRRS- 212 (782)
Q Consensus 146 ~~~~~p~~--~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~i~~~c~gl- 212 (782)
++..+-.. ...+-.||.||..+... ...+.++..+.++-..+|+..+.... ..+.....|++.+.|.
T Consensus 258 lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 258 FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 337 (444)
T ss_dssp HHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCC
T ss_pred HHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 33222111 12446777788765322 25677888888888888887544322 2345678899999985
Q ss_pred HHHHHHH
Q 039334 213 PAAITMI 219 (782)
Q Consensus 213 Plai~~~ 219 (782)
+-.+..+
T Consensus 338 gadl~~l 344 (444)
T 2zan_A 338 GADISII 344 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.09 E-value=4.4e-05 Score=77.05 Aligned_cols=160 Identities=19% Similarity=0.120 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
..+.+.|+|++|+|||++|+++++. ....| +.+..+.. +.... . .....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~---~~i~~~~~-------------~~g~~-------~-----~~~~~ 111 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE---SNFPF---IKICSPDK-------------MIGFS-------E-----TAKCQ 111 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH---HTCSE---EEEECGGG-------------CTTCC-------H-----HHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH---hCCCE---EEEeCHHH-------------hcCCc-------h-----HHHHH
Confidence 3456889999999999999999997 22222 22322211 00000 0 00001
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCCC-------ccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc------
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGIN-------EMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK------ 168 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~------ 168 (782)
.+...+... ...+..+|+||+++.. ......+ ...+..+....+. ......||.||....
T Consensus 112 ~~~~~~~~~-----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~-l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 112 AMKKIFDDA-----YKSQLSCVVVDDIERLLDYVPIGPRFSNLV-LQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHH-----HTSSEEEEEECCHHHHTTCBTTTTBCCHHH-HHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHH-----HhcCCcEEEEEChhhhhccCCCChhHHHHH-HHHHHHHhcCccC-CCCCEEEEEecCChhhcchhh
Confidence 111122222 2466789999998631 0001111 1122222211111 112245677777651
Q ss_pred cC---CCeeecCCCCH-HHHHHHHHhhhccccchhHHHHHHHHhcCC------cHHHHHHHHHH
Q 039334 169 QS---GKVIKFPSMST-EESLNLLKNEFSDHQVSGELFEFIAEKGRR------SPAAITMIAKA 222 (782)
Q Consensus 169 ~~---~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~i~~~c~g------lPlai~~~~~~ 222 (782)
.. ...+.+++++. ++...++.+.. ...++....|++.+.| ++-++..+-.+
T Consensus 185 l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 185 MLNAFSTTIHVPNIATGEQLLEALELLG---NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp CTTTSSEEEECCCEEEHHHHHHHHHHHT---CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred hhcccceEEcCCCccHHHHHHHHHHhcC---CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 12 25678899988 66666666521 2234567788888877 45554444444
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.09 E-value=4.5e-05 Score=80.09 Aligned_cols=180 Identities=16% Similarity=0.202 Sum_probs=96.4
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++.|...+.. ...+-|.++|++|+|||+||+++++. ....| +.|..+
T Consensus 52 di~G~~-~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~---~~~~~---~~v~~~------ 118 (355)
T 2qp9_X 52 DVAGLE-GAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE---ANSTF---FSVSSS------ 118 (355)
T ss_dssp GSCCGG-GHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH---HTCEE---EEEEHH------
T ss_pred HhCCHH-HHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH---hCCCE---EEeeHH------
Confidence 577888 778888877621 11235889999999999999999997 22222 333322
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccc----hhHHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMD----ENELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~----~~~~~~~~~~~ 145 (782)
+ +......+. ...+...+... ...++.+|+||+++..... +..........
T Consensus 119 ~----l~~~~~g~~----------------~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 173 (355)
T 2qp9_X 119 D----LVSKWMGES----------------EKLVKQLFAMA-----RENKPSIIFIDQVDALTGTRGEGESEASRRIKTE 173 (355)
T ss_dssp H----HHSCC---C----------------HHHHHHHHHHH-----HHTSSEEEEEECGGGGTC------CTHHHHHHHH
T ss_pred H----HhhhhcchH----------------HHHHHHHHHHH-----HHcCCeEEEEechHhhcccCCCCcchHHHHHHHH
Confidence 1 111111100 00011111111 2456789999999853111 00011111122
Q ss_pred hhhc---CCCCCCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhcccc--chhHHHHHHHHhcCCc
Q 039334 146 FKNL---LPSVQPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFSDHQ--VSGELFEFIAEKGRRS 212 (782)
Q Consensus 146 ~~~~---~p~~~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~i~~~c~gl 212 (782)
++.. +.. ...+-.||.||..+... ...+.++..+.++-.++++..+.... ..+.....|++.+.|.
T Consensus 174 ll~~l~~~~~-~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 174 LLVQMNGVGN-DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHCC----CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTC
T ss_pred HHHHhhcccc-cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCC
Confidence 2111 111 12345666677665221 25677888888998899888444332 2345678899999884
Q ss_pred -HHHHHHHH
Q 039334 213 -PAAITMIA 220 (782)
Q Consensus 213 -Plai~~~~ 220 (782)
+-.|..+.
T Consensus 253 sg~dl~~l~ 261 (355)
T 2qp9_X 253 SGSDIAVVV 261 (355)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 54454433
No 194
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=4e-05 Score=81.12 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=93.8
Q ss_pred chhhhhhhhHHHHHHHhh---c----------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc-
Q 039334 2 DSERVASSQKEKISELLK---E----------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS- 67 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~----------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~- 67 (782)
||.|++ +.+++|.+.+. . ...+=|-++|++|+|||.||+++++. .+.+| +.|..+.-.+
T Consensus 210 DIgGl~-~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e---~~~~f---i~vs~s~L~sk 282 (467)
T 4b4t_H 210 DVGGCK-DQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR---TDATF---IRVIGSELVQK 282 (467)
T ss_dssp SCTTCH-HHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH---HTCEE---EEEEGGGGCCC
T ss_pred HhccHH-HHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc---cCCCe---EEEEhHHhhcc
Confidence 678888 78888877651 1 12445889999999999999999998 33333 4555433221
Q ss_pred ----hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc-------cchh
Q 039334 68 ----SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE-------MDEN 136 (782)
Q Consensus 68 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-------~~~~ 136 (782)
....++.++.. . ....+++|++|+++..- .+..
T Consensus 283 ~vGesek~ir~lF~~-------------------------------A-----r~~aP~IIfiDEiDai~~~R~~~~~~~~ 326 (467)
T 4b4t_H 283 YVGEGARMVRELFEM-------------------------------A-----RTKKACIIFFDEIDAVGGARFDDGAGGD 326 (467)
T ss_dssp SSSHHHHHHHHHHHH-------------------------------H-----HHTCSEEEEEECCTTTSBCCSSSSCGGG
T ss_pred cCCHHHHHHHHHHHH-------------------------------H-----HhcCCceEeecccccccccccCcCCCcc
Confidence 11112222211 1 24668999999987420 0111
Q ss_pred HHHHhhhhhhhhcC-CCCCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccchhH-HHHH
Q 039334 137 ELVKEASSDFKNLL-PSVQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEF 204 (782)
Q Consensus 137 ~~~~~~~~~~~~~~-p~~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~ 204 (782)
.........++..+ ......+-.||.||..+... ...+.++..+.++-.++|+..........+ -...
T Consensus 327 ~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~ 406 (467)
T 4b4t_H 327 NEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWEL 406 (467)
T ss_dssp GHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 11111222222111 11112335667788776332 267788888888888888774433221111 1467
Q ss_pred HHHhcCCc
Q 039334 205 IAEKGRRS 212 (782)
Q Consensus 205 i~~~c~gl 212 (782)
|++.+.|.
T Consensus 407 LA~~T~Gf 414 (467)
T 4b4t_H 407 ISRLCPNS 414 (467)
T ss_dssp HHHHCCSC
T ss_pred HHHHCCCC
Confidence 88888886
No 195
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=2e-05 Score=83.78 Aligned_cols=168 Identities=16% Similarity=0.203 Sum_probs=92.6
Q ss_pred chhhhhhhhHHHHHHHhh----c-------C--CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc-
Q 039334 2 DSERVASSQKEKISELLK----E-------D--GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS- 67 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~----~-------~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~- 67 (782)
||.|.+ +.+++|.+.+. . + ..+=|-++|++|+|||.||+++++. .+.+| +.|..+.-.+
T Consensus 182 digGl~-~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e---~~~~f---~~v~~s~l~~~ 254 (434)
T 4b4t_M 182 DVGGLD-KQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ---TNATF---LKLAAPQLVQM 254 (434)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH---HTCEE---EEEEGGGGCSS
T ss_pred hcCcHH-HHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH---hCCCE---EEEehhhhhhc
Confidence 677777 77888776651 1 1 2345889999999999999999998 33333 4555433221
Q ss_pred ----hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCC-------ccchh
Q 039334 68 ----SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGIN-------EMDEN 136 (782)
Q Consensus 68 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~-------~~~~~ 136 (782)
....++.++.. . ....+++|++|+++.. +.+..
T Consensus 255 ~vGese~~ir~lF~~-------------------------------A-----~~~aP~IifiDEiDal~~~R~~~~~~~~ 298 (434)
T 4b4t_M 255 YIGEGAKLVRDAFAL-------------------------------A-----KEKAPTIIFIDELDAIGTKRFDSEKSGD 298 (434)
T ss_dssp CSSHHHHHHHHHHHH-------------------------------H-----HHHCSEEEEEECTHHHHCCCSSGGGGTT
T ss_pred ccchHHHHHHHHHHH-------------------------------H-----HhcCCeEEeecchhhhhhccCCCCCCCc
Confidence 11122222211 1 2355799999998731 00111
Q ss_pred HHHHhhhhhhhhcCCCC-CCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhccccchhH-HHHH
Q 039334 137 ELVKEASSDFKNLLPSV-QPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEF 204 (782)
Q Consensus 137 ~~~~~~~~~~~~~~p~~-~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~ 204 (782)
.........++..+-.. +..+-.||.||..+..-. ..+.++..+.++-.++|+.........++ -...
T Consensus 299 ~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~ 378 (434)
T 4b4t_M 299 REVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQE 378 (434)
T ss_dssp HHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHH
T ss_pred hHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence 11122223333222211 123346667888773221 56778888888888888764332211111 1567
Q ss_pred HHHhcCCc
Q 039334 205 IAEKGRRS 212 (782)
Q Consensus 205 i~~~c~gl 212 (782)
|++.+.|.
T Consensus 379 lA~~t~G~ 386 (434)
T 4b4t_M 379 LARSTDEF 386 (434)
T ss_dssp HHHHCSSC
T ss_pred HHHhCCCC
Confidence 88888875
No 196
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=2.3e-05 Score=73.96 Aligned_cols=44 Identities=20% Similarity=0.322 Sum_probs=37.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ ++++++.+++.....+.+.|+|++|+|||++|+.+++.
T Consensus 23 ~~~g~~-~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 23 PVIGRD-TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCSCH-HHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hhhcch-HHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 456777 78899999987766667889999999999999999887
No 197
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=5.5e-05 Score=80.27 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=34.1
Q ss_pred chhhhhhhhHHHHHHHhh---c--------C--CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK---E--------D--GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~--------~--~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|++ +.+++|.+.+. . + ..+=|-++|++|+|||+||+++++.
T Consensus 173 digGl~-~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 173 DVGGLD-MQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GSCSCH-HHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HhccHH-HHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 677888 77777777662 1 1 2334889999999999999999998
No 198
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=3.7e-05 Score=80.59 Aligned_cols=168 Identities=18% Similarity=0.195 Sum_probs=91.4
Q ss_pred chhhhhhhhHHHHHHHhh---c--------C--CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc-
Q 039334 2 DSERVASSQKEKISELLK---E--------D--GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS- 67 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~--------~--~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~- 67 (782)
||.|++ +.+++|.+.+. . + ..+=|-++|++|+|||.||+++++. .+.+| +.|..+.-.+
T Consensus 183 DIgGld-~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e---~~~~f---i~v~~s~l~sk 255 (437)
T 4b4t_I 183 DIGGLE-SQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ---TSATF---LRIVGSELIQK 255 (437)
T ss_dssp GTCSCH-HHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH---HTCEE---EEEESGGGCCS
T ss_pred ecCcHH-HHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH---hCCCE---EEEEHHHhhhc
Confidence 677788 77777766551 1 1 2345889999999999999999998 33333 3444332211
Q ss_pred ----hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCc-------cchh
Q 039334 68 ----SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINE-------MDEN 136 (782)
Q Consensus 68 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~-------~~~~ 136 (782)
....++.++.. . -...+++|++|+++..- .+..
T Consensus 256 ~vGesek~ir~lF~~-------------------------------A-----r~~aP~IIfiDEiDai~~~R~~~~~~~~ 299 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKV-------------------------------A-----GENAPSIVFIDEIDAIGTKRYDSNSGGE 299 (437)
T ss_dssp SSSHHHHHHHHHHHH-------------------------------H-----HHTCSEEEEEEEESSSSCCCSCSSCSSC
T ss_pred cCchHHHHHHHHHHH-------------------------------H-----HhcCCcEEEEehhhhhcccCCCCCCCcc
Confidence 11122222211 1 24567999999987420 0001
Q ss_pred HHHHhhhhhhhhcCC-CCCCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhccccchhH-HHHH
Q 039334 137 ELVKEASSDFKNLLP-SVQPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEF 204 (782)
Q Consensus 137 ~~~~~~~~~~~~~~p-~~~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~ 204 (782)
.........++..+- .....+-.||.||..+.... ..+.++..+.++-.++|+.........++ -...
T Consensus 300 ~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~ 379 (437)
T 4b4t_I 300 REIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET 379 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHH
T ss_pred HHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence 111122222221111 11123456777887773321 45677777788888888774433221111 1567
Q ss_pred HHHhcCCc
Q 039334 205 IAEKGRRS 212 (782)
Q Consensus 205 i~~~c~gl 212 (782)
|++.+.|.
T Consensus 380 LA~~T~Gf 387 (437)
T 4b4t_I 380 LVTTKDDL 387 (437)
T ss_dssp HHHHCCSC
T ss_pred HHHhCCCC
Confidence 78888776
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=3.9e-05 Score=78.63 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=92.3
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
|++|.+ +.++++.+++.. ...+.|.|+|++|+|||+||+++++. ....| +.+..
T Consensus 16 di~G~~-~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~---~~~~~---i~v~~------ 82 (301)
T 3cf0_A 16 DIGGLE-DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE---CQANF---ISIKG------ 82 (301)
T ss_dssp GSCSCH-HHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH---TTCEE---EEECH------
T ss_pred HhCCHH-HHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH---hCCCE---EEEEh------
Confidence 577877 777777776632 23446889999999999999999987 22222 33322
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccc----------h-hH
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMD----------E-NE 137 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~----------~-~~ 137 (782)
.++... ...+. ...+...+... ....+.+|++|+++..... . ..
T Consensus 83 ~~l~~~----~~g~~----------------~~~~~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 137 (301)
T 3cf0_A 83 PELLTM----WFGES----------------EANVREIFDKA-----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 137 (301)
T ss_dssp HHHHHH----HHTTC----------------TTHHHHHHHHH-----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCH
T ss_pred HHHHhh----hcCch----------------HHHHHHHHHHH-----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHH
Confidence 222221 11111 01112222222 2456789999998842000 0 00
Q ss_pred HHHhhhhhhhhcCCCCCCCCcEEEEEeecccc----------CCCeeecCCCCHHHHHHHHHhhhccccchhH-HHHHHH
Q 039334 138 LVKEASSDFKNLLPSVQPDHLKIIMTRRTTKQ----------SGKVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEFIA 206 (782)
Q Consensus 138 ~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~~----------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~i~ 206 (782)
....-+..+.. +. ...+-.||.||..... -...+.++..+.++-.++++..+.......+ -...++
T Consensus 138 ~~~~lL~~l~~-~~--~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la 214 (301)
T 3cf0_A 138 VINQILTEMDG-MS--TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 214 (301)
T ss_dssp HHHHHHHHHHS-SC--TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH
T ss_pred HHHHHHHHhhc-cc--CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHH
Confidence 00111111111 11 1234678888876521 1156788888888888888774433211111 135667
Q ss_pred HhcCCcHHH
Q 039334 207 EKGRRSPAA 215 (782)
Q Consensus 207 ~~c~glPla 215 (782)
+.+.|.|-+
T Consensus 215 ~~~~g~sg~ 223 (301)
T 3cf0_A 215 KMTNGFSGA 223 (301)
T ss_dssp HTCSSCCHH
T ss_pred HHcCCCCHH
Confidence 777777643
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.96 E-value=1.7e-05 Score=76.08 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=34.1
Q ss_pred hHHHHHHHhhcCC----ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 10 QKEKISELLKEDG----RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 10 ~~~~l~~~l~~~~----~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
..+.+.+++.... ...+.|+|++|+|||+||+++++... .....++++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 3455566665432 16788999999999999999998722 22334566654
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.95 E-value=0.00011 Score=78.47 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=93.1
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++.+..++.. ...+-|.|+|++|+|||++|+++++. .... ++.+..+.-...
T Consensus 116 ~iiG~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~---~~~~---~~~v~~~~l~~~- 187 (389)
T 3vfd_A 116 DIAGQD-LAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE---SNAT---FFNISAASLTSK- 187 (389)
T ss_dssp GSCSCH-HHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH---TTCE---EEEECSCCC----
T ss_pred HhCCHH-HHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh---hcCc---EEEeeHHHhhcc-
Confidence 577877 788888887721 12356889999999999999999887 2222 234433221110
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc----chhHHHHhhhhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM----DENELVKEASSD 145 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~~ 145 (782)
...+. ...+...+... ...++.+|+||+++..-. ............
T Consensus 188 ---------~~g~~----------------~~~~~~~~~~a-----~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ 237 (389)
T 3vfd_A 188 ---------YVGEG----------------EKLVRALFAVA-----RELQPSIIFIDQVDSLLCERREGEHDASRRLKTE 237 (389)
T ss_dssp -------------C----------------HHHHHHHHHHH-----HHSSSEEEEEETGGGGC--------CTHHHHHHH
T ss_pred ---------ccchH----------------HHHHHHHHHHH-----HhcCCeEEEEECchhhcccCCCccchHHHHHHHH
Confidence 00000 00011111111 134457999999964200 000001111111
Q ss_pred hh---hcCCCCCCCCcEEEEEeeccccC--------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCc
Q 039334 146 FK---NLLPSVQPDHLKIIMTRRTTKQS--------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRS 212 (782)
Q Consensus 146 ~~---~~~p~~~~~gs~IivTTr~~~~~--------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~gl 212 (782)
+. ..+.......-.||.||...... ...+.++..+.++-.+++...+.. ....++....|++.+.|.
T Consensus 238 ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~ 317 (389)
T 3vfd_A 238 FLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGY 317 (389)
T ss_dssp HHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTC
T ss_pred HHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCC
Confidence 11 11111111235666677654221 246788889999999998874332 223445678899999886
Q ss_pred HH-HHHH
Q 039334 213 PA-AITM 218 (782)
Q Consensus 213 Pl-ai~~ 218 (782)
.- ++..
T Consensus 318 ~~~~l~~ 324 (389)
T 3vfd_A 318 SGSDLTA 324 (389)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 54 4433
No 202
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.94 E-value=0.00012 Score=77.49 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=33.7
Q ss_pred CeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcC-CcHHHHH
Q 039334 172 KVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGR-RSPAAIT 217 (782)
Q Consensus 172 ~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~-glPlai~ 217 (782)
..+.+++++.++..+++...+.. ....++....|++.+. |.|-.+.
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHH
Confidence 45789999999999999973322 2345567888999887 7775544
No 203
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=8.7e-07 Score=93.90 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=90.9
Q ss_pred CceEEEccCCCCCCCChhhHh---c-CCCCceEEEecCCCCCCCCcc----CCCCccEEEEecCCCCCCC-cc----c-c
Q 039334 394 EVLTLLIDGSRPCEEDHSTFF---N-LMPKLQVLAIFKPTFKSLMSS----SFERLTVLVLRNCDMLEDI-TG----I-K 459 (782)
Q Consensus 394 ~l~~L~l~~~~~~~~~~~~~~---~-~~~~L~~L~l~~~~~~~~~~~----~l~~L~~L~L~~~~~~~~~-~~----l-~ 459 (782)
.++.|++++|.+.......+. . ..++|+.|++++|.+...... .+++|+.|+|++|.+.... .. + .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 456777777766533222211 1 235777788777776432111 4567788888887664432 11 2 3
Q ss_pred CCCCCcEEEeecCCCCCC-----CchHHhcCCCCccEEEccCCCCCC-----CCC-CCCCCCCcEEEccCCCCCCC----
Q 039334 460 ELKTLSVLEISGASSLKS-----NPDELFDGMAQLQSLNLSRCPMKS-----LPS-LPKLTKLRFLILRQCSCLEY---- 524 (782)
Q Consensus 460 ~l~~L~~L~L~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~l~~-----lp~-l~~l~~L~~L~l~~~~~~~~---- 524 (782)
..++|++|+|++|. +.. ++..+ ..+++|++|++++|.++. ++. +...++|+.|++++|.+...
T Consensus 153 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 153 DQCQITTLRLSNNP-LTAAGVAVLMEGL-AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp TTCCCCEEECCSSC-CHHHHHHHHHHHH-HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred cCCccceeeCCCCC-CChHHHHHHHHHH-hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 46778888888874 433 22222 567888888888887764 233 56677888888888865432
Q ss_pred CCC-ccCCCcccEEEccCCC
Q 039334 525 MPS-LKELHELEIIDLSGAT 543 (782)
Q Consensus 525 ~~~-~~~l~~L~~L~l~~~~ 543 (782)
+.. +...++|+.|++++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 111 3456788888888886
No 204
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.90 E-value=0.00022 Score=73.97 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred HHHHHHHhhcCC--ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhh
Q 039334 11 KEKISELLKEDG--RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEE 88 (782)
Q Consensus 11 ~~~l~~~l~~~~--~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 88 (782)
...+.+++...+ .+.+.|+|++|+||||||+.+++..... . ..+++++.. ++...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHH------HHHHHHHHHHHcC------
Confidence 344555554432 3578999999999999999999872211 1 233555432 2233333332210
Q ss_pred hhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHH--HHhhhhhhhhcCCCCCCCCcEEEEEeec
Q 039334 89 WEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENEL--VKEASSDFKNLLPSVQPDHLKIIMTRRT 166 (782)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~--~~~~~~~~~~~~p~~~~~gs~IivTTr~ 166 (782)
....+.+. . .+..+|++||+.......+.. ....++.+. ..|..||+||..
T Consensus 88 --------------~~~~~~~~-----~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~-------~~~~~iii~~~~ 140 (324)
T 1l8q_A 88 --------------TINEFRNM-----Y-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-------LLEKQIILASDR 140 (324)
T ss_dssp --------------CHHHHHHH-----H-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-------HTTCEEEEEESS
T ss_pred --------------cHHHHHHH-----h-cCCCEEEEcCcccccCChHHHHHHHHHHHHHH-------HCCCeEEEEecC
Confidence 00111111 1 235799999998642111211 111122222 245678888875
Q ss_pred ccc-----C---------CCeeecCCCCHHHHHHHHHhhhcc--ccchhHHHHHHHHhcCCcHHH
Q 039334 167 TKQ-----S---------GKVIKFPSMSTEESLNLLKNEFSD--HQVSGELFEFIAEKGRRSPAA 215 (782)
Q Consensus 167 ~~~-----~---------~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~~~~~i~~~c~glPla 215 (782)
... . ...+.+++ +.++..+++...+.. ..-++++...|++.+ |..-.
T Consensus 141 ~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 141 HPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred ChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHH
Confidence 421 1 14688999 999999999884322 233457788889888 77643
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=3.5e-05 Score=72.33 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+.|+|++|+||||||+.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999987
No 206
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.80 E-value=0.00029 Score=70.28 Aligned_cols=44 Identities=30% Similarity=0.513 Sum_probs=31.6
Q ss_pred chhhhhhhhHHHHHHHh---hc---------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELL---KE---------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l---~~---------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +.++++.+.+ .. ...+-+.|+|++|+||||+|+++++.
T Consensus 13 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 13 DVAGCD-EAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GSCSCH-HHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HhcCcH-HHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 577887 5555555443 21 11234789999999999999999987
No 207
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.76 E-value=0.00012 Score=75.39 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=33.5
Q ss_pred chhhhhhhhHHHHHHHhh---------------cCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK---------------EDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---------------~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +.++.+.+++. ......+.|+|++|+|||++|+.+++.
T Consensus 32 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLK-PVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCH-HHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChH-HHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 478888 77777776652 223346899999999999999988876
No 208
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=0.00031 Score=71.60 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=88.0
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhccc-ccccccceEEEEEcccccchhHHHHHHHHhhccCCCchh
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKV-IASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIE 87 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (782)
+..+.+.+.+..++.++.-++|+.|+||||+|+.+.+.-. ....+.+ +.++..+....-.+..+++++.+....
T Consensus 4 ~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~ir~li~~~~~~p---- 78 (305)
T 2gno_A 4 DQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDIRTIKDFLNYSP---- 78 (305)
T ss_dssp CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHHHHHHHHHTSCC----
T ss_pred HHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHHHHHHHHHhhcc----
Confidence 5567788888777777888999999999999999987411 1112233 355554321112222344555543311
Q ss_pred hhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeecc
Q 039334 88 EWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTT 167 (782)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~ 167 (782)
..+++-++|+|+++.-+.. ..+.++..+-.. ++.+.+|++|.++
T Consensus 79 ----------------------------~~~~~kvviIdead~lt~~-------a~naLLk~LEep-~~~t~fIl~t~~~ 122 (305)
T 2gno_A 79 ----------------------------ELYTRKYVIVHDCERMTQQ-------AANAFLKALEEP-PEYAVIVLNTRRW 122 (305)
T ss_dssp ----------------------------SSSSSEEEEETTGGGBCHH-------HHHHTHHHHHSC-CTTEEEEEEESCG
T ss_pred ----------------------------ccCCceEEEeccHHHhCHH-------HHHHHHHHHhCC-CCCeEEEEEECCh
Confidence 2466778999999865222 222222222111 2458888888666
Q ss_pred cc-----CCCeeecCCCCHHHHHHHHHhhh
Q 039334 168 KQ-----SGKVIKFPSMSTEESLNLLKNEF 192 (782)
Q Consensus 168 ~~-----~~~~~~l~~L~~~~~~~Lf~~~~ 192 (782)
.. ..+.++++++++++..+.+.+..
T Consensus 123 ~kl~~tI~SR~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 123 HYLLPTIKSRVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred HhChHHHHceeEeCCCCCHHHHHHHHHHHh
Confidence 21 11388999999999999988854
No 209
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=1.9e-05 Score=82.81 Aligned_cols=165 Identities=16% Similarity=0.166 Sum_probs=101.3
Q ss_pred CCCCCCCCEEEcccCCCCCccccccCCC-CCCCCCCCCCCccEEEecCCCCCCCCCcCCCCCCCCEEEeecCCCccc---
Q 039334 598 FQKLHSLKILDLSEVGFSNFTEIKLKDP-STQQLPFLPCSLSELYLRKCSALEHLPLTTALKNLELLDLSNTNLKKL--- 673 (782)
Q Consensus 598 l~~l~~L~~L~l~~~~l~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~l~~L~~L~L~~~~l~~l--- 673 (782)
...+++|+.|.+.......... .+.+. ....+-..+++|++|.|++|..+ .++.+ .+++|+.|+|..+.+..-
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~i-s~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEI-SWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCG-GGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhccc-ccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHH
Confidence 4467899999997643322110 00000 00011112359999999987433 23333 378999999998887631
Q ss_pred --c-ccccccceeeccccc---c----CCCCC---CCCCCCcccEEecccCCCCCCCCC----CCCCCCcCEEeccCCCC
Q 039334 674 --P-SELCNLRKLLLNNCL---S----LTKLP---EMKGLEKLEELRLSGCINLTELPN----LNDFPKLDLLDISNTGI 736 (782)
Q Consensus 674 --~-~~l~~L~~L~L~~~~---~----l~~l~---~~~~l~~L~~L~l~~c~~l~~l~~----~~~l~~L~~L~l~~~~l 736 (782)
. ..+|+|++|+|+.+. . +..+. ....+|+|+.|.+.+|......+. ...+|+|+.|+|+.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 1 168999999986321 1 11121 224689999999999843211111 34689999999999988
Q ss_pred CC-CChhh-hCCCCCCcccEEeCCCCCCCCC
Q 039334 737 RE-IPDEI-LELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 737 ~~-lp~~~-~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
+. -+..+ ..+..++.|+.|++++|.+++.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 73 11122 2234567777899999988764
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.64 E-value=0.00031 Score=76.63 Aligned_cols=176 Identities=16% Similarity=0.206 Sum_probs=94.4
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
|++|.+ +.++++.+++.. ...+-|.|+|++|+|||++|+++++. ...+| +.+..+.
T Consensus 205 ~i~G~~-~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~---~~~~f---v~vn~~~---- 273 (489)
T 3hu3_A 205 DIGGCR-KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE---TGAFF---FLINGPE---- 273 (489)
T ss_dssp GCCSCH-HHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH---CSSEE---EEEEHHH----
T ss_pred HcCCHH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH---hCCCE---EEEEchH----
Confidence 467777 778888877732 23346889999999999999999887 22222 3443211
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc----chhHHHHhhhh
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM----DENELVKEASS 144 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~ 144 (782)
+...+..+ ........+... .++++.+|+||+++.... ...+.......
T Consensus 274 ------l~~~~~g~----------------~~~~~~~~f~~A-----~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~ 326 (489)
T 3hu3_A 274 ------IMSKLAGE----------------SESNLRKAFEEA-----EKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 326 (489)
T ss_dssp ------HHTSCTTH----------------HHHHHHHHHHHH-----HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHH
T ss_pred ------hhhhhcch----------------hHHHHHHHHHHH-----HhcCCcEEEecchhhhccccccccchHHHHHHH
Confidence 11111110 000111222222 356678999999842100 00111111122
Q ss_pred hh---hhcCCCCCCCCcEEEEEeecccc-----C-----CCeeecCCCCHHHHHHHHHhhhccccc-hhHHHHHHHHhcC
Q 039334 145 DF---KNLLPSVQPDHLKIIMTRRTTKQ-----S-----GKVIKFPSMSTEESLNLLKNEFSDHQV-SGELFEFIAEKGR 210 (782)
Q Consensus 145 ~~---~~~~p~~~~~gs~IivTTr~~~~-----~-----~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~i~~~c~ 210 (782)
.+ .+.+.. ..+-+||.||..... . ...+.++..+.++-.++++........ .+....++++.+.
T Consensus 327 ~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~ 404 (489)
T 3hu3_A 327 QLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (489)
T ss_dssp HHHHHHHHSCT--TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCT
T ss_pred HHHHHhhcccc--CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHcc
Confidence 22 222221 233667777776521 1 146788899999999999874433221 1112466778887
Q ss_pred Cc-HHHHH
Q 039334 211 RS-PAAIT 217 (782)
Q Consensus 211 gl-Plai~ 217 (782)
|. +-.+.
T Consensus 405 g~s~~dL~ 412 (489)
T 3hu3_A 405 GHVGADLA 412 (489)
T ss_dssp TCCHHHHH
T ss_pred CCcHHHHH
Confidence 75 54443
No 211
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=1.2e-05 Score=73.92 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=16.0
Q ss_pred CccEEEecCCCCCCC--CCcCCCCCCCCEEEeecC
Q 039334 636 SLSELYLRKCSALEH--LPLTTALKNLELLDLSNT 668 (782)
Q Consensus 636 ~L~~L~l~~~~~l~~--l~~~~~l~~L~~L~L~~~ 668 (782)
+|++|++++|. +++ +..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCC
Confidence 56666666664 332 122344555555555554
No 212
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=4.2e-05 Score=70.28 Aligned_cols=84 Identities=8% Similarity=0.259 Sum_probs=51.1
Q ss_pred CccEEEEecCCCCCC-CccccCCCCCcEEEeecCCCCCCCchHHhcCC----CCccEEEccCCC-CCC--CCCCCCCCCC
Q 039334 440 RLTVLVLRNCDMLED-ITGIKELKTLSVLEISGASSLKSNPDELFDGM----AQLQSLNLSRCP-MKS--LPSLPKLTKL 511 (782)
Q Consensus 440 ~L~~L~L~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~lp~~~~~~l----~~L~~L~l~~~~-l~~--lp~l~~l~~L 511 (782)
.|+.|++++|.++.. ...+.++++|++|+|++|..++.-.-..++.+ ++|++|++++|. ++. +..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 456666666654332 34567778888888888765553332223443 367888887774 653 3235567777
Q ss_pred cEEEccCCCCCC
Q 039334 512 RFLILRQCSCLE 523 (782)
Q Consensus 512 ~~L~l~~~~~~~ 523 (782)
++|++++|..++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777776443
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=0.00051 Score=74.23 Aligned_cols=174 Identities=13% Similarity=0.155 Sum_probs=88.5
Q ss_pred chhhhhhhhHHHHHHHh---hcC--------C-ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 2 DSERVASSQKEKISELL---KED--------G-RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l---~~~--------~-~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
|++|.+ +.++++.+.+ ... . .+-|.++|++|+|||+||+++++. ...+| +.++.+.-...
T Consensus 17 di~G~~-~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~---~~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 17 DVGGAE-EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE---ANVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GCCSCH-HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH---HTCCE---EEEEGGGTTTC-
T ss_pred HhCCcH-HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH---cCCCe---eeCCHHHHHHH-
Confidence 677887 6666655554 221 1 224779999999999999999987 22233 34443322110
Q ss_pred HHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCccc-------hhHHHHhh
Q 039334 70 LLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEMD-------ENELVKEA 142 (782)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~-------~~~~~~~~ 142 (782)
... .........+.+. ....+.+|+||+++..... ........
T Consensus 89 ---------~~g----------------~~~~~~r~lf~~A-----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~ 138 (476)
T 2ce7_A 89 ---------FVG----------------VGAARVRDLFAQA-----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138 (476)
T ss_dssp ---------CTT----------------HHHHHHHHHHHHH-----HHTCSEEEEEETGGGTCCC---------CHHHHH
T ss_pred ---------Hhc----------------ccHHHHHHHHHHH-----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHH
Confidence 000 0001111222233 3467899999998652100 00000111
Q ss_pred hhhhhhcCC-CCCCCCcEEEEEeeccccCC----------CeeecCCCCHHHHHHHHHhhhccccchhHH-HHHHHHhcC
Q 039334 143 SSDFKNLLP-SVQPDHLKIIMTRRTTKQSG----------KVIKFPSMSTEESLNLLKNEFSDHQVSGEL-FEFIAEKGR 210 (782)
Q Consensus 143 ~~~~~~~~p-~~~~~gs~IivTTr~~~~~~----------~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~-~~~i~~~c~ 210 (782)
...++..+- .....+-.||.||..+.... ..+.++..+.++-.++++.........+++ ...|++.+.
T Consensus 139 l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~ 218 (476)
T 2ce7_A 139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTP 218 (476)
T ss_dssp HHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCT
T ss_pred HHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcC
Confidence 222221110 00123456777777663211 367788888777777776633322211221 455888888
Q ss_pred CcH
Q 039334 211 RSP 213 (782)
Q Consensus 211 glP 213 (782)
|..
T Consensus 219 G~s 221 (476)
T 2ce7_A 219 GFV 221 (476)
T ss_dssp TCC
T ss_pred CCc
Confidence 876
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.55 E-value=0.00013 Score=65.49 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=32.9
Q ss_pred chhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.+.++.+.+.. ....-|-|+|.+|+|||++|+++++.
T Consensus 2 ~iiG~s-~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRS-EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSS-HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCC-HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 467777 777777777743 22334679999999999999999987
No 215
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.50 E-value=0.00018 Score=64.48 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=32.0
Q ss_pred chhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.+.++.+.+.. ....-|-|+|.+|+|||++|+++++.
T Consensus 5 ~~iG~s-~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNS-AAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCC-HHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCC-HHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 567877 777777777643 22334779999999999999999987
No 216
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.50 E-value=0.00051 Score=81.04 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=38.2
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++||-+ ++++++...+.....+-+.++|++|+|||++|+.+++.
T Consensus 171 ~viGr~-~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 171 PVIGRD-EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCSCH-HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCcH-HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 467887 88999999987766667889999999999999999987
No 217
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.50 E-value=0.00026 Score=63.73 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....+.|+|+.|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999987
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.44 E-value=0.0016 Score=66.88 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=35.0
Q ss_pred chhhhhhhhHHHHHHHhhc--------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE--------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.++.+...+.. .....+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 16 HIIGQA-DAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TCCSCH-HHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCChH-HHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 467887 778888877743 12346789999999999999999987
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.42 E-value=9e-05 Score=74.59 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=32.4
Q ss_pred chhhhhhhhHHHHHHHhhc------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +.++++.+.+.. ...+-+.|+|++|+|||++|+++++.
T Consensus 12 ~i~G~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 12 DMAGNE-EAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TSSSCT-TTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HhCCcH-HHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 577877 666666665531 11224679999999999999999987
No 220
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.40 E-value=0.00035 Score=79.98 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=92.2
Q ss_pred chhhhhhhhHHHHHHHhh---c----------CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 2 DSERVASSQKEKISELLK---E----------DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~----------~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
||.|++ +.+++|.+++. . ...+-|-++|++|+|||+||+++++. .+.+| +.|..+.-
T Consensus 205 dIgGl~-~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e---lg~~~---~~v~~~~l--- 274 (806)
T 3cf2_A 205 DIGGCR-KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE---TGAFF---FLINGPEI--- 274 (806)
T ss_dssp GCCSCC-TTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT---TTCEE---EEEEHHHH---
T ss_pred hhcCHH-HHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH---hCCeE---EEEEhHHh---
Confidence 577777 77777776651 1 12345889999999999999999998 33333 34543221
Q ss_pred hHHHHHHHHhhccCCCchhhhhhhhhhhhcccchhhhhhhchhhhccccCceeEEEecCCCCCcc----chhHHHHhhhh
Q 039334 69 NLLEEAISRQALCESPNIEEWEEQEEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGINEM----DENELVKEASS 144 (782)
Q Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~----~~~~~~~~~~~ 144 (782)
+..... .....+...+.+. .+..+++|+||+++..-. ...+.......
T Consensus 275 -------~sk~~g----------------ese~~lr~lF~~A-----~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~ 326 (806)
T 3cf2_A 275 -------MSKLAG----------------ESESNLRKAFEEA-----EKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 326 (806)
T ss_dssp -------HSSCTT----------------HHHHHHHHHHHHH-----TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHH
T ss_pred -------hcccch----------------HHHHHHHHHHHHH-----HHcCCeEEEEehhcccccccCCCCChHHHHHHH
Confidence 111000 0001111222222 356789999999875200 01111111222
Q ss_pred hhh---hcCCCCCCCCcEEEEEeeccccC----------CCeeecCCCCHHHHHHHHHhhhccccchhH-HHHHHHHhcC
Q 039334 145 DFK---NLLPSVQPDHLKIIMTRRTTKQS----------GKVIKFPSMSTEESLNLLKNEFSDHQVSGE-LFEFIAEKGR 210 (782)
Q Consensus 145 ~~~---~~~p~~~~~gs~IivTTr~~~~~----------~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~i~~~c~ 210 (782)
.++ .-+.. ..+--||.||...... ...+.++..+.++=.++|+..........+ -...|++++.
T Consensus 327 ~LL~~mdg~~~--~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~ 404 (806)
T 3cf2_A 327 QLLTLMDGLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (806)
T ss_dssp HHHTHHHHCCG--GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCC
T ss_pred HHHHHHhcccc--cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcC
Confidence 221 11211 2234566677765321 156788888888888888874433222222 2567888888
Q ss_pred CcH
Q 039334 211 RSP 213 (782)
Q Consensus 211 glP 213 (782)
|.-
T Consensus 405 Gfs 407 (806)
T 3cf2_A 405 GHV 407 (806)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 221
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.002 Score=65.50 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.+.++|++|+|||+||+++++.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999998
No 222
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.29 E-value=0.00038 Score=71.26 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=27.4
Q ss_pred HHHHHHHhhcC---CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKED---GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~~---~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.+.+++..- ....+.|+|++|+|||+||.++++.
T Consensus 137 ~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 137 FSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33455566542 2457889999999999999999987
No 223
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.19 E-value=0.0014 Score=71.33 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=38.1
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++||-+ ++++.+...+......-+.++|++|+|||++|+.+++.
T Consensus 181 ~iiGr~-~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 181 PVIGRS-KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCH-HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CccCcH-HHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 478888 88999999987665566789999999999999999987
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.0036 Score=62.12 Aligned_cols=21 Identities=38% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|+|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999987
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.14 E-value=0.0019 Score=66.29 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=33.4
Q ss_pred chhhhhhhhHHHHHHHhhcC---------CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKED---------GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~---------~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.++.+...+... ....+.++|++|+|||++|+.+++.
T Consensus 18 ~i~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQD-EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCH-HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHH-HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 345666 6677777777432 1247899999999999999999987
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=0.0046 Score=62.30 Aligned_cols=21 Identities=38% Similarity=0.770 Sum_probs=20.1
Q ss_pred EEEEcCCCchhHHHHHHHhhc
Q 039334 26 IILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 26 i~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|+|++|+|||||++.+++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999987
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.13 E-value=0.0045 Score=62.07 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=31.9
Q ss_pred chhhhhhhhHHHHHHHhh---cC-------C---ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK---ED-------G---RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~---~~-------~---~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
||.|.+ +.+++|.+.+. .. + .+=+.++|++|+||||||+.++..
T Consensus 11 di~g~~-~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 11 DIGALE-DIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp -CCHHH-HHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 677777 77777766541 10 1 112899999999999999999987
No 228
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.12 E-value=0.0042 Score=68.86 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=31.6
Q ss_pred chhhhhhhhHHHHHHHhh------cCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLK------EDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~------~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +-++.+.+.+. +....++.++|++|+||||||+.+++.
T Consensus 82 di~G~~-~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLE-KVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCH-HHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHH-HHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456666 45555544431 123458999999999999999999987
No 229
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.09 E-value=0.00033 Score=69.49 Aligned_cols=63 Identities=30% Similarity=0.302 Sum_probs=33.6
Q ss_pred CCCCCcEEEeecCCCCCCCch--HHhcCCCCccEEEccCCCCCCCCCCCCCC--CCcEEEccCCCCCC
Q 039334 460 ELKTLSVLEISGASSLKSNPD--ELFDGMAQLQSLNLSRCPMKSLPSLPKLT--KLRFLILRQCSCLE 523 (782)
Q Consensus 460 ~l~~L~~L~L~~~~~~~~lp~--~~~~~l~~L~~L~l~~~~l~~lp~l~~l~--~L~~L~l~~~~~~~ 523 (782)
++++|+.|+|++|. +..++. ..+..+++|++|+|++|.++.+..+..+. +|+.|++.+|.+..
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 45566666666653 443331 22255666666666666666553322222 66666666665544
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.07 E-value=0.0053 Score=66.69 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=34.4
Q ss_pred CeeecCCCCHHHHHHHHHhhh--ccccchhHHHHHHHHhc-CCcHHHHHHH
Q 039334 172 KVIKFPSMSTEESLNLLKNEF--SDHQVSGELFEFIAEKG-RRSPAAITMI 219 (782)
Q Consensus 172 ~~~~l~~L~~~~~~~Lf~~~~--~~~~~~~~~~~~i~~~c-~glPlai~~~ 219 (782)
..+.+++++.++..+.++... ......++....|+..+ .|.|..+..+
T Consensus 359 ~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 359 MIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 456899999999999998732 22334556778888888 8888654443
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.07 E-value=0.0028 Score=68.85 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=31.6
Q ss_pred chhhhhhhhHHHHHHHh---hcC--------C-ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELL---KED--------G-RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l---~~~--------~-~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +.++++.+.. ... . .+-+.|+|++|+||||||+++++.
T Consensus 32 dv~G~~-~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 32 DVAGAE-EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SSCSCH-HHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HcCCcH-HHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 678887 5555555544 221 1 123889999999999999999987
No 232
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.05 E-value=0.011 Score=61.21 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=35.5
Q ss_pred CeeecCCCCHHHHHHHHHhhhc--cccchhHHHHHHHHhcCCcHHHHHH
Q 039334 172 KVIKFPSMSTEESLNLLKNEFS--DHQVSGELFEFIAEKGRRSPAAITM 218 (782)
Q Consensus 172 ~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~~~~~i~~~c~glPlai~~ 218 (782)
....+++.+.++-.+++++... .....++.+..|++.++|.|-.+..
T Consensus 173 l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 173 IILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 4578999999999999988322 2234457889999999999965443
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.005 Score=71.76 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=37.9
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ ++++++.+.+......-+.++|++|+|||++|+.+++.
T Consensus 187 ~~iGr~-~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 187 PLIGRE-KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCSCH-HHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccCCH-HHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 467877 88899999987766667789999999999999999886
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.94 E-value=0.0072 Score=60.33 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=30.9
Q ss_pred chhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ ..+.++.+.+.. .....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEA-NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCC-HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCC-HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 356766 666666666532 22345779999999999999999987
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.92 E-value=0.0033 Score=73.24 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=35.1
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +.++++.+++.. .....|.|+|++|+||||||+.+++.
T Consensus 205 di~G~~-~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 205 DVGGCR-KQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GCCSCS-GGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HhCChH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 577777 788888887732 12346899999999999999999887
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.91 E-value=0.0034 Score=73.12 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=38.4
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++||-+ ++++++...+......-+.++|++|+|||++|+.+++.
T Consensus 181 ~iiG~~-~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 181 PVIGRS-KEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCH-HHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CccCch-HHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 478888 89999999997766666789999999999999999887
No 237
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.89 E-value=7.2e-05 Score=70.46 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCCCCCCEEEeecC-CCcc-----ccc---cccccceeeccccccCCC-----CC-CCCCCCcccEEecccCCCCCC---
Q 039334 655 TALKNLELLDLSNT-NLKK-----LPS---ELCNLRKLLLNNCLSLTK-----LP-EMKGLEKLEELRLSGCINLTE--- 716 (782)
Q Consensus 655 ~~l~~L~~L~L~~~-~l~~-----l~~---~l~~L~~L~L~~~~~l~~-----l~-~~~~l~~L~~L~l~~c~~l~~--- 716 (782)
...+.|+.|+|++| .+.. +.. ..++|++|+|++|. +.. +. .+...++|++|+|++| .++.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence 34566677777666 6552 111 34567777777663 222 11 1334567888888887 4554
Q ss_pred --CCC-CCCCCCcCEEec--cCCCCCC--CChhhhCCCCCCcccEEeCCCCCCCCC
Q 039334 717 --LPN-LNDFPKLDLLDI--SNTGIRE--IPDEILELSRPKIIREVDEETNQAEDV 765 (782)
Q Consensus 717 --l~~-~~~l~~L~~L~l--~~~~l~~--lp~~~~~l~~L~~L~~l~~~~n~~~~~ 765 (782)
+.. +...++|+.|++ ++|.|+. ...-...+...+.|++|++++|.+...
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 222 566778999999 7788772 111112234456677889999987644
No 238
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.88 E-value=0.00019 Score=67.62 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=4.9
Q ss_pred CCCceEEEecCC
Q 039334 417 MPKLQVLAIFKP 428 (782)
Q Consensus 417 ~~~L~~L~l~~~ 428 (782)
.+.|+.|++++|
T Consensus 35 ~~~L~~L~L~~n 46 (185)
T 1io0_A 35 DPDLEEVNLNNI 46 (185)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEEecCC
Confidence 334444444433
No 239
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.84 E-value=0.00095 Score=66.18 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=42.1
Q ss_pred cccccceeeccccccCCCCCC----CCCCCcccEEecccCCCCCCCCCCCCCC--CcCEEeccCCCCC-CCC-------h
Q 039334 676 ELCNLRKLLLNNCLSLTKLPE----MKGLEKLEELRLSGCINLTELPNLNDFP--KLDLLDISNTGIR-EIP-------D 741 (782)
Q Consensus 676 ~l~~L~~L~L~~~~~l~~l~~----~~~l~~L~~L~l~~c~~l~~l~~~~~l~--~L~~L~l~~~~l~-~lp-------~ 741 (782)
.+++|+.|+|++| .++.++. +..+++|+.|+|++| .++.+..+..+. +|+.|.+++|++. .+| .
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4667777777776 3444432 235677777777766 455443322222 6777777777765 333 1
Q ss_pred hhhCCCCCCcc
Q 039334 742 EILELSRPKII 752 (782)
Q Consensus 742 ~~~~l~~L~~L 752 (782)
.+..+|+|+.|
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 24455555544
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.80 E-value=0.0036 Score=63.84 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=33.8
Q ss_pred chhhhhhhhHHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ ..+.++.+.+.. .....|.|+|.+|+|||++|+.+++.
T Consensus 3 ~iig~s-~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSS-PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCS-HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECC-HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 467777 677777777643 23345779999999999999999986
No 241
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.79 E-value=0.0027 Score=73.87 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=33.8
Q ss_pred chhhhhhhhHHHHHHHhhcC-------Cc--eEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKED-------GR--STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~-------~~--~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|.+ +.++.+...+... +. ..+.++|++|+|||++|+++++.
T Consensus 492 ~viGq~-~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 492 RVIGQD-EAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TSCSCH-HHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred cCcChH-HHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 467777 7777777777421 12 26889999999999999999987
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.22 E-value=0.0019 Score=74.06 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=31.8
Q ss_pred chhhhhhhhHHHHHHHhhc----------CC---ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE----------DG---RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~----------~~---~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|+.|++ +.+++|.+.+.- .+ .+-|-++|++|+|||.+|+++++.
T Consensus 478 diggl~-~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 478 DIGGLE-DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TCCSCH-HHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HhCCHH-HHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 455666 667776665521 11 234779999999999999999998
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.01 E-value=0.0057 Score=61.62 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++.|+|++|+|||+||.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999999999875
No 244
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.96 E-value=0.013 Score=56.37 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=32.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHH
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLE 72 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 72 (782)
.++.|+|++|+|||||++.+... . -..++|++....++...+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~----~--~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLL----S--GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH----H--CSEEEEEESSCCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH----c--CCcEEEEECCCCCCHHHHH
Confidence 48999999999999999999871 1 2467888876655554443
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.87 E-value=0.0098 Score=62.81 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+.++|++|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999987
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.46 E-value=0.0085 Score=59.31 Aligned_cols=46 Identities=22% Similarity=0.173 Sum_probs=32.3
Q ss_pred CchhhhhhhhHHHHHHHh----hcC-----CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 1 MDSERVASSQKEKISELL----KED-----GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 1 ~~~~~~~~~~~~~l~~~l----~~~-----~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++.-|.+++.+.+.+-+ ..+ ...+|.|+|++|+||||+|+.+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 1 MEIQDYTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CchhhcCHHHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 566667766666555544 221 2347899999999999999999886
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.45 E-value=0.29 Score=50.58 Aligned_cols=161 Identities=9% Similarity=0.009 Sum_probs=94.8
Q ss_pred HHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhccCCCchhhhhhh
Q 039334 13 KISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALCESPNIEEWEEQ 92 (782)
Q Consensus 13 ~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 92 (782)
++.+.+...-.++.-++|+.|.||++.++.+.+.-.. ..|+....+.+....+..++... +..
T Consensus 8 ~l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~----~~~----------- 70 (343)
T 1jr3_D 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNAIFSL----CQA----------- 70 (343)
T ss_dssp THHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHHHHHH----HHH-----------
T ss_pred HHHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHHHHHH----hcC-----------
Confidence 3444454344568889999999999999999886222 22432212223333344333222 211
Q ss_pred hhhhhcccchhhhhhhchhhhccccCceeEEEecCCCC-CccchhHHHHhhhhhhhhcCCCCCCCCcEEEEEeeccc---
Q 039334 93 EEEEDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEGI-NEMDENELVKEASSDFKNLLPSVQPDHLKIIMTRRTTK--- 168 (782)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~-~~~~~~~~~~~~~~~~~~~~p~~~~~gs~IivTTr~~~--- 168 (782)
.. +.+++-++|+|++.. .+.. .++.+...+... ++++.+|++|....
T Consensus 71 -----------------~p----lf~~~kvvii~~~~~kl~~~-------~~~aLl~~le~p-~~~~~~il~~~~~~~~~ 121 (343)
T 1jr3_D 71 -----------------MS----LFASRQTLLLLLPENGPNAA-------INEQLLTLTGLL-HDDLLLIVRGNKLSKAQ 121 (343)
T ss_dssp -----------------HH----HCCSCEEEEEECCSSCCCTT-------HHHHHHHHHTTC-BTTEEEEEEESCCCTTT
T ss_pred -----------------cC----CccCCeEEEEECCCCCCChH-------HHHHHHHHHhcC-CCCeEEEEEcCCCChhh
Confidence 00 346677888999876 3112 233333333322 24577777765421
Q ss_pred ----------cCCCeeecCCCCHHHHHHHHHhhhccc--cchhHHHHHHHHhcCCcHHHHHHH
Q 039334 169 ----------QSGKVIKFPSMSTEESLNLLKNEFSDH--QVSGELFEFIAEKGRRSPAAITMI 219 (782)
Q Consensus 169 ----------~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~i~~~c~glPlai~~~ 219 (782)
.....++..+++.++......+.+... ...++....+++.++|...++...
T Consensus 122 ~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 122 ENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 122678899999998888887744332 345678889999999998776543
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.40 E-value=0.017 Score=59.60 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
-+++.|.|++|+||||||..+...... .-..++|++....++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH
Confidence 348999999999999999999887221 22356888876666543
No 249
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.35 E-value=0.0089 Score=61.49 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc-hhHHHHHHHHhhccCCCchhhhhhhhhhhhcccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS-SNLLEEAISRQALCESPNIEEWEEQEEEEDEDGK 101 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (782)
-..++|+|.+|+|||||++.+.+.-......+++ +.+-+.+... +.++ .+.+....- ....++.... .....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~~~----~~~~~~~vV-~atadep~~~-r~~~a 246 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVTEM----QRLVKGEVV-ASTFDEPASR-HVQVA 246 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHHHH----HTTCSSEEE-EECTTSCHHH-HHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHHHH----HHHhCeEEE-EeCCCCCHHH-HHHHH
Confidence 3489999999999999999987751111122333 4566665543 3333 333321000 0001110000 11111
Q ss_pred hhhhhhhchhhhccccCceeEEEecCCCC
Q 039334 102 KTEGEMATHQEENKEDKKNYHLVLDGEGI 130 (782)
Q Consensus 102 ~~~~~~~~~~~~~~l~~kr~LlVlDdv~~ 130 (782)
...-.+.+++. -+++..||++||+-.
T Consensus 247 ~~alt~AEyfr---d~G~dVLil~DslTR 272 (422)
T 3ice_A 247 EMVIEKAKRLV---EHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHH---HTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHH---hcCCCEEEEEeCchH
Confidence 22233444422 259999999999763
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.33 E-value=0.0077 Score=57.61 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKE--DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~--~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.+.+.+ ....+|+|+|+.|+|||||++.+..-
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555543 34558999999999999999999876
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.26 E-value=0.045 Score=50.86 Aligned_cols=39 Identities=18% Similarity=0.030 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAE 64 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 64 (782)
...|-|++-.|.||||.|-...-+ .-.+-..+..+.+-+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR---A~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR---AVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH---HHHTTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHH---HHHCCCeEEEEEeeC
Confidence 345666666669999999998887 222334556665544
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.24 E-value=0.12 Score=60.03 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=32.9
Q ss_pred chhhhhhhhHHHHHHHhhcC---------CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKED---------GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~---------~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.++.+...+... ....+.++|++|+|||++|+.+++.
T Consensus 459 ~v~g~~-~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 459 LVFGQD-KAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TSCSCH-HHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hccCHH-HHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 356666 6677777766321 1236889999999999999999987
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.24 E-value=0.016 Score=54.90 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhc---CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKE---DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~---~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..+++.+.+.. ....+|+|+|+.|+||||+++.+...
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345666666654 23468999999999999999999875
No 254
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.14 E-value=0.019 Score=58.85 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=28.3
Q ss_pred hHHHHHHHh----hcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 10 QKEKISELL----KEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 10 ~~~~l~~~l----~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++++.+ ..+....|.|+|+.|+||||+++.++..
T Consensus 7 L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 7 LADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344455544 3455667999999999999999999887
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.94 E-value=0.029 Score=58.12 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=32.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
-+++.|.|++|+||||||..+...... .-..++|++....++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDP 103 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCH
Confidence 348999999999999999999876222 2246789998776654
No 256
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.93 E-value=0.021 Score=55.27 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=29.5
Q ss_pred hHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 10 QKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 10 ~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+.+.+.+......+|+|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455555555566789999999999999999999877
No 257
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.90 E-value=0.038 Score=58.93 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=39.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQ 78 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 78 (782)
..++|.|.+|+|||+|+..+.+. .. +.+-+.++++-+.+.. .+.++.+++...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~-~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINN-IA-KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHH-TT-TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHH-HH-hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 47899999999999999999886 22 2345777888887665 456777776653
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.90 E-value=0.012 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999876
No 259
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.83 E-value=0.013 Score=68.89 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=32.1
Q ss_pred hhhhhhhhHHHHHHHhhcC-------C--ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKED-------G--RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~-------~--~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ +.++.+...+... + ...+.|+|++|+|||++|+.+++.
T Consensus 560 viG~~-~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 560 VVGQD-EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp SCSCH-HHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cCCcH-HHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45666 6666776666321 1 246889999999999999999987
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.81 E-value=0.035 Score=57.79 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=32.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
+++.|.|.+|+||||||..+...... .-..++|++....++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV 117 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH
Confidence 47889999999999999998876221 22467999987766543
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.79 E-value=0.014 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999987
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.78 E-value=0.013 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.7
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|+|++|+||||+|+.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 263
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.76 E-value=0.019 Score=55.26 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 9 SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 9 ~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..+++.+.+...+.++|+|+|.+|+|||||+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45556666665567889999999999999999998876
No 264
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.76 E-value=0.042 Score=55.06 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=36.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
++-|.|++|+|||||+..+...... +..-..++||+....++.. .+++++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGv 80 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGV 80 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCC
Confidence 7889999999999999998776221 1113467999987777653 2566655
No 265
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.74 E-value=0.042 Score=58.34 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=39.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHHHh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAISRQ 78 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 78 (782)
-..++|+|.+|+|||+|+..+.+. .. +.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~-~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINN-VA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH-TT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHh-hH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 347899999999999999999886 21 2334666777776655 456777777654
No 266
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.72 E-value=0.017 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999886
No 267
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.71 E-value=0.015 Score=54.05 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999876
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.68 E-value=0.027 Score=56.72 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|+|..|+||||||+.+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999998876
No 269
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.67 E-value=0.96 Score=58.93 Aligned_cols=60 Identities=28% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 13 KISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 13 ~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
.+++.+...+ +-|-++|++|+|||++|+.+... . ..+ ..+.+.++...+...+++.+-..
T Consensus 1258 ~ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~---~-~~~-~~~~infsa~ts~~~~~~~i~~~ 1317 (2695)
T 4akg_A 1258 KIFYDLLNSK-RGIILCGPPGSGKTMIMNNALRN---S-SLY-DVVGINFSKDTTTEHILSALHRH 1317 (2695)
T ss_dssp HHHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHS---C-SSC-EEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhc---C-CCC-ceEEEEeecCCCHHHHHHHHHHH
Confidence 3444444443 35668999999999999777765 1 122 34567776666655555554443
No 270
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.64 E-value=0.016 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||+|+.+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999986
No 271
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.54 E-value=0.015 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.53 E-value=0.019 Score=53.19 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhh
Q 039334 24 STIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~ 45 (782)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999988
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.48 E-value=0.019 Score=54.34 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|+|+.|+||||+++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999886
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.43 E-value=0.029 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|++|+||||+|+.+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999876
No 275
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.43 E-value=0.019 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999886
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.41 E-value=0.024 Score=53.67 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....+|.|+|++|+||||+++.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999887
No 277
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.21 E-value=0.02 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999876
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.21 E-value=0.019 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|+.|+||||+|+.+.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 279
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.15 E-value=0.025 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 358999999999999999999876
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.14 E-value=0.023 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.|+|++|+||||+++.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999876
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.13 E-value=0.023 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999876
No 282
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.11 E-value=0.025 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhcc
Q 039334 25 TIILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~ 47 (782)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998763
No 283
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.11 E-value=0.064 Score=57.11 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=33.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHHH
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAIS 76 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 76 (782)
.++|+|.+|+|||||+..+...... ...+.++++-+.+.. ...++.+++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 6899999999999999999887222 122445666665554 3445555453
No 284
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.09 E-value=0.03 Score=57.87 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=32.7
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|-+ +.++.+...+..+ .-+.++|++|+|||+||+.+.+.
T Consensus 28 ~i~g~~-~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQK-YMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCH-HHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcH-HHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHH
Confidence 456666 6666666666554 36789999999999999999886
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.08 E-value=0.028 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999886
No 286
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.08 E-value=0.047 Score=50.79 Aligned_cols=23 Identities=13% Similarity=-0.143 Sum_probs=19.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++.|+|+.|+||||++..+..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999766655
No 287
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.08 E-value=0.049 Score=52.19 Aligned_cols=25 Identities=12% Similarity=-0.329 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..++.|+|..|+||||++..+..+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH
Confidence 3458889999999999999988877
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.07 E-value=0.025 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999886
No 289
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.05 E-value=0.057 Score=55.94 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSN 69 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 69 (782)
.+++.|.|.+|+||||||..+...... .-..++|++....++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH
Confidence 348899999999999999998876221 22467999987776643
No 290
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.05 E-value=0.027 Score=52.73 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhh
Q 039334 24 STIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~ 45 (782)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.01 E-value=0.026 Score=55.71 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|+|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999886
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.00 E-value=0.024 Score=52.17 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|+.|+|||||++.++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~~ 32 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFKP 32 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSCG
T ss_pred CEEEEEECCCCCCHHHHHHHHccC
Confidence 358999999999999999976543
No 293
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.99 E-value=0.025 Score=53.80 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||+++.+.+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999886
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.98 E-value=0.024 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|.|+|++|+|||||++++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999876
No 295
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.95 E-value=0.024 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999875
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.94 E-value=0.047 Score=56.60 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....+++|+|+.|+|||||.+.+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34459999999999999999998776
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.92 E-value=0.027 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+++.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999886
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.92 E-value=0.031 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 299
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.92 E-value=0.063 Score=46.61 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=26.7
Q ss_pred EEEeecCCCc--ccccccc-ccceeeccccccCCCCC--CCCCCCcccEEecccCC
Q 039334 662 LLDLSNTNLK--KLPSELC-NLRKLLLNNCLSLTKLP--EMKGLEKLEELRLSGCI 712 (782)
Q Consensus 662 ~L~L~~~~l~--~l~~~l~-~L~~L~L~~~~~l~~l~--~~~~l~~L~~L~l~~c~ 712 (782)
.++.+++.++ .+|..+| +|++|+|++| .++.++ .+..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5555333 4666666555 344444 24455556666666553
No 300
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.89 E-value=0.072 Score=46.24 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=14.9
Q ss_pred CcEEEeecCCCCCCCchHHhcCCCCccEEEccCCC
Q 039334 464 LSVLEISGASSLKSNPDELFDGMAQLQSLNLSRCP 498 (782)
Q Consensus 464 L~~L~L~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 498 (782)
|++|+|++|. +..+|..+|..+++|++|+|++|+
T Consensus 33 l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 4444444442 444444444444444444444443
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.89 E-value=0.028 Score=53.32 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999986
No 302
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.84 E-value=0.033 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999885
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.80 E-value=0.031 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+|||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999965
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.79 E-value=0.027 Score=52.02 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|.|+|++|+||||+|+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 305
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.77 E-value=0.034 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|+|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999876
No 306
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.75 E-value=0.03 Score=53.13 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=19.9
Q ss_pred EEEEEcCCCchhHHHHHHHhh
Q 039334 25 TIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~ 45 (782)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 307
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.75 E-value=0.04 Score=57.73 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=32.7
Q ss_pred hhhhhhhhHHHHHHHhh-------------cC--CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLK-------------ED--GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~-------------~~--~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ +.++.+...+. .. ....|.++|++|+|||++|+++++.
T Consensus 17 i~G~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQE-QAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCH-HHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHH-HHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46766 67777777662 11 2346889999999999999999987
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.73 E-value=0.031 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999999876
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.73 E-value=0.031 Score=54.11 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999876
No 310
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.73 E-value=0.034 Score=56.65 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++.+||+|.|-||+||||.+..+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 45789999999999999988876654
No 311
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.70 E-value=0.034 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 312
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.70 E-value=0.028 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|.|+|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999886
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.69 E-value=0.038 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|++|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999875
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.68 E-value=0.037 Score=52.34 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....+|+|+|+.|+||||+|+.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999999875
No 315
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.61 E-value=0.036 Score=58.93 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=33.6
Q ss_pred chhhhhhhhHHHHHHHhhc--------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE--------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~--------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|-+ +.++.+...+.. -..+-|.++|++|+||||+|+.++..
T Consensus 16 ~IvGqe-~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 16 HIIGQA-DAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TCCSCH-HHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 578877 777777666521 12345889999999999999999987
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.59 E-value=0.038 Score=50.30 Aligned_cols=24 Identities=17% Similarity=-0.019 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++++|+|+.|+|||||+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999886
No 317
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.58 E-value=0.029 Score=58.48 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=29.6
Q ss_pred chhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|-+ +.++.+..........-+.|+|++|+|||++|+.+++.
T Consensus 25 ~i~G~~-~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 25 AIVGQE-DMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GSCSCH-HHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hccChH-HHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHh
Confidence 456665 34444333333222334889999999999999999986
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.56 E-value=0.036 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|++|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 319
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.56 E-value=0.16 Score=53.83 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..||.++|.+|+||||++.+++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 569999999999999999998875
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.55 E-value=0.035 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=20.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhh
Q 039334 24 STIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~ 45 (782)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999976
No 321
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.54 E-value=0.16 Score=49.53 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=36.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
.++.|+|++|+|||||++.+........ ..-..++|++....++...+ ..+++.++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g 83 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYG 83 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcC
Confidence 4899999999999999999987511110 01246789987665554433 33444444
No 322
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.51 E-value=0.038 Score=49.85 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.-.+++|+|+.|+|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999886
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.48 E-value=0.038 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999886
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.45 E-value=0.043 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3558999999999999999999876
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.44 E-value=0.04 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 326
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.42 E-value=0.043 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||+++.+...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999887
No 327
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.41 E-value=0.038 Score=52.59 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348999999999999999999876
No 328
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.41 E-value=0.043 Score=55.84 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|+|+.|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3458999999999999999999875
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.37 E-value=0.043 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+||.|.|++|+||||.|+.+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999987
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.31 E-value=0.036 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 348999999999999999999886
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.28 E-value=0.039 Score=51.98 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|.|++|+||||+|+.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 332
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.28 E-value=0.037 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999886
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.27 E-value=0.041 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.+.|++|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.25 E-value=0.046 Score=52.12 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999886
No 335
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.22 E-value=0.058 Score=50.35 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=26.7
Q ss_pred HHHHHHHhhcC-CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLKED-GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~~~-~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.+..++.+- ...-+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 1236999999999999999999886
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.20 E-value=0.047 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 337
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.19 E-value=0.15 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..||.++|++|+||||++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998876
No 338
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.18 E-value=0.036 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998876
No 339
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.16 E-value=0.035 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=17.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999876
No 340
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.16 E-value=0.047 Score=55.27 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|++|+||||+++.++.-
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 459999999999999999999876
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.16 E-value=0.045 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 342
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.15 E-value=0.065 Score=56.52 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=53.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhcccccccccc-eEEEEEccccc-chhHHHHHHHHhhccCCCc--hhhhhhhhhhhhccc
Q 039334 25 TIILIGDPGLWKTWLEREISKNKVIASSSCY-TTLWINKAEKY-SSNLLEEAISRQALCESPN--IEEWEEQEEEEDEDG 100 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~ 100 (782)
.++|.|..|+|||+|+..+.+....+..+-+ .++++-+.+.. .+.++.+++.+.=..+..- ....++.. ......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~-~~r~~a 231 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPA-IERIAT 231 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCH-HHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCH-HHHHHH
Confidence 5789999999999999999987332111111 55677676554 4566666654421000000 00000000 001112
Q ss_pred chhhhhhhchhhhccccCceeEEEecCCC
Q 039334 101 KKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
......+.++++. -.++..|+++||+-
T Consensus 232 ~~~a~tiAEyfrd--~~G~~VLl~~DslT 258 (465)
T 3vr4_D 232 PRMALTAAEYLAY--EKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH--hcCCeEEEEEcChH
Confidence 2233445555210 04899999999965
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.10 E-value=0.046 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|.|++|+||||+|+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.10 E-value=0.044 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|.|+|++|+||||+|+.+.+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999886
No 345
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.09 E-value=0.047 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+|+.+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999875
No 346
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.05 E-value=0.055 Score=53.06 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998774
No 347
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.02 E-value=0.047 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 348999999999999999999886
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.99 E-value=0.046 Score=53.87 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+++.+.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999976
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.96 E-value=0.049 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.139 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 350
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.96 E-value=0.17 Score=51.79 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
.++.|+|++|+||||||..++....... ..-..++|++....++...+. ++++.++.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 4899999999999999999887621110 002467999988877666554 34455543
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.90 E-value=0.077 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|+.|+||||+++.+...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999999876
No 352
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.89 E-value=0.047 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 7899999999999999998876
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.84 E-value=0.058 Score=53.15 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999885
No 354
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.83 E-value=0.14 Score=55.02 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc-hhHHHHHH
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS-SNLLEEAI 75 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 75 (782)
-..++|.|..|+|||+|+..+.+. .+-+.++++-+.+..+ +.++.+++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~-----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW-----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH-----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 347899999999999999998775 2336778888877664 45555554
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.78 E-value=0.052 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.73 E-value=0.057 Score=51.45 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999999886
No 357
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.72 E-value=0.07 Score=51.56 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=28.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccc--c-ccceEEEEEcccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIAS--S-SCYTTLWINKAEK 65 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~--~-~f~~~~wv~~~~~ 65 (782)
.+++|+|+.|+|||||++.++....... . ....++|+.-...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4899999999999999999987411110 1 1234678775443
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.64 E-value=0.056 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.64 E-value=0.06 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999986
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.64 E-value=0.036 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=20.6
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.62 E-value=0.061 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999886
No 362
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.61 E-value=0.068 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.-+|+|.|+.|+||||+++.+..-
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998765
No 363
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.59 E-value=0.058 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=20.5
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.56 E-value=0.056 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...|.|.|++|+||||+|+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999886
No 365
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.56 E-value=0.077 Score=57.63 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=30.3
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-+ +.++.+...+..+ .-|.++|++|+|||+||+++++.
T Consensus 24 ivGq~-~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 24 LYERS-HAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CSSCH-HHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hHHHH-HHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHH
Confidence 45555 5555555555443 36789999999999999999987
No 366
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.51 E-value=0.11 Score=54.03 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 11 KEKISELLK--EDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 11 ~~~l~~~l~--~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..++++.+. ..+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 334444443 345779999999999999999998765
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.51 E-value=0.062 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 368
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.51 E-value=0.026 Score=57.94 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHHHhhc-CCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc
Q 039334 14 ISELLKE-DGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY 66 (782)
Q Consensus 14 l~~~l~~-~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 66 (782)
+++.+.- ++-..++|+|.+|+|||+|+..+.+........+. ++++-+.+..
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 4444433 23447899999999999999998886221112233 2456666544
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.50 E-value=0.054 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+++.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999986
No 370
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.44 E-value=0.068 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++++|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999876
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.41 E-value=0.063 Score=51.71 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...|.|.|++|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999886
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.34 E-value=0.068 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999886
No 373
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.27 E-value=0.064 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 348999999999999999999876
No 374
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.23 E-value=0.074 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++++|++|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999998876
No 375
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.22 E-value=0.26 Score=50.93 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=39.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccc---cccceEEEEEcccccchhHHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIAS---SSCYTTLWINKAEKYSSNLLEEAISRQAL 80 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 80 (782)
..++.|+|++|+||||||..++....... ..-..++|++....++...+. ++++.++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 34889999999999999999887621110 023467999988877766554 3444443
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.21 E-value=0.077 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+||||+++.++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999876
No 377
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.20 E-value=0.071 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|.|.|++|+||+|.|+.+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999987
No 378
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.19 E-value=0.062 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999875
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.18 E-value=0.075 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|.|+|+.|+||||+++.+.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999886
No 380
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.17 E-value=0.065 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999876
No 381
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.15 E-value=0.072 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|+|+|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 48999999999999999999886
No 382
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.15 E-value=0.075 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.7
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999876
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.15 E-value=0.085 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~ 45 (782)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.13 E-value=0.072 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.12 E-value=0.081 Score=53.85 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|+|+|+.|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999875
No 386
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.09 E-value=0.23 Score=53.04 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=53.4
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhcccccccccce-EEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhc
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIASSSCYT-TLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDE 98 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 98 (782)
..++|+|..|+|||+|| ..+.+. . ..+. ++++-+.+.. .+.++.+++...=..+..-. ...++.. ....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~---~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~-~~r~ 236 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ---K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPA-PLLY 236 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG---G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCH-HHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHh---h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCH-HHHH
Confidence 46899999999999995 577776 2 2453 4667776655 45666666655311111000 0000000 0011
Q ss_pred ccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 99 DGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
........+.++++ -+++..||++||+-
T Consensus 237 ~a~~~a~tiAEyfr---d~G~dVLl~~Dslt 264 (502)
T 2qe7_A 237 LAPYAGCAMGEYFM---YKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHH---TTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHH---HcCCcEEEEEecHH
Confidence 11222345556632 25999999999965
No 387
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.04 E-value=0.072 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||++.+...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999998854
No 388
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.00 E-value=0.054 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=15.9
Q ss_pred eEEEEEcCCCchhHHHHHHHh-hc
Q 039334 24 STIILIGDPGLWKTWLEREIS-KN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~-~~ 46 (782)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 489999999999999999998 54
No 389
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.99 E-value=0.084 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999876
No 390
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.94 E-value=0.21 Score=53.35 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=53.6
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhcccccccccce-EEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhc
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIASSSCYT-TLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDE 98 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 98 (782)
..++|+|..|+|||+|| ..+.+. . ..+. ++++-+.+.. .+.++.+.+...=..+..-. ...++.. ....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~---~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~-~~r~ 249 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ---K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPA-SLQY 249 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT---T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCH-HHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh---h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCH-HHHH
Confidence 46899999999999995 577776 2 2453 4677776655 45666666654211100000 0000000 0011
Q ss_pred ccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 99 DGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
........+.++++ -+|+..||++||+-
T Consensus 250 ~a~~~a~tiAEyfr---d~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFA---YSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHH---TTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHH---HcCCcEEEEeccHH
Confidence 12223445556632 25999999999965
No 391
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.90 E-value=0.08 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.9
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999886
No 392
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.88 E-value=0.091 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.6
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|.|+|+.|+||||||..+++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 393
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.87 E-value=0.092 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.|+|+.|+||||||..+++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 458999999999999999999886
No 394
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.86 E-value=0.077 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999876
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.84 E-value=0.089 Score=52.72 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISK 45 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~ 45 (782)
..+|+|+|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 396
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.78 E-value=0.077 Score=52.79 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999875
No 397
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.74 E-value=0.061 Score=54.15 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+..+|+|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 398
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.73 E-value=0.078 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999876
No 399
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.72 E-value=0.31 Score=49.82 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=39.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccc---------ccc----ceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIAS---------SSC----YTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
..++.|+|.+|+||||||..++..-.... ..- ..++|++....++...+.. +++.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 34889999999999999999886521110 001 4679999888777666553 3455543
No 400
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.71 E-value=0.34 Score=50.89 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=36.8
Q ss_pred eEEEEEcCCCchhHHHHHHHhhccccc---ccccceEEEEEcccccchhHHHHHHHHhhcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIA---SSSCYTTLWINKAEKYSSNLLEEAISRQALC 81 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 81 (782)
.++.|+|++|+|||||++.++-..... ...-..++|++....++...+ +.+++.++.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 489999999999999999765331111 112345789987666655443 345565554
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.69 E-value=0.083 Score=50.62 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|.|++|+||||+|+.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999887
No 402
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.68 E-value=0.075 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.66 E-value=0.085 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999886
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.65 E-value=0.13 Score=54.47 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=30.9
Q ss_pred hhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 4 ERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+|+..+..+.+.+++ .....+++|+|+.|+||||+.+.+...
T Consensus 149 Lg~~~~~~~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 149 LGMTAHNHDNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SCCCHHHHHHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 455534444555553 445568999999999999999999876
No 405
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.63 E-value=0.17 Score=54.69 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHHH
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEAI 75 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 75 (782)
-..++|.|..|+|||+|+..+.+. . +-+.++++-+.+.. .+.++.+++
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~---~--~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKW---S--DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHH---S--SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCEEeeecCCCccHHHHHHHHHhc---c--CCCEEEEEEecccHHHHHHHHHHH
Confidence 347899999999999999999886 2 23667888777664 445555443
No 406
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.61 E-value=0.089 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|+|+.|+||||||+.+++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 407
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.54 E-value=0.086 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999886
No 408
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.54 E-value=0.12 Score=54.64 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=35.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccc-------cccc-eEEEEEccccc-chhHHHHHHHH
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIAS-------SSCY-TTLWINKAEKY-SSNLLEEAISR 77 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~-------~~f~-~~~wv~~~~~~-~~~~~~~~i~~ 77 (782)
..++|.|..|+|||+|+..+.+.....+ .+-+ .++++-+.+.. .+.++.+++.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 3678999999999999999988733210 0111 45666676554 44666666544
No 409
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.50 E-value=0.093 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999984
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.49 E-value=0.087 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.++.-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 348999999999999999999876
No 411
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.49 E-value=0.089 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999876
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.48 E-value=0.091 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 413
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.46 E-value=0.11 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||++..++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 458999999999999999999876
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.44 E-value=0.1 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|+.|+||||+++.++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 348999999999999999999886
No 415
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.43 E-value=0.087 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||++.+..-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 348999999999999999999886
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.43 E-value=0.09 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999876
No 417
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.41 E-value=0.092 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999886
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.34 E-value=0.16 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...|.|.|+.|+||||+++.+.+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999987
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.32 E-value=0.16 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.++|.+|+||||++..+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998876
No 420
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.30 E-value=0.095 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999876
No 421
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.28 E-value=0.1 Score=48.78 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.|+|+|..|+|||||.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999876
No 422
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.27 E-value=0.094 Score=51.58 Aligned_cols=24 Identities=38% Similarity=0.181 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.++.-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999875
No 423
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.27 E-value=0.11 Score=58.41 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred hhhhhhhhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 3 SERVASSQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 3 ~~~~~~~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
++|-. ..++.+...+..+ ..+.|+|++|+||||||+.+++.
T Consensus 43 i~G~~-~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 43 VIGQE-HAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCSCH-HHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHT
T ss_pred EECch-hhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhcc
Confidence 34444 4455555555544 48899999999999999999986
No 424
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.22 E-value=0.1 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.208 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999985
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.19 E-value=0.1 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|.|+.|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999887
No 426
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.16 E-value=0.1 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999875
No 427
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.15 E-value=0.099 Score=51.95 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999876
No 428
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.14 E-value=0.12 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|+|+.|+||||||..+.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999876
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.13 E-value=0.11 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.|+|+.|+||||||..+++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 468999999999999999999887
No 430
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.07 E-value=0.11 Score=52.40 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 458999999999999999998875
No 431
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.01 E-value=0.1 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999886
No 432
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.94 E-value=0.11 Score=51.10 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.3
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999876
No 433
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=90.93 E-value=0.22 Score=53.25 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhcccccccccce-EEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhc
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIASSSCYT-TLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDE 98 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 98 (782)
..++|+|..|+|||+|| ..+.+. .. .+. ++++-+.+.. .+.++.+.+...=..+..-. ...++.. ....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~---~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~-~~r~ 237 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ---QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPA-TLQY 237 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC---CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCG-GGTT
T ss_pred CEEEEecCCCCCccHHHHHHHHHh---hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCH-HHHH
Confidence 36889999999999995 577776 22 353 4677776655 34555555543211100000 0000000 0011
Q ss_pred ccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 99 DGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
........+.++++. +++..||++||+-
T Consensus 238 ~a~~~a~tiAEyfrd---~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY---RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH---TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH---cCCcEEEEEecHH
Confidence 122234455566322 5999999999965
No 434
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.91 E-value=0.11 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.177 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999886
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.88 E-value=0.1 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 47999999999999999999875
No 436
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.87 E-value=0.23 Score=52.80 Aligned_cols=54 Identities=7% Similarity=0.213 Sum_probs=37.1
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccc-cccceEEEEEccccc-chhHHHHHHHH
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIAS-SSCYTTLWINKAEKY-SSNLLEEAISR 77 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~ 77 (782)
..++|.|.+|+|||+|+..+++.....+ ..-+.++++-+.+.. .+.++.+++..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 3678899999999999999999843311 111456777776655 45666666654
No 437
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.85 E-value=0.11 Score=51.54 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.+++|+|+.|+|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 348999999999999999999875
No 438
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.84 E-value=0.11 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999876
No 439
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.82 E-value=0.19 Score=49.54 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....+++|+|+.|+|||||.+.+..-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34558999999999999999998875
No 440
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.82 E-value=0.12 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999886
No 441
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.81 E-value=0.16 Score=49.51 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=28.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEK 65 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 65 (782)
.++.|.|++|+||||||..++..... .-..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 48999999999999999888765211 1245678876443
No 442
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.78 E-value=0.22 Score=48.81 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHhhcC-C-ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 12 EKISELLKED-G-RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 12 ~~l~~~l~~~-~-~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+..|+... + ..-|.++|++|+|||.+|.++.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3455666543 2 447999999999999999999986
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.76 E-value=0.12 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 444
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.72 E-value=0.14 Score=55.00 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|..|+|||||++.+...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 458999999999999999999876
No 445
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.63 E-value=0.15 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+.|.++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999876
No 446
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.63 E-value=0.14 Score=52.13 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|.+|+||||++..++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998876
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.58 E-value=0.14 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..++.+.|.||+||||++..+...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 346788999999999999999865
No 448
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.57 E-value=0.13 Score=49.79 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=26.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcc
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKA 63 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 63 (782)
.++.|+|++|+|||||++.++..... . -..++|+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~-~~~v~~~~~~ 60 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--D-GDPCIYVTTE 60 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--H-TCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--C-CCeEEEEEcc
Confidence 48999999999999999999866221 1 1345666643
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.53 E-value=0.14 Score=54.63 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|++|+||||+|+.+.++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999886
No 450
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.52 E-value=0.18 Score=53.24 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+++|+|+.|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3558999999999999999999883
No 451
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.52 E-value=0.39 Score=51.13 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=53.3
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhcccccccccc-eEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhhhhc
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIASSSCY-TTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEEEDE 98 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 98 (782)
..++|.|..|+|||+|| ..+.+. . +.+ .++++-+.+.. .+.++.+++.+.=..+..-. ...++.. ....
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~---~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~-~~r~ 236 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ---R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESA-ALQY 236 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT---S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCH-HHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh---c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCCh-HHHH
Confidence 46899999999999996 567665 2 234 35777777665 45666666544311110000 0000000 0011
Q ss_pred ccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 99 DGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 99 ~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
........+.++++ -+++..||++||+-
T Consensus 237 ~a~~~a~tiAEyfr---d~G~dVLli~Dslt 264 (513)
T 3oaa_A 237 LAPYAGCAMGEYFR---DRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHH---HTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHH---hcCCCEEEEecChH
Confidence 12223444555532 25999999999965
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.51 E-value=0.13 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 453
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.47 E-value=0.12 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 454
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.26 E-value=0.38 Score=48.93 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=35.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQ 78 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 78 (782)
.++.|.|.+|+||||+|..++.+... .. ..++|++.. .+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~--~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD--ND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT--TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 48899999999999999999876222 22 567888764 3445566666554
No 455
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.25 E-value=0.1 Score=50.46 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999999875
No 456
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.13 E-value=0.29 Score=49.25 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINK 62 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 62 (782)
..+++++|.+|+||||++..++..... .-..+.+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEec
Confidence 458999999999999999998876221 1234456654
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.09 E-value=0.16 Score=52.92 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...+++|+|+.|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999975
No 458
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.08 E-value=0.22 Score=54.03 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|.|+|.+|+||||++.++...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 459
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.06 E-value=0.14 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999986
No 460
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.03 E-value=0.19 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999876
No 461
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.99 E-value=0.092 Score=58.70 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-|.++|++|+|||+||+++++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4889999999999999999887
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.98 E-value=0.16 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.++|+|.|+.|+||||||..++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHH
Confidence 358999999999999999999886
No 463
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.95 E-value=0.16 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 464
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.91 E-value=0.18 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999877
No 465
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.89 E-value=0.38 Score=51.49 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=53.4
Q ss_pred eEEEEEcCCCchhHHHH-HHHhhccccc---ccccc-eEEEEEccccc-chhHHHHHHHHhhccCCCch--hhhhhhhhh
Q 039334 24 STIILIGDPGLWKTWLE-REISKNKVIA---SSSCY-TTLWINKAEKY-SSNLLEEAISRQALCESPNI--EEWEEQEEE 95 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa-~~~~~~~~~~---~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~ 95 (782)
..++|+|..|+|||+|| ..+.+..... ..+.+ .++++-+.+.. .+.++.+.+...=..+..-. ...++.. .
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~-~ 241 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA-P 241 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH-H
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH-H
Confidence 46899999999999995 4666651110 01234 35777777655 45666666654211100000 0000000 0
Q ss_pred hhcccchhhhhhhchhhhccccCceeEEEecCCC
Q 039334 96 EDEDGKKTEGEMATHQEENKEDKKNYHLVLDGEG 129 (782)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~ 129 (782)
...........+.++++ -+++..||++||+-
T Consensus 242 ~r~~a~~~a~tiAEyfr---d~G~dVLli~Dslt 272 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFR---DNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHH---TTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHH---HcCCcEEEEEcCHH
Confidence 01111223345556632 25999999999965
No 466
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.86 E-value=0.17 Score=51.39 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYS 67 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 67 (782)
..++|+|+|-||+||||+|..+... ... .-..++-|+.....+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~-La~--~G~~VlliD~D~~~~ 82 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA-FSI--LGKRVLQIGCDPKHD 82 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH-HHH--TTCCEEEEEESSSCC
T ss_pred CceEEEEECCCCccHHHHHHHHHHH-HHH--CCCeEEEEeCCCCCC
Confidence 4678999999999999999988776 211 122456666543333
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.84 E-value=0.18 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|+|+|+.|+||||+++.+...
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999999875
No 468
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.83 E-value=0.39 Score=49.10 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=35.8
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHHHHHHHHhh
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
.++.|.|.+|+||||+|..++..... .-..++|++.- .+...+...++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 48899999999999999999887222 22456777653 34556666665543
No 469
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.79 E-value=0.31 Score=61.23 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhH
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNL 70 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 70 (782)
.++|-|+|++|+|||+||.++..... ..-..++|+++...++...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~ 1471 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY 1471 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH
Confidence 45899999999999999999987622 2234678998877776655
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.76 E-value=0.15 Score=50.95 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.++.|+|++|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999998864
No 471
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.74 E-value=0.21 Score=46.83 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHh-hcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 13 KISELL-KEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 13 ~l~~~l-~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++.+ ...+...|+++|.+|+|||||...+.+.
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345555 2334456899999999999999999875
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.68 E-value=0.16 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999876
No 473
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.61 E-value=0.14 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+|.|+|.+|+||||++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998876
No 474
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.56 E-value=0.16 Score=51.25 Aligned_cols=39 Identities=10% Similarity=-0.025 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKA 63 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 63 (782)
-.+++|+|++|+|||||++.++..... ..-..++|+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc
Confidence 348999999999999999999887222 111245676643
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.56 E-value=0.19 Score=48.99 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|+|.|..|+||||+++.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999987
No 476
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.55 E-value=0.17 Score=45.67 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.|+|.+|+|||||+..+.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999876
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.54 E-value=0.16 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999876
No 478
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.52 E-value=0.43 Score=62.08 Aligned_cols=73 Identities=15% Similarity=0.035 Sum_probs=47.1
Q ss_pred Cchhhhhh--hhHHHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccchhHH---HHHH
Q 039334 1 MDSERVAS--SQKEKISELLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSSNLL---EEAI 75 (782)
Q Consensus 1 ~~~~~~~~--~~~~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~---~~~i 75 (782)
||.|-|++ +...+|.+.|.. ...-+-++|+||+||++|++.++.- . .++ +.=+.+++.++..+. ++.+
T Consensus 1586 m~LVlF~dai~Hi~RI~Ril~~-p~G~~LLvGvgGsGkqSltrLaa~i---~--~~~-~fqi~~~~~Y~~~~f~eDLk~l 1658 (2695)
T 4akg_A 1586 VPMVIHESMVDHILRIDRALKQ-VQGHMMLIGASRTGKTILTRFVAWL---N--GLK-IVQPKIHRHSNLSDFDMILKKA 1658 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHS-SSEEEEEECTTTSCHHHHHHHHHHH---T--TCE-EECCCCCTTCCHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHHHHHHHcC-CCCCEEEECCCCCcHHHHHHHHHHH---h--CCe-eEEEEeeCCCCHHHHHHHHHHH
Confidence 56777773 334444444443 3557889999999999999999876 2 122 234667888876554 4444
Q ss_pred HHhhc
Q 039334 76 SRQAL 80 (782)
Q Consensus 76 ~~~~~ 80 (782)
+++.+
T Consensus 1659 ~~~aG 1663 (2695)
T 4akg_A 1659 ISDCS 1663 (2695)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 44444
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.46 E-value=0.4 Score=49.59 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhcccccccc---cceEEEEEcccccchhHHHHHHHHhh
Q 039334 23 RSTIILIGDPGLWKTWLEREISKNKVIASSS---CYTTLWINKAEKYSSNLLEEAISRQA 79 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~~ 79 (782)
-.++.|+|+.|+|||||++.++......... -..++|++....+.... +..+++..
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~ 189 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 189 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHc
Confidence 3589999999999999999998762111000 12458998765543332 33344443
No 480
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.42 E-value=0.22 Score=45.46 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999876
No 481
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.41 E-value=0.21 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.....|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999887
No 482
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.39 E-value=0.32 Score=44.93 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.2
Q ss_pred HHHHHHhhcCCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 12 EKISELLKEDGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 12 ~~l~~~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..+.+ +.....-.|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33444567999999999999999999865
No 483
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.39 E-value=0.17 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 48999999999999999999886
No 484
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.22 Score=46.38 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999887
No 485
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.30 E-value=0.18 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=21.0
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+++|+|+.|+|||||.+.+..-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 48999999999999999999875
No 486
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=89.19 E-value=0.37 Score=51.83 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=33.8
Q ss_pred eEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEccccc-chhHHHHH
Q 039334 24 STIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKY-SSNLLEEA 74 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~ 74 (782)
..++|.|..|+|||+|+..+.+. . +-+.++++-+.+.. .+.++.++
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ia~~---~--~~~v~V~~~iGER~~Ev~e~~~~ 268 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQSLAKW---S--NADVVVYVGSGERGNEMTDVLVE 268 (578)
T ss_dssp CEEEECCCTTSCHHHHHHHHHHH---S--SCSEEEEEEEEECHHHHHHHHTT
T ss_pred CEEeeeCCCCccHHHHHHHHHhc---c--CCCEEEEEEecccHHHHHHHHHH
Confidence 47899999999999999999886 2 23667788877664 33444433
No 487
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.16 E-value=0.22 Score=46.02 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhcc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~~ 47 (782)
...-.|.|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445579999999999999999998774
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.15 E-value=0.1 Score=60.60 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=33.0
Q ss_pred chhhhhhhhHHHHHHHhhc-------------CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 2 DSERVASSQKEKISELLKE-------------DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~~-------------~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
|++|.+ +.++.+...+.- .....+.++|++|+||||||+++++.
T Consensus 478 di~gl~-~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 478 DIGGLE-DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSSCCC-CHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccch-hhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 456666 677777766631 12235789999999999999999987
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.15 E-value=0.19 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999876
No 490
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.13 E-value=0.39 Score=49.44 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=32.5
Q ss_pred HhhcCCceEEEEEcCCCchhHHHHHHHhhcccccccccceEEEEEcccccch
Q 039334 17 LLKEDGRSTIILIGDPGLWKTWLEREISKNKVIASSSCYTTLWINKAEKYSS 68 (782)
Q Consensus 17 ~l~~~~~~vi~i~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 68 (782)
++.+...+++.+.|.||+||||+|..+....-.. ..-..++-|+.....++
T Consensus 12 ~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~l 62 (348)
T 3io3_A 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHNL 62 (348)
T ss_dssp HHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCHH
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCCh
Confidence 3344556788889999999999999988662100 12234566766544333
No 491
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.05 E-value=0.21 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.8
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999876
No 492
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.03 E-value=0.19 Score=45.83 Aligned_cols=23 Identities=35% Similarity=0.571 Sum_probs=20.7
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
-.|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36899999999999999999876
No 493
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.03 E-value=0.2 Score=46.04 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCchhHHHHHHHhhc
Q 039334 21 DGRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 21 ~~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.....|+|+|.+|+|||||...+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999998865
No 494
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.03 E-value=0.23 Score=46.32 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999876
No 495
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.93 E-value=0.51 Score=44.83 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=21.2
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..|.|.|+.|+||||+++.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999999887
No 496
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.92 E-value=0.21 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=20.5
Q ss_pred eEEEEEcCCCchhHHHHHHHhhc
Q 039334 24 STIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 24 ~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.+.+|+|+.|+|||||+.+++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48899999999999999998764
No 497
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.89 E-value=0.36 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhc
Q 039334 25 TIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.|.+.|.||+||||+|..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5778999999999999888877
No 498
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.88 E-value=0.2 Score=51.17 Aligned_cols=25 Identities=32% Similarity=0.215 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCchhHHHHHHHhhc
Q 039334 22 GRSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 22 ~~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999875
No 499
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.86 E-value=0.21 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCchhHHHHHHHhhcc
Q 039334 25 TIILIGDPGLWKTWLEREISKNK 47 (782)
Q Consensus 25 vi~i~G~~G~GKTtLa~~~~~~~ 47 (782)
.|.++|.+|+|||||...+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58899999999999999998763
No 500
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.82 E-value=0.25 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCchhHHHHHHHhhc
Q 039334 23 RSTIILIGDPGLWKTWLEREISKN 46 (782)
Q Consensus 23 ~~vi~i~G~~G~GKTtLa~~~~~~ 46 (782)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999999876
Done!