Your job contains 1 sequence.
>039336
IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE
EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG
RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039336
(167 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195311 - symbol:AT1G09230 species:3702 "Arabi... 538 7.2e-52 1
ZFIN|ZDB-GENE-060312-35 - symbol:rnpc3 "RNA-binding regio... 234 2.3e-20 2
RGD|1582776 - symbol:Rnpc3 "RNA-binding region (RNP1, RRM... 230 8.9e-20 2
UNIPROTKB|G3X691 - symbol:RBM41 "Uncharacterized protein"... 225 3.4e-18 1
UNIPROTKB|A8K1C9 - symbol:RNPC3 "cDNA FLJ77710" species:9... 226 5.2e-18 1
UNIPROTKB|Q96LT9 - symbol:RNPC3 "RNA-binding protein 40" ... 226 5.2e-18 1
UNIPROTKB|F1S572 - symbol:LOC100522864 "Uncharacterized p... 226 5.2e-18 1
UNIPROTKB|F1RXK8 - symbol:RBM41 "Uncharacterized protein"... 223 5.6e-18 1
UNIPROTKB|Q96IZ5 - symbol:RBM41 "RNA-binding protein 41" ... 221 9.5e-18 1
MGI|MGI:1914475 - symbol:Rnpc3 "RNA-binding region (RNP1,... 223 1.1e-17 1
UNIPROTKB|F1PU87 - symbol:RBM41 "Uncharacterized protein"... 220 1.2e-17 1
UNIPROTKB|F1MJQ8 - symbol:RNPC3 "RNA-binding protein 40" ... 221 1.8e-17 1
UNIPROTKB|Q3MHP0 - symbol:RNPC3 "RNA-binding protein 40" ... 221 1.8e-17 1
UNIPROTKB|F1PE39 - symbol:RNPC3 "Uncharacterized protein"... 218 3.9e-17 1
UNIPROTKB|F1NFC5 - symbol:RBM41 "Uncharacterized protein"... 213 7.3e-17 1
UNIPROTKB|H0YEY9 - symbol:RNPC3 "RNA-binding protein 40" ... 207 8.6e-17 1
UNIPROTKB|F1NVY1 - symbol:RNPC3 "Uncharacterized protein"... 212 1.5e-16 1
UNIPROTKB|D4A6K1 - symbol:Rbm41 "Protein Rbm41" species:1... 201 1.7e-15 1
MGI|MGI:2444923 - symbol:Rbm41 "RNA binding motif protein... 195 7.1e-15 1
DICTYBASE|DDB_G0270734 - symbol:DDB_G0270734 species:4468... 187 1.1e-13 1
ZFIN|ZDB-GENE-041114-107 - symbol:rbm41 "RNA binding moti... 170 4.5e-12 1
UNIPROTKB|H0YEB8 - symbol:RNPC3 "RNA-binding protein 40" ... 116 3.8e-07 1
POMBASE|SPBC4B4.07c - symbol:usp102 "U1 snRNP-associated ... 116 1.0e-06 1
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 101 0.00056 1
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 101 0.00056 1
>TAIR|locus:2195311 [details] [associations]
symbol:AT1G09230 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 KO:K13157 OMA:KESEYES HSSP:P09012 EMBL:AY091076
EMBL:AY122947 IPI:IPI00518543 RefSeq:NP_172394.1 UniGene:At.21135
UniGene:At.66808 ProteinModelPortal:Q8RWV8 SMR:Q8RWV8 IntAct:Q8RWV8
EnsemblPlants:AT1G09230.1 GeneID:837443 KEGG:ath:AT1G09230
TAIR:At1g09230 HOGENOM:HOG000030409 InParanoid:Q8RWV8
PhylomeDB:Q8RWV8 ProtClustDB:CLSN2679239 ArrayExpress:Q8RWV8
Genevestigator:Q8RWV8 Uniprot:Q8RWV8
Length = 442
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 107/168 (63%), Positives = 130/168 (77%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKE-LEEPNKEDSDVKPFATPEELEMGKLPP 59
IP I+K V+QIKIT K +Q E K++S ++ +EP ++DS++KPFA+ EELE G+LPP
Sbjct: 274 IPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPP 333
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKLMQE 119
++ILSLPMFKNY AGNP+ VLYIKNLAKDV+ + AK L V+LMQE
Sbjct: 334 QDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQE 393
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
GRMRGQAF+TFPSVE+AHRALNLVNG+VFKGKPMIIQFGR P AAKPN
Sbjct: 394 GRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRTPGAAKPN 441
>ZFIN|ZDB-GENE-060312-35 [details] [associations]
symbol:rnpc3 "RNA-binding region (RNP1, RRM)
containing 3" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060312-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
EMBL:BC114288 IPI:IPI00500928 RefSeq:NP_001035019.1
UniGene:Dr.79649 ProteinModelPortal:Q29RB3 GeneID:565672
KEGG:dre:565672 InParanoid:Q29RB3 NextBio:20885998
ArrayExpress:Q29RB3 Uniprot:Q29RB3
Length = 505
Score = 234 (87.4 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 54/135 (40%), Positives = 73/135 (54%)
Query: 34 EEPNKEDSDV-KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPX 92
EE +ED D+ F + ELE G+L +EI L +FK Y G P LY+KN+AK V
Sbjct: 360 EEEQEEDEDIPSEFISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEK 419
Query: 93 XXXXXXXXXXXXXDAAKCGL-TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151
+ + + LM+EGRM+GQAF+ PS A +AL NGYV K K
Sbjct: 420 DLKFIYGRYIDISSEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDK 479
Query: 152 PMIIQFGRNPAAAKP 166
P+++QF R+ AKP
Sbjct: 480 PLVVQFARS---AKP 491
Score = 35 (17.4 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 6 KKNPVLQIKITPKASQTEDKDD 27
KK+ L I+ P+ ++K+D
Sbjct: 12 KKSKTLIIRHLPRELSRDEKED 33
>RGD|1582776 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1582776
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005689
HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:AABR03021470 EMBL:AABR03019434
EMBL:AABR03018538 EMBL:AABR03019699 EMBL:BC098742 IPI:IPI00214747
RefSeq:NP_001094280.1 UniGene:Rn.17587 ProteinModelPortal:Q4G055
STRING:Q4G055 PRIDE:Q4G055 Ensembl:ENSRNOT00000023366 GeneID:691538
KEGG:rno:691538 UCSC:RGD:1582776 InParanoid:Q4G055 NextBio:743263
ArrayExpress:Q4G055 Genevestigator:Q4G055 Uniprot:Q4G055
Length = 515
Score = 230 (86.0 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
Identities = 51/131 (38%), Positives = 75/131 (57%)
Query: 33 LEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E KEDSD P F + ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V
Sbjct: 372 ITEEIKEDSDEMPSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQ 431
Query: 91 PXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
+ + ++LM+EGRM+GQAFV P+ + A +AL NGYV
Sbjct: 432 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLF 491
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 GKPMVVQFARS 502
Score = 34 (17.0 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 2 PVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSD 42
PV KK ++ I+ +KD + EE N + D
Sbjct: 314 PVGNKK---IEFNISTNVPAALNKDLETEQNNEEKNSDSPD 351
>UNIPROTKB|G3X691 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:DAAA02071483
EMBL:DAAA02071484 EMBL:DAAA02071485 Ensembl:ENSBTAT00000001264
Uniprot:G3X691
Length = 413
Score = 225 (84.3 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 50/126 (39%), Positives = 71/126 (56%)
Query: 36 PNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXX 95
P K ++ F +E++ +L EEI +PMF +Y G P VLY+KNL+ P
Sbjct: 268 PKKLTQPIE-FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLS----PRVTE 322
Query: 96 XXXXXXXXXXDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
K G ++ M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++
Sbjct: 323 RDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILV 381
Query: 155 IQFGRN 160
I+FG+N
Sbjct: 382 IEFGKN 387
>UNIPROTKB|A8K1C9 [details] [associations]
symbol:RNPC3 "cDNA FLJ77710" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000007217
HOVERGEN:HBG057088 EMBL:BX322653 EMBL:AC095032 EMBL:AC105272
UniGene:Hs.632423 HGNC:HGNC:18666 ChiTaRS:RNPC3 EMBL:AK289844
IPI:IPI00923554 SMR:A8K1C9 STRING:A8K1C9 Ensembl:ENST00000524631
UCSC:uc010oum.1 Uniprot:A8K1C9
Length = 516
Score = 226 (84.6 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 50/132 (37%), Positives = 75/132 (56%)
Query: 32 ELEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 371 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 430
Query: 90 IPXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 431 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 490
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 491 FGKPMVVQFARS 502
>UNIPROTKB|Q96LT9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IC] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097
GO:GO:0005689 CTD:55599 eggNOG:NOG128363 HOVERGEN:HBG057088
KO:K13157 OrthoDB:EOG46DM34 EMBL:AY099329 EMBL:BK005195
EMBL:AB058742 EMBL:AK000015 EMBL:AK057799 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 EMBL:BC010697 EMBL:AL137730
IPI:IPI00514393 PIR:T46396 RefSeq:NP_060089.1 UniGene:Hs.632423
PDB:3EGN PDBsum:3EGN ProteinModelPortal:Q96LT9 SMR:Q96LT9
IntAct:Q96LT9 MINT:MINT-1180654 STRING:Q96LT9 PhosphoSite:Q96LT9
DMDM:74760946 PaxDb:Q96LT9 PeptideAtlas:Q96LT9 PRIDE:Q96LT9
DNASU:55599 Ensembl:ENST00000423855 Ensembl:ENST00000531883
Ensembl:ENST00000533099 GeneID:55599 KEGG:hsa:55599 UCSC:uc010oul.1
GeneCards:GC01P104068 HGNC:HGNC:18666 neXtProt:NX_Q96LT9
PharmGKB:PA134865246 InParanoid:Q96LT9 OMA:KESEYES ChiTaRS:RNPC3
EvolutionaryTrace:Q96LT9 GenomeRNAi:55599 NextBio:60134
ArrayExpress:Q96LT9 Bgee:Q96LT9 CleanEx:HS_RNPC3
Genevestigator:Q96LT9 Uniprot:Q96LT9
Length = 517
Score = 226 (84.6 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 50/132 (37%), Positives = 75/132 (56%)
Query: 32 ELEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
>UNIPROTKB|F1S572 [details] [associations]
symbol:LOC100522864 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:CU469487 EMBL:CU571185
Ensembl:ENSSSCT00000026127 Ensembl:ENSSSCT00000031693
Uniprot:F1S572
Length = 517
Score = 226 (84.6 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 28 SVAKELEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNL 85
S+A+E+ KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNL
Sbjct: 372 SIAEEI----KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNL 427
Query: 86 AKDVIPXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144
AK V + + ++LM+EGRM+GQAF+ P+ + A +AL N
Sbjct: 428 AKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 487
Query: 145 GYVFKGKPMIIQFGRN 160
GYV GKPM++QF R+
Sbjct: 488 GYVLFGKPMVVQFARS 503
>UNIPROTKB|F1RXK8 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 CTD:55285 OMA:REMEIEN EMBL:FP236674
EMBL:FP015867 RefSeq:XP_003135343.2 Ensembl:ENSSSCT00000013728
GeneID:100516772 KEGG:ssc:100516772 Uniprot:F1RXK8
Length = 412
Score = 223 (83.6 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 50/126 (39%), Positives = 71/126 (56%)
Query: 36 PNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXX 95
P K ++ F +E++ +L EEI +PMF +Y G P VLY+KNL+ P
Sbjct: 268 PKKLTQPIE-FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLS----PRVTE 322
Query: 96 XXXXXXXXXXDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
K G ++ M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++
Sbjct: 323 KDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILV 381
Query: 155 IQFGRN 160
I+FG+N
Sbjct: 382 IEFGKN 387
>UNIPROTKB|Q96IZ5 [details] [associations]
symbol:RBM41 "RNA-binding protein 41" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL390039 EMBL:AK001878
EMBL:AK023732 EMBL:BC006986 IPI:IPI00306343 IPI:IPI00643333
IPI:IPI00844169 RefSeq:NP_001164551.1 RefSeq:NP_060771.3
UniGene:Hs.139053 PDB:2CPX PDBsum:2CPX ProteinModelPortal:Q96IZ5
SMR:Q96IZ5 IntAct:Q96IZ5 MINT:MINT-1449430 PhosphoSite:Q96IZ5
DMDM:117949772 PaxDb:Q96IZ5 PRIDE:Q96IZ5 DNASU:55285
Ensembl:ENST00000203616 Ensembl:ENST00000372479
Ensembl:ENST00000372487 Ensembl:ENST00000495517 GeneID:55285
KEGG:hsa:55285 UCSC:uc004emy.2 CTD:55285 GeneCards:GC0XM106307
H-InvDB:HIX0020243 HGNC:HGNC:25617 HPA:HPA042881 neXtProt:NX_Q96IZ5
PharmGKB:PA145148155 eggNOG:NOG147711 HOGENOM:HOG000231401
HOVERGEN:HBG057264 InParanoid:Q96IZ5 OMA:REMEIEN OrthoDB:EOG4JT05J
PhylomeDB:Q96IZ5 EvolutionaryTrace:Q96IZ5 GenomeRNAi:55285
NextBio:59448 ArrayExpress:Q96IZ5 Bgee:Q96IZ5 CleanEx:HS_RBM41
Genevestigator:Q96IZ5 GermOnline:ENSG00000089682 Uniprot:Q96IZ5
Length = 413
Score = 221 (82.9 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/126 (39%), Positives = 71/126 (56%)
Query: 36 PNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXX 95
P K ++ F +E++ +L EEI +PMF +Y G P VLY+KNL+ P
Sbjct: 268 PKKLTQPIE-FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLS----PRVTE 322
Query: 96 XXXXXXXXXXDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
K G ++ M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++
Sbjct: 323 RDLVSLFARFQEKK-GPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILV 381
Query: 155 IQFGRN 160
I+FG+N
Sbjct: 382 IEFGKN 387
>MGI|MGI:1914475 [details] [associations]
symbol:Rnpc3 "RNA-binding region (RNP1, RRM) containing 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1914475 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005689 HSSP:Q96IZ5 CTD:55599 eggNOG:NOG128363
HOGENOM:HOG000007217 HOVERGEN:HBG057088 KO:K13157 OrthoDB:EOG46DM34
OMA:KESEYES EMBL:AK013288 EMBL:AK134241 EMBL:AK161063 EMBL:BC016603
EMBL:BC043695 EMBL:AK173272 IPI:IPI00831482 IPI:IPI00831582
RefSeq:NP_001033785.1 RefSeq:NP_080319.2 UniGene:Mm.316928
ProteinModelPortal:Q3UZ01 SMR:Q3UZ01 STRING:Q3UZ01
PhosphoSite:Q3UZ01 PRIDE:Q3UZ01 Ensembl:ENSMUST00000092154
Ensembl:ENSMUST00000106535 Ensembl:ENSMUST00000106536 GeneID:67225
KEGG:mmu:67225 UCSC:uc008rbd.1 UCSC:uc008rbf.1
GeneTree:ENSGT00530000063786 InParanoid:Q3UZ01 NextBio:323936
Bgee:Q3UZ01 CleanEx:MM_RNPC3 Genevestigator:Q3UZ01 Uniprot:Q3UZ01
Length = 514
Score = 223 (83.6 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 50/131 (38%), Positives = 75/131 (57%)
Query: 33 LEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V
Sbjct: 371 ITEEITEDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQ 430
Query: 91 PXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
+ + ++LM+EGRM+GQAFV P+ + A +AL NGYV
Sbjct: 431 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLF 490
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 491 GKPMVVQFARS 501
>UNIPROTKB|F1PU87 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:AAEX03026749
Ensembl:ENSCAFT00000037287 Uniprot:F1PU87
Length = 413
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 36 PNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXX 95
P K ++ F +E++ +L EEI +PMF +Y G P VLY+KNL+ P
Sbjct: 268 PKKLTQPIE-FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLS----PRVTE 322
Query: 96 XXXXXXXXXXDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
K G ++ + GRMRGQAF+TFP+ E+A +AL+LVNGY +GK ++
Sbjct: 323 RDLVSLFARFQEKK-GPPIQFRIMTGRMRGQAFITFPNKEIAWQALHLVNGYKLRGKILV 381
Query: 155 IQFGRN 160
I+FG+N
Sbjct: 382 IEFGKN 387
>UNIPROTKB|F1MJQ8 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
IPI:IPI00706852 UniGene:Bt.6645 OMA:KESEYES
GeneTree:ENSGT00530000063786 EMBL:DAAA02007691
Ensembl:ENSBTAT00000025416 Uniprot:F1MJQ8
Length = 516
Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 49/131 (37%), Positives = 74/131 (56%)
Query: 33 LEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 ITEEIKDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQ 431
Query: 91 PXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 491
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 GKPMVVQFARS 502
>UNIPROTKB|Q3MHP0 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC105165 IPI:IPI00706852
RefSeq:NP_001070585.1 UniGene:Bt.6645 HSSP:Q96IZ5
ProteinModelPortal:Q3MHP0 PRIDE:Q3MHP0 GeneID:768060
KEGG:bta:768060 CTD:55599 eggNOG:NOG128363 HOGENOM:HOG000007217
HOVERGEN:HBG057088 InParanoid:Q3MHP0 KO:K13157 OrthoDB:EOG46DM34
NextBio:20918415 Uniprot:Q3MHP0
Length = 516
Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 49/131 (37%), Positives = 74/131 (56%)
Query: 33 LEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 ITEEIKDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQ 431
Query: 91 PXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 491
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 GKPMVVQFARS 502
>UNIPROTKB|F1PE39 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
CTD:55599 KO:K13157 OMA:KESEYES GeneTree:ENSGT00530000063786
EMBL:AAEX03004757 EMBL:AAEX03004758 RefSeq:XP_547257.3
Ensembl:ENSCAFT00000031786 GeneID:490136 KEGG:cfa:490136
Uniprot:F1PE39
Length = 518
Score = 218 (81.8 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 49/131 (37%), Positives = 73/131 (55%)
Query: 33 LEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E KED D P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 374 ITEEIKEDCDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQ 433
Query: 91 PXXXXXXXXXXXX-XXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 434 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 493
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 494 GKPMVVQFARS 504
>UNIPROTKB|F1NFC5 [details] [associations]
symbol:RBM41 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063786 OMA:REMEIEN EMBL:AADN02013197
EMBL:AADN02013196 IPI:IPI00597936 Ensembl:ENSGALT00000007718
Uniprot:F1NFC5
Length = 412
Score = 213 (80.0 bits), Expect = 7.3e-17, P = 7.3e-17
Identities = 47/120 (39%), Positives = 66/120 (55%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXXXX 105
F EE+ +L EE+ S+P F +Y G P VLY+KNL P
Sbjct: 280 FIPEEEIRKSRLSEEELRSIPRFSSYHPGEPNKVLYVKNLG----PRVTMKDMVSLFARF 335
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN--PAA 163
+ +L+ GRMRGQAF+TFP ++ A A+ LVNGY +GKPM+I+FG++ P+A
Sbjct: 336 QQDSTPIQFRLLS-GRMRGQAFITFPDIQSAQDAMLLVNGYRLQGKPMVIEFGKSKGPSA 394
>UNIPROTKB|H0YEY9 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 HGNC:HGNC:18666 ChiTaRS:RNPC3
Ensembl:ENST00000531127 Uniprot:H0YEY9
Length = 128
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 43/111 (38%), Positives = 65/111 (58%)
Query: 51 ELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXX-XXDAAK 109
ELE G++ EE+ +L +F++Y G P +Y+KNLAK V + +
Sbjct: 4 ELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQR 63
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 64 IMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 114
>UNIPROTKB|F1NVY1 [details] [associations]
symbol:RNPC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
OMA:KESEYES GeneTree:ENSGT00530000063786 EMBL:AADN02012921
IPI:IPI00590374 Ensembl:ENSGALT00000008292 Uniprot:F1NVY1
Length = 490
Score = 212 (79.7 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 47/128 (36%), Positives = 69/128 (53%)
Query: 35 EPNKEDSDV-KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXX 93
E +ED ++ F + ELE +L EE+ +FKNY G P +Y+KNLAK V
Sbjct: 349 ETEEEDDEIPSEFISRRELEKNRLSREEMEKFSVFKNYEPGEPNCRIYVKNLAKQVQEKD 408
Query: 94 XXXXXXXXXXXXDAAKCGL-TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV KP
Sbjct: 409 LKFIFGRYVDFQSVLERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKP 468
Query: 153 MIIQFGRN 160
M++QF R+
Sbjct: 469 MVVQFARS 476
>UNIPROTKB|D4A6K1 [details] [associations]
symbol:Rbm41 "Protein Rbm41" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951350
ProteinModelPortal:D4A6K1 Ensembl:ENSRNOT00000065141 RGD:1590579
ArrayExpress:D4A6K1 Uniprot:D4A6K1
Length = 425
Score = 201 (75.8 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 45/125 (36%), Positives = 68/125 (54%)
Query: 36 PNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXX 95
P K ++ F +E++ +L EEI ++PMF +Y G P VLY+KNL+ P
Sbjct: 280 PKKLKQPIE-FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLS----PRVKE 334
Query: 96 XXXXXXXXXXDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
K L M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I
Sbjct: 335 RDLISLFARFQEKKGPLIQFQMMTGRMRGQAFITFPNKDIAWQALHQINGYKLYGKILVI 394
Query: 156 QFGRN 160
+F ++
Sbjct: 395 EFAKS 399
>MGI|MGI:2444923 [details] [associations]
symbol:Rbm41 "RNA binding motif protein 41" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2444923 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q96IZ5 GeneTree:ENSGT00530000063786 CTD:55285 eggNOG:NOG147711
HOGENOM:HOG000231401 HOVERGEN:HBG057264 EMBL:AK040213 EMBL:AK084514
EMBL:AK084629 EMBL:AK164496 EMBL:AK166005 EMBL:AL672270
EMBL:BC037024 IPI:IPI00170384 IPI:IPI00460072 IPI:IPI00652894
IPI:IPI00798583 RefSeq:NP_001165618.1 RefSeq:NP_001165619.1
RefSeq:NP_705814.1 UniGene:Mm.256670 ProteinModelPortal:Q8JZV4
SMR:Q8JZV4 PhosphoSite:Q8JZV4 PRIDE:Q8JZV4
Ensembl:ENSMUST00000033810 Ensembl:ENSMUST00000087400
Ensembl:ENSMUST00000113007 GeneID:237073 KEGG:mmu:237073
UCSC:uc009ukp.2 UCSC:uc009ukq.2 UCSC:uc012hpl.1 NextBio:383213
Bgee:Q8JZV4 CleanEx:MM_RBM41 Genevestigator:Q8JZV4
GermOnline:ENSMUSG00000031433 Uniprot:Q8JZV4
Length = 413
Score = 195 (73.7 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 55/163 (33%), Positives = 88/163 (53%)
Query: 6 KKNPVLQIKITPKASQTEDKDDSVAKELEEPNKE----DSDVK-P--FATPEELEMGKLP 58
+K +LQ K +A+Q + VAK ++ P ++ +K P F +E++ +L
Sbjct: 231 EKPSLLQDK-GKQAAQGKGPRLHVAKLIDFPTEQYWTGPKTLKQPIEFIPEDEIQRNRLS 289
Query: 59 PEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKL-M 117
EEI ++PMF +Y G P VLY+KNL+ P K G ++ M
Sbjct: 290 EEEIRNIPMFSSYNPGEPNKVLYLKNLS----PRVKERDLISLFARFQEKK-GPPIQFRM 344
Query: 118 QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 345 MTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>DICTYBASE|DDB_G0270734 [details] [associations]
symbol:DDB_G0270734 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270734 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13157 RefSeq:XP_646560.1
ProteinModelPortal:Q55CC1 EnsemblProtists:DDB0201959 GeneID:8617528
KEGG:ddi:DDB_G0270734 eggNOG:KOG4206 InParanoid:Q55CC1 OMA:NISKHAS
Uniprot:Q55CC1
Length = 578
Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 47/150 (31%), Positives = 74/150 (49%)
Query: 11 LQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKN 70
+Q KI + E+K+ + KE +E KE+ ++K E+L K EEI + K
Sbjct: 431 IQFKINGIETGCENKE--LEKEEKEKEKEEEEIKNIINIEQLNNNKATLEEIEIINK-KK 487
Query: 71 YAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKLMQEGRMRGQAFVTF 130
G P + +YIKN++K K L + +EG++R QAF+TF
Sbjct: 488 IEIGEPTNKIYIKNISKHASYQDFQSLFRRHFNSVTEMKKQLIIDYHKEGKLRNQAFITF 547
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
P+++LA ALN G+ KP++I F +N
Sbjct: 548 PTIQLATLALNQTQGFKLHQKPILILFSKN 577
>ZFIN|ZDB-GENE-041114-107 [details] [associations]
symbol:rbm41 "RNA binding motif protein 41"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-041114-107 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:55285 eggNOG:NOG147711 HOGENOM:HOG000231401
HOVERGEN:HBG057264 OrthoDB:EOG4JT05J EMBL:BC085431 IPI:IPI00832601
RefSeq:NP_001007406.1 UniGene:Dr.119922 ProteinModelPortal:Q5U3Q9
SMR:Q5U3Q9 GeneID:492764 KEGG:dre:492764 InParanoid:Q5U3Q9
NextBio:20865261 Uniprot:Q5U3Q9
Length = 439
Score = 170 (64.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 2 PVIKKKNPVLQIKITPKASQTEDKDDSVAKELEE-PNKEDSDVKPFATPEELEMGKLPPE 60
P K PV KIT SQ+ K +S + P +K + EE++ + E
Sbjct: 263 PQEKSTQPV---KIT--VSQSVGKLNSAFVQGHNGPVALSGRIKE-VSDEEIKSNRETEE 316
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKLMQEG 120
I ++P FKNY G P+ VL +KN++ D ++ + +L+ G
Sbjct: 317 AIRNIPRFKNYQRGKPSKVLCVKNISPRA--SLAQLVSLFSRFQKDESQ-PILYRLLT-G 372
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
R++GQAF+T ++A AL+L+NGY KP++I+FGR
Sbjct: 373 RLKGQAFITLADAKIAQAALDLLNGYKLLEKPLVIEFGR 411
>UNIPROTKB|H0YEB8 [details] [associations]
symbol:RNPC3 "RNA-binding protein 40" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BX322653
EMBL:AC095032 EMBL:AC105272 HGNC:HGNC:18666 ChiTaRS:RNPC3
Ensembl:ENST00000524641 Uniprot:H0YEB8
Length = 182
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 18 KASQTEDKDDSVAKELEEPN-------KEDSDVKPFA--TPEELEMGKLPPEEILSLPMF 68
K E+K+ K +PN KEDSD P + ELE G++ EE+ +L +F
Sbjct: 80 KEQNCEEKNHGFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVF 139
Query: 69 KNYAAGNPASVLYIKNLAKDV 89
++Y G P +Y+KNLAK V
Sbjct: 140 RSYEPGEPNCRIYVKNLAKHV 160
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 116 (45.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKLMQEGRMRGQ 125
P K + P+ LYI+N+ + + K + V+ + RMRGQ
Sbjct: 14 PSPKETDSQTPSETLYIRNIEEKI--RLTMLKRILEHLFGSYGKV-IDVQARKTLRMRGQ 70
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
AFV F ++E A RAL + GY GKPM+IQ+ ++
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 101 (40.6 bits), Expect = 0.00056, P = 0.00056
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 75 NPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKLM--QEGRMRGQAFVTFPS 132
NP +Y+ NL + V + G ++LM ++ +MRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFT-----QFGEIIQLMSFRKEKMRGQAHIVFKE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 101 (40.6 bits), Expect = 0.00056, P = 0.00056
Identities = 28/87 (32%), Positives = 41/87 (47%)
Query: 75 NPASVLYIKNLAKDVIPXXXXXXXXXXXXXXDAAKCGLTVKLM--QEGRMRGQAFVTFPS 132
NP +Y+ NL + V + G ++LM ++ +MRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFT-----QFGEIIQLMSFRKEKMRGQAHIVFKE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 167 153 0.00081 105 3 11 23 0.40 32
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 531 (57 KB)
Total size of DFA: 116 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.78u 0.13s 16.91t Elapsed: 00:00:01
Total cpu time: 16.78u 0.13s 16.91t Elapsed: 00:00:01
Start: Fri May 10 21:24:22 2013 End: Fri May 10 21:24:23 2013