BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039336
(167 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255568988|ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis]
gi|223535277|gb|EEF36954.1| RNA binding protein, putative [Ricinus communis]
Length = 450
Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 146/167 (87%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IPVIKKKNPVLQIKI PK SQTE DD KE +E ++E D KPFATPEELE KL PE
Sbjct: 284 IPVIKKKNPVLQIKIAPKVSQTEQTDDISMKESDEQDEEGLDHKPFATPEELESNKLAPE 343
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLP FKNY GNPASVLYIKNL+KD++ DDFF+IFGSLFGS+DAAK GL+VKLMQEG
Sbjct: 344 EILSLPQFKNYTVGNPASVLYIKNLSKDMVADDFFYIFGSLFGSLDAAKVGLSVKLMQEG 403
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
RMRGQAFVTFPSVELAH+ALNLVNGYVFKGKPMIIQFGRNP+A+K N
Sbjct: 404 RMRGQAFVTFPSVELAHQALNLVNGYVFKGKPMIIQFGRNPSASKTN 450
>gi|359477912|ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera]
gi|298205172|emb|CBI17231.3| unnamed protein product [Vitis vinifera]
Length = 463
Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/166 (82%), Positives = 148/166 (89%), Gaps = 2/166 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDD-SVAKELEEPNKEDSDVKPFATPEELEMGKLPP 59
IP+IKKKNPVLQIKI PK TE KD+ S+ KE E+ KED D+KP+AT EEL+ GKLPP
Sbjct: 297 IPMIKKKNPVLQIKIVPKVI-TEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPP 355
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEILSLPMFKNY AGNPA VLYIKNLAKDV+ DDF+FIFGSLFGS+DAAK GL+VKLMQE
Sbjct: 356 EEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQE 415
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
GRMRGQAFVTFPSVELAH ALNLVNGYVFKGKPMIIQFGRNPAAAK
Sbjct: 416 GRMRGQAFVTFPSVELAHHALNLVNGYVFKGKPMIIQFGRNPAAAK 461
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P +++ A A+ L I++L + IP D LF S A+ +V+ GR+R
Sbjct: 9 PRTQSFEAEKSAATLLIRHLP-EAIPQD---TLSRLFSSYGAS----SVRPCTSGRLRNC 60
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
AFV F S LA +AL +NG F GK ++++ P
Sbjct: 61 AFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPT 97
>gi|359478163|ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
vinifera]
Length = 463
Score = 267 bits (683), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 136/166 (81%), Positives = 148/166 (89%), Gaps = 2/166 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDD-SVAKELEEPNKEDSDVKPFATPEELEMGKLPP 59
IP+IKKKNPVLQIKI PK TE KD+ S+ KE E+ KED D+K +AT EEL+ GKLPP
Sbjct: 297 IPMIKKKNPVLQIKIAPKVI-TEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPP 355
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEILSLPMFKNYAAGNPA VLYIKNLAKDV+ DDF+FIFGSLFGS+DAAK GL+VKLMQE
Sbjct: 356 EEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQE 415
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
GRMRGQAFVTFPSVELAH ALN+VNGYVFKGKPMIIQFGRNPAAAK
Sbjct: 416 GRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAK 461
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P +++ A A+ L I++L + IP D LF S A+ +V+ GR+R
Sbjct: 9 PRTQSFEAEKSAATLLIRHLP-EAIPQD---TLSRLFSSYGAS----SVRPSTSGRLRNC 60
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
AFV F S LA +AL +NG F GK ++++ P
Sbjct: 61 AFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKP 96
>gi|297743789|emb|CBI36672.3| unnamed protein product [Vitis vinifera]
Length = 263
Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/166 (81%), Positives = 148/166 (89%), Gaps = 2/166 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDD-SVAKELEEPNKEDSDVKPFATPEELEMGKLPP 59
IP+IKKKNPVLQIKI PK TE KD+ S+ KE E+ KED D+K +AT EEL+ GKLPP
Sbjct: 97 IPMIKKKNPVLQIKIAPKVI-TEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPP 155
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEILSLPMFKNYAAGNPA VLYIKNLAKDV+ DDF+FIFGSLFGS+DAAK GL+VKLMQE
Sbjct: 156 EEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQE 215
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
GRMRGQAFVTFPSVELAH ALN+VNGYVFKGKPMIIQFGRNPAAAK
Sbjct: 216 GRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAK 261
>gi|224123704|ref|XP_002319145.1| predicted protein [Populus trichocarpa]
gi|222857521|gb|EEE95068.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/167 (76%), Positives = 141/167 (84%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IP+IKKKN VLQIKI PK + E KDDS+ E E+P E SD K +AT EE+E +L PE
Sbjct: 180 IPIIKKKNTVLQIKIAPKVTHNEYKDDSIMTESEDPGTEGSDQKHYATAEEIESKRLVPE 239
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLP FKNY GNPASVLYIKNL K+V+ DDFF+IFGSLFGSIDAAK GL+VKLMQEG
Sbjct: 240 EILSLPKFKNYTVGNPASVLYIKNLDKEVVADDFFYIFGSLFGSIDAAKSGLSVKLMQEG 299
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
RMRGQAFVTF SVELAH+ALNLVNGYVFK KPMIIQFGRNP+AAKPN
Sbjct: 300 RMRGQAFVTFSSVELAHQALNLVNGYVFKDKPMIIQFGRNPSAAKPN 346
>gi|356560981|ref|XP_003548764.1| PREDICTED: uncharacterized protein LOC100818499 [Glycine max]
Length = 456
Score = 258 bits (659), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 130/165 (78%), Positives = 140/165 (84%), Gaps = 1/165 (0%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IPVIKK N VL+I I PKA+ E KDD +EL+EP K+ D F TP+ELE GKLPPE
Sbjct: 291 IPVIKK-NHVLKINIVPKATVKEHKDDDTTQELQEPEKDVPDPNKFFTPDELERGKLPPE 349
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLPMFKNY AGNPA VLYIKNLAKDVI DDF+FIFGSLFGSI+AAK GL VKLMQEG
Sbjct: 350 EILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIEAAKSGLQVKLMQEG 409
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RMRGQAF+TFPS+ELAH ALNLVNGYV KGKPMIIQFGRNPAAAK
Sbjct: 410 RMRGQAFITFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPAAAK 454
>gi|297849226|ref|XP_002892494.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297338336|gb|EFH68753.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 438
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/168 (72%), Positives = 144/168 (85%), Gaps = 1/168 (0%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKE-LEEPNKEDSDVKPFATPEELEMGKLPP 59
IP I+K V+QIKI PKA Q E K++S ++ +EP +EDS++KPFA+ EELE G+LPP
Sbjct: 270 IPRIRKNKHVMQIKIIPKAPQDEYKEESENEDPADEPKEEDSNLKPFASLEELEKGRLPP 329
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
+EILSLPMFKNY AGNP+ VLYIKNLAKDV+ DDF++IFGS F SI+AAK L V+LMQE
Sbjct: 330 QEILSLPMFKNYTAGNPSLVLYIKNLAKDVVIDDFYYIFGSQFESIEAAKTSLGVRLMQE 389
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
GRMRGQAF+TFPSVE+AHRALNLVNG+VFKGKPMIIQFGRNP AAKPN
Sbjct: 390 GRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRNPGAAKPN 437
>gi|449444421|ref|XP_004139973.1| PREDICTED: RNA-binding protein 40-like [Cucumis sativus]
Length = 359
Score = 241 bits (614), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/165 (72%), Positives = 134/165 (81%), Gaps = 1/165 (0%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IP+IKKKNPV+QI+I PK + K ++ + EE KE D+KP+AT E+LE GKLPPE
Sbjct: 194 IPMIKKKNPVIQIRIAPKVIH-DGKVGNINNDGEEAEKEADDLKPYATLEDLERGKLPPE 252
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLPMFKNY AG P SVLYIKNLAKDV+ DD ++IFGSLF ID AK LTVKLMQEG
Sbjct: 253 EILSLPMFKNYTAGTPTSVLYIKNLAKDVLNDDLYYIFGSLFEGIDEAKSALTVKLMQEG 312
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RMRGQAFVTFPS+ELA RALNLVNGYVFKGKPMIIQFGRNP K
Sbjct: 313 RMRGQAFVTFPSIELAQRALNLVNGYVFKGKPMIIQFGRNPGGVK 357
>gi|357128643|ref|XP_003565980.1| PREDICTED: RNA-binding protein 40-like [Brachypodium distachyon]
Length = 455
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/166 (71%), Positives = 139/166 (83%), Gaps = 3/166 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDS-VAKELEEPNKEDSDVKPFATPEELEMGKLPP 59
I +IKKKNPVLQI I PKA+ E D S + KEL +K++ + K F TP+E+E KLP
Sbjct: 290 IQIIKKKNPVLQINILPKAAHKELADQSTIDKELS--SKDEPEEKYFVTPQEIEKEKLPT 347
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEILSLPMFKNY GNPASVLYIKNLAKDV+ DDF+++FGS+F S+DAAK GL++KLMQE
Sbjct: 348 EEILSLPMFKNYTPGNPASVLYIKNLAKDVVHDDFYYVFGSVFESMDAAKSGLSIKLMQE 407
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
GRMRGQAFVTFPSVELA RALNL +GYVFKGKPMIIQFGR+PAA+K
Sbjct: 408 GRMRGQAFVTFPSVELAQRALNLTHGYVFKGKPMIIQFGRSPAASK 453
>gi|15217461|ref|NP_172394.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
gi|20258828|gb|AAM13896.1| unknown protein [Arabidopsis thaliana]
gi|21689717|gb|AAM67480.1| unknown protein [Arabidopsis thaliana]
gi|332190295|gb|AEE28416.1| U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Arabidopsis
thaliana]
Length = 442
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/168 (69%), Positives = 141/168 (83%), Gaps = 1/168 (0%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKE-LEEPNKEDSDVKPFATPEELEMGKLPP 59
IP I+K V+QIKIT K +Q E K++S ++ +EP ++DS++KPFA+ EELE G+LPP
Sbjct: 274 IPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPP 333
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
++ILSLPMFKNY AGNP+ VLYIKNLAKDV+ DDF++IFGS F S + AK L V+LMQE
Sbjct: 334 QDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQE 393
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
GRMRGQAF+TFPSVE+AHRALNLVNG+VFKGKPMIIQFGR P AAKPN
Sbjct: 394 GRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGRTPGAAKPN 441
>gi|212721632|ref|NP_001132325.1| uncharacterized protein LOC100193767 [Zea mays]
gi|194694084|gb|ACF81126.1| unknown [Zea mays]
gi|414866589|tpg|DAA45146.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
gi|414866590|tpg|DAA45147.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 450
Score = 235 bits (600), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 136/171 (79%), Gaps = 16/171 (9%)
Query: 3 VIKKKNPVLQIKITPKA--------SQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEM 54
VIKKKNPVLQIKITPK S TE++ DS ++L+E K F TP+E+
Sbjct: 286 VIKKKNPVLQIKITPKPIQKEPPVPSMTENEPDSTHEQLQE--------KHFVTPQEMSR 337
Query: 55 GKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV 114
KLPPEEILSLPMFKNY GNPASVLYIKNLAKDV DDF+++FGS+F S+D+A+ GL+V
Sbjct: 338 EKLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVTHDDFYYVFGSVFESMDSARLGLSV 397
Query: 115 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
KLMQEGRMRGQAFVTFP+VELA RALNL +GYVFKGKPMIIQFGRNPAA K
Sbjct: 398 KLMQEGRMRGQAFVTFPTVELAQRALNLAHGYVFKGKPMIIQFGRNPAANK 448
>gi|222624851|gb|EEE58983.1| hypothetical protein OsJ_10687 [Oryza sativa Japonica Group]
Length = 560
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/165 (69%), Positives = 132/165 (80%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
+ VIKKKNPVLQI I PKA+Q E S + P E K F TP+++E KLPPE
Sbjct: 394 LQVIKKKNPVLQINIAPKAAQKELTVQSTTDKELVPTAEQLQGKHFVTPQDIEKEKLPPE 453
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLPMFKNY GNPASVLYIKNLAKDVI DDF+++FGS+F ++D A+ L++KLMQEG
Sbjct: 454 EILSLPMFKNYTPGNPASVLYIKNLAKDVIQDDFYYVFGSVFENMDIARSSLSIKLMQEG 513
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RMRGQAFVTFPSVELA RALNLV+G+VFKGKPMIIQFGRNPAA K
Sbjct: 514 RMRGQAFVTFPSVELAQRALNLVHGFVFKGKPMIIQFGRNPAANK 558
>gi|115452785|ref|NP_001049993.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|108707928|gb|ABF95723.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548464|dbj|BAF11907.1| Os03g0326600 [Oryza sativa Japonica Group]
gi|218192743|gb|EEC75170.1| hypothetical protein OsI_11395 [Oryza sativa Indica Group]
Length = 467
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/163 (70%), Positives = 131/163 (80%)
Query: 3 VIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEI 62
VIKKKNPVLQI I PKA+Q E S + P E K F TP+++E KLPPEEI
Sbjct: 303 VIKKKNPVLQINIAPKAAQKELTVQSTTDKELVPTAEQLQGKHFVTPQDIEKEKLPPEEI 362
Query: 63 LSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRM 122
LSLPMFKNY GNPASVLYIKNLAKDVI DDF+++FGS+F ++D A+ L++KLMQEGRM
Sbjct: 363 LSLPMFKNYTPGNPASVLYIKNLAKDVIQDDFYYVFGSVFENMDIARSSLSIKLMQEGRM 422
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RGQAFVTFPSVELA RALNLV+G+VFKGKPMIIQFGRNPAA K
Sbjct: 423 RGQAFVTFPSVELAQRALNLVHGFVFKGKPMIIQFGRNPAANK 465
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
A+ L +++L + IP + S +G+ C G++R AFV F +A
Sbjct: 42 AATLLVRHLP-EAIPQEMLSRLFSHYGATSVRPCA-------GGKLRNCAFVDFRDEVVA 93
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
+A +L+N F GK +I++ P + N
Sbjct: 94 SQAQSLLNRLRFLGKVLIVERANQPNSKNAN 124
>gi|356570297|ref|XP_003553326.1| PREDICTED: RNA-binding protein 40-like [Glycine max]
Length = 452
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/151 (76%), Positives = 126/151 (83%), Gaps = 1/151 (0%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IPVIKK N VL+I I PKA+ E KDD +EL+EP K+ D F TP+ELE GKLPPE
Sbjct: 300 IPVIKK-NHVLKINIVPKATVKEHKDDDTTQELQEPEKDVPDPNKFLTPDELERGKLPPE 358
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLPMFKNY AGNPA VLYIKNLAKDVI DDF+FIFGSLFGSIDAAK GL VKLMQEG
Sbjct: 359 EILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIDAAKSGLQVKLMQEG 418
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151
RMRGQAF+TFPS+ELAH ALNLVNGYV KG+
Sbjct: 419 RMRGQAFITFPSIELAHHALNLVNGYVLKGR 449
>gi|242035873|ref|XP_002465331.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
gi|241919185|gb|EER92329.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]
Length = 467
Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/163 (69%), Positives = 129/163 (79%)
Query: 3 VIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEI 62
VIKKKNPVLQIKI PK Q E S+ + + E K F TP+E+ KLPPEEI
Sbjct: 303 VIKKKNPVLQIKIAPKPMQKEPPVPSITENEPDSTHEQLQEKHFVTPQEMLREKLPPEEI 362
Query: 63 LSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRM 122
LSLPMFKNY GNPASVLYIKNLAKDV DDF+++FGS+F S+D+A+ GL++KLMQEGRM
Sbjct: 363 LSLPMFKNYTPGNPASVLYIKNLAKDVTHDDFYYVFGSVFESMDSARLGLSIKLMQEGRM 422
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RGQAFVTFP+VELA RALNL +GYVFKGKPMII FGRNPAA K
Sbjct: 423 RGQAFVTFPTVELAQRALNLAHGYVFKGKPMIIHFGRNPAANK 465
>gi|357508623|ref|XP_003624600.1| RNA-binding protein [Medicago truncatula]
gi|355499615|gb|AES80818.1| RNA-binding protein [Medicago truncatula]
Length = 492
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 135/198 (68%), Gaps = 34/198 (17%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IP+IKK N VL+I I PKA+ E KD++ EL+E K+ D F TP+ELE GKLPPE
Sbjct: 294 IPMIKK-NLVLKINIAPKATLNEHKDNATGIELQETEKDTLDPNKFLTPDELERGKLPPE 352
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLP FKNY GNPASVLYIKNLAKDV+ DDF+ +FGS FGS DAAK GL VKLMQEG
Sbjct: 353 EILSLPKFKNYTPGNPASVLYIKNLAKDVVADDFYLLFGSFFGSTDAAKSGLQVKLMQEG 412
Query: 121 RMRGQAFVTFPSVELAHRAL---------------------------------NLVNGYV 147
RM+GQAF+TFPS ELAH+AL NLVNGY
Sbjct: 413 RMKGQAFLTFPSTELAHQALAFMFEGFFRHCMLNKKISSHGTSYFGDRNKHHHNLVNGYK 472
Query: 148 FKGKPMIIQFGRNPAAAK 165
FKGKPMIIQFGRNPAAAK
Sbjct: 473 FKGKPMIIQFGRNPAAAK 490
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 68 FKNYAAGNPASV-----LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRM 122
F+ NP +V L IK+L D IP D S +G+ C GR+
Sbjct: 11 FQGTTEPNPCTVESPATLLIKHLP-DAIPHDTLSRLLSHYGASSVRPC-------SAGRL 62
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
R AFV F + LA +A +NG F GK + + A KPN
Sbjct: 63 RNCAFVDFKNDMLASQAQRQLNGLKFLGKVLSAE-----RAGKPN 102
>gi|147802491|emb|CAN75157.1| hypothetical protein VITISV_042644 [Vitis vinifera]
Length = 408
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/143 (78%), Positives = 123/143 (86%), Gaps = 2/143 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDD-SVAKELEEPNKEDSDVKPFATPEELEMGKLPP 59
IP+IKKKNPVLQIKI PK TE KD+ S+ KE E+ KED D+K +AT EEL+ GKLPP
Sbjct: 105 IPMIKKKNPVLQIKIAPKVI-TEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPP 163
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEILSLPMFKNYAAGNPA VLYIKNLAKDV+ DDF+FIFGSLFGS+DAAK GL+VKLMQE
Sbjct: 164 EEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQE 223
Query: 120 GRMRGQAFVTFPSVELAHRALNL 142
GRMRGQAFVTFPSVELAH AL
Sbjct: 224 GRMRGQAFVTFPSVELAHHALQF 246
>gi|3249110|gb|AAC24093.1| T12M4.6 [Arabidopsis thaliana]
Length = 467
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/140 (63%), Positives = 115/140 (82%), Gaps = 1/140 (0%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKE-LEEPNKEDSDVKPFATPEELEMGKLPP 59
IP I+K V+QIKIT K +Q E K++S ++ +EP ++DS++KPFA+ EELE G+LPP
Sbjct: 289 IPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPP 348
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
++ILSLPMFKNY AGNP+ VLYIKNLAKDV+ DDF++IFGS F S + AK L V+LMQE
Sbjct: 349 QDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQE 408
Query: 120 GRMRGQAFVTFPSVELAHRA 139
GRMRGQAF+TFPSVE+AH++
Sbjct: 409 GRMRGQAFLTFPSVEVAHQS 428
>gi|168034238|ref|XP_001769620.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679162|gb|EDQ65613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 457
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/164 (54%), Positives = 115/164 (70%), Gaps = 2/164 (1%)
Query: 4 IKKKNPVLQIKITPKASQTE--DKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEE 61
IKK PV+QIKI+ K S +E +D S E++ P + D A+ EL+ G++ E
Sbjct: 293 IKKNKPVMQIKISTKTSASEGPSRDISFQDEMDVPRTKVDDSSKRASRAELQGGQMSEAE 352
Query: 62 ILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR 121
+L+LP+ KNYAAG P+ VLYIKNLAK+V +D F++FG+ F ++D K L V LMQEGR
Sbjct: 353 MLALPILKNYAAGAPSQVLYIKNLAKEVTSEDLFYVFGAFFPTLDETKAALNVNLMQEGR 412
Query: 122 MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
MRGQAFVTFPS E A AL L +G+V KGKPMI+QFGRN +AAK
Sbjct: 413 MRGQAFVTFPSTEAAQDALGLTHGFVLKGKPMIVQFGRNRSAAK 456
>gi|147828713|emb|CAN75183.1| hypothetical protein VITISV_040912 [Vitis vinifera]
Length = 562
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 102/119 (85%), Gaps = 2/119 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDD-SVAKELEEPNKEDSDVKPFATPEELEMGKLPP 59
IP+IKKKNPVLQIKI PK TE KD+ S+ KE E+ KED D+KP+AT EEL+ GKLPP
Sbjct: 105 IPMIKKKNPVLQIKIXPKVI-TEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPP 163
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ 118
EEILSLPMFKNY AGNPA VLYIKNLAKDV+ DDF+FIFGSLFGS+DAAK GL+VKLMQ
Sbjct: 164 EEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQ 222
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 118 QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
+EGRMRGQAFVTFPSVELAH ALN+ N V + QFG P +
Sbjct: 365 EEGRMRGQAFVTFPSVELAHHALNMSNCDVLYFVVVSKQFGMEPTTFR 412
>gi|302811317|ref|XP_002987348.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
gi|300144983|gb|EFJ11663.1| hypothetical protein SELMODRAFT_235257 [Selaginella moellendorffii]
Length = 407
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 112/157 (71%), Gaps = 8/157 (5%)
Query: 4 IKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEIL 63
IKKK PV+QIKI PK E+K ++EE ++E S K FAT EELE GKL E+
Sbjct: 258 IKKKQPVIQIKIPPK---VEEKT-----KVEEKHEEVSQDKRFATREELEKGKLSLGEVA 309
Query: 64 SLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR 123
S P+FKNY+ G P+ VLYIKNL K+V+ +D ++FG+ F S + A+ GL VKLMQEGRM+
Sbjct: 310 SHPVFKNYSRGTPSPVLYIKNLEKEVVLEDLHYVFGAFFPSYEEAQAGLNVKLMQEGRMK 369
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
GQAFV FPS E+A AL V+ +V KGKPM+IQ+GRN
Sbjct: 370 GQAFVRFPSAEIAGDALAGVHSFVLKGKPMVIQYGRN 406
>gi|224144758|ref|XP_002325403.1| predicted protein [Populus trichocarpa]
gi|222862278|gb|EEE99784.1| predicted protein [Populus trichocarpa]
Length = 420
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 95/140 (67%), Gaps = 27/140 (19%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPE 60
IPVIKKKNPVLQ + VA EE+E +L PE
Sbjct: 306 IPVIKKKNPVLQ--------NLRTQTKRVA-------------------EEIESKRLAPE 338
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
EILSLP FKNY G PA VLYIKNL K+V+ DDFF+IFGSLFGSIDAAK GL+VKLMQEG
Sbjct: 339 EILSLPKFKNYTVGKPAPVLYIKNLDKEVVFDDFFYIFGSLFGSIDAAKSGLSVKLMQEG 398
Query: 121 RMRGQAFVTFPSVELAHRAL 140
RMRGQAFVTFPSVELAH+AL
Sbjct: 399 RMRGQAFVTFPSVELAHQAL 418
>gi|227204327|dbj|BAH57015.1| AT1G09230 [Arabidopsis thaliana]
Length = 375
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 81/100 (81%), Gaps = 1/100 (1%)
Query: 1 IPVIKKKNPVLQIKITPKASQTEDKDDSVAKE-LEEPNKEDSDVKPFATPEELEMGKLPP 59
IP I+K V+QIKIT K +Q E K++S ++ +EP ++DS++KPFA+ EELE G+LPP
Sbjct: 274 IPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPP 333
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFG 99
++ILSLPMFKNY AGNP+ VLYIKNLAKDV+ DDF++IF
Sbjct: 334 QDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFA 373
>gi|414866588|tpg|DAA45145.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]
Length = 396
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 75/105 (71%), Gaps = 16/105 (15%)
Query: 3 VIKKKNPVLQIKITPKA--------SQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEM 54
VIKKKNPVLQIKITPK S TE++ DS ++L+E K F TP+E+
Sbjct: 286 VIKKKNPVLQIKITPKPIQKEPPVPSMTENEPDSTHEQLQE--------KHFVTPQEMSR 337
Query: 55 GKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFG 99
KLPPEEILSLPMFKNY GNPASVLYIKNLAKDV DDF+++FG
Sbjct: 338 EKLPPEEILSLPMFKNYTPGNPASVLYIKNLAKDVTHDDFYYVFG 382
>gi|357625057|gb|EHJ75610.1| putative RNA-binding protein 40 [Danaus plexippus]
Length = 429
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 7/140 (5%)
Query: 21 QTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVL 80
Q E++ +++EEP+K P T +E+ +L E+ LP+FKNY G P+ L
Sbjct: 288 QKEEQSSVQEEKVEEPDK------PSITKKEILKNRLSYREMKGLPVFKNYHPGEPSMRL 341
Query: 81 YIKNLAKDVIPDDFFFIFGSLFGSI-DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
YIKNLAK+V D I+ I + + G V++MQEGRM+GQAFVTFPS++LA +A
Sbjct: 342 YIKNLAKNVTEQDVQRIYKRYMEDIPEEERVGFDVRVMQEGRMKGQAFVTFPSIKLAEQA 401
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L+ NG++ KPM++QF R
Sbjct: 402 LSETNGFILNDKPMVVQFAR 421
>gi|193683830|ref|XP_001948838.1| PREDICTED: RNA-binding protein 40-like [Acyrthosiphon pisum]
Length = 436
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 80/131 (61%), Gaps = 1/131 (0%)
Query: 34 EEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDD 93
+E +D + EEL +L +++ ++P+FKNY G P+ LYIKNLAK V+ +D
Sbjct: 305 KESESDDDTTGDCISKEELATNRLSDKDMNNMPIFKNYCPGAPSCRLYIKNLAKTVLDND 364
Query: 94 FFFIFGSLFGSIDAAKCGL-TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152
+I+ S D + V+LMQEGRM+GQAFVT P VE A +AL NGY+ K KP
Sbjct: 365 LKYIYKRFLKSGDLKPGTMFDVRLMQEGRMKGQAFVTLPCVENAQQALKETNGYILKDKP 424
Query: 153 MIIQFGRNPAA 163
MI+QF R+ A
Sbjct: 425 MIVQFARSATA 435
>gi|23598415|gb|AAN35177.1| nucleolin-like protein [Euprymna scolopes]
Length = 161
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 1/116 (0%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F + +E++ G++ EE++ LP FKNY+AG P+S LYIKNL+K V +D + IFG
Sbjct: 37 FVSADEIKQGRISTEEMVELPAFKNYSAGEPSSRLYIKNLSKHVSEEDLWKIFGYYVDWN 96
Query: 106 D-AAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ K ++LMQEGR+RGQAF+T P+ E+A AL NG+V +PM++QF R+
Sbjct: 97 NKEEKNMFYIRLMQEGRIRGQAFITLPNEEVAKVALEDTNGFVLHSRPMVVQFARS 152
>gi|156390212|ref|XP_001635165.1| predicted protein [Nematostella vectensis]
gi|156222256|gb|EDO43102.1| predicted protein [Nematostella vectensis]
Length = 476
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-S 104
F + EL+ ++ +EI ++ FKNY+ G+P S LY+KNL++ V D ++FG S
Sbjct: 354 FVSSRELKANRMSEKEIKAMSQFKNYSPGDPTSRLYVKNLSRQVEDKDLMYVFGRYVDFS 413
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 163
+ K ++LM+EGRM+GQAFVT PS E A RAL V+GY+ GKP++IQF R+ A
Sbjct: 414 VGEQKDRFDIRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPIVIQFARSAKA 472
>gi|449666884|ref|XP_002155289.2| PREDICTED: uncharacterized protein LOC100208918 [Hydra
magnipapillata]
Length = 449
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
K + + +L+ ++ EEIL++ FK Y G + LYIKNL+K V DD FIF
Sbjct: 329 KSYISSSQLKENRISAEEILAMTQFKKYTCGERTNRLYIKNLSKQVQTDDLLFIFNRFIR 388
Query: 104 SI-DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ K L ++LMQEGRM+GQAFVTFP+ +A ++L +GY+ GKPM++QFG+
Sbjct: 389 HCSEEEKALLDIRLMQEGRMKGQAFVTFPNETIAEKSLKQTHGYILLGKPMVVQFGK 445
>gi|345323736|ref|XP_001509729.2| PREDICTED: RNA-binding protein 40 [Ornithorhynchus anatinus]
Length = 516
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 34 EEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIP 91
+E KEDSD P F + ELE G+LP EE+ SL +FK+Y G+P +Y+KNLAK V
Sbjct: 373 KEETKEDSDEMPSEFVSRRELEKGRLPREEMESLSVFKSYEPGDPNCRIYVKNLAKQVQE 432
Query: 92 DDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150
D FIFG S + + ++LM+EGRM+GQAF+ P + A +AL NGYV G
Sbjct: 433 KDLKFIFGRYVDFSSETERIMFDIRLMKEGRMKGQAFIGLPDEKAAAKALKEANGYVLFG 492
Query: 151 KPMIIQFGRN 160
KPM++QF R+
Sbjct: 493 KPMVVQFARS 502
>gi|321474229|gb|EFX85194.1| hypothetical protein DAPPUDRAFT_313833 [Daphnia pulex]
Length = 437
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 20 SQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASV 79
SQ E + +++ E +ED + F + +L++ KL EEI LP+FKNY+AG P+S
Sbjct: 294 SQNEQQSEAL-----ENQEEDYE---FISKRKLQINKLQDEEIKLLPVFKNYSAGAPSSR 345
Query: 80 LYIKNLAKDVIPDDFFFIFGS-LFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
LY+KNLAK V D I+G + + + + ++LM EGRM+GQAF+T P+V+ A
Sbjct: 346 LYVKNLAKTVKESDLKHIYGRYVLWTSEEERNMFDIRLMTEGRMKGQAFITLPNVDRAKE 405
Query: 139 ALNLVNGYVFKGKPMIIQFGRN 160
ALN N + +GKP+++ F R+
Sbjct: 406 ALNDTNWVMLQGKPLVVHFARS 427
>gi|346465485|gb|AEO32587.1| hypothetical protein [Amblyomma maculatum]
Length = 423
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 32 ELEEPNKEDSDV----KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAK 87
E E N D + F T EE+ G++ +E+ +FKNY G+ AS LYIKN+AK
Sbjct: 284 ETAEANASDDNYDWTGTQFLTREEVRSGRISSDEMRKASVFKNYEPGDVASRLYIKNVAK 343
Query: 88 DVIPDDFFFIFGSLF-GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY 146
D F I+G + + + ++LM+EGRM+GQAF+T A RA NGY
Sbjct: 344 AATVQDLFLIYGGYINANSEQQRNAFDIRLMKEGRMKGQAFLTLAEESQADRARRDTNGY 403
Query: 147 VFKGKPMIIQFGRNPAAAKP 166
+ KGKP+++QF R+ A KP
Sbjct: 404 LLKGKPLVVQFARSAKARKP 423
>gi|317419755|emb|CBN81791.1| RNA-binding protein 40 [Dicentrarchus labrax]
Length = 511
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 8/148 (5%)
Query: 14 KITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAA 73
KI P A T+ +D E + E + + +ELE G+L +EI + +FKNY
Sbjct: 354 KIYPTAQLTQQQD-------EHSDDEQDLMSDVISRKELEKGRLSRDEIKRMSVFKNYEP 406
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
G P LY+KN+AK V D +I+G S +A + + LM+EGRM+GQAFV PS
Sbjct: 407 GEPTCRLYVKNIAKQVEEKDLKYIYGRYINPSSEAERNMFDIVLMKEGRMKGQAFVGLPS 466
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A +AL NGYV KP+++QF R+
Sbjct: 467 EQSAEKALRETNGYVLDDKPLVVQFARS 494
>gi|344275550|ref|XP_003409575.1| PREDICTED: RNA-binding protein 40 [Loxodonta africana]
Length = 517
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
+EDSD P F + +EL+ G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 378 QEDSDEMPSEFISRKELKKGRISREEMETLSIFRSYEPGEPNCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ A +AL NGYV GKPM+
Sbjct: 438 FIFGRYVNFSSETERIMFDIRLMKEGRMKGQAFIGLPNETAAAKALREANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|297279397|ref|XP_001108341.2| PREDICTED: RNA-binding protein 40-like [Macaca mulatta]
Length = 511
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 365 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 424
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 425 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAATKALKEANGYVL 484
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 485 FGKPMVVQFARS 496
>gi|334323863|ref|XP_001381889.2| PREDICTED: RNA-binding protein 40 [Monodelphis domestica]
Length = 510
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
+EDSD P F + +ELE G++ EE+ +L +FK+Y G+P +Y+KNLAK V +D
Sbjct: 371 QEDSDEIPAEFVSRKELEKGRISKEEMETLSVFKSYEPGDPNCRIYVKNLAKQVEENDLK 430
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + ++LM+EGRM+GQAF+ FP + A +AL NGYV GKPM+
Sbjct: 431 FIFGRYVDFSSQTERIMFDIRLMKEGRMKGQAFIGFPDEKAAAKALKEANGYVLFGKPMV 490
Query: 155 IQFGRN 160
+QF R+
Sbjct: 491 VQFARS 496
>gi|168018462|ref|XP_001761765.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687136|gb|EDQ73521.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 73/115 (63%), Gaps = 6/115 (5%)
Query: 49 PEE-LEMGKLPPEEILSLP--MFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
PEE ++ ++P EI LP F NY +G+P + +YIKNLA DV D IFG F +
Sbjct: 285 PEEVIKANRMPEGEIRGLPGGKFANYTSGSPTNTVYIKNLAADVTEPDLIGIFGR-FETY 343
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K L +LMQ GRM+GQAFVTF VE A +AL LV+GY+ K KPM+I+F R
Sbjct: 344 GRPK--LIYRLMQRGRMKGQAFVTFADVETATKALKLVHGYILKAKPMVIEFARG 396
>gi|62858877|ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|115530784|emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
K F + LE G++ EE+ +FKNY G P LY+KNL+K D FIFG
Sbjct: 396 KEFISRRALEKGRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFID 455
Query: 104 -SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
S + K ++LM+EGRM+GQAF+ FP+ ++A +AL V+GYV KPM+IQF R+
Sbjct: 456 FSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARS 513
>gi|213624585|gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|213627408|gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
K F + LE G++ EE+ +FKNY G P LY+KNL+K D FIFG
Sbjct: 396 KEFISRRALEKGRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFID 455
Query: 104 -SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
S + K ++LM+EGRM+GQAF+ FP+ ++A +AL V+GYV KPM+IQF R+
Sbjct: 456 FSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARS 513
>gi|300175397|emb|CBK20708.2| unnamed protein product [Blastocystis hominis]
Length = 328
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 11/126 (8%)
Query: 43 VKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLF 102
V+ + +++ ++ EE+ FKNY+ G+P+ LY++N+AKDV DD +FG F
Sbjct: 188 VRSCVSLQDILKHRISKEEMSHQKAFKNYSYGDPSCKLYLRNMAKDVTADDLLRLFGCFF 247
Query: 103 GSIDAA---------KC-GLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152
S + A KC L +++M EGRMRGQAF+TFPSVELA AL VNGY+ K KP
Sbjct: 248 DSDEEASAYTVEMEMKCRKLEIRIM-EGRMRGQAFITFPSVELAREALVTVNGYLLKEKP 306
Query: 153 MIIQFG 158
++I G
Sbjct: 307 IVIVRG 312
>gi|395535479|ref|XP_003769753.1| PREDICTED: RNA-binding protein 40 [Sarcophilus harrisii]
Length = 510
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
+EDSD P F + +ELE G++ EE+ +L +FK+Y G+P +Y+KNLAK V +D
Sbjct: 371 QEDSDDIPAEFVSRKELEKGRISKEEMETLSVFKSYEPGDPNCRIYVKNLAKQVEENDLK 430
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + ++LM+EGRM+GQAF+ FP + A +AL NGYV GKPM+
Sbjct: 431 FIFGRYVDFSSQTERIMFDIRLMKEGRMKGQAFIGFPDEKAAAKALKEANGYVLFGKPMV 490
Query: 155 IQFGRN 160
+QF R+
Sbjct: 491 VQFARS 496
>gi|166796977|gb|AAI59025.1| rnpc3 protein [Xenopus (Silurana) tropicalis]
Length = 520
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
K F + LE G++ EE+ +FKNY G P LY+KNL+K D FIFG
Sbjct: 389 KEFISRRALEKGRITKEEMRKTSVFKNYEPGEPNCRLYVKNLSKQAEEKDLKFIFGRFID 448
Query: 104 -SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
S + K ++LM+EGRM+GQAF+ FP+ ++A +AL V+GYV KPM+IQF R+
Sbjct: 449 FSSETEKNMFDIRLMKEGRMKGQAFIGFPTEDVAAQALKHVHGYVLHDKPMVIQFARS 506
>gi|405951102|gb|EKC19044.1| RNA-binding protein 40 [Crassostrea gigas]
Length = 488
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 42 DVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSL 101
D F + ++L+ GK+ E+ + +FKNY +G AS LYIKNLAK D I+GS
Sbjct: 356 DPSKFLSLDDLKNGKISKSEMKNFSVFKNYKSGEIASRLYIKNLAKQTTEQDLVNIYGSF 415
Query: 102 FG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ K ++LM+EGRM+GQAFVTF + AH+AL NG+V KPM +QF R+
Sbjct: 416 VNWDKELEKNIFDIRLMKEGRMKGQAFVTFSNETSAHKALKETNGFVLNSKPMAVQFARS 475
Query: 161 PAAAKPN 167
A + N
Sbjct: 476 AKAKETN 482
>gi|260817846|ref|XP_002603796.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
gi|229289119|gb|EEN59807.1| hypothetical protein BRAFLDRAFT_114988 [Branchiostoma floridae]
Length = 425
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-S 104
F + EL G+L ++I L +FKNY+AG P LYIKN+AK D FI+G
Sbjct: 289 FISSRELRRGRLSHDDIRKLSVFKNYSAGEPNCRLYIKNVAKQTEEKDLRFIYGRYVNFD 348
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
D K ++LM+EGRM+GQAF+ PS ++A +A+ NG+ GKP+++QF R +A
Sbjct: 349 DDIEKEMFDIRLMKEGRMKGQAFIGLPSEKVAQKAVRDTNGFELNGKPLVVQFAR---SA 405
Query: 165 KP 166
KP
Sbjct: 406 KP 407
>gi|348538447|ref|XP_003456702.1| PREDICTED: RNA-binding protein 40-like [Oreochromis niloticus]
Length = 508
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 10/161 (6%)
Query: 10 VLQIKITPKASQTEDKDD--------SVAKELEEPNKEDSD-VKPFATPEELEMGKLPPE 60
V Q +I P ++Q E + +K+ EE + D V + +ELE G+L +
Sbjct: 331 VDQSEIKPSSNQEEAEAKGFGKLYFTQASKQQEERGDNEQDLVSDVISRKELEKGRLSRD 390
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQE 119
EI + +FKNY G P LY+KN+AK V + +I+G S + + + LM+E
Sbjct: 391 EIKRMSVFKNYEPGEPTCRLYVKNIAKQVEEKELKYIYGRYINLSSEEERNMFDIVLMKE 450
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
GRM+GQAFV PSV+ A +AL NGYV KP+++QF R+
Sbjct: 451 GRMKGQAFVGLPSVQSAEKALQETNGYVLYDKPLVVQFARS 491
>gi|332020742|gb|EGI61146.1| RNA-binding protein 40 [Acromyrmex echinatior]
Length = 450
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 80/146 (54%), Gaps = 8/146 (5%)
Query: 15 ITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAG 74
I P TED DS E N E K F T EEL K+ + LP+FKNY G
Sbjct: 308 IFPANKTTEDAKDS------EENAEMPKNK-FITSEELATNKISANDQRLLPVFKNYHPG 360
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGS-LFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
P++ LYIKNLAK V D +I+ + + A+ V+LMQEGRM+GQAF+T +
Sbjct: 361 KPSNRLYIKNLAKQVEMKDLHYIYERYVIAGLKDAENEYDVRLMQEGRMKGQAFITLQNA 420
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
A AL NGY+ K KPM++QF +
Sbjct: 421 VQAKMALEETNGYILKDKPMVVQFAK 446
>gi|345487727|ref|XP_001606002.2| PREDICTED: RNA-binding protein 40-like [Nasonia vitripennis]
Length = 479
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGS-LFGS 104
F T E+L ++ + LP+FKNY G P+ LYIKNLAK V D FI+ +
Sbjct: 361 FITTEQLHDNRISANDRDVLPVFKNYHPGKPSCRLYIKNLAKQVEESDLHFIYRRYVLPK 420
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 163
+ V+LMQEGRM+GQAFVT P++ A AL NGY+ K KPM++QF + P +
Sbjct: 421 SKNEESEYNVRLMQEGRMKGQAFVTLPNIAQAQLALEETNGYILKDKPMVVQFAKVPKS 479
>gi|189235800|ref|XP_001808901.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Tribolium castaneum]
gi|270004699|gb|EFA01147.1| hypothetical protein TcasGA2_TC010372 [Tribolium castaneum]
Length = 424
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
K T EEL ++P +++ LP+FKNY G P LYIKN+AK+ D +I+
Sbjct: 300 KTVITAEELAANQIPEKDLDVLPVFKNYHPGAPTCRLYIKNIAKNAELKDLEYIYNRYKV 359
Query: 104 SIDAAK-CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
D ++LMQEGRM+GQAFVT SVE+A +AL N Y+ K KP+++ F R+
Sbjct: 360 ESDGENPSTFDIRLMQEGRMKGQAFVTLSSVEIAQKALKETNAYILKDKPLVVVFARSAP 419
Query: 163 AAKPN 167
K N
Sbjct: 420 TKKAN 424
>gi|349603263|gb|AEP99151.1| RNA-binding protein 40-like protein, partial [Equus caballus]
Length = 424
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +LP+F++Y G P +Y+KNLAK V D
Sbjct: 285 KEDSDEMPSECISRRELEKGRISREEMETLPVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 344
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 345 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 404
Query: 155 IQFGRN 160
+QF R+
Sbjct: 405 VQFARS 410
>gi|410908825|ref|XP_003967891.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like
[Takifugu rubripes]
Length = 505
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 14 KITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAA 73
K+ P A ++ +D+ E E P SDV + +ELE G+L +E+ + +FKNY A
Sbjct: 350 KLYPSARPSQQEDER-RDEYELP----SDV---ISRKELEKGRLSRDEMKKISVFKNYEA 401
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
G P LY+KN+AK V D +I+G S + + + LM+EGRM+GQAFV PS
Sbjct: 402 GEPTCRLYVKNIAKQVEEKDLKYIYGRYINPSSEEERNMFDIMLMKEGRMKGQAFVGLPS 461
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A +AL NGY+ KP+I+QF R+
Sbjct: 462 EQSAEKALRETNGYILYDKPLIVQFARS 489
>gi|307210931|gb|EFN87246.1| Tetratricopeptide repeat protein 26 [Harpegnathos saltator]
Length = 1038
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 8/152 (5%)
Query: 15 ITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAG 74
I P TED D+ A +E+P + F T EELE ++ + LP+FKNY G
Sbjct: 334 IFPATKSTEDAKDTEA-SVEKPKNK------FITTEELEANRISANDQRVLPVFKNYHPG 386
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGS-LFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
P++ LYIKNLAK V D +I+ + + A+ ++LMQEGRM+GQAF+T +
Sbjct: 387 KPSNRLYIKNLAKQVEAKDLHYIYQRYVIAGLKDAENEYDMRLMQEGRMKGQAFITLQNN 446
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
A AL+ NGY+ K KPM+I PA+++
Sbjct: 447 VQAQMALDETNGYILKDKPMVILSRAKPASSE 478
>gi|90093337|ref|NP_001035019.1| RNA-binding protein 40 [Danio rerio]
gi|89130616|gb|AAI14289.1| RNA-binding region (RNP1, RRM) containing 3 [Danio rerio]
Length = 505
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-S 104
F + ELE G+L +EI L +FK Y G P LY+KN+AK V D FI+G S
Sbjct: 373 FISRRELERGRLSRDEIKKLSVFKKYEPGEPTCRLYVKNVAKHVEEKDLKFIYGRYIDIS 432
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ + + LM+EGRM+GQAF+ PS A +AL NGYV K KP+++QF R +A
Sbjct: 433 SEEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFAR---SA 489
Query: 165 KP 166
KP
Sbjct: 490 KP 491
>gi|346469585|gb|AEO34637.1| hypothetical protein [Amblyomma maculatum]
Length = 360
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 51 ELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKC 110
E+ +L +EI LP F+NY+ GN VLY+KNL V + +LF D C
Sbjct: 254 EIAAERLGLDEIKKLPRFQNYSPGNKNQVLYLKNLHHKVDIRELM----ALFCRFDEDTC 309
Query: 111 GLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ +L+ G++RGQAFVTFPS + A RAL L NGYV +GKP++I++GRN
Sbjct: 310 TVKYRLLS-GKLRGQAFVTFPSTQAATRALELCNGYVLRGKPIVIEYGRN 358
>gi|71051116|gb|AAH98742.1| Rnpc3 protein [Rattus norvegicus]
Length = 423
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 6/132 (4%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P F + ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D
Sbjct: 285 KEDSDEMPSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLK 344
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM+
Sbjct: 345 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMV 404
Query: 155 IQFGRNPAAAKP 166
+QF R +A+P
Sbjct: 405 VQFAR---SARP 413
>gi|189303595|ref|NP_001094280.1| RNA-binding protein 40 [Rattus norvegicus]
gi|160419222|sp|Q4G055.2|RBM40_RAT RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|149025759|gb|EDL82002.1| rCG28478 [Rattus norvegicus]
gi|183986085|gb|AAI66571.1| Rnpc3 protein [Rattus norvegicus]
Length = 515
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P F + ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D
Sbjct: 377 KEDSDEMPSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLK 436
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM+
Sbjct: 437 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMV 496
Query: 155 IQFGRN 160
+QF R+
Sbjct: 497 VQFARS 502
>gi|338725221|ref|XP_003365101.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Equus
caballus]
Length = 580
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +LP+F++Y G P +Y+KNLAK V D
Sbjct: 441 KEDSDEMPSECISRRELEKGRISREEMETLPVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 500
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 501 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 560
Query: 155 IQFGRN 160
+QF R+
Sbjct: 561 VQFARS 566
>gi|383852802|ref|XP_003701914.1| PREDICTED: RNA-binding protein 40-like [Megachile rotundata]
Length = 427
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 19/172 (11%)
Query: 7 KNPVLQIKITPKASQTEDKDDSVAKE--------LEEPNKEDSDV-----------KPFA 47
KN +++K K +K+D+V E L P +DS++ +
Sbjct: 252 KNLKIELKTVDKLLDIPNKEDTVVSENAVDGGFGLMFPASKDSEMAENSESNECIQREII 311
Query: 48 TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA 107
T EEL ++ + LP+FKNY G P++ LYIKNLAK V D FI+
Sbjct: 312 TSEELANNRISTNDQRVLPVFKNYHPGKPSNRLYIKNLAKHVEEKDLHFIYRKYVIPDLK 371
Query: 108 AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V+LMQEGRM+GQAFVT +++ A AL+ NGY+ K KPM++QF +
Sbjct: 372 TDFEYDVRLMQEGRMKGQAFVTLQNIDQAQLALDETNGYILKDKPMVVQFAK 423
>gi|328779176|ref|XP_623250.3| PREDICTED: RNA-binding protein 40-like [Apis mellifera]
Length = 430
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 68/112 (60%)
Query: 48 TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA 107
T EL ++ + LP+FKNY G P++ LYIKNLAK V D FI+ S
Sbjct: 315 TSNELANNRISANDQRLLPVFKNYHPGKPSNRLYIKNLAKQVEEKDLHFIYRKYIISELK 374
Query: 108 AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ V+LMQEGRM+GQAF+T +VE A AL+ NG++ K KPM++QF +
Sbjct: 375 TEFEYDVRLMQEGRMKGQAFITLQNVEQAQLALDETNGFILKDKPMVVQFAK 426
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-S 104
F + ELE G++ +E+ +L +FKNY G+P +Y+KNL+K V D FIFG S
Sbjct: 381 FISKRELEKGRISKKEMGTLSVFKNYEPGDPNCRIYVKNLSKQVQEKDLKFIFGRYVDFS 440
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ + ++LM+EGRM+GQAF+ P + A +AL VNGY+ KPM++QF R+ A
Sbjct: 441 SEVERIMFDIRLMKEGRMKGQAFIGLPDEKAATKALKEVNGYLLFDKPMVVQFARS-ARP 499
Query: 165 KPN 167
KP+
Sbjct: 500 KPD 502
>gi|351699567|gb|EHB02486.1| RNA-binding protein 40 [Heterocephalus glaber]
Length = 517
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 33 LEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E +KEDSD P + ELE G++ EE+ SL +F++Y G P +Y+KNLAK V
Sbjct: 373 ITEESKEDSDEMPSECISRRELEKGRISREEMESLSVFRSYEPGEPNCRIYVKNLAKHVQ 432
Query: 91 PDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
D FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGY+
Sbjct: 433 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYILF 492
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 493 GKPMVVQFARS 503
>gi|432927341|ref|XP_004080978.1| PREDICTED: RNA-binding protein 40-like [Oryzias latipes]
Length = 500
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 30 AKELEEPNKEDSD--VKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAK 87
A +E N D D V + +ELE G+L +E+ + +FKNY AG P LY+KN++K
Sbjct: 350 ASHQQEENSADGDDLVSGVISRKELEKGRLAKDEMKRMSVFKNYGAGEPTCRLYVKNISK 409
Query: 88 DVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY 146
V D +I+G S + + V LM+EGRM+GQAF+ P+ + A +AL NG+
Sbjct: 410 QVEEKDLRYIYGRYIDPSSEEERNMFDVVLMKEGRMKGQAFIGLPNEQSAEKALRETNGF 469
Query: 147 VFKGKPMIIQFGRN 160
V KP+++QF R+
Sbjct: 470 VLHDKPLVVQFARS 483
>gi|241695301|ref|XP_002413045.1| conserved hypothetical protein [Ixodes scapularis]
gi|215506859|gb|EEC16353.1| conserved hypothetical protein [Ixodes scapularis]
Length = 440
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F + E+ G++ EE+ +F+NY GNPAS LY+KN+AK V +D F I+G G +
Sbjct: 316 FMSQREIRDGRISSEEMRKASVFRNYEPGNPASRLYVKNVAKGVEVEDLFRIYG---GYV 372
Query: 106 DAA----KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
D + ++LM+EGRM+GQAF+TF S A RA NG++ KG+P+++ F R+
Sbjct: 373 DLKSELERYTFDIRLMKEGRMKGQAFLTFASESQAERARRDTNGFLLKGRPLVVHFARSA 432
Query: 162 AAAKP 166
A P
Sbjct: 433 KAKGP 437
>gi|307165867|gb|EFN60222.1| RNA-binding protein 40 [Camponotus floridanus]
Length = 455
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 10/148 (6%)
Query: 15 ITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELE--MGKLPPEEILSLPMFKNYA 72
I+P ++D DS KE E K + T EELE ++ + LP+FKNY
Sbjct: 311 ISPINKTSKDTKDS--KENTETQKNEC-----ITSEELEAKTARISINDQRLLPVFKNYH 363
Query: 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLF-GSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
G P++ LYIKNLAK V D +I+ F ++ A+ V+L+QEGRM+GQAF+T
Sbjct: 364 PGIPSNRLYIKNLAKQVEIKDLHYIYKRYFIAGLEDAEDEYDVRLLQEGRMKGQAFITLQ 423
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
++ A +AL NGY+ K KPM++QF +
Sbjct: 424 NISQAKKALKETNGYILKDKPMVVQFAK 451
>gi|311254710|ref|XP_003125931.1| PREDICTED: RNA-binding protein 40-like [Sus scrofa]
gi|350583601|ref|XP_003481551.1| PREDICTED: RNA-binding protein 40 [Sus scrofa]
Length = 515
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Query: 28 SVAKELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNL 85
S+A+E+ KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNL
Sbjct: 370 SIAEEI----KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNL 425
Query: 86 AKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144
AK V D FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL N
Sbjct: 426 AKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 485
Query: 145 GYVFKGKPMIIQFGRN 160
GYV GKPM++QF R+
Sbjct: 486 GYVLFGKPMVVQFARS 501
>gi|16741598|gb|AAH16603.1| Rnpc3 protein [Mus musculus]
Length = 258
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Query: 39 EDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D F
Sbjct: 121 EDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKF 180
Query: 97 IFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 181 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 240
Query: 156 QFGRNPAAAKP 166
QF R +A+P
Sbjct: 241 QFAR---SARP 248
>gi|291398403|ref|XP_002715872.1| PREDICTED: RNA-binding region (RNP1, RRM) containing 3 [Oryctolagus
cuniculus]
Length = 516
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 33 LEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 ITEETKEDSDEMPSECISRRELEKGRISREEMEALSVFRSYEPGEPNCRIYVKNLAKHVQ 431
Query: 91 PDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
D FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 491
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 GKPMVVQFARS 502
>gi|432103902|gb|ELK30735.1| RNA-binding protein 40 [Myotis davidii]
Length = 515
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Query: 28 SVAKELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNL 85
SVA+E +KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNL
Sbjct: 371 SVAEE----SKEDSDETPSECISRRELEKGRVSREEMETLSVFRSYEPGEPNCRIYVKNL 426
Query: 86 AKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144
AK V D FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL N
Sbjct: 427 AKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN 486
Query: 145 GYVFKGKPMIIQFGRN 160
GYV GKPM++QF R+
Sbjct: 487 GYVLFGKPMVVQFARS 502
>gi|50511129|dbj|BAD32550.1| mKIAA1839 protein [Mus musculus]
Length = 462
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Query: 39 EDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D F
Sbjct: 325 EDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKF 384
Query: 97 IFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 385 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 444
Query: 156 QFGRNPAAAKP 166
QF R +A+P
Sbjct: 445 QFAR---SARP 452
>gi|31981077|ref|NP_080319.2| RNA-binding protein 40 [Mus musculus]
gi|84662758|ref|NP_001033785.1| RNA-binding protein 40 [Mus musculus]
gi|160419225|sp|Q3UZ01.2|RBM40_MOUSE RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|27695046|gb|AAH43695.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
gi|148680462|gb|EDL12409.1| RNA-binding region (RNP1, RRM) containing 3 [Mus musculus]
Length = 514
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 39 EDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D F
Sbjct: 377 EDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKF 436
Query: 97 IFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 437 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 496
Query: 156 QFGRN 160
QF R+
Sbjct: 497 QFARS 501
>gi|380027506|ref|XP_003697464.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Apis
florea]
Length = 461
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 48 TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSL-FGSID 106
T EL ++ + LP+FKNY G P++ LYIKNLAK V D FI ++ + +
Sbjct: 345 TSNELANNRISVNDQRLLPVFKNYHPGKPSNRLYIKNLAKQVEEKDLHFIIENMXYQNXK 404
Query: 107 AAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V+LMQEGRM+GQAF+T +VE A AL+ NG++ K KPM++QF +
Sbjct: 405 QNLSKYDVRLMQEGRMKGQAFITLQNVEQAQLALDXTNGFILKDKPMVVQFAK 457
>gi|50949388|emb|CAB70897.2| hypothetical protein [Homo sapiens]
Length = 292
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 147 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 206
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 207 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 266
Query: 149 KGKPMIIQFGRNPAAAKP 166
GKPM++QF R +A+P
Sbjct: 267 FGKPMVVQFAR---SARP 281
>gi|358423109|ref|XP_616173.4| PREDICTED: RNA-binding protein 41 isoform 1 [Bos taurus]
gi|359081799|ref|XP_002699929.2| PREDICTED: RNA-binding protein 41 [Bos taurus]
Length = 413
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|426257763|ref|XP_004022492.1| PREDICTED: RNA-binding protein 41 [Ovis aries]
Length = 413
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|348586942|ref|XP_003479227.1| PREDICTED: RNA-binding protein 40-like [Cavia porcellus]
Length = 517
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 378 KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 438 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|296470958|tpg|DAA13073.1| TPA: transformer-2 alpha-like [Bos taurus]
Length = 439
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 303 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 358
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 359 QEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 413
>gi|198425302|ref|XP_002121929.1| PREDICTED: similar to RNA-binding region (RNP1, RRM) containing 3
[Ciona intestinalis]
Length = 473
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 13/169 (7%)
Query: 11 LQIKITPKASQTEDKDDSVAK------ELEEPNK----EDSDVKPFATPEELEMGKLPPE 60
L+I + + TE + K E +E NK E + V F T ++LE G+L +
Sbjct: 306 LKINVLIDETNTESSSEGFGKIIPSKNEAQEGNKVEGVETNVVFDFITEKQLEDGRLSSK 365
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQ 118
+ +FK Y G P+ LY+KNL K D FIFG+ F + D AK V++M
Sbjct: 366 QRSDNSLFKGYKLGEPSCRLYVKNLPKKATDKDMKFIFGAFVDFSNEDEAKM-FDVRVMT 424
Query: 119 EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
+GRM+GQAF+ PSV+ A +AL NGY GKPMI+ + R+ K N
Sbjct: 425 QGRMKGQAFIGMPSVDSATKALQATNGYTLIGKPMIVMYARSNKPKKEN 473
>gi|440906239|gb|ELR56525.1| RNA-binding protein 41, partial [Bos grunniens mutus]
Length = 413
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|402911031|ref|XP_003918147.1| PREDICTED: RNA-binding protein 41 [Papio anubis]
Length = 413
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAFVTFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|386780672|ref|NP_001247510.1| RNA-binding protein 41 [Macaca mulatta]
gi|355705049|gb|EHH30974.1| RNA-binding motif protein 41 [Macaca mulatta]
gi|355757597|gb|EHH61122.1| RNA-binding motif protein 41 [Macaca fascicularis]
gi|380814358|gb|AFE79053.1| RNA-binding protein 41 isoform 1 [Macaca mulatta]
gi|383419697|gb|AFH33062.1| RNA-binding protein 41 isoform 1 [Macaca mulatta]
Length = 413
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAFVTFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|355717002|gb|AES05792.1| RNA-binding region containing 3 [Mustela putorius furo]
Length = 513
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 33 LEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E +KED D P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 370 ITEESKEDCDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQ 429
Query: 91 PDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
D FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 430 EKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 489
Query: 150 GKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 490 GKPMVVQFARS 500
>gi|390480085|ref|XP_002807948.2| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 41 [Callithrix
jacchus]
Length = 437
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 301 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 356
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY +G+ ++I+FG+N
Sbjct: 357 QEKKGPAIQFRMMTGRMRGQAFITFPNKEVAWQALHLVNGYKLRGRILVIEFGKN 411
>gi|197099048|ref|NP_001126576.1| RNA-binding protein 40 [Pongo abelii]
gi|75070522|sp|Q5R6C7.1|RBM40_PONAB RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|55731961|emb|CAH92689.1| hypothetical protein [Pongo abelii]
Length = 517
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV
Sbjct: 432 EEKDLKYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
>gi|194228182|ref|XP_001492854.2| PREDICTED: RNA-binding protein 41 [Equus caballus]
Length = 413
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|40538732|ref|NP_060089.1| RNA-binding protein 40 [Homo sapiens]
gi|74760946|sp|Q96LT9.1|RBM40_HUMAN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3; AltName: Full=U11/U12 small
nuclear ribonucleoprotein 65 kDa protein; Short=U11/U12
snRNP 65 kDa protein; Short=U11/U12-65K
gi|16553747|dbj|BAB71580.1| unnamed protein product [Homo sapiens]
gi|37543954|gb|AAM45139.1| RNA recognition protein [Homo sapiens]
gi|48427628|tpg|DAA05493.1| TPA_exp: U11/U12 snRNP 65K [Homo sapiens]
gi|56969191|gb|AAH10697.2| RNA-binding region (RNP1, RRM) containing 3 [Homo sapiens]
gi|119593307|gb|EAW72901.1| hCG2044817 [Homo sapiens]
gi|119593311|gb|EAW72905.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|119593312|gb|EAW72906.1| hCG2044816, isoform CRA_a [Homo sapiens]
gi|208965476|dbj|BAG72752.1| RNA-binding region (RNP1, RRM) containing 3 [synthetic construct]
Length = 517
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
>gi|340725133|ref|XP_003400928.1| PREDICTED: RNA-binding protein 40-like [Bombus terrestris]
Length = 468
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 66/112 (58%)
Query: 48 TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA 107
T +L ++ + LP+FKNY G P++ LYIKNL K V D FI+
Sbjct: 353 TSNQLANNRISANDQRLLPVFKNYHPGKPSNRLYIKNLTKQVEEKDLHFIYRKYIVPELK 412
Query: 108 AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ V+LMQEGRM+GQAF+T +VE A ALN NG++ K KPM++QF +
Sbjct: 413 TEFEYDVRLMQEGRMKGQAFITLQTVEQAQLALNETNGFILKDKPMVVQFAK 464
>gi|332809668|ref|XP_003308296.1| PREDICTED: RNA-binding protein 40 isoform 1 [Pan troglodytes]
gi|410214446|gb|JAA04442.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410307708|gb|JAA32454.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
gi|410328887|gb|JAA33390.1| RNA-binding region (RNP1, RRM) containing 3 [Pan troglodytes]
Length = 517
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
>gi|350412501|ref|XP_003489669.1| PREDICTED: RNA-binding protein 40-like [Bombus impatiens]
Length = 468
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 66/112 (58%)
Query: 48 TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA 107
T +L ++ + LP+FKNY G P++ LYIKNL K V D FI+
Sbjct: 353 TSNQLANNRISANDQRLLPVFKNYHPGKPSNRLYIKNLTKQVEEKDLHFIYRKYIVPELK 412
Query: 108 AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ V+LMQEGRM+GQAF+T +VE A ALN NG++ K KPM++QF +
Sbjct: 413 TEFEYDVRLMQEGRMKGQAFITLQNVEQAQLALNETNGFILKDKPMVVQFAK 464
>gi|158260711|dbj|BAF82533.1| unnamed protein product [Homo sapiens]
Length = 516
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 371 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 430
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 431 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 490
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 491 FGKPMVVQFARS 502
>gi|14017895|dbj|BAB47468.1| KIAA1839 protein [Homo sapiens]
Length = 541
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 396 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 455
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 456 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 515
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 516 FGKPMVVQFARS 527
>gi|402855450|ref|XP_003892337.1| PREDICTED: RNA-binding protein 40 [Papio anubis]
Length = 518
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DIAEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
>gi|397495807|ref|XP_003818737.1| PREDICTED: RNA-binding protein 40 [Pan paniscus]
Length = 518
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 373 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 432
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 433 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 492
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 493 FGKPMVVQFARS 504
>gi|441637137|ref|XP_003282014.2| PREDICTED: RNA-binding protein 40 [Nomascus leucogenys]
Length = 517
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
>gi|344286338|ref|XP_003414916.1| PREDICTED: RNA-binding protein 41 [Loxodonta africana]
Length = 413
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPQVTEKDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAFVTFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFVTFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|335306381|ref|XP_003135343.2| PREDICTED: RNA-binding protein 41 [Sus scrofa]
Length = 412
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTEKDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILVIEFGKN 387
>gi|403283796|ref|XP_003933288.1| PREDICTED: RNA-binding protein 40-like [Saimiri boliviensis
boliviensis]
Length = 515
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 376 KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 435
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
+IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 436 YIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 495
Query: 155 IQFGRN 160
+QF R+
Sbjct: 496 VQFARS 501
>gi|116004451|ref|NP_001070585.1| RNA-binding protein 40 [Bos taurus]
gi|122144028|sp|Q3MHP0.1|RBM40_BOVIN RecName: Full=RNA-binding protein 40; AltName: Full=RNA-binding
motif protein 40; AltName: Full=RNA-binding
region-containing protein 3
gi|75775276|gb|AAI05166.1| RNA-binding region (RNP1, RRM) containing 3 [Bos taurus]
Length = 516
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 377 KDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 436
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 437 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 496
Query: 155 IQFGRN 160
+QF R+
Sbjct: 497 VQFARS 502
>gi|296489386|tpg|DAA31499.1| TPA: RNA-binding protein 40 [Bos taurus]
Length = 516
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 377 KDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 436
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 437 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 496
Query: 155 IQFGRN 160
+QF R+
Sbjct: 497 VQFARS 502
>gi|395821637|ref|XP_003784144.1| PREDICTED: RNA-binding protein 40 [Otolemur garnettii]
Length = 516
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 377 KEDSDDMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 436
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
+IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 437 YIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 496
Query: 155 IQFGRN 160
+QF R+
Sbjct: 497 VQFARS 502
>gi|440904280|gb|ELR54816.1| RNA-binding protein 40 [Bos grunniens mutus]
Length = 517
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 378 KDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 438 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|296208669|ref|XP_002751197.1| PREDICTED: RNA-binding protein 40 [Callithrix jacchus]
Length = 517
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 378 KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
+IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 438 YIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|410967851|ref|XP_003990427.1| PREDICTED: RNA-binding protein 40 [Felis catus]
Length = 517
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KED D P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 378 KEDCDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 438 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|426216081|ref|XP_004002297.1| PREDICTED: RNA-binding protein 40 [Ovis aries]
Length = 517
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 378 KDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 438 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|301790935|ref|XP_002930470.1| PREDICTED: RNA-binding protein 40-like, partial [Ailuropoda
melanoleuca]
Length = 589
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KED D P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 450 KEDCDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 509
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 510 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 569
Query: 155 IQFGRN 160
+QF R+
Sbjct: 570 VQFARS 575
>gi|281348278|gb|EFB23862.1| hypothetical protein PANDA_019892 [Ailuropoda melanoleuca]
Length = 411
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 275 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPGVTERDLV----SLFARF 330
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 331 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIARQALYLVNGYKLRGKILVIEFGKN 385
>gi|334350116|ref|XP_001378466.2| PREDICTED: RNA-binding protein 41-like [Monodelphis domestica]
Length = 550
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 18 KASQTEDKDDSVAKELE-EPN------KEDSDVKPFATPEELEMGKLPPEEILSLPMFKN 70
+A+Q E V K +E EP K+ ++V F + +++E +L E+I +PMF +
Sbjct: 379 QAAQAEGSSLHVVKAIESEPQQCLNEPKKLTEVVDFVSEDDIERNRLSEEDIRKIPMFAS 438
Query: 71 YAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
Y+ G P VLY+KNL+ V + SLF K L + GRM+GQAFVTF
Sbjct: 439 YSPGEPNKVLYLKNLSPRVTEKELV----SLFARFQEKKGPLIQFRVLTGRMKGQAFVTF 494
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
P++E+A +AL LVNGY GK ++I+FG+N
Sbjct: 495 PNMEMAQQALLLVNGYNLLGKTLVIEFGKN 524
>gi|283806648|ref|NP_060771.3| RNA-binding protein 41 isoform 1 [Homo sapiens]
gi|117949772|sp|Q96IZ5.2|RBM41_HUMAN RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|119623127|gb|EAX02722.1| hypothetical protein FLJ11016, isoform CRA_a [Homo sapiens]
gi|410223394|gb|JAA08916.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410259212|gb|JAA17572.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410291258|gb|JAA24229.1| RNA binding motif protein 41 [Pan troglodytes]
gi|410337931|gb|JAA37912.1| RNA binding motif protein 41 [Pan troglodytes]
Length = 413
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|403289583|ref|XP_003935931.1| PREDICTED: RNA-binding protein 41 [Saimiri boliviensis boliviensis]
Length = 438
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 301 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 356
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 357 QEKKGPPIQFRMMTGRMRGQAFITFPNEEIAWQALHLVNGYKLHGKILVIEFGKN 411
>gi|283806598|ref|NP_001164551.1| RNA-binding protein 41 isoform 2 [Homo sapiens]
gi|332861373|ref|XP_521210.3| PREDICTED: RNA-binding protein 41 isoform 4 [Pan troglodytes]
gi|397497857|ref|XP_003819720.1| PREDICTED: RNA-binding protein 41 [Pan paniscus]
gi|426396991|ref|XP_004064712.1| PREDICTED: RNA-binding protein 41 [Gorilla gorilla gorilla]
gi|7023419|dbj|BAA91957.1| unnamed protein product [Homo sapiens]
gi|119623128|gb|EAX02723.1| hypothetical protein FLJ11016, isoform CRA_b [Homo sapiens]
gi|410291256|gb|JAA24228.1| RNA binding motif protein 41 [Pan troglodytes]
Length = 405
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|332226063|ref|XP_003262208.1| PREDICTED: RNA-binding protein 41 [Nomascus leucogenys]
Length = 413
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>gi|345801621|ref|XP_547257.3| PREDICTED: RNA-binding protein 40 [Canis lupus familiaris]
Length = 518
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KED D P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 379 KEDCDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLK 438
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 439 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 498
Query: 155 IQFGRN 160
+QF R+
Sbjct: 499 VQFARS 504
>gi|74140935|dbj|BAE22060.1| unnamed protein product [Mus musculus]
Length = 514
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 39 EDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y KNLA+ V D F
Sbjct: 377 EDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYEKNLARHVQEKDLKF 436
Query: 97 IFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 437 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 496
Query: 156 QFGRN 160
QF R+
Sbjct: 497 QFARS 501
>gi|432108407|gb|ELK33158.1| RNA-binding protein 41, partial [Myotis davidii]
Length = 239
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 103 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 158
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K L M GRMRGQAF+TFP+ ++A +A +L+NGY GK ++I+FG+N
Sbjct: 159 QEKKGPLIQFRMMTGRMRGQAFITFPNKDIAWQAFHLINGYKLHGKILVIEFGKN 213
>gi|301788482|ref|XP_002929657.1| PREDICTED: RNA-binding protein 41-like [Ailuropoda melanoleuca]
Length = 484
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 348 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPGVTERDLV----SLFARF 403
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL LVNGY +GK ++I+FG+N
Sbjct: 404 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIARQALYLVNGYKLRGKILVIEFGKN 458
>gi|345807874|ref|XP_549173.3| PREDICTED: RNA-binding protein 41 [Canis lupus familiaris]
Length = 413
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 6/116 (5%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCG-LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K + ++M GRMRGQAF+TFP+ E+A +AL+LVNGY +GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRIMT-GRMRGQAFITFPNKEIAWQALHLVNGYKLRGKILVIEFGKN 387
>gi|351711954|gb|EHB14873.1| RNA-binding protein 41 [Heterocephalus glaber]
Length = 463
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 309 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 364
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
K M GRMRGQAF+TFPS E+A AL+L NGY GK ++I+FG+N +
Sbjct: 365 QEKKGPPIHFQMMTGRMRGQAFITFPSKEIAWEALHLANGYKLHGKILVIEFGKNKS 421
>gi|431905158|gb|ELK10209.1| RNA-binding protein 41 [Pteropus alecto]
Length = 535
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 399 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 454
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 455 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 509
>gi|13937775|gb|AAH06986.1| RNA binding motif protein 41 [Homo sapiens]
Length = 413
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 387
>gi|157108640|ref|XP_001650324.1| hypothetical protein AaeL_AAEL005083 [Aedes aegypti]
gi|108879289|gb|EAT43514.1| AAEL005083-PA [Aedes aegypti]
Length = 435
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 11/123 (8%)
Query: 51 ELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKC 110
+L ++PP+++ LP+FKNY G P++ LY+KNLAK V DD IF F
Sbjct: 302 DLLANRIPPDQLTDLPVFKNYTPGEPSNKLYLKNLAKTVTEDDLKRIFHR-FAITGHPDR 360
Query: 111 GLTVKLMQEGRMRGQAFVTFPSV-----ELAH-----RALNLVNGYVFKGKPMIIQFGRN 160
+ +KLMQ GRM+GQAFVTF + +L RAL L NG + K KPM++ +G++
Sbjct: 361 EIDIKLMQSGRMKGQAFVTFSYIYEEDLDLMEEKPIARALRLTNGLLLKDKPMVVAYGKS 420
Query: 161 PAA 163
AA
Sbjct: 421 SAA 423
>gi|47218419|emb|CAG12690.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 8/148 (5%)
Query: 14 KITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAA 73
K+ P A ++ +D+ E + P SDV + +ELE G+L +E+ + MF+NY
Sbjct: 346 KLYPSARPSQQEDEHCDDEHDLP----SDV---ISRKELEKGRLSKDEMKKISMFRNYEP 398
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
G P LY+KN+AK D +I+G S + + + LM+EGRM+GQAFV PS
Sbjct: 399 GEPTCRLYVKNIAKQAEEKDLKYIYGRYIDPSSEPERNMFDIMLMKEGRMKGQAFVGLPS 458
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A +AL NGYV KP+I++ ++
Sbjct: 459 EQSAEKALRETNGYVLYDKPLIVRLTKS 486
>gi|440791045|gb|ELR12299.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 401
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 52 LEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSL---FGSIDAA 108
+E +L EI LP F Y AG+P+ LYIKNLA+ +D IF S +
Sbjct: 274 IEAHRLALSEIRQLPRFAAYEAGSPSRTLYIKNLAETTTKEDLVRIFLSFQKPAEELRQD 333
Query: 109 KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GKPMIIQFGR 159
+ L +L+Q GRMRGQAFVTFPSVE A AL VNG+VFK GKP+II +G+
Sbjct: 334 RDYLEFRLLQ-GRMRGQAFVTFPSVEDAVAALAAVNGFVFKEGKPLIIHYGK 384
>gi|395854600|ref|XP_003799771.1| PREDICTED: RNA-binding protein 41 [Otolemur garnettii]
Length = 413
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSKEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG++
Sbjct: 333 QEKKGPPIQFQMMTGRMRGQAFITFPNTEMACQALHLVNGYKLHGKILVIEFGKS 387
>gi|170035116|ref|XP_001845417.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876969|gb|EDS40352.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 415
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 13/125 (10%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK 109
++L ++PP+++ LP+FKNY G P++ LYIKNLAK V D I+ +LF S +
Sbjct: 290 QDLLANRVPPDQLADLPVFKNYTPGAPSNKLYIKNLAKTVTEQDLTQIY-ALFTS--PGR 346
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSV---------EL-AHRALNLVNGYVFKGKPMIIQFGR 159
+ +KLMQ GRM+GQAFVTF E+ RA L NG++ + KPM++ +GR
Sbjct: 347 ADIQIKLMQSGRMKGQAFVTFSYAYPEDLDGLGEMPIERARRLTNGFILRDKPMVVCYGR 406
Query: 160 NPAAA 164
AA
Sbjct: 407 QEKAA 411
>gi|410989129|ref|XP_004000817.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 41 [Felis
catus]
Length = 593
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 349 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 404
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ ELA +AL+LVNGY +GK ++I+FG+N
Sbjct: 405 QEXKGPPIQFRMMTGRMRGQAFITFPNKELAQQALHLVNGYKLRGKILVIEFGKN 459
>gi|354505577|ref|XP_003514844.1| PREDICTED: RNA-binding protein 40-like [Cricetulus griseus]
Length = 356
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 38 KEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
K+DSD P + EL+ G++ EE+ +L +F++Y G P +Y+KNLA+ V D
Sbjct: 218 KDDSDEMPSQCISRRELDKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLK 277
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM+
Sbjct: 278 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMV 337
Query: 155 IQFGRNPAAAKP 166
+QF R +A+P
Sbjct: 338 VQFAR---SARP 346
>gi|363732706|ref|XP_426256.3| PREDICTED: RNA-binding protein 41 [Gallus gallus]
Length = 398
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F EE+ +L EE+ S+P F +Y G P VLY+KNL V D SLF
Sbjct: 266 FIPEEEIRKSRLSEEELRSIPRFSSYHPGEPNKVLYVKNLGPRVTMKDMV----SLFARF 321
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ +L+ GRMRGQAF+TFP ++ A A+ LVNGY +GKPM+I+FG++
Sbjct: 322 QQDSTPIQFRLL-SGRMRGQAFITFPDIQSAQDAMLLVNGYRLQGKPMVIEFGKS 375
>gi|327283480|ref|XP_003226469.1| PREDICTED: RNA-binding protein 41-like [Anolis carolinensis]
Length = 370
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F EE+ +L EEI +P F +Y G P+ VLY+KNL++ V +D +F
Sbjct: 201 FIPEEEICQSRLSEEEIRQIPRFASYDPGEPSQVLYLKNLSRQVTVEDLMSVFARF---- 256
Query: 106 DAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
K G ++ + GRMRGQAF+TFPS+ +A AL L +GY GKP++I+FG++
Sbjct: 257 -QEKEGPQIRFRLLSGRMRGQAFLTFPSISVAQAALQLASGYHLLGKPLVIEFGKSKGRP 315
Query: 165 KP 166
+P
Sbjct: 316 EP 317
>gi|239781821|pdb|3EGN|A Chain A, C-Terminal Rna Recognition Motif Of The U11U12 65K PROTEIN
Length = 143
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 77/128 (60%), Gaps = 3/128 (2%)
Query: 36 PNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDD 93
P DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 2 PLGSDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKD 61
Query: 94 FFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152
+IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKP
Sbjct: 62 LKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121
Query: 153 MIIQFGRN 160
M++QF R+
Sbjct: 122 MVVQFARS 129
>gi|417402186|gb|JAA47947.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 517
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAA 108
ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D FIFG S +
Sbjct: 392 RELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQ 451
Query: 109 KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++QF R+
Sbjct: 452 RIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503
>gi|126320999|ref|XP_001372243.1| PREDICTED: RNA-binding protein 41-like [Monodelphis domestica]
Length = 415
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 7/129 (5%)
Query: 33 LEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPD 92
L EP K+ ++V F +E+E +L E+I +PMF +Y+ G P VLY+KNL+ V
Sbjct: 267 LTEP-KKLTEVVEFVPEDEIERNRLSQEDIRKIPMFASYSPGEPNKVLYLKNLSPRVTEK 325
Query: 93 DFFFIFGSLFGSIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151
+ SLF K G ++ + GRM+GQAF+TFPS E+A +AL LVNGY GK
Sbjct: 326 ELV----SLFARFQEDK-GTPIQFRVLTGRMKGQAFITFPSTEMAQQALLLVNGYNLLGK 380
Query: 152 PMIIQFGRN 160
++I+FG++
Sbjct: 381 TLVIEFGKH 389
>gi|118094273|ref|XP_422302.2| PREDICTED: RNA-binding protein 40 [Gallus gallus]
Length = 550
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 82/148 (55%), Gaps = 19/148 (12%)
Query: 21 QTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVL 80
+TE++DD + E F + ELE +L EE+ +FKNY G P +
Sbjct: 409 ETEEEDDEIPSE-------------FISRRELEKNRLSREEMEKFSVFKNYEPGEPNCRI 455
Query: 81 YIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
Y+KNLAK V D FIFG F S+ + ++LM+EGRM+GQAF+ P+ + A +
Sbjct: 456 YVKNLAKQVQEKDLKFIFGRYVDFQSV-LERNMFDIRLMKEGRMKGQAFIGLPNEKAAAK 514
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
AL NGYV KPM++QF R +A+P
Sbjct: 515 ALKEANGYVLFEKPMVVQFAR---SARP 539
>gi|431896426|gb|ELK05838.1| Alpha-amylase 1 [Pteropus alecto]
Length = 937
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 33 LEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E +KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 357 IAEESKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQ 416
Query: 91 PDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
D FIFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV
Sbjct: 417 EKDLKFIFGRYVDFSSETERIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLF 476
Query: 150 GKPMII 155
GKPM++
Sbjct: 477 GKPMVV 482
>gi|74145491|dbj|BAE36180.1| unnamed protein product [Mus musculus]
Length = 513
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 39 EDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D F
Sbjct: 377 EDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKF 436
Query: 97 IFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 437 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 496
Query: 156 QFGRN 160
F R+
Sbjct: 497 -FARS 500
>gi|345328442|ref|XP_001514134.2| PREDICTED: RNA-binding protein 41-like [Ornithorhynchus anatinus]
Length = 411
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E+ +L EEI +P F +Y+ G P+ VLY+KNL+ V + +F
Sbjct: 275 FVPEDEIRRNRLSEEEIRKIPRFSSYSPGEPSKVLYLKNLSPRVTGKELVSLFARF---- 330
Query: 106 DAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K G ++ + GRMRGQAF+TFPS ELA +AL LVNG+ GK ++I+FG+N
Sbjct: 331 -QEKEGPQIQFRLLTGRMRGQAFITFPSTELAQQALLLVNGFNLLGKTLVIEFGKN 385
>gi|449513149|ref|XP_002190841.2| PREDICTED: RNA-binding protein 40-like, partial [Taeniopygia
guttata]
Length = 200
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 19/148 (12%)
Query: 21 QTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVL 80
+TE++DD + E F + ++LE +L EE+ +FKNY G+P +
Sbjct: 59 ETEEEDDEIPSE-------------FISRKDLEKNRLSREEMEKYSVFKNYEPGDPNCRI 105
Query: 81 YIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
Y+KNLAK V D FIFG F S + + ++LM+EGRM+GQAF+ P+ + A +
Sbjct: 106 YVKNLAKQVQEKDLKFIFGRYVDFQS-EVERNMFDIRLMKEGRMKGQAFIGLPNEKAAAK 164
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
AL NGYV KPM++QF R +A+P
Sbjct: 165 ALKEANGYVLFEKPMVVQFAR---SARP 189
>gi|444724714|gb|ELW65312.1| Pancreatic alpha-amylase [Tupaia chinensis]
Length = 1003
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 33 LEEPNKEDSDVKPFA--TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVI 90
+ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V
Sbjct: 334 ITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQ 393
Query: 91 PDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149
D +IFG + +A + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 394 EKDLKYIFGRYVDFTSEAQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 453
Query: 150 GKPMIIQFG 158
G+PM++Q G
Sbjct: 454 GRPMVVQLG 462
>gi|326924974|ref|XP_003208697.1| PREDICTED: RNA-binding protein 40-like [Meleagris gallopavo]
Length = 498
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 17/147 (11%)
Query: 21 QTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVL 80
+TE++DD + E F + ELE +L EE+ +FKNY G P +
Sbjct: 357 ETEEEDDEIPSE-------------FISRRELEKNRLSREEMEKFSVFKNYEPGEPNCRI 403
Query: 81 YIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
Y+KNLAK V D FIFG + + ++LM+EGRM+GQAF+ P+ + A +A
Sbjct: 404 YVKNLAKQVQEKDLKFIFGRYVDFESELERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKA 463
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAKP 166
L NGYV KPM++QF R +A+P
Sbjct: 464 LKEANGYVLFEKPMVVQFAR---SARP 487
>gi|224057266|ref|XP_002187421.1| PREDICTED: RNA-binding protein 40 [Taeniopygia guttata]
Length = 458
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 14/141 (9%)
Query: 21 QTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVL 80
+TE++DD + E F + ++LE +L EE+ +FKNY G+P +
Sbjct: 317 ETEEEDDEIPSE-------------FISRKDLEKNRLSREEMEKYSVFKNYEPGDPNCRV 363
Query: 81 YIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
Y+KNLAK V D FIFG + + ++LM+EGRM+GQAF+ P+ + A +A
Sbjct: 364 YVKNLAKQVQEKDLKFIFGRYVDFQSEVERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKA 423
Query: 140 LNLVNGYVFKGKPMIIQFGRN 160
L NGYV KPM++QF R+
Sbjct: 424 LKEANGYVLFEKPMVVQFARS 444
>gi|355558218|gb|EHH14998.1| hypothetical protein EGK_01023, partial [Macaca mulatta]
Length = 461
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQ 118
+E+ +L +F++Y G P +Y+KNLAK V D +IFG S + + ++LM+
Sbjct: 346 KEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK 405
Query: 119 EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
EGRM+GQAF+ P+ + A +AL NGYV GKPM++QF R+
Sbjct: 406 EGRMKGQAFIGLPNEKAATKALKEANGYVLFGKPMVVQFARS 447
>gi|330794186|ref|XP_003285161.1| hypothetical protein DICPUDRAFT_149032 [Dictyostelium purpureum]
gi|325084882|gb|EGC38300.1| hypothetical protein DICPUDRAFT_149032 [Dictyostelium purpureum]
Length = 496
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
K T E++ K EEI S+ K G P++ LYIKN++K V DF +F +LF
Sbjct: 378 KDIVTIEQINSNKCTVEEIESIIKGK-LNIGEPSNKLYIKNISKHVKSSDFESLFRTLFD 436
Query: 104 SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
S ++ K L + Q GR+ GQAF+TFP+ ELA AL GY F KP+II F +N
Sbjct: 437 SAESMKSNLHIDYHQGGRLHGQAFITFPTTELAITALQQSQGYKFNQKPIIICFSKN 493
>gi|326918852|ref|XP_003205700.1| PREDICTED: RNA-binding protein 41-like [Meleagris gallopavo]
Length = 305
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F EE+ +L EE+ ++P F +Y G P VLY+KNL V D +F F
Sbjct: 173 FIPEEEICKNRLSEEELRNIPRFSSYHPGEPNKVLYVKNLGPRVTMKDLVSLFAR-FQQE 231
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
D+ + +L+ GRMRGQAF+TFP ++ A A+ LVNGY +GKPM+I+FG++
Sbjct: 232 DSRP--IQFRLL-SGRMRGQAFITFPDIQSAQDAMLLVNGYRLQGKPMVIEFGKS 283
>gi|390351660|ref|XP_783188.3| PREDICTED: RNA-binding protein 40-like [Strongylocentrotus
purpuratus]
Length = 530
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F T E+L+ +L EEI + +FKNY G P + LY+KNLAK + D FIFG
Sbjct: 390 FITREQLKK-RLSKEEIKHISVFKNYTPGEPTTRLYVKNLAKQIEEKDLKFIFGRYVDWT 448
Query: 106 DAA-KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
K ++LM++GRM+GQAFV PS A RAL NG + KP+++ F R +A
Sbjct: 449 SPLDKDMFNIQLMKQGRMKGQAFVGLPSELAAQRALRDTNGLLVHDKPIVVSFAR---SA 505
Query: 165 KP 166
KP
Sbjct: 506 KP 507
>gi|339239559|ref|XP_003381334.1| transcription factor E2F5 [Trichinella spiralis]
gi|316975642|gb|EFV59050.1| transcription factor E2F5 [Trichinella spiralis]
Length = 879
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 45 PFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGS 104
P + EE++ ++ E++ LP FKNY+ G S LY+KNL+K V + IFG+ +
Sbjct: 762 PLISVEEIQRNRVDQEQMKLLPAFKNYSPGERCSRLYVKNLSKRVTDAEMRRIFGNFVQN 821
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ VK++Q GR+ GQAF+ F SVE A AL NGY+ GKPM++ F R+
Sbjct: 822 AESEH-QFHVKVIQTGRLHGQAFLAFGSVEEAEAALQSCNGYILHGKPMVVAFSRS 876
>gi|355745490|gb|EHH50115.1| hypothetical protein EGM_00887, partial [Macaca fascicularis]
Length = 515
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P + ELE G++ EE+ +L +F++Y G +Y+KNLAK V D
Sbjct: 378 KEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEQKCRIYVKNLAKHVQEKDLK 437
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
+IFG S + + ++LM+EGRM+GQAF P + A +AL NGYV GKPM+
Sbjct: 438 YIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFTALPKEKAAAKALKEANGYVLFGKPMV 497
Query: 155 IQFGRN 160
+QF R+
Sbjct: 498 VQFARS 503
>gi|348563749|ref|XP_003467669.1| PREDICTED: RNA-binding protein 41-like [Cavia porcellus]
Length = 460
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D +F
Sbjct: 324 FIPEDEIQRNRLSVEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARF---- 379
Query: 106 DAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
K G ++ M GRMRGQAF+TFP + A AL+LVNGY GK ++I+FG+
Sbjct: 380 -QEKTGPPIQFQMMTGRMRGQAFITFPDKKKAWEALHLVNGYKLHGKILVIEFGK 433
>gi|157821519|ref|NP_001102890.1| RNA binding motif protein 41 [Rattus norvegicus]
gi|149022081|gb|EDL78975.1| rCG26849, isoform CRA_a [Rattus norvegicus]
Length = 413
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K L M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 333 QEKKGPLIQFQMMTGRMRGQAFITFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>gi|391339586|ref|XP_003744129.1| PREDICTED: RNA-binding protein 40-like [Metaseiulus occidentalis]
Length = 361
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 61/106 (57%)
Query: 54 MGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLT 113
M +L ++ + F+NY G+ LY+KNL K ++ F +FG DA +
Sbjct: 250 MERLSIKDSIDHAAFRNYEEGDVCVRLYLKNLHKSTTEEELFSVFGQFVPDNDAERAIFD 309
Query: 114 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+KLM+ GRMRGQAFVT+ SV A RAL L N + GKPM +QF +
Sbjct: 310 IKLMKSGRMRGQAFVTYGSVPAAERALELTNRVILNGKPMSVQFAK 355
>gi|443687814|gb|ELT90688.1| hypothetical protein CAPTEDRAFT_200790 [Capitella teleta]
Length = 440
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-S 104
F + L G+L +E+ +FK Y +G P + LYIKNL+K V D I+G
Sbjct: 314 FISSRSLRKGRLSEKEMREYFVFKKYDSGEPTTRLYIKNLSKAVTEKDLHHIYGRYVNWE 373
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ + ++LM+EGRM+GQAFVT PSV A +A+ + ++ KP+++QF R +A
Sbjct: 374 NEQDRLMFDMRLMKEGRMKGQAFVTLPSVSQAEKAVRETHAFLLIDKPLVVQFAR---SA 430
Query: 165 KP 166
KP
Sbjct: 431 KP 432
>gi|395545742|ref|XP_003774757.1| PREDICTED: RNA-binding protein 41, partial [Sarcophilus harrisii]
Length = 465
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 38 KEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFI 97
K+ +++ F +E++ +L E+I +PMF +Y G P VLY+KNL+ V +
Sbjct: 321 KKVTELVEFVPEDEIKRNRLSEEDIRKIPMFASYNPGEPNKVLYLKNLSPRVTEKELV-- 378
Query: 98 FGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
SLF K + GRM+GQAFVTFP++E+A +AL LVNGY GK ++I+F
Sbjct: 379 --SLFARFQEKKGPPIQFRVLTGRMKGQAFVTFPNMEMAQQALLLVNGYNLLGKTLVIEF 436
Query: 158 GRN 160
G+N
Sbjct: 437 GKN 439
>gi|159163849|pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEI +PMF +Y G P VLY+KNL+ V D SLF K M
Sbjct: 8 EEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQFRMMT 63
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 64 GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104
>gi|449268122|gb|EMC78992.1| RNA-binding protein 40, partial [Columba livia]
Length = 449
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-S 104
F + +LE +L EE+ +FKNY G+P +Y+KNLAK V D FIFG
Sbjct: 320 FISRRDLEKNRLSREEMEKFSVFKNYEPGDPNCRIYVKNLAKQVQEKDLKFIFGRYVNFQ 379
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ + ++LM+EGRM+GQAF+ P+ + A +AL NGYV KPM++QF R +A
Sbjct: 380 SEEERNMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFEKPMVVQFAR---SA 436
Query: 165 KP 166
+P
Sbjct: 437 RP 438
>gi|340369585|ref|XP_003383328.1| PREDICTED: RNA-binding protein 40-like [Amphimedon queenslandica]
Length = 434
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 11/157 (7%)
Query: 9 PVLQIKITPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEI-LSLPM 67
P+ Q T +A+ D + + E P +ED F + EL++ ++ EE+ +
Sbjct: 279 PIQQEMETSQAAH----DAELNMQEESPLEED-----FISYAELQLNRISNEEMERDDGV 329
Query: 68 FKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQA 126
FKNY+ G P+ LYIKNL+K D I+G S + + V++MQ+GRM+GQA
Sbjct: 330 FKNYSKGEPSMRLYIKNLSKQATEKDLTRIYGRYINWSSEVERHSFDVRVMQQGRMKGQA 389
Query: 127 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 163
F+ P+ E+ +AL GY KPM++QF R+ A
Sbjct: 390 FIGMPNEEITSKALADTLGYKLYDKPMVVQFARSTKA 426
>gi|195431872|ref|XP_002063952.1| GK15943 [Drosophila willistoni]
gi|194160037|gb|EDW74938.1| GK15943 [Drosophila willistoni]
Length = 402
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 7/111 (6%)
Query: 52 LEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCG 111
+ M +L E+ +LP+++NY G P+ LYIKNL K+V ++G ++D
Sbjct: 290 ISMERLSLSELEALPIYRNYQEGIPSHKLYIKNLFKNVNEQQLLELYGKYVTTVD----H 345
Query: 112 LTVKLMQEGRMRGQAFVTFP---SVELAHRALNLVNGYVFKGKPMIIQFGR 159
L +K+MQ+GRM+GQAFVTF + + +AL+ NG V++ KPMI+ +G+
Sbjct: 346 LEIKVMQQGRMKGQAFVTFNEEVNQSIVAQALSETNGLVWQQKPMIVCYGK 396
>gi|354490313|ref|XP_003507303.1| PREDICTED: RNA-binding protein 41-like [Cricetulus griseus]
Length = 413
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF Y G P VLY+KNL+ V D SLF
Sbjct: 277 FIPEDEIQRNRLSEEEIRNIPMFSAYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K + GRMRGQAF+TFP+ ++A +A++ +NGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFQIMSGRMRGQAFITFPNKDIAWQAVHQINGYKLHGKILVIEFGKN 387
>gi|355715801|gb|AES05406.1| RNA binding motif protein 41 [Mustela putorius furo]
Length = 158
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 54 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 109
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
K M GRMRGQAF+TFPS E+A +AL LVNGY +GK ++
Sbjct: 110 QEKKGPPIQFRMMTGRMRGQAFITFPSKEIARQALYLVNGYKLRGKILV 158
>gi|196005337|ref|XP_002112535.1| hypothetical protein TRIADDRAFT_8568 [Trichoplax adhaerens]
gi|190584576|gb|EDV24645.1| hypothetical protein TRIADDRAFT_8568, partial [Trichoplax
adhaerens]
Length = 96
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
EEI ++ F +Y G P+ VLYIKNL+ V D F G + +K + +LM+
Sbjct: 1 EEIRAMARFAHYEQGEPSKVLYIKNLSDKVNEKDLVMTF---IGFQEDSKDNIRFRLMK- 56
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
G+M+GQAFVTF V A +AL++VNGY KGKPM+IQ+G+
Sbjct: 57 GKMKGQAFVTFSDVATAGKALDVVNGYKLKGKPMVIQYGK 96
>gi|158287033|ref|XP_560309.3| AGAP005296-PA [Anopheles gambiae str. PEST]
gi|157019820|gb|EAL41703.3| AGAP005296-PA [Anopheles gambiae str. PEST]
Length = 407
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 77/130 (59%), Gaps = 16/130 (12%)
Query: 45 PFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGS 104
P + +++ ++P E+ +L +F+NY+ G+P + LYIKNL+K V + +FG F +
Sbjct: 279 PLPSIDDILRNRIPEEQRSTLNVFQNYSRGDPTTKLYIKNLSKQVTEQELEELFGIFFNA 338
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA--------------HRALNLVNGYVFKG 150
+ K + +KLM+ GRM+GQAFVTF VE A +AL VNGY+ K
Sbjct: 339 -NLLK-SMEIKLMKTGRMKGQAFVTFVPVEDATEGEPLNEKFKNCIDQALATVNGYILKD 396
Query: 151 KPMIIQFGRN 160
KPM++ +G++
Sbjct: 397 KPMVVSYGKS 406
>gi|328872570|gb|EGG20937.1| RNA recognition motif-containing protein [Dictyostelium
fasciculatum]
Length = 454
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK 109
EEL ++P +E+ + K G + LY+KNL+KDV+ D +IFG F S
Sbjct: 315 EELTRNQIPLDELEKNVLKKKLEIGQESKRLYLKNLSKDVVLADLEYIFGRYFASKKEMN 374
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165
+ GR++ QAFV F S +A+ ALN V GY K KP+IIQ+G++ K
Sbjct: 375 DNCQITHFNSGRLKNQAFVVFSSQSIANDALNQVQGYNLKNKPIIIQYGKHSNVTK 430
>gi|23956384|ref|NP_705814.1| RNA-binding protein 41 isoform 2 [Mus musculus]
gi|81914521|sp|Q8JZV4.1|RBM41_MOUSE RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|22477722|gb|AAH37024.1| RNA binding motif protein 41 [Mus musculus]
gi|26351139|dbj|BAC39206.1| unnamed protein product [Mus musculus]
gi|26351197|dbj|BAC39235.1| unnamed protein product [Mus musculus]
gi|148691973|gb|EDL23920.1| RNA binding motif protein 41, isoform CRA_a [Mus musculus]
Length = 413
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>gi|288541344|ref|NP_001165618.1| RNA-binding protein 41 isoform 1 [Mus musculus]
Length = 425
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 289 FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 344
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 345 QEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 399
>gi|358335678|dbj|GAA40549.2| U11/U12 small nuclear ribonucleoprotein 65 kDa protein, partial
[Clonorchis sinensis]
Length = 466
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 12/145 (8%)
Query: 31 KELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMF-KNYAAGNPASVLYIKNLAKDV 89
+ + + + + DV + +EL + +L PEE + +F KNY+AG P S LYIKNLA V
Sbjct: 312 QSVSDQERPECDVSLSFSLDELRLRRLSPEERQNYAVFSKNYSAGEPTSRLYIKNLAPSV 371
Query: 90 IPDDFFFIFGSL-FGSI----------DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
D +FG FG + ++ +++L+ EGRM+GQAFV+ A +
Sbjct: 372 TEHDLHRVFGVFQFGLVKDLNFKPAVPSSSTDRFSIRLLTEGRMKGQAFVSLDGELTAAQ 431
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAA 163
AL NG + +PM++QF R A
Sbjct: 432 ALEATNGLLLHDRPMVVQFARGAKA 456
>gi|74218798|dbj|BAE37811.1| unnamed protein product [Mus musculus]
Length = 425
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 289 FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 344
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 345 QEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 399
>gi|449499257|ref|XP_002187011.2| PREDICTED: RNA-binding protein 41 [Taeniopygia guttata]
Length = 296
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L EE+ +P F +Y G P+ VLY+KNL V D SLF L
Sbjct: 173 RLSEEELRKIPRFSSYHPGEPSKVLYLKNLGPRVTVKDLV----SLFARFQEEDSPLIQF 228
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ GRMRGQAF+TFP + A AL L+NGY +GKP++I FG++
Sbjct: 229 RLLSGRMRGQAFITFPDMGSAQSALQLLNGYKLQGKPLVIAFGKS 273
>gi|328772571|gb|EGF82609.1| hypothetical protein BATDEDRAFT_86091 [Batrachochytrium
dendrobatidis JAM81]
Length = 401
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 62 ILSLPMFKNYAAGNPASVLYIKNLAKDVIPDD-FFFIFGSLFGSIDAAKCGLTVKLMQEG 120
+L LP +KNY G+P+ L+IKN+ + D +F + S + + V+LM++G
Sbjct: 302 LLQLPAYKNYNQGSPSKTLFIKNINYKRVSDSQLLNLFSKILPSSSLPENRIDVRLMKKG 361
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+M+GQAFV + + +LA ALNL +G + + KPM+IQFG+
Sbjct: 362 KMKGQAFVKYETTKLAETALNLFHGLILEEKPMVIQFGK 400
>gi|196009462|ref|XP_002114596.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
gi|190582658|gb|EDV22730.1| hypothetical protein TRIADDRAFT_58601 [Trichoplax adhaerens]
Length = 466
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 37 NKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
N ED D+ E+L ++ E+ L +++NY P LYIKNL+ V D +
Sbjct: 338 NVED-DMNDSIRLEDLRANRMSKIELQKLSVYQNYERKEPTGRLYIKNLSDKVKESDLIY 396
Query: 97 IFGSLFGSIDAAKCG-LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
I+ D + V+L+ GRM+GQAFV P +A A+N +GYV GKPMI+
Sbjct: 397 IYSRFINKDDNSHLDRFDVRLLTRGRMKGQAFVNLPDEVVATEAVNETHGYVLHGKPMIV 456
Query: 156 QFGR 159
F +
Sbjct: 457 DFAQ 460
>gi|256074910|ref|XP_002573765.1| hypothetical protein [Schistosoma mansoni]
gi|353231114|emb|CCD77532.1| hypothetical protein Smp_023270.1 [Schistosoma mansoni]
Length = 413
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLF-GSIDAA 108
+E+ +L E+ + P+F Y G S LY+KNL++ V D F IFG G + +
Sbjct: 278 DEIISNRLKDEDRRNYPVFAKYDTGTATSRLYVKNLSQTVTETDLFAIFGVFSNGPVTDS 337
Query: 109 KCG----------LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
C +++L+ EGRM+GQAF+ A +AL NGY+ +PM++QF
Sbjct: 338 SCKPRVSLDSTERFSIRLLTEGRMKGQAFIGLACELTAKQALEATNGYMLYDRPMVVQFA 397
Query: 159 RNPAAAKPN 167
R A AKP+
Sbjct: 398 RG-AKAKPD 405
>gi|256074908|ref|XP_002573764.1| hypothetical protein [Schistosoma mansoni]
gi|353231113|emb|CCD77531.1| hypothetical protein Smp_023270.2 [Schistosoma mansoni]
Length = 525
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLF-GSIDAA 108
+E+ +L E+ + P+F Y G S LY+KNL++ V D F IFG G + +
Sbjct: 390 DEIISNRLKDEDRRNYPVFAKYDTGTATSRLYVKNLSQTVTETDLFAIFGVFSNGPVTDS 449
Query: 109 KCG----------LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
C +++L+ EGRM+GQAF+ A +AL NGY+ +PM++QF
Sbjct: 450 SCKPRVSLDSTERFSIRLLTEGRMKGQAFIGLACELTAKQALEATNGYMLYDRPMVVQFA 509
Query: 159 RNPAAAKPN 167
R A AKP+
Sbjct: 510 RG-AKAKPD 517
>gi|328708090|ref|XP_003243595.1| PREDICTED: hypothetical protein LOC100569873 [Acyrthosiphon pisum]
Length = 379
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
K+ +++ ++P F+NY G P+ VLY+KN+AK V +FG + + A + +
Sbjct: 278 KINEDQLKTIPYFQNYQKGIPSKVLYVKNIAKSVCEKHLVSVFGK-YKELQNA--DIVYR 334
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
M++G+M+GQAF+ F +E+A +AL G + + KP+IIQFG+
Sbjct: 335 YMKKGKMKGQAFIEFEKIEVAEKALEENLGLILEEKPLIIQFGK 378
>gi|194756026|ref|XP_001960280.1| GF13283 [Drosophila ananassae]
gi|190621578|gb|EDV37102.1| GF13283 [Drosophila ananassae]
Length = 389
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 69/123 (56%), Gaps = 16/123 (13%)
Query: 49 PEELEMGKLPPE--------EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGS 100
PE L +L PE E+ LP++KNY G+P++ LYIKNL K V ++
Sbjct: 271 PESLNPSRLQPETEKRLSVSELQELPVYKNYKMGDPSNKLYIKNLDKSVDEQQLRQLYSK 330
Query: 101 LFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQF 157
AA+ L +K+MQ+GRM+GQAFVTF E RAL NG V+K KPMI+ F
Sbjct: 331 Y---TPAAQ--LDIKVMQQGRMKGQAFVTFLEGYRPEGIARALGETNGLVWKQKPMIVCF 385
Query: 158 GRN 160
G+
Sbjct: 386 GKQ 388
>gi|85857696|gb|ABC86383.1| IP10959p [Drosophila melanogaster]
Length = 407
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L + +LP++KNY G+P++ LYIKNLAK V ++ A L +K
Sbjct: 304 RLSTSALEALPVYKNYKTGDPSNKLYIKNLAKSVDEQQLRELYAKY-----TAASKLDIK 358
Query: 116 LMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+MQ+GRM+GQAFVTF E+ +ALN NG ++ KPMI+ +G+
Sbjct: 359 VMQQGRMKGQAFVTFLDANNPEIIAQALNETNGLLWHDKPMIVCYGKQ 406
>gi|384499818|gb|EIE90309.1| hypothetical protein RO3G_15020 [Rhizopus delemar RA 99-880]
Length = 294
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 23 EDKDDSVAKELEEPNKEDSDVKPFATPEELEMGK--------------LPPEEILSLPMF 68
E +D + +KE EE K+ + A + L + K L E+ P F
Sbjct: 149 EQEDATTSKEQEERVKQARQARIAAEKQRLALKKTKTIDKVQQIQSKCLASHELAQWPAF 208
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
K Y AG P++ LYIKNL K D I+ + I V LM++G++R QAFV
Sbjct: 209 KAYDAGEPSARLYIKNLHKKCSEQDLQQIYSAFSKDIQ-------VNLMRKGKLRDQAFV 261
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
TFP ++A AL NGYV +PM + F ++
Sbjct: 262 TFPDEKVAKLALESTNGYVLHDRPMAVLFSKS 293
>gi|194882084|ref|XP_001975143.1| GG22156 [Drosophila erecta]
gi|190658330|gb|EDV55543.1| GG22156 [Drosophila erecta]
Length = 397
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L ++ +LP++KNY G+P++ LYIKNL K V ++ A L +K
Sbjct: 294 RLSTSKLEALPVYKNYKTGDPSNKLYIKNLEKSVDEQQLRELYAKY-----TASSNLDIK 348
Query: 116 LMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+MQ+GRM+GQAFVTF ++ RALN NG + KPMI+ +G+
Sbjct: 349 VMQQGRMKGQAFVTFLEANNPDIIARALNETNGLLVHDKPMIVCYGKQ 396
>gi|195154278|ref|XP_002018049.1| GL16971 [Drosophila persimilis]
gi|194113845|gb|EDW35888.1| GL16971 [Drosophila persimilis]
Length = 386
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 71/107 (66%), Gaps = 8/107 (7%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L +E+ +LP++KNY G+P++ LYIKNL K++ + ++ S + + + L +K
Sbjct: 283 RLSIQELEALPVYKNYNEGDPSNKLYIKNLHKNIGEEQLRELY-SQYTTPE----NLEIK 337
Query: 116 LMQEGRMRGQAFVTF---PSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+MQ+GRM+GQAFVTF P E+ AL+ NG +++ KPMI+ +G+
Sbjct: 338 VMQQGRMKGQAFVTFIHLPDPEVIATALDETNGLLWEQKPMIVCYGK 384
>gi|320544222|ref|NP_726148.3| snipper, isoform I [Drosophila melanogaster]
gi|318068664|gb|AAM68198.3| snipper, isoform I [Drosophila melanogaster]
Length = 407
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 8/108 (7%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L + +LP++KNY G+P++ LYIKNLAK V ++ A L +K
Sbjct: 304 RLSTSALEALPVYKNYKTGDPSNKLYIKNLAKSVDEQQLRELYAKY-----TAASKLDIK 358
Query: 116 LMQEGRMRGQAFVTFPSV---ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+M +GRM+GQAFVTF E+ +ALN NG ++ KPMI+ +G+
Sbjct: 359 VMHQGRMKGQAFVTFLDANNPEIIAQALNETNGLLWHDKPMIVCYGKQ 406
>gi|195486292|ref|XP_002091444.1| GE12236 [Drosophila yakuba]
gi|194177545|gb|EDW91156.1| GE12236 [Drosophila yakuba]
Length = 408
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L E+ +LP++KNY G+P++ LYIKNL K V ++ A L +K
Sbjct: 305 RLSTSELEALPVYKNYKTGDPSNKLYIKNLEKSVDEQQLRELYAKY-----TAPSNLDIK 359
Query: 116 LMQEGRMRGQAFVTF---PSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+MQ+GRM+GQAFVTF + E+ +AL+ NG ++ KPMI+ +G+
Sbjct: 360 VMQQGRMKGQAFVTFIEGNNPEIIAQALSETNGLLWHDKPMIVCYGK 406
>gi|198460375|ref|XP_002138823.1| GA25008 [Drosophila pseudoobscura pseudoobscura]
gi|198136994|gb|EDY69381.1| GA25008 [Drosophila pseudoobscura pseudoobscura]
Length = 386
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 70/107 (65%), Gaps = 8/107 (7%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+L E+ +LP++KNY G+P++ LYIKNL K++ + ++ S + + + L +K
Sbjct: 283 RLSIRELEALPVYKNYNEGDPSNKLYIKNLHKNIGEEQLRELY-SQYTTPE----NLEIK 337
Query: 116 LMQEGRMRGQAFVTF---PSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+MQ+GRM+GQAFVTF P E+ AL+ NG +++ KPMI+ +G+
Sbjct: 338 VMQQGRMKGQAFVTFIHLPDPEVIATALDETNGLLWEQKPMIVCYGK 384
>gi|76162613|gb|AAX30555.2| SJCHGC05002 protein [Schistosoma japonicum]
Length = 152
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLF-GSIDAA 108
+E+ +L E+ P+F Y AG P S LY+KNL++ V D F IFG G + +
Sbjct: 17 DEIISNRLKAEDHNKYPVFAKYDAGTPTSRLYLKNLSQTVTETDLFVIFGVFSNGPVTES 76
Query: 109 KCG----------LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
+++L+ EGRM+GQAF+ A +AL NGY+ +P+++QF
Sbjct: 77 SWKPIIPLESTEYFSIRLLTEGRMKGQAFIGLACESTAKQALEATNGYMLYDRPIVVQFA 136
Query: 159 RNPAA 163
R A
Sbjct: 137 RGAKA 141
>gi|169146105|emb|CAQ15372.1| novel protein [Danio rerio]
Length = 425
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK 109
EE++ + E I ++P FKNY G P+ VL +KN++ P SLF +
Sbjct: 292 EEIKSNRETEEAIRNIPRFKNYQRGKPSKVLCVKNIS----PQASLAQLVSLFSRFQKDE 347
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + GR++GQAF+T P ++A AL+L+NGY KP++I+FGR
Sbjct: 348 SQPILYRLLTGRLKGQAFITLPDAKIAQAALDLLNGYKLLEKPLVIEFGR 397
>gi|302773161|ref|XP_002969998.1| hypothetical protein SELMODRAFT_92344 [Selaginella moellendorffii]
gi|302799422|ref|XP_002981470.1| hypothetical protein SELMODRAFT_114507 [Selaginella moellendorffii]
gi|300151010|gb|EFJ17658.1| hypothetical protein SELMODRAFT_114507 [Selaginella moellendorffii]
gi|300162509|gb|EFJ29122.1| hypothetical protein SELMODRAFT_92344 [Selaginella moellendorffii]
Length = 83
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
+ VLY+KNL +V +D +F D + +LMQ+GRM+GQAFVTFP V A
Sbjct: 1 SQVLYVKNLCSEVTEEDLAALFLRFKKQPDDQ---ILFRLMQKGRMKGQAFVTFPDVVAA 57
Query: 137 HRALNLVNGYVFKGKPMIIQFGRN 160
RAL LV+GY+ KG+PMI+++ R
Sbjct: 58 TRALQLVHGYMLKGRPMIVEYARG 81
>gi|410914938|ref|XP_003970944.1| PREDICTED: RNA-binding protein 41-like [Takifugu rubripes]
Length = 375
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK 109
EE+ + E I S+P F+ Y G P+ VL +KNL++ +LF +
Sbjct: 259 EEILKNRESDEGIRSIPRFQKYQPGKPSKVLCVKNLSRQASVAQLV----ALFSRFEREN 314
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + GRMRGQAF+T P VE A AL +V+GY GKP++++FGR
Sbjct: 315 RPPVLYRLLTGRMRGQAFITLPDVETAQNALQMVHGYRGLGKPLVVEFGR 364
>gi|195027067|ref|XP_001986405.1| GH20545 [Drosophila grimshawi]
gi|193902405|gb|EDW01272.1| GH20545 [Drosophila grimshawi]
Length = 403
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 18/127 (14%)
Query: 47 ATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSID 106
+T E+L +L E++ +LP++KNY G P++ LYIKNL K V+ ++ + D
Sbjct: 277 STDEQLPEERLTLEQLQALPIYKNYKRGEPSNKLYIKNLDKSVMESQLRLLYAR-YAPAD 335
Query: 107 AAKCGLTVKLMQEGRMRGQAFVTFPSVE-------------LAHRALNLVNGYVFKGKPM 153
+ L +K+MQ+GRM+GQAF+TF + + +AL NG ++ KPM
Sbjct: 336 S----LDIKVMQQGRMKGQAFITFQKLSNTDTIADADAAAVVVAQALMATNGLLWHQKPM 391
Query: 154 IIQFGRN 160
I+ +G+
Sbjct: 392 IVCYGKQ 398
>gi|357620404|gb|EHJ72608.1| hypothetical protein KGM_12871 [Danaus plexippus]
Length = 367
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 43 VKPFATPEE--LEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGS 100
V P EE LE K+ ++I + FK+Y G P+ VL++KN++ + + +F
Sbjct: 242 VVPVNAAEEQLLEGTKMCLDDIKKIERFKDYEPGIPSKVLFLKNISPSITQEQLSLLFNQ 301
Query: 101 LFGSIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ G V+L + G MRGQAFVTF S +LA +AL VNG + G+P+I QFGR
Sbjct: 302 FH-----LENGGPVQLRLMTGWMRGQAFVTFQSEDLAIQALEEVNGTIMGGQPIIAQFGR 356
Query: 160 N 160
N
Sbjct: 357 N 357
>gi|55925333|ref|NP_001007406.1| RNA-binding protein 41 [Danio rerio]
gi|55250637|gb|AAH85431.1| RNA binding motif protein 41 [Danio rerio]
Length = 439
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 50 EELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK 109
EE++ + E I ++P FKNY G P+ VL +KN++ P SLF +
Sbjct: 306 EEIKSNRETEEAIRNIPRFKNYQRGKPSKVLCVKNIS----PRASLAQLVSLFSRFQKDE 361
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + GR++GQAF+T ++A AL+L+NGY KP++I+FGR
Sbjct: 362 SQPILYRLLTGRLKGQAFITLADAKIAQAALDLLNGYKLLEKPLVIEFGR 411
>gi|348531972|ref|XP_003453481.1| PREDICTED: RNA-binding protein 41-like [Oreochromis niloticus]
Length = 443
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 48 TPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA 107
T EE+ + E I S+P F+NY G P+ VL +KNL+ P +LF +
Sbjct: 319 TDEEILKNRESEEGIRSIPRFRNYQPGKPSKVLCVKNLS----PQASVAQLVALFSRFER 374
Query: 108 AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
+ + GRM+GQAF+T P E A AL LV+ Y GKP++++FG
Sbjct: 375 KDGPPVLYRVLTGRMKGQAFITLPDAETAQNALQLVHRYRLLGKPLVVEFG 425
>gi|301106957|ref|XP_002902561.1| hypothetical protein PITG_10025 [Phytophthora infestans T30-4]
gi|262098435|gb|EEY56487.1| hypothetical protein PITG_10025 [Phytophthora infestans T30-4]
Length = 109
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 68 FKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRG 124
K Y G P++ LY+KNLAK V D F +FG++ ++A L ++ EGRM+
Sbjct: 19 MKKYQPGQPSNSLYVKNLAKTVELVDLFAVFGAVLPPESGLEA----LNIRHFTEGRMKC 74
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
QAFVT+PSV+LA AL V+G + K KP+I+
Sbjct: 75 QAFVTYPSVDLASSALLHVHGVILKDKPLIV 105
>gi|66826411|ref|XP_646560.1| hypothetical protein DDB_G0270734 [Dictyostelium discoideum AX4]
gi|60474780|gb|EAL72717.1| hypothetical protein DDB_G0270734 [Dictyostelium discoideum AX4]
Length = 578
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P + +YIKN++K DF +F F S+ K L + +EG++R QAF+TFP++
Sbjct: 491 GEPTNKIYIKNISKHASYQDFQSLFRRHFNSVTEMKKQLIIDYHKEGKLRNQAFITFPTI 550
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+LA ALN G+ KP++I F +N
Sbjct: 551 QLATLALNQTQGFKLHQKPILILFSKN 577
>gi|348681873|gb|EGZ21689.1| hypothetical protein PHYSODRAFT_493685 [Phytophthora sojae]
Length = 144
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Query: 43 VKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLF 102
V+P+ T E+L +LP ++ + K Y G P+ LY+KNLAK V D +F ++
Sbjct: 4 VQPW-TLEQLASKRLPDAQLAGEKVMKKYQRGQPSDTLYVKNLAKAVELADLLAVFSAVL 62
Query: 103 GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+ L ++ EGRM+ QAFV +P+VELA AL V+G V K KP+I+
Sbjct: 63 PPESGPEV-LDIRHFTEGRMKCQAFVKYPTVELASGALLQVHGVVLKEKPLIV 114
>gi|443689346|gb|ELT91761.1| hypothetical protein CAPTEDRAFT_191651 [Capitella teleta]
Length = 484
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 40 DSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFG 99
D++VK PE + +L ++I +P F +Y G P L++KNL V + F
Sbjct: 363 DTEVKVIP-PEVIATNRLSLDQIRGIPKFSDYQRGEPTETLFVKNLHPSVDEAELSSPFL 421
Query: 100 SLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
S + + + +L+ GRM+GQAFV FP+ A ALN +NG+ K +PMIIQF R
Sbjct: 422 SF---QEEGEERIIFRLLC-GRMKGQAFVRFPNTTSASAALNAINGFRLKDRPMIIQFAR 477
Query: 160 N 160
Sbjct: 478 T 478
>gi|195122904|ref|XP_002005950.1| GI18815 [Drosophila mojavensis]
gi|193911018|gb|EDW09885.1| GI18815 [Drosophila mojavensis]
Length = 416
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 20/122 (16%)
Query: 49 PEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAA 108
PEE +L E++ LP++KNY G P++ LYIKNL K + ++ A
Sbjct: 293 PEE----RLSAEQLQELPVYKNYKVGEPSNKLYIKNLDKSITESQLSALYARY-----AP 343
Query: 109 KCGLTVKLMQEGRMRGQAFVTFPSVE-----------LAHRALNLVNGYVFKGKPMIIQF 157
L +K+MQ+GRM+GQAFVTF ++ + +AL+ NG +++ KPMI+ +
Sbjct: 344 AESLDIKVMQQGRMKGQAFVTFKQLDSDGASAEALAAVVAKALSETNGLLWQQKPMIVCY 403
Query: 158 GR 159
G+
Sbjct: 404 GK 405
>gi|300175584|emb|CBK20895.2| unnamed protein product [Blastocystis hominis]
Length = 420
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 31 KELEEPNKEDSDVK---PFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAK 87
KE+ EP ++ D T EE++ +L EE+ SL K G P + LY++NL+
Sbjct: 297 KEIVEPKQQIDDKAVNFRHITDEEIDRNRLSEEELASL---KPTKEGCPNNTLYVRNLSP 353
Query: 88 DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 147
++ ++ +FG S G V + GRM+GQAF+TFP +E A + ++G+V
Sbjct: 354 NISKEELVDLFGRFERS-----PGEFVYTLLTGRMKGQAFITFPDLETAEKVKRKLHGFV 408
Query: 148 FKGKPMIIQFGR 159
GKP+++Q+ R
Sbjct: 409 LNGKPLLLQYKR 420
>gi|47209961|emb|CAF92810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 375
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
E I +P F++Y G P+ VL +KNL+ +F S F + + + +L+
Sbjct: 280 EGIRKIPRFQSYRPGTPSKVLCVKNLSGHASVAQLVALF-SRFQQEN--RPPVLYRLL-T 335
Query: 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
GRM+GQAF+T P VE A RAL LV+GY G+P++++FG
Sbjct: 336 GRMKGQAFITLPDVETAQRALQLVHGYRGLGRPLVLEFG 374
>gi|281209438|gb|EFA83606.1| hypothetical protein PPL_02672 [Polysphondylium pallidum PN500]
Length = 620
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 86 AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 145
AKD+ DDF+++FG F S K + + +EGRM+ QAF+T P++ELA ALN + G
Sbjct: 291 AKDLENDDFYYLFGRYFESDTTMKEQMNIVHYKEGRMKQQAFITLPTIELAVDALNELQG 350
Query: 146 YVFKGKPMII 155
+ K KP+II
Sbjct: 351 FKLKDKPLII 360
>gi|440800549|gb|ELR21585.1| ABC2 type transporter superfamily protein [Acanthamoeba castellanii
str. Neff]
Length = 541
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 68 FKNYAAGNPASVLYIKNL--AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
+ Y G P+ L++KNL K++ P + +FGS F + + + +K+M GRM GQ
Sbjct: 441 YDKYQPGTPSHKLHLKNLHRKKEISPSELLRLFGS-FVAPGQSPNDIEIKVMT-GRMSGQ 498
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
AFVT S ELA +AL V+GYV G P+++++GR A KP
Sbjct: 499 AFVTLASQELATQALAAVHGYVLHGLPILVEYGRE-AKGKP 538
>gi|442760863|gb|JAA72590.1| Hypothetical protein, partial [Ixodes ricinus]
Length = 91
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 7/88 (7%)
Query: 83 KNLAKDVIPDDFFFIFGSLFGSIDAA----KCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+++AK V +D F I+G G +D + ++LM+EGRM+GQAF+TF S A R
Sbjct: 4 EDVAKGVEVEDLFRIYG---GYVDVKSELERYTFDIRLMKEGRMKGQAFLTFASESQAER 60
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
A NG++ KG+P+++ F R+ A P
Sbjct: 61 ARRDTNGFLLKGRPLVVHFTRSAKAKGP 88
>gi|325181334|emb|CCA15749.1| nucleoside diphosphate kinase B putative [Albugo laibachii Nc14]
Length = 846
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 39 EDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIF 98
E D + +L+ ++ E+ S +NY G + LY+KN+A+ V D F IF
Sbjct: 557 EGFDASTVWSHADLDFKRMNKAELNSQKAMRNYENGRVSRSLYVKNIAEKVTLFDLFAIF 616
Query: 99 GSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G++ S A L V +G+M+GQAF+ F LA +AL ++G V KP+II
Sbjct: 617 GAVVPSEKLA--FLRVAHFTKGKMKGQAFIEFSEPSLAIQALERIHGVVISKKPLII 671
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 51 ELEMGKLPPEEILSLPMFK------------NYAAGNPASVLYIKNLAKDVIPDDFFFIF 98
+LE +LPP I+ F+ +Y+ G P++ + + NL + + +F
Sbjct: 412 QLEKMRLPPSAIVFNITFRYVDLLSWESTLQSYSVGMPSATVMVSNLPPSIDMKNLTHLF 471
Query: 99 GSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
+ ID + + V Q +A + +PS+ +A +A+ ++G V +GKP+I++F
Sbjct: 472 SYVLPPEIDTKELMIEVDSEQ-----SEARIDYPSLGIAAKAVTQLHGVVLEGKPLIVRF 526
Query: 158 GRNPAAAK 165
+ K
Sbjct: 527 TSDTQRTK 534
>gi|288541346|ref|NP_001165619.1| RNA-binding protein 41 isoform 3 [Mus musculus]
gi|74139275|dbj|BAE38514.1| unnamed protein product [Mus musculus]
Length = 404
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
K M GRMRGQAF+TFP ++ R
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFLTFPRERISRR 365
>gi|444524214|gb|ELV13781.1| RNA-binding protein 41 [Tupaia chinensis]
Length = 331
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 26 DDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNL 85
D S + EP K ++ F +E++ +L EEI +PMF +Y G P VLY+KNL
Sbjct: 103 DFSPEQCWTEPKKLTQPIE-FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNL 161
Query: 86 AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
+ V D SLF K M GRMRGQAF+TFP+
Sbjct: 162 SPHVTERDLV----SLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 204
>gi|156365749|ref|XP_001626806.1| predicted protein [Nematostella vectensis]
gi|156213695|gb|EDO34706.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 62/173 (35%)
Query: 51 ELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKC 110
E+ +L +EI +P FK+YA G P+ L++KNL+ V +D +F F A K
Sbjct: 264 EILHNRLSIDEIKQIPRFKDYAPGEPSKTLFLKNLSNKVKEEDLIRLFLR-FQQNGAPK- 321
Query: 111 GLTVKLMQEGRMRGQAFVTFPS-------------------------------------- 132
L +LM+ GRM+GQAFVTFP
Sbjct: 322 -LVFRLMK-GRMKGQAFVTFPDKISVFVKGGRSELNPVTPQSKAHASGDPFVRVFIYIAF 379
Query: 133 VELAHRALNLV--------------------NGYVFKGKPMIIQFGRNPAAAK 165
+ H + +LV NGY KG+P+II+FGR A+
Sbjct: 380 ISTIHLSTSLVKGRSTTLVDSEVAIKAHSLVNGYRLKGRPVIIEFGRKREKAQ 432
>gi|19113216|ref|NP_596424.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe
972h-]
gi|74676131|sp|O74968.1|RU1A_SCHPO RecName: Full=U1 small nuclear ribonucleoprotein usp102; Short=U1
snRNP protein usp102
gi|3169094|emb|CAA19287.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe]
Length = 249
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P K + P+ LYI+N+ + + I LFGS + V+ + RMRGQ
Sbjct: 14 PSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKV---IDVQARKTLRMRGQ 70
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
AFV F ++E A RAL + GY GKPM+IQ+ ++
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
>gi|344256974|gb|EGW13078.1| RNA-binding protein 41 [Cricetulus griseus]
Length = 385
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF Y G P VLY+KNL+ V D SLF
Sbjct: 301 FIPEDEIQRNRLSEEEIRNIPMFSAYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 356
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPS 132
K + GRMRGQAF+TFP+
Sbjct: 357 QEKKGPPIQFQIMSGRMRGQAFITFPT 383
>gi|167537765|ref|XP_001750550.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770971|gb|EDQ84646.1| predicted protein [Monosiga brevicollis MX1]
Length = 345
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LYI NL++ V D+ ++F L V M + RGQAFV F S+E
Sbjct: 95 PNQTLYINNLSERVKEDELKKALEAIFNQFGKI---LRVVAMSSFKRRGQAFVVFDSIEA 151
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRN 160
A +ALN + + F GKPM I F +
Sbjct: 152 AEKALNAMQSFPFCGKPMRINFAKT 176
>gi|449688545|ref|XP_002169375.2| PREDICTED: uncharacterized protein LOC100199875, partial [Hydra
magnipapillata]
Length = 634
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 62 ILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR 121
ILS+ FKNY AG+P +LYIKNL+K++ + +FG F + ++ V +G
Sbjct: 565 ILSMEKFKNYKAGSPTRILYIKNLSKNIKECNLAELFGR-FCVNNPSEVKYQV---MKGL 620
Query: 122 MRGQAFVTF 130
MRGQAFVTF
Sbjct: 621 MRGQAFVTF 629
>gi|268553735|ref|XP_002634854.1| C. briggsae CBR-RNP-3 protein [Caenorhabditis briggsae]
Length = 220
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPS 132
NP +Y+ NL + V D+ +F A+ G ++LM ++ RMRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKRDELKRSLHMIF-----AQYGEIIQLMSFRKERMRGQAHIVFKE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>gi|428182625|gb|EKX51485.1| hypothetical protein GUITHDRAFT_159319 [Guillardia theta CCMP2712]
Length = 237
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LYI NL +K V+ + + + S FG + L V ++ G+MRGQAFV F
Sbjct: 21 PNQTLYINNLNDKISKQVLRSELY-VLCSQFGGV------LDVVALKTGKMRGQAFVVFQ 73
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ A AL + G+ F GKPM F R +
Sbjct: 74 QLTAASVALQKLQGFEFYGKPMRTAFCRTKS 104
>gi|270005656|gb|EFA02104.1| hypothetical protein TcasGA2_TC007748 [Tribolium castaneum]
Length = 337
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 54 MGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLT 113
+ KL EEI +LP F+NY G P++VL++KNLA + D IF AK L+
Sbjct: 265 VTKLSLEEIRNLPKFQNYDKGTPSNVLFLKNLANGLDQSDLETIFQKF------AKEILS 318
Query: 114 VKLMQEGRMRGQAFV 128
+++M G M+GQAF+
Sbjct: 319 IRVMT-GLMQGQAFI 332
>gi|50551429|ref|XP_503188.1| YALI0D23375p [Yarrowia lipolytica]
gi|49649056|emb|CAG81388.1| YALI0D23375p [Yarrowia lipolytica CLIB122]
Length = 146
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 54 MGKLPPEEIL---SLPMFKNYAAGN---PASVLYIKNLAKDVIPDD---FFFIFGSLFGS 104
MGK E L P K+ G+ P+ LY+KNL D + ++ S +G
Sbjct: 1 MGKTKRESALVESKRPAKKSKTDGDEPTPSPTLYVKNLTDKCTKSDLKRYLYMRFSSYGH 60
Query: 105 IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
I L + M+ RMRGQA V F ++ + ALN + F GK M+I++ R+ + A
Sbjct: 61 I------LDIVAMKNERMRGQAHVVFNDIDASISALNGLQKSEFMGKEMVIEYARSKSHA 114
>gi|189236031|ref|XP_968049.2| PREDICTED: similar to rac serine/threonine kinase [Tribolium
castaneum]
Length = 1859
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
KL EEI +LP F+NY G P++VL++KNLA + D IF AK L+++
Sbjct: 1285 KLSLEEIRNLPKFQNYDKGTPSNVLFLKNLANGLDQSDLETIFQKF------AKEILSIR 1338
Query: 116 LMQEGRMRGQAFV 128
+M G M+GQAF+
Sbjct: 1339 VMT-GLMQGQAFI 1350
>gi|392597982|gb|EIW87304.1| RNA binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 263
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
N + LYI+NL + + D SLF + L V RMRGQAFV+F S E
Sbjct: 35 NVSETLYIQNLNEKIKVDVIKQSLRSLFKTYGEV---LDVVAHSNLRMRGQAFVSFESPE 91
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+A +A+ V G+ KPM I F R+ + A
Sbjct: 92 VAKKAMEEVRGFPLYNKPMQISFARSRSDA 121
>gi|426200920|gb|EKV50843.1| hypothetical protein AGABI2DRAFT_189187 [Agaricus bisporus var.
bisporus H97]
Length = 292
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG--RMRGQAFVTFPS 132
NP LYI+NL + V P LF S G + ++ G RMRGQAFV+F S
Sbjct: 64 NPCETLYIQNLNEKVKPQVLQATLRGLFKSY-----GDVLDVVAHGNMRMRGQAFVSFDS 118
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V+ A +A+ V + KPM I F + + A
Sbjct: 119 VDSARKAMKDVQRFPLYSKPMQITFAKTRSDA 150
>gi|432901695|ref|XP_004076901.1| PREDICTED: RNA-binding protein 41-like [Oryzias latipes]
Length = 434
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 60 EEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE 119
E I S+P F+NY G P+ VL +KN++ +F S F DAA + +L+
Sbjct: 320 EAIRSIPRFRNYQPGKPSKVLCVKNVSTHASLAQLVALF-SRFEKKDAAP--ILYRLLT- 375
Query: 120 GRMRGQAFVTFP--SVELAHRALNLVNGYVF-KGKPMIIQFGRNPAAAKP 166
GRM+GQAFVT P S A NL F +P +P +KP
Sbjct: 376 GRMKGQAFVTLPESSTSSASARCNLTIPLAFLSRRPPAADLHSSPLRSKP 425
>gi|17541322|ref|NP_500505.1| Protein RNP-3 [Caenorhabditis elegans]
gi|351064353|emb|CCD72714.1| Protein RNP-3 [Caenorhabditis elegans]
Length = 217
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPS 132
NP +Y+ NL + V D+ +F + G ++LM ++ +MRGQA + F
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVF-----TQFGEIIQLMSFRKEKMRGQAHIVFKE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F GKPM IQ+ R
Sbjct: 60 VSSASNALRALQGFPFYGKPMRIQYAR 86
>gi|430811247|emb|CCJ31263.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 367
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNLAK----DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P+ +YI+NL++ D++ +F S +G+I L + + RMRGQAFV F
Sbjct: 27 PSETIYIRNLSEKVKIDILKKSLEAVFSS-YGTI------LDIIAHKNIRMRGQAFVVFD 79
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
S++ A +A+ V + KPM++Q+ + + A
Sbjct: 80 SIDSAQKAIADVQAFTLFDKPMVLQYSKTKSDA 112
>gi|336365379|gb|EGN93730.1| hypothetical protein SERLA73DRAFT_189480 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377939|gb|EGO19099.1| hypothetical protein SERLADRAFT_480314 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG--RMRGQAFVTFPSVE 134
+ LYI+NL + + D LF S G + ++ G RMRGQAFV+F S E
Sbjct: 36 SETLYIQNLNEKIKIDVLKASLRGLFKS-----YGEVLDVVAHGNLRMRGQAFVSFDSAE 90
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+A +A+ V G+ KPM I F R + A
Sbjct: 91 VAKKAMKEVRGFPLYSKPMQISFARTRSDA 120
>gi|451849890|gb|EMD63193.1| hypothetical protein COCSADRAFT_38066 [Cochliobolus sativus ND90Pr]
Length = 326
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +VLYI NL +V PD +F S FG I++ K + G RG A+V + +V
Sbjct: 134 PHNVLYIGNLYYEVTPDQLKRVF-SRFGDIESIK----IVYDNRGLSRGFAYVEYKNVSD 188
Query: 136 AHRALNLVNGYVFKGKPMIIQF---------GRNPAAAKPN 167
A A++ ++ VF+G+ +++QF GR P +PN
Sbjct: 189 AQAAIDNLDMQVFEGRNLVVQFHAPKYQPAKGRGPNGNEPN 229
>gi|322796377|gb|EFZ18918.1| hypothetical protein SINV_15250 [Solenopsis invicta]
Length = 207
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 19 ASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPAS 78
++TED DS NK F T EEL K+ + LP+FKNY G P++
Sbjct: 121 VNKTEDAKDSEESAETPKNK-------FITSEELAANKISANDQRVLPVFKNYHPGKPSN 173
Query: 79 VLYIKNLAKDVIPDDFFFIF 98
LYIKNLAK V D +I+
Sbjct: 174 RLYIKNLAKQVEMKDLHYIY 193
>gi|212529316|ref|XP_002144815.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074213|gb|EEA28300.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 253
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAFV 128
++GNP + Y+ NL + V DD +F G+I L + + + +GQAF+
Sbjct: 8 SSGNPPNPTYVHNLEERVKIDDLKEALTEIFSEYGTI------LEIVAKKNLKAKGQAFI 61
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F +VE A RA+ VNG+ GKPM + F + + A
Sbjct: 62 VFDNVESAQRAIEEVNGFDLLGKPMSLDFAKTRSDA 97
>gi|209878161|ref|XP_002140522.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556128|gb|EEA06173.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 103
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 67 MFKNYAAGNPAS----VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG-- 120
M K +GN + LY KNL V D I LF + G +K++ +G
Sbjct: 1 MLKQLVSGNEDTFVNKTLYCKNLNDKVNKKDLRVILYELF-----IQYGTILKIIVKGGC 55
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
RGQAFV F ++ A ALN VNG V GKP++I++ +
Sbjct: 56 NNRGQAFVLFDNLNSAIEALNNVNGRVILGKPIVIEYAK 94
>gi|308457660|ref|XP_003091200.1| CRE-RNP-3 protein [Caenorhabditis remanei]
gi|308257954|gb|EFP01907.1| CRE-RNP-3 protein [Caenorhabditis remanei]
Length = 223
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPS 132
NP +Y+ NL + + D+ +F + G ++LM ++ +MRGQA V F
Sbjct: 5 NPNHTVYVNNLNEKIKRDELKRSLHMIF-----TQFGEIIQLMSFRKEKMRGQAHVVFKE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F GKPM IQ+ R
Sbjct: 60 ISSASNALRALQGFPFYGKPMRIQYAR 86
>gi|242207485|ref|XP_002469596.1| predicted protein [Postia placenta Mad-698-R]
gi|220731400|gb|EED85245.1| predicted protein [Postia placenta Mad-698-R]
Length = 231
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 77 ASVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
+ LYI+NL + + IP + SL G A L V RMRGQAFV+F S ++
Sbjct: 5 SETLYIQNLNEKIKIP----VLKASLRGLFKAYGEVLDVVAHSNLRMRGQAFVSFESADV 60
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
A +AL V G+ KPM I F R + A
Sbjct: 61 AKKALKEVKGFPLYSKPMQISFARTRSDA 89
>gi|146183888|ref|XP_001027266.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|146143436|gb|EAS07024.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 247
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P + +YI NL + + DD F S +GSI L +K + RMRGQAFV F
Sbjct: 30 PNNTIYINNLNERISIDDLKQELFKLFSEYGSI------LEIKAKKNIRMRGQAFVVFEQ 83
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A +A+ +N F GK + + F + + A
Sbjct: 84 IACAQKAIEALNRKNFYGKALHLNFAKTKSDA 115
>gi|331231467|ref|XP_003328397.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307387|gb|EFP83978.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 315
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 112 LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
L V + RMRGQAFV FP E+A +A+ V G+ GKP+ I F R+PA
Sbjct: 110 LDVVAHRSVRMRGQAFVAFPDREMAAKAVKEVKGFPLYGKPIEIAFARSPA 160
>gi|452823467|gb|EME30477.1| U2 small nuclear ribonucleoprotein B'' [Galdieria sulphuraria]
Length = 250
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI+NL + V + + F S FG I + V ++ RMRGQAF+ F
Sbjct: 38 PNQTIYIRNLDEKVKKQELRQSLYEAF-SQFGRI------VDVVALKTTRMRGQAFIAFE 90
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G++F KPM+IQ+ +
Sbjct: 91 DIASATNALRGLQGFLFYNKPMVIQYAK 118
>gi|302696767|ref|XP_003038062.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
gi|300111759|gb|EFJ03160.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
Length = 261
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 67 MFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRG 124
M + G P + LYIKNL V D+ +LF + G + ++ + RMRG
Sbjct: 1 MAATTSTGQPNTTLYIKNLNDKVQKDELRHQLYALFTTY-----GRIIDMVVSKAPRMRG 55
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
QA++ F + A AL G VF KPM I + ++ + A
Sbjct: 56 QAWLVFADLASATTALRACQGMVFYDKPMHIDYAKSKSFA 95
>gi|281202145|gb|EFA76350.1| U2 small nuclear ribonucleoprotein B [Polysphondylium pallidum
PN500]
Length = 246
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+Y+ NL +K + + + +F S +GSI L + + +MRGQAF+ F +
Sbjct: 30 TIYVNNLNEKPSKKKLTEQLYSLF-SPYGSI------LEIVAAKRQKMRGQAFIVFKDIT 82
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
A AL +NG+ F G+PM IQ+ ++ + A
Sbjct: 83 SASNALREMNGFEFLGRPMSIQYAKSKSDA 112
>gi|358371386|dbj|GAA87994.1| RNP domain protein, partial [Aspergillus kawachii IFO 4308]
Length = 335
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G+ ++V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 225 SGGDKSAVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 279
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
S E A A+ GY + G+P+ I F
Sbjct: 280 STETAETAIAKFTGYQYGGRPLGITF 305
>gi|403411353|emb|CCL98053.1| predicted protein [Fibroporia radiculosa]
Length = 271
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 77 ASVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
+ LYI+NL + + IP + SL G + L V RMRGQAFV+F S E
Sbjct: 45 SETLYIQNLNEKIRIP----VLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFDSAEA 100
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
A +AL V G+ KPM I F R + A
Sbjct: 101 AKKALKEVRGFPLYSKPMQISFARTRSDA 129
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + S FG+I +AK +M+EGR RG FV F S E A +A
Sbjct: 297 LYVKNL-DDNINDERLWKEFSPFGTITSAKV-----MMEEGRSRGFGFVCFSSPEEATKA 350
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 351 VTEMNGRIIGSKPLYV 366
>gi|409084026|gb|EKM84383.1| hypothetical protein AGABI1DRAFT_110905 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 292
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG--RMRGQAFVTFPSV 133
P LYI+NL + V P LF S G + ++ G RMRGQAFV+F SV
Sbjct: 65 PCETLYIQNLNEKVKPQVLQATLRGLFKSY-----GDVLDVVAHGNMRMRGQAFVSFDSV 119
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A +A+ V + KPM I F + + A
Sbjct: 120 DSARKAMKDVQRFPLYSKPMQITFAKTRSDA 150
>gi|353234729|emb|CCA66751.1| related to small nuclear ribonucleoprotein snRNP U1A
[Piriformospora indica DSM 11827]
Length = 274
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
N + LYI+NL V +LF L V + RMRGQAFV+F V+
Sbjct: 44 NASETLYIQNLNDQVKLSYMKTTLTNLFRHYGKV---LDVVAHRNVRMRGQAFVSFAHVD 100
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
LA +AL V + GKPM + + + + A
Sbjct: 101 LARKALKEVQKFPLYGKPMQVSYAKTRSEA 130
>gi|299742555|ref|XP_001832567.2| hypothetical protein CC1G_03581 [Coprinopsis cinerea okayama7#130]
gi|298405237|gb|EAU89316.2| hypothetical protein CC1G_03581 [Coprinopsis cinerea okayama7#130]
Length = 266
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK-----LMQEGRMRGQAFVTFP 131
A+ L + NL +V P D IFG + G V+ + GR GQA VTF
Sbjct: 60 ATKLKVSNLHYEVTPKDLNAIFGQI---------GTLVREPVLWYDESGRSTGQAIVTFE 110
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ A RA+N NG + KG+PM I +
Sbjct: 111 TAAEATRAMNQFNGILAKGQPMSITY 136
>gi|330842469|ref|XP_003293200.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
gi|325076492|gb|EGC30273.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
Length = 233
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +Y+ NL +K + + + +F S +G I L ++ + +MRGQAF+ F
Sbjct: 12 PNQTIYVNNLYEKISKKKLREHLYSLF-SKYGQI------LEIEASKSLKMRGQAFIVFK 64
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL +NG+ F +PM IQ+ +N + A
Sbjct: 65 DITSASNALREMNGFNFLDRPMKIQYSKNKSDA 97
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV FPS E A +A
Sbjct: 197 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFPSREEATKA 250
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 251 VTEMNGRIVGSKPLYV 266
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V + +F S FG L+VK+M++ G+ RG FV++ E A+
Sbjct: 94 VYIKNFGEEVDDGNLKELF-SQFGKT------LSVKVMRDSSGKSRGFGFVSYEKHEDAN 146
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 147 KAVDEMNGKEMSGKAIFV 164
>gi|389742376|gb|EIM83563.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 274
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
+ LYI+NL + + + SL G + L V RMRGQAFV+F S E+A
Sbjct: 48 SETLYIQNLNEKI---RIEVLKNSLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFESPEIA 104
Query: 137 HRALNLVNGYVFKGKPMIIQFGRN 160
+AL V G+ KPM I F R
Sbjct: 105 AKALKEVKGFPLYSKPMQISFART 128
>gi|189053747|dbj|BAG35999.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ R
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYART 89
>gi|310793820|gb|EFQ29281.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 203
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P LY+ NL K + + + +F S +G + L + M+ +MRGQA +TF
Sbjct: 25 PNQTLYVTNLPSNKIQKQDLRTELYLLF-STYGPV------LDIVAMKTMKMRGQAHITF 77
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V+ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 78 RDVQTATQAMRSLEGFEFLGRPLTIQYAKS 107
>gi|392589278|gb|EIW78609.1| hypothetical protein CONPUDRAFT_108567 [Coniophora puteana
RWD-64-598 SS2]
Length = 239
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 44 KPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFG 103
KP+A P + LS A P+ L + NL ++ P + S+FG
Sbjct: 8 KPYARPRRSDGVWSHDRAALSSGPAARTAGSEPSMKLIVSNLHYEITPKNLM----SIFG 63
Query: 104 SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
I C ++ + GR G A VT+ ++ A RA N G + KG+PM I
Sbjct: 64 QIGTLVCEPQIRYDRSGRSSGVAIVTYETIGEATRAKNQFQGLLAKGQPMEI 115
>gi|213410425|ref|XP_002175982.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
gi|212004029|gb|EEB09689.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
Length = 249
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
+ LYI+NL + + + I LFG L V + RMRGQAFV F A
Sbjct: 23 SETLYIRNLEERIKLEMLKRILEHLFGKYGKI---LHVYARKTLRMRGQAFVVFEDGRCA 79
Query: 137 HRALNLVNGYVFKGKPMIIQF 157
+AL + G+ GKPM+IQF
Sbjct: 80 AQALQDLQGFPLYGKPMLIQF 100
>gi|348683636|gb|EGZ23451.1| hypothetical protein PHYSODRAFT_484798 [Phytophthora sojae]
Length = 236
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY+ NL + D + +L+ S+ L + + + R+RGQA+VTF +
Sbjct: 21 PNHTLYLNNLNDKIKADR---MKATLYASLSQHGKILEIVMGRARRLRGQAWVTFDDIPS 77
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
A AL VNG V KP++I F + A
Sbjct: 78 ASNALRAVNGSVLFDKPVVIHFAKEKA 104
>gi|398396806|ref|XP_003851861.1| hypothetical protein MYCGRDRAFT_104845 [Zymoseptoria tritici
IPO323]
gi|339471741|gb|EGP86837.1| hypothetical protein MYCGRDRAFT_104845 [Zymoseptoria tritici
IPO323]
Length = 498
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G P +++++KNL DD +F ++ G++D A+ ++ GR RG V F
Sbjct: 395 SGGQPNAIIHVKNLPWSTSNDDLVELFQTI-GTVDRAE----IQYEANGRSRGAGVVQFG 449
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
S A A+ GY + G+P+ + + R P A
Sbjct: 450 SQGDAATAIEKFQGYSYGGRPLGLDYARYPDAG 482
>gi|444319608|ref|XP_004180461.1| hypothetical protein TBLA_0D04460 [Tetrapisispora blattae CBS 6284]
gi|387513503|emb|CCH60942.1| hypothetical protein TBLA_0D04460 [Tetrapisispora blattae CBS 6284]
Length = 133
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 79 VLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
LYI+N+ + ++P ++ S FG I K G +RGQAFVTF +++
Sbjct: 45 TLYIRNIPEKLLPSQVRINLYLLLSTFGEIIYIKVG-----KPRSSLRGQAFVTFRTIDE 99
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
AH A ++ +F G+ + ++F R P+
Sbjct: 100 AHVAKTALDQELFFGQSLHLEFSRQPS 126
>gi|224146679|ref|XP_002326095.1| predicted protein [Populus trichocarpa]
gi|222862970|gb|EEF00477.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKNL + V ++ + S +G I L V ++ R+RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRI------LDVVALKTARLRGQAWVVFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A A+ + G+ F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQGFPFYDKPMRIQYAKT 89
>gi|409048571|gb|EKM58049.1| hypothetical protein PHACADRAFT_206888 [Phanerochaete carnosa
HHB-10118-sp]
Length = 234
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 64 SLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR 123
S P A +P + L + NL +V P D +FG + G++ ++ + GR
Sbjct: 41 SAPTASTAADASPNTKLLVSNLHYEVTPKDLTQVFG-IIGTLVREPL---IRYDRSGRST 96
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
G A +++ + A +AL NG + KG+PM I+F P
Sbjct: 97 GIAIISYETAAEAKQALAQYNGKLCKGQPMSIEFDSGP 134
>gi|302673457|ref|XP_003026415.1| hypothetical protein SCHCODRAFT_35516 [Schizophyllum commune H4-8]
gi|300100097|gb|EFI91512.1| hypothetical protein SCHCODRAFT_35516, partial [Schizophyllum
commune H4-8]
Length = 230
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
LYI+NL + + D +LF + L V + RMRGQAFV+F V A
Sbjct: 9 CETLYIQNLNEKIKVDIMKQTLRTLFKTYGEV---LDVVAHRNLRMRGQAFVSFADVNSA 65
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAA 164
RA V G+ KPM I F R + A
Sbjct: 66 RRAAREVRGFPLYTKPMQISFARTRSDA 93
>gi|409052167|gb|EKM61643.1| hypothetical protein PHACADRAFT_248371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 267
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 79 VLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
LYI+NL + + +P + SL G + L V RMRGQAFV+F + E+A
Sbjct: 43 TLYIQNLNEKIKVP----VLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFENAEVAK 98
Query: 138 RALNLVNGYVFKGKPMIIQFGRN 160
+AL V G+ KPM I + R
Sbjct: 99 KALKEVRGFPLYSKPMQISYART 121
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+A +V D+F +F + FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 247 IYVKNIANEVTDDEFRDLF-TAFGDVTSS----SLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 302 VDDLNGKDFRGQDLYV 317
>gi|380494672|emb|CCF32976.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 204
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 75 NPASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
+P LY+ NL K + + + +F S +G + L + ++ +MRGQA +T
Sbjct: 24 SPNQTLYVTNLPSNKIQKQDLRTELYLLF-STYGPV------LDIVALKTMKMRGQAHIT 76
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
F V+ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 77 FRDVQTATQAMRSLEGFEFLGRPLTIQYAKS 107
>gi|301624539|ref|XP_002941556.1| PREDICTED: RNA-binding protein 39 [Xenopus (Silurana) tropicalis]
Length = 420
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GNP + LY+ +L ++ D IF FG I+ ++L++E GR
Sbjct: 235 MSNNLQRGNPGPMRLYVGSLHFNITEDMLRGIF-EPFGKIE------NIQLLKEPDTGRS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGFGFITFTDAECARRALEQLNGFELAGRPMKV 320
>gi|449541608|gb|EMD32591.1| hypothetical protein CERSUDRAFT_118631 [Ceriporiopsis subvermispora
B]
Length = 272
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
+ LYI+NL + + SLF + L V RMRGQAFV+F S E A
Sbjct: 46 SETLYIQNLNEKIKIPVLKQSLRSLFKTYGEV---LDVVAHSNLRMRGQAFVSFDSAESA 102
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+AL V G+ KPM I F R+ + A
Sbjct: 103 QKALKEVRGFPLYSKPMQISFARSRSDA 130
>gi|296005347|ref|XP_002809001.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
gi|225631938|emb|CAX64282.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
Length = 449
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LYIKNL V D+ LF + K + +M+ +GQA+V + E
Sbjct: 173 PNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLI---VMKSFWRKGQAWVVYDDKEC 229
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
A +ALN + GYV GK M I F N +
Sbjct: 230 ATKALNALQGYVLFGKIMQINFSHNKS 256
>gi|429858035|gb|ELA32870.1| RNA binding domain-containing protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 196
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 75 NPASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
+P LY+ NL K+ + + + +F S +G + L + M+ +MRGQA +T
Sbjct: 24 SPNQTLYVTNLPSAKIQKNDLRTELYLLF-STYGPV------LDIVAMKTMKMRGQAHIT 76
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
F ++ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 77 FRDIQAATQAMRSLEGFEFLGRPLSIQYAKS 107
>gi|212529314|ref|XP_002144814.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074212|gb|EEA28299.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 254
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 72 AAGNPAS-VLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAF 127
++GNP + +Y+ NL + V DD +F G+I L + + + +GQAF
Sbjct: 8 SSGNPPNPTVYVHNLEERVKIDDLKEALTEIFSEYGTI------LEIVAKKNLKAKGQAF 61
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ F +VE A RA+ VNG+ GKPM + F + + A
Sbjct: 62 IVFDNVESAQRAIEEVNGFDLLGKPMSLDFAKTRSDA 98
>gi|449549875|gb|EMD40840.1| hypothetical protein CERSUDRAFT_103222 [Ceriporiopsis subvermispora
B]
Length = 258
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
++ P LYIKNL V ++ + + +G I + + M+ +MRGQAF+
Sbjct: 2 SSTQPNETLYIKNLNDKVNKEELRTQLYALFTTYGKI------INIVAMKTEKMRGQAFL 55
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F + A AL G VF KPM I++ R + A
Sbjct: 56 VFSDLASATAALRACEGIVFYDKPMHIEYARTRSYA 91
>gi|157831077|pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 59
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 60 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+A DV DDF +F FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAPDVTEDDFRELF-EKFGDVTSS----SLARDQEGKSRGFGFVNFTTHESASKA 296
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F G+ + +
Sbjct: 297 VDDLNGKDFHGQDLYV 312
>gi|213404018|ref|XP_002172781.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212000828|gb|EEB06488.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 485
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
+ YA G P+ +++I NL + D +F S FG I+ A + GR RG V
Sbjct: 268 RAYANGPPSPIIHIGNLPWLTVDQDLLDLFNS-FGKIERA----AIAYEPSGRSRGFGVV 322
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
F + A A+ +NGYV+ +P+ I + R
Sbjct: 323 QFQTTPEAASAIEKLNGYVYGNRPLQISYAR 353
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+A DV +DF +F FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAPDVTDEDFRQLF-EKFGDVTSS----SLARDQEGKTRGFGFVNFTTHEAAFKA 296
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG F+G+ + +
Sbjct: 297 VEELNGKDFRGQDLYV 312
>gi|353239405|emb|CCA71318.1| related to small nuclear ribonucleoprotein U2B` (U2 small nuclear
RNA-associated protein B`) [Piriformospora indica DSM
11827]
Length = 146
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
NP LYIKNL + D+ +LF G I L V ++ +MRGQAFV F
Sbjct: 3 NPNPTLYIKNLNDRINKDELRAQLYALFLPHGPI------LDVVALKTAKMRGQAFVVFQ 56
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL G +F KPM I++ ++ + A
Sbjct: 57 DMIAATAALRAWQGEMFYDKPMHIEYAKSKSWA 89
>gi|350630184|gb|EHA18557.1| hypothetical protein ASPNIDRAFT_52545 [Aspergillus niger ATCC 1015]
Length = 486
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G+ ++V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 377 SGGDKSAVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 431
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
S + A A+ GY + G+P+ I F
Sbjct: 432 SADTAETAIAKFTGYQYGGRPLGITF 457
>gi|317029023|ref|XP_001390966.2| RNP domain protein [Aspergillus niger CBS 513.88]
Length = 480
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G+ ++V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 371 SGGDKSAVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 425
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
S + A A+ GY + G+P+ I F
Sbjct: 426 SADTAETAIAKFTGYQYGGRPLGITF 451
>gi|259016306|sp|O59670.2|PM14_SCHPO RecName: Full=Pre-mRNA branch site p14-like protein
Length = 115
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S+L+IKNL+ + ++ + +FG +G + + G TV+ RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGR-YGPVRQIRLGNTVQ------TRGTAFVVYENVQDAR 64
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>gi|317029025|ref|XP_003188692.1| RNP domain protein [Aspergillus niger CBS 513.88]
Length = 428
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G+ ++V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 319 SGGDKSAVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 373
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
S + A A+ GY + G+P+ I F
Sbjct: 374 SADTAETAIAKFTGYQYGGRPLGITF 399
>gi|295442846|ref|NP_595835.2| Pre-mRNA branch site p14-like protein [Schizosaccharomyces pombe
972h-]
gi|254745590|emb|CAA18384.2| U2 snRNP-associated protein SF3B14 ortholog (predicted)
[Schizosaccharomyces pombe]
Length = 114
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S+L+IKNL+ + ++ + +FG +G + + G TV+ RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGR-YGPVRQIRLGNTVQ------TRGTAFVVYENVQDAR 64
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>gi|383847977|ref|XP_003699629.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Megachile
rotundata]
Length = 231
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 EIASATNALRSMQGFPFYDKPMRIQYAKT 86
>gi|346978290|gb|EGY21742.1| U2 small nuclear ribonucleoprotein B [Verticillium dahliae VdLs.17]
Length = 194
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL--AKDVIPD---DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P LY+ NL AK PD + + +F S +G + L + M+ +MRGQA +T+
Sbjct: 25 PNQTLYVTNLPSAKIQKPDLRTELYLLF-STYGPV------LDIVAMKTMKMRGQAHITY 77
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ + G+ F G+P+ IQ+ ++
Sbjct: 78 RDIQTATQAMRSLEGFEFLGRPLRIQYAKS 107
>gi|380024353|ref|XP_003695965.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Apis
florea]
Length = 231
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 EIASATNALRSMQGFPFYDKPMRIQYAKT 86
>gi|293332553|ref|NP_001169063.1| uncharacterized protein LOC100382904 [Zea mays]
gi|223974745|gb|ACN31560.1| unknown [Zea mays]
Length = 426
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G+ ++V+Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 312 FTDYATSGGDKSAVIYVRNLPWSTCNEDLVDLFTTI-GKVERAE----IQYEGNGRSRGT 366
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V F S E A A++ GY + G+P+ I F R
Sbjct: 367 GVVEFDSPETAETAISKFTGYQYGGRPLGITFVR 400
>gi|332855731|ref|XP_003316404.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Pan
troglodytes]
Length = 227
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|242790897|ref|XP_002481649.1| RNP domain protein [Talaromyces stipitatus ATCC 10500]
gi|218718237|gb|EED17657.1| RNP domain protein [Talaromyces stipitatus ATCC 10500]
Length = 478
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G+ ++V+Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 364 FTDYATSGGDKSAVIYVRNLPWSTCNEDLVDLFTTI-GKVERAE----IQYEGNGRSRGT 418
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V F S E A A++ GY + G+P+ I F R
Sbjct: 419 GVVEFDSPETAETAISKFTGYQYGGRPLGITFVR 452
>gi|395859649|ref|XP_003802146.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Otolemur
garnettii]
Length = 231
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 74 GNPASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
P +YI NL KD + + IF S FG I L + + + +MRGQAFV
Sbjct: 6 ARPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVI 58
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
F V A AL + G+ F KPM IQ+ +
Sbjct: 59 FKEVSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 283 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 336
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 337 VTEMNGRIVGSKPLYV 352
>gi|301115920|ref|XP_002905689.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
gi|262110478|gb|EEY68530.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
Length = 233
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY+ NL + D + +L+ ++ L + + + R+RGQA+VTF V
Sbjct: 18 PNHTLYLNNLNDKIKADR---MKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDVPS 74
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
A AL VNG KP++I F + A
Sbjct: 75 ASSALRTVNGTTLFDKPVVIHFAKEKA 101
>gi|340726396|ref|XP_003401545.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Bombus
terrestris]
gi|350423999|ref|XP_003493658.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Bombus
impatiens]
Length = 233
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 7 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 59
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 60 EIASATNALRSMQGFPFYDKPMRIQYAKT 88
>gi|432109445|gb|ELK33675.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 282
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|344250312|gb|EGW06416.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 291
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|426388779|ref|XP_004060810.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Gorilla
gorilla gorilla]
Length = 229
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|56605690|ref|NP_001008304.1| U1 small nuclear ribonucleoprotein A [Rattus norvegicus]
gi|55562825|gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
gi|149056537|gb|EDM07968.1| small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
Length = 281
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|431920192|gb|ELK18231.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 282
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|354486243|ref|XP_003505291.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cricetulus griseus]
Length = 284
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|17541324|ref|NP_500504.1| Protein RNP-2 [Caenorhabditis elegans]
gi|351064354|emb|CCD72715.1| Protein RNP-2 [Caenorhabditis elegans]
Length = 206
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P S LYI NL + + D+ FG I + C T+K MRGQA V F
Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLK------MRGQAHVIFKE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A A +NG+ F KPM IQF R
Sbjct: 60 LPAASAAREALNGFPFYEKPMRIQFAR 86
>gi|395859647|ref|XP_003802145.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Otolemur
garnettii]
Length = 282
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 74 GNPASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
P +YI NL KD + + IF S FG I L + + + +MRGQAFV
Sbjct: 6 ARPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVI 58
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
F V A AL + G+ F KPM IQ+ +
Sbjct: 59 FKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|440910289|gb|ELR60098.1| U1 small nuclear ribonucleoprotein A, partial [Bos grunniens mutus]
Length = 287
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 13 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 65
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 66 EVSSATNALRSMQGFPFYDKPMRIQYAKT 94
>gi|114051315|ref|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos taurus]
gi|187607541|ref|NP_001119825.1| U1 small nuclear ribonucleoprotein A [Ovis aries]
gi|122142801|sp|Q2KIR1.1|SNRPA_BOVIN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|86437996|gb|AAI12545.1| Small nuclear ribonucleoprotein polypeptide A [Bos taurus]
gi|184191137|gb|ACC76781.1| SNPRA [Ovis aries]
gi|296477802|tpg|DAA19917.1| TPA: U1 small nuclear ribonucleoprotein A [Bos taurus]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|351715411|gb|EHB18330.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|126723082|ref|NP_001075629.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|344298221|ref|XP_003420792.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Loxodonta
africana]
Length = 200
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 75 NPASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 7 RPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIF 59
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 60 KEVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|73948310|ref|XP_533663.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Canis lupus
familiaris]
gi|149722301|ref|XP_001499386.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Equus
caballus]
gi|301776649|ref|XP_002923740.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Ailuropoda
melanoleuca]
gi|403305332|ref|XP_003943221.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Saimiri
boliviensis boliviensis]
gi|281340732|gb|EFB16316.1| hypothetical protein PANDA_012942 [Ailuropoda melanoleuca]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|270047496|ref|NP_001161808.1| U1 small nuclear ribonucleoprotein A [Apis mellifera]
Length = 231
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNVKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 EIASATNALRSMQGFPFYDKPMRIQYAKT 86
>gi|410983004|ref|XP_003997834.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Felis catus]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|348552486|ref|XP_003462058.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cavia
porcellus]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|444732044|gb|ELW72368.1| U1 small nuclear ribonucleoprotein A [Tupaia chinensis]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|426388777|ref|XP_004060809.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Gorilla
gorilla gorilla]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|390479015|ref|XP_003735632.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Callithrix jacchus]
Length = 275
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|355721034|gb|AES07131.1| small nuclear ribonucleoprotein polypeptide A [Mustela putorius
furo]
Length = 281
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|116175267|ref|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus scrofa]
gi|122131847|sp|Q06AA4.1|SNRPA_PIG RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|115371743|gb|ABI96196.1| SNRPA [Sus scrofa]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|383873129|ref|NP_001244434.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|114677331|ref|XP_512674.2| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Pan
troglodytes]
gi|297704832|ref|XP_002829283.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pongo abelii]
gi|397482634|ref|XP_003812525.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pan paniscus]
gi|402905610|ref|XP_003915609.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Papio anubis]
gi|355703564|gb|EHH30055.1| hypothetical protein EGK_10636 [Macaca mulatta]
gi|355755853|gb|EHH59600.1| hypothetical protein EGM_09749 [Macaca fascicularis]
gi|380784673|gb|AFE64212.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|383414025|gb|AFH30226.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|384943590|gb|AFI35400.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|410207170|gb|JAA00804.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
gi|410287236|gb|JAA22218.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|4759156|ref|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapiens]
gi|134092|sp|P09012.3|SNRPA_HUMAN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|315583598|pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
gi|315583607|pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
gi|37541|emb|CAA29653.1| unnamed protein product [Homo sapiens]
gi|340052|gb|AAA61245.1| U1 snRNP-specific protein A [Homo sapiens]
gi|12653273|gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|14249835|gb|AAH08290.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|119577399|gb|EAW56995.1| small nuclear ribonucleoprotein polypeptide A, isoform CRA_a [Homo
sapiens]
gi|208967436|dbj|BAG73732.1| small nuclear ribonucleoprotein polypeptide A [synthetic construct]
Length = 282
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>gi|212534696|ref|XP_002147504.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
gi|210069903|gb|EEA23993.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
Length = 434
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G+ ++V+Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 320 FTDYATSGGDKSAVIYVRNLPWSTCNEDLVDLFTTI-GKVERAE----IQYEGNGRSRGT 374
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V F S E A A++ GY + G+P+ I F R
Sbjct: 375 GVVEFDSPETAETAISKFTGYQYGGRPLGITFVR 408
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 70 NYAAGN-PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
N AAGN P + LY+ +L D+ + F + C + M R G A+V
Sbjct: 2 NTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVC----RDMITRRSLGYAYV 57
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 58 NFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 95
>gi|354545262|emb|CCE41989.1| hypothetical protein CPAR2_805380 [Candida parapsilosis]
Length = 454
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +Y++NL DD F +F ++ G + A+ ++ ++GR G A V F SV+
Sbjct: 371 PNDTIYVENLPFSTQNDDLFDLFETI-GKVSNAE----IQYQEDGRASGNAVVQFESVDS 425
Query: 136 AHRALNLVNGYVFKGKPMIIQF 157
A +LN +NGY + G+ + I +
Sbjct: 426 ATTSLNELNGYEYGGRKLKISY 447
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 70 NYAAGN-PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
N AAGN P + LY+ +L D+ + F + C + M R G A+V
Sbjct: 2 NTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVC----RDMITRRSLGYAYV 57
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 58 NFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 95
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|258568094|ref|XP_002584791.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906237|gb|EEP80638.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 420
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 53 EMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGL 112
E +PP + G ++++Y++NL +D +F S G ++ A+
Sbjct: 297 EATSIPPNPFTDFATY----GGERSALIYVRNLPWSTCNEDLVELF-STIGKVERAE--- 348
Query: 113 TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
++ Q GR RG V F ++E A A++ +GY + G+P+ + F
Sbjct: 349 -IQYEQNGRSRGTGVVQFDTIENAETAISKFSGYQYGGRPLGLTF 392
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL+KD+ D F +F S FG I ++ +MQ+ G+ RG FV F S E A
Sbjct: 201 LYVKNLSKDMTQDAFHNMF-SAFGEI------ISAVIMQDHNGKSRGFGFVDFESPEDAK 253
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAK 165
+A++ +NGY + + + + GR A A+
Sbjct: 254 KAVDALNGYQLESRTLFV--GRAQAKAE 279
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 67 MFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQA 126
+F + AS LY+KNLA + D +F S G I +AK V G RG
Sbjct: 291 IFNTHMEKFKASNLYVKNLALCIDNDKLQELF-SCSGKIVSAK----VMRYDNGASRGFG 345
Query: 127 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
FV F S E A +ALN +NG VF+GK + + +
Sbjct: 346 FVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQ 378
>gi|392570636|gb|EIW63808.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 281
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 79 VLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
LYI+NL + + IP + SL G + L V RMRGQAFV+F ++A
Sbjct: 57 TLYIQNLNEKIKIP----VLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFADADVAK 112
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAA 164
+AL V G+ KPM I F R + A
Sbjct: 113 KALKEVRGFPLYTKPMQISFARTRSDA 139
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 297 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 350
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 351 VTEMNGRIVGSKPLYV 366
>gi|90077244|dbj|BAE88302.1| unnamed protein product [Macaca fascicularis]
Length = 197
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAK 88
>gi|239611716|gb|EEQ88703.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 190
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIAYGKG 96
>gi|261201324|ref|XP_002627062.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239592121|gb|EEQ74702.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 190
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIAYGKG 96
>gi|440906315|gb|ELR56591.1| Putative RNA-binding protein 23 [Bos grunniens mutus]
Length = 463
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
M N GN V LY+ +L ++ D I FG ID + +K + GR +G
Sbjct: 266 MANNLQKGNGGPVRLYVGSLHCNITEDMLRGIL-EPFGKIDNI---VLMKDSETGRSKGY 321
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
F+TF E A RAL +NG+ G+PM I
Sbjct: 322 GFITFSDSECARRALEQLNGFELAGRPMRI 351
>gi|317037413|ref|XP_001399113.2| RNA binding domain protein [Aspergillus niger CBS 513.88]
Length = 196
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
A G P LY NL + D ++ S +G++ L V M+ +MRGQA +
Sbjct: 19 ATGLPNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTV------LDVVAMKTQKMRGQAHI 72
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
F V+ + +A+ + G+ F GK M I + + P+
Sbjct: 73 VFKDVQASTQAMRALQGFEFFGKQMKIVYAKGPS 106
>gi|299742799|ref|XP_001832784.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298405354|gb|EAU89029.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 257
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
LYI+NL + + P+ LF + L V RMRGQAFV+F S ++A +
Sbjct: 33 TLYIQNLNEKIKPEVLKTTLRGLFKTYGPV---LDVVAHSNLRMRGQAFVSFESADIAEK 89
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAA 164
A+ V + KPM I F + + A
Sbjct: 90 AMREVQRFPLYSKPMQISFAKTRSDA 115
>gi|295672938|ref|XP_002797015.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282387|gb|EEH37953.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 197
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYGK 95
>gi|407004871|gb|EKE21139.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 109
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYI NL ++ DD FG GS+ +A TV Q+G+ +G AFV + E A +A
Sbjct: 5 LYIGNLLYEITEDDLKEYFGQA-GSVASA----TVIRFQDGKSKGFAFVEMETEEAAQKA 59
Query: 140 LNLVNGYVFKGKPMIIQFGRNP 161
++ +NG +KG+ +++ R P
Sbjct: 60 IDTLNGQDYKGRKIVVAEARPP 81
>gi|345570654|gb|EGX53475.1| hypothetical protein AOL_s00006g341 [Arthrobotrys oligospora ATCC
24927]
Length = 255
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Query: 76 PASVLYIKNLAKDV-IP------DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
P+S +Y +NL + V IP + F +G++ I AK L R RGQAFV
Sbjct: 4 PSSTVYCRNLEESVKIPVLTATLETLFSQYGTILEII--AKKNL--------RARGQAFV 53
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F S E A RA+ V G+ KPM++Q+ + + A
Sbjct: 54 VFDSPEAAERAIKEVQGFNLFEKPMVLQYAKTKSDA 89
>gi|384486776|gb|EIE78956.1| hypothetical protein RO3G_03661 [Rhizopus delemar RA 99-880]
Length = 140
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL +D+ F +F S FG I +A+ +K Q G +G FV+F +E A+ A
Sbjct: 10 LYIKNLDRDITSKILFELFRS-FGEIISARV---MKDTQTGLSKGYGFVSFRQMEDAYEA 65
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAK 165
L +NG + K + + F A+
Sbjct: 66 LMEMNGSRLRTKHISVSFHEQKKTAQ 91
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL KD+ + F S FG+I + K + L + G +G
Sbjct: 99 PSLRRSGVGN----IFIKNLEKDIDNKAIYDTF-SAFGNILSCK----IALDENGNSKGY 149
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
AFV F + E A+RA+ VNG + GK + +
Sbjct: 150 AFVHFETQEAANRAIEKVNGMLLSGKKVFV 179
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL DVI D + FG+I +AK V ++G RG FV F S E A +A
Sbjct: 305 LYVKNL-DDVIDDAKLRQEFANFGTITSAK----VMSDEKGISRGFGFVCFSSPEEATKA 359
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 360 VTEMNGRIIISKPLYV 375
>gi|442760027|gb|JAA72172.1| Putative spliceosomal protein snrnp-u1a/u2b [Ixodes ricinus]
Length = 239
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL + G+ F KPM IQ+ + + A
Sbjct: 58 DLNSATNALRSMQGFPFYDKPMRIQYSKTDSDA 90
>gi|225680763|gb|EEH19047.1| U1 small nuclear ribonucleoprotein A [Paracoccidioides brasiliensis
Pb03]
Length = 197
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I +G+
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYGK 95
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK V + G+ RG FV + S E A RA
Sbjct: 324 LYVKNLHDD-IDDETLRTEFSQFGTITSAK----VMVDSAGKSRGFGFVCYASPEEATRA 378
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KGKP+ + +
Sbjct: 379 VTEMNGRMIKGKPIYVALAQ 398
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P F+ GN ++IKNL + V F S FG+I + K +K G +G
Sbjct: 121 PAFRKSGVGN----IFIKNLDRSVDNKALHDTF-SAFGNILSCKVAQDLK----GESKGY 171
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F E A A+ VNG + +GK + +
Sbjct: 172 GFVHFEKDESARLAIEKVNGMLLEGKKVYV 201
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV-- 133
S LY+ +L +DV F +F + SI + +T + + G A+V + SV
Sbjct: 38 SSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSL------GYAYVNYNSVLD 91
Query: 134 -ELAHRALNLVNGYVFKGKPMIIQFG-RNPA 162
A RAL+ +N G+PM I + R+PA
Sbjct: 92 PAAAERALDQLNYTPLVGRPMRIMWSHRDPA 122
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|395529330|ref|XP_003766769.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Sarcophilus
harrisii]
Length = 241
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ ++
Sbjct: 61 EISSATNALRSMQGFPFYDKPMRIQYAKS 89
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 70 NYAAGN-PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
N AAGN P + LY+ +L D+ + F + C + M R G A+V
Sbjct: 2 NTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVC----RDMITRRSLGYAYV 57
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 58 NFSQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRK 95
>gi|392574488|gb|EIW67624.1| hypothetical protein TREMEDRAFT_33230 [Tremella mesenterica DSM
1558]
Length = 250
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 75 NPASVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
N LY++NL + V +P G LF L V + RMRGQAFVTF V
Sbjct: 23 NACETLYLQNLNEKVRLPAVMKETLGVLFKPYRPI---LPVVAHRNVRMRGQAFVTFHDV 79
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
E A+RA V + GKP+ I+F ++
Sbjct: 80 ETANRARREVGEFPLYGKPIQIKFAKS 106
>gi|426195373|gb|EKV45303.1| hypothetical protein AGABI2DRAFT_194268 [Agaricus bisporus var.
bisporus H97]
Length = 243
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 44 KPFAT--PEELEMGKLPPEEILSLPMFKNYAAGN------PASVLYIKNLAKDVIPDDFF 95
+P A+ PE + P + +P AG P + + NL ++ P D
Sbjct: 13 RPTASRAPEGQWLHDKAPGSNIDIPRTSRPTAGGTTPSAAPTDKILVSNLHYEITPKDLN 72
Query: 96 FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG + I ++ + GR GQA V+F +V A RA NG + KG+PM +
Sbjct: 73 VIFGQIGTLIREP----LIRYDRSGRSSGQAIVSFETVAEAVRAKKQFNGILAKGQPMTV 128
Query: 156 QF 157
F
Sbjct: 129 DF 130
>gi|409077031|gb|EKM77399.1| hypothetical protein AGABI1DRAFT_115306 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 243
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + + NL ++ P D IFG + I ++ + GR GQA V+F +V
Sbjct: 53 PTDKILVSNLHYEITPKDLNVIFGQIGTLIREP----LIRYDRSGRSSGQAIVSFETVAE 108
Query: 136 AHRALNLVNGYVFKGKPMIIQF 157
A RA NG + KG+PM + F
Sbjct: 109 AVRAKKQFNGILAKGQPMTVDF 130
>gi|307195443|gb|EFN77329.1| U2 small nuclear ribonucleoprotein B'' [Harpegnathos saltator]
Length = 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 EIGSATNALRSMQGFPFYDKPMRIQYAKT 86
>gi|226372064|gb|ACO51657.1| U1 small nuclear ribonucleoprotein A [Rana catesbeiana]
Length = 279
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRNLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ ++
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYSKS 89
>gi|126329351|ref|XP_001371614.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Monodelphis
domestica]
Length = 340
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 67 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 119
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ ++
Sbjct: 120 EISSATNALRSMQGFPFYDKPMRIQYAKS 148
>gi|225719682|gb|ACO15687.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI NL + V DD + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM I F ++
Sbjct: 59 ITSATNALRSMQGFPFYDKPMRITFSKS 86
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVE 134
S +Y+KN+ DV ++ F S G+I +AK LM++ GR +G FV F S E
Sbjct: 294 GSNVYVKNIDDDVTDEELREHF-SQCGTITSAK------LMKDDKGRSKGFGFVCFSSSE 346
Query: 135 LAHRALNLVNGYVFKGKPMII 155
A +A+N +GY+F KP+ +
Sbjct: 347 EASKAVNTFHGYMFHRKPLYV 367
>gi|169599889|ref|XP_001793367.1| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
gi|160705342|gb|EAT89501.2| hypothetical protein SNOG_02770 [Phaeosphaeria nodorum SN15]
Length = 328
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 68 FKNYAAGN--PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F ++AAG P+S +Y++NL +D +F + G ++ A+ ++ GR RG
Sbjct: 215 FTDFAAGGGEPSSTIYVRNLPWSTSNEDLVELF-TTIGKVERAE----IQYEPNGRSRGT 269
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F E A A+ GY + G+P+ +QF
Sbjct: 270 GVVEFEKQEDAETAIAKFTGYQYGGRPLGLQF 301
>gi|341897441|gb|EGT53376.1| CBN-RNP-2 protein [Caenorhabditis brenneri]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P S LYI NL + + + +F FG I + C T+ RMRGQA V F
Sbjct: 6 PNSTLYINNLNEKIKIEELRKSLIAVFKQ-FGEIVSVMCFRTL------RMRGQAHVIFT 58
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ A A + G+ F KPM IQF R A
Sbjct: 59 DISAASAAKEALTGFPFYEKPMKIQFAREDA 89
>gi|363748204|ref|XP_003644320.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887952|gb|AET37503.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
Length = 113
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P S LY+ NL + + + + IF S FG + +K+ ++RGQAFVT
Sbjct: 29 PRSTLYVSNLNDQIKLEALKSNLYLIF-STFGEV--------LKISMSAKLRGQAFVTLK 79
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+V+ A+ A+ + F GKP+ IQF ++
Sbjct: 80 TVDEANLAMISLRDEPFFGKPLKIQFSKS 108
>gi|121700040|ref|XP_001268285.1| RNP domain protein [Aspergillus clavatus NRRL 1]
gi|119396427|gb|EAW06859.1| RNP domain protein [Aspergillus clavatus NRRL 1]
Length = 419
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G + V+Y++NL DD +F S G ++ A+ ++ GR RG
Sbjct: 304 FTDYATSGGEKSPVIYVRNLPWSTCNDDLVDLF-STIGKVERAE----IQYEPNGRSRGT 358
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + E A A+ GY + G+P+ I F
Sbjct: 359 GVVQFDNEETAETAIAKFTGYQYGGRPLGITF 390
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK +++EGR +G FV F S E A +A
Sbjct: 302 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEEGRSKGFGFVCFSSPEEATKA 355
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 356 VTEMNGRIVGSKPLYV 371
>gi|50546775|ref|XP_500857.1| YALI0B13860p [Yarrowia lipolytica]
gi|49646723|emb|CAG83108.1| YALI0B13860p [Yarrowia lipolytica CLIB122]
Length = 113
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
AG P ++L++KNL + D+ + +FG FG++ + G E RG AFV +
Sbjct: 6 AGQPNNILFVKNLPYESTSDELYELFGR-FGAVRQIRAG------SEKDTRGTAFVVYED 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQF 157
++ A A+ ++G+ +K + ++ F
Sbjct: 59 IDDATEAVKTLSGFNYKNRYLVALF 83
>gi|328850245|gb|EGF99412.1| hypothetical protein MELLADRAFT_40307 [Melampsora larici-populina
98AG31]
Length = 252
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
+ Y++ +P+ LY++NL + +D + LF L V ++ G+MRGQAF+
Sbjct: 15 QTYSSASPSPTLYVQNLCDKLKKEDLRRMLYQLFSVHGKV---LDVVALKGGQMRGQAFI 71
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F ++ + +A+ ++G +F + + I++ R + A
Sbjct: 72 VFRDLQGSTQAMRYLDGTLFLERELKIKYARKRSFA 107
>gi|432953888|ref|XP_004085464.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Oryzias latipes]
Length = 218
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI N+ V ++ + S FG I L+V ++ RMRGQAFV F
Sbjct: 5 PNYTIYINNINDKVKKEELKRSLYALFSQFGQI------LSVVALKTMRMRGQAFVVFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LAAATNALRQLQGFPFYNKPMRIQYAK 85
>gi|268553733|ref|XP_002634853.1| C. briggsae CBR-RNP-2 protein [Caenorhabditis briggsae]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P S LYI NL + + D+ F FG I C T+K MRGQA + F
Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLFAVFKQFGEILDVMCFRTLK------MRGQAHIIFAE 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ A A ++G+ F KPM IQF R A
Sbjct: 60 IPHATAAKEALSGFPFYEKPMKIQFAREDA 89
>gi|33357758|pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
gi|33357759|pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|170103054|ref|XP_001882742.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642113|gb|EDR06370.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
LYI+NL + + P+ + SL G + L V RMRGQAFV+F S E+A
Sbjct: 17 CETLYIQNLNEKIKPE---VLKASLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFASPEVA 73
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+A+ V + KPM I F + + A
Sbjct: 74 KKAMKEVQRFPLYSKPMQISFAKTRSDA 101
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 51 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 104
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 105 VTEMNGRIVGSKPLYV 120
>gi|62857647|ref|NP_001016784.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|60618430|gb|AAH90598.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|89273875|emb|CAJ82017.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
Length = 282
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ ++
Sbjct: 61 EISSATNALRSMQGFPFYDKPMRIQYSKS 89
>gi|320162914|gb|EFW39813.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 844
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 26/169 (15%)
Query: 16 TPKASQTEDKDDSVAKELEEPNKED--SDVKPFATPE--------------ELEMGKLPP 59
TPK + + +K+ E+P ++ S P TP +L+ +L P
Sbjct: 631 TPKQPKRSKRQKPPSKQPEQPQQQSAASTKPPVNTPAKTTDYASITPLSDADLQAKRLSP 690
Query: 60 EEILSLPMFKN--YAAGNPASVLYIKNLAKDVIPDDFFFIF--------GSLFGSIDAAK 109
+ + F Y G+ +S L+I+NL+ D + ++ G+ S+ AA
Sbjct: 691 DVLAQSKAFAKAEYQPGSQSSRLFIRNLSDRTRLRDLYAVYNRYRAGLTGAPEASLAAAS 750
Query: 110 CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
+ ++L+ G + QAFVT + A AL +G V KGKP+++ F
Sbjct: 751 QNVRIQLITGGPFKHQAFVTLANEACASVALEETHGVVIKGKPLVVHFA 799
>gi|123430856|ref|XP_001307983.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889640|gb|EAX95053.1| hypothetical protein TVAG_428560 [Trichomonas vaginalis G3]
Length = 186
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 12/93 (12%)
Query: 76 PASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P+ L+++NL + DD +++F S+ ++ ++G+ RGQA+V+FP
Sbjct: 7 PSQTLFVRNLTDKIPIDDLKRNLYYLFSSVAPVVEIN--------ARKGQSRGQAWVSFP 58
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
++E A + N + F GK + I++ +NP+ +
Sbjct: 59 NLESAEIIMKQFNNFPFLGKALQIEYSKNPSKS 91
>gi|452001712|gb|EMD94171.1| hypothetical protein COCHEDRAFT_1020240 [Cochliobolus
heterostrophus C5]
Length = 325
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%), Gaps = 9/84 (10%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR--MRGQAFVTFPSV 133
P +VLYI NL +V PD +F S FG I++ V+++ + R RG A+V + +V
Sbjct: 134 PHNVLYIGNLYYEVTPDQLKRVF-SRFGDIES------VRMVYDNRGLSRGFAYVEYKNV 186
Query: 134 ELAHRALNLVNGYVFKGKPMIIQF 157
A A++ ++ VF+G+ +++Q+
Sbjct: 187 SDAQAAIDNLDMQVFEGRNLVVQY 210
>gi|308457664|ref|XP_003091202.1| CRE-RNP-2 protein [Caenorhabditis remanei]
gi|308257956|gb|EFP01909.1| CRE-RNP-2 protein [Caenorhabditis remanei]
Length = 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P S LYI NL + + D+ FG I + C T+K MRGQA V F
Sbjct: 6 PNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLK------MRGQAHVIFTD 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V A A + G+ F KPM IQF R + A
Sbjct: 60 VSSAAAAKEALTGFPFYEKPMKIQFAREESDA 91
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
A+ LY+KNL D I D+ S FGSI + K V L Q+G +G FV F + E A
Sbjct: 314 AANLYLKNL-DDKIDDEKLKELFSEFGSITSCK----VMLDQQGLSKGSGFVAFSTPEEA 368
Query: 137 HRALNLVNGYVFKGKPMII 155
RALN +NG + KP+ +
Sbjct: 369 SRALNGMNGKMIGKKPLYV 387
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
A+ LY+KNL D I D+ S FGSI + K V L Q+G +G FV F + E A
Sbjct: 304 AANLYLKNL-DDKIDDEKLKELFSEFGSITSCK----VMLDQQGLSKGSGFVAFSTPEEA 358
Query: 137 HRALNLVNGYVFKGKPMII 155
RALN +NG + KP+ +
Sbjct: 359 SRALNGMNGKMIGKKPLYV 377
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 72 AAGNPA-SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
A G+P + +Y+KNL++ +D F S +GSI +A V Q G+ +G FV F
Sbjct: 195 ATGSPKFTNVYVKNLSETTSDEDLKKFF-SNYGSITSA----IVMKDQSGKSKGFGFVNF 249
Query: 131 PSVELAHRALNLVNGYVFKGKPMII 155
S + A A+ +NG F K +
Sbjct: 250 QSPDSAAAAVEKLNGTTFNDKVWYV 274
>gi|405974726|gb|EKC39350.1| U1 small nuclear ribonucleoprotein A [Crassostrea gigas]
Length = 541
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 74 GNPASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
P +YI NL KD + + IF S FG I L + M+ +MRGQAFV
Sbjct: 312 ARPNQTIYINNLNEKVKKDELKKSLYAIF-SQFGQI------LDIVAMKTLKMRGQAFVI 364
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
F + A+ AL + G+ F KPM IQ+ +
Sbjct: 365 FKDINSANSALRSMQGFPFYEKPMRIQYSK 394
>gi|358379777|gb|EHK17456.1| hypothetical protein TRIVIDRAFT_194675 [Trichoderma virens Gv29-8]
Length = 196
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 76 PASVLYIKNL--AKDVIPD--DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY+ NL AK PD ++ S FG + L + ++ MRGQA + F
Sbjct: 25 PNQTLYVTNLPSAKIQKPDLRTALYMLFSTFGPV------LDIVALKTMEMRGQAHIVFR 78
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ ++G F G+PM IQ+ ++
Sbjct: 79 DIQAATQAMRSLDGQTFLGRPMKIQYAKS 107
>gi|324507603|gb|ADY43223.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 226
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I + + + +MRGQA V F
Sbjct: 6 PNHTIYINNLNEKTKKDELKKALYAIF-SQFGQI------IDILAFKTLKMRGQAHVIFK 58
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQF R
Sbjct: 59 EISSATNALRAMQGFPFYDKPMRIQFAR 86
>gi|242247219|ref|NP_001156146.1| U1 small nuclear ribonucleoprotein A-like [Acyrthosiphon pisum]
gi|239790514|dbj|BAH71814.1| ACYPI003668 [Acyrthosiphon pisum]
Length = 224
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI NL + + DD + S FG I L + M+ +M GQAFV F
Sbjct: 6 PNHTIYINNLNEKIKKDDLKKSLYAIFSQFGQI------LDIVAMKGIKMNGQAFVIFKD 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ + AL + G+ F KPM IQF ++ +
Sbjct: 60 ITSSTNALRAMQGFPFYDKPMRIQFAKSES 89
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR RG FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSRGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ +
Sbjct: 350 VTEMNGIIVATKPLYVSLAH 369
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFEKHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELSGKQIYV 263
>gi|406605793|emb|CCH42784.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 436
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
A G S +Y+ NL DD F +F + G + AA+ +K GR G A V F
Sbjct: 352 ANGEKNSTIYVDNLPFATSNDDLFELFETA-GRVSAAE----IKYDPTGRPAGSAVVKFE 406
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
S E A A+N +N Y + G+P+ I F + P
Sbjct: 407 SEESAEAAINELNEYSYGGRPLNITFAKLP 436
>gi|170284570|gb|AAI61141.1| rbm23 protein [Xenopus (Silurana) tropicalis]
Length = 272
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GNP + LY+ +L ++ D IF FG I+ ++L++E GR
Sbjct: 87 MSNNLQRGNPGPMRLYVGSLHFNITEDMLRGIF-EPFGKIE------NIQLLKEPDTGRS 139
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153
+G F+TF E A RAL +NG+ G+PM
Sbjct: 140 KGFGFITFTDAECARRALEQLNGFELAGRPM 170
>gi|425768949|gb|EKV07460.1| hypothetical protein PDIG_73210 [Penicillium digitatum PHI26]
gi|425776211|gb|EKV14439.1| hypothetical protein PDIP_43690 [Penicillium digitatum Pd1]
Length = 491
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 68 FKNYAA--GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G ++V+Y++NL +D +F S G +D A+ ++ GR RG
Sbjct: 377 FTDYATSNGEKSAVIYVRNLPWSTCNEDLIDLF-STIGKVDRAE----IQYEPNGRSRGT 431
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + + A A+ +GY + G+P+ I F
Sbjct: 432 GVVQFDTPDTAETAIAKFSGYQYGGRPLGITF 463
>gi|291234607|ref|XP_002737237.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Saccoglossus
kowalevskii]
Length = 249
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDELKKSLYAIF-SQFGQI------LDIVAMKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM I + +
Sbjct: 58 EISSATNALRSMQGFPFYDKPMRIGYSK 85
>gi|297743790|emb|CBI36673.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P +++ A A+ L I++L + IP D LF S A+ +V+ GR+R
Sbjct: 9 PRTQSFEAEKSAATLLIRHLP-EAIPQD---TLSRLFSSYGAS----SVRPSTSGRLRNC 60
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
AFV F S LA +AL +NG F GK ++++ P
Sbjct: 61 AFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKP 96
>gi|387018112|gb|AFJ51174.1| u2 small nuclear ribonucleoprotein B-like [Crotalus adamanteus]
Length = 225
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LYI N+ + D+ +LF + +K M +MRGQAF+ F +
Sbjct: 5 PNHTLYINNVNDKIKKDELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFIIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F GKPM IQ+ +
Sbjct: 62 ATNALRQLQGFPFYGKPMRIQYAK 85
>gi|358373502|dbj|GAA90100.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 196
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
A G P LY NL + D ++ S +G++ L V M+ +MRGQA +
Sbjct: 19 ATGLPNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTV------LDVVAMKTQKMRGQAHI 72
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
F V+ + +A+ + G+ F GK M I + + P+
Sbjct: 73 VFKDVQASTQAMRALQGFEFFGKQMKIVYAKGPS 106
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 7 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 60
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 61 VTEMNGRIVGSKPLYV 76
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|90103266|gb|ABD85478.1| small nuclear ribonucleoprotein polypeptide A [Ictalurus punctatus]
Length = 156
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I TVK MRGQAFV F V
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVARTVK------MRGQAFVIFKEVN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIQYAKQ 89
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 46 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 99
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 100 VTEMNGRIVGSKPLYV 115
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 302 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 355
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 356 VTEMNGRIVGSKPLYV 371
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLWKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|339255862|ref|XP_003370674.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316965776|gb|EFV50450.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 220
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +Y+ NL + + D+ ++F G+I C T+K MRGQAF+ F
Sbjct: 6 PNQTIYVNNLNEKIKKDELKRALHAVFHQFGTILDIVCLKTLK------MRGQAFIVFKD 59
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL + G+ F KPM IQ+ ++ + A
Sbjct: 60 LNSATNALRSMQGFPFYDKPMRIQYAKSESDA 91
>gi|451998492|gb|EMD90956.1| hypothetical protein COCHEDRAFT_1137201 [Cochliobolus
heterostrophus C5]
Length = 178
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 74 GNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
G P LY++NL + DD ++ + +G I L + ++ +MRGQA V F
Sbjct: 16 GIPNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVI------LEIVALKTMKMRGQAHVVF 69
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V+ + +A+ + G+ F GK M I + +
Sbjct: 70 RDVDASTQAMRALQGFTFFGKDMQIAYAKT 99
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 46 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 99
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 100 VTEMNGRIVGSKPLYV 115
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+YIKN++ +V D+F +F + FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 247 IYIKNISGEVTDDEFRDLF-TPFGDVTSS----SLARDQEGKSRGFGFVNFTTHEAAAKA 301
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 302 VDDLNGKDFRGQDLYV 317
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S+FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRKEFSVFGTITSAKV-----MMDDGRSKGFGFVCFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 343 VTDMNGRIVGTKPLYV 358
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+ +L DV F F ++ + C + M R G A+V F ++ A RA
Sbjct: 4 LYVGDLHSDVTEAMLFEKFSTVGAVLSIRVC----RDMITRRSLGYAYVNFQNMADAERA 59
Query: 140 LNLVNGYVFKGKPMIIQFG-RNPAAAK 165
L+ +N + KG+PM I + R+P+ K
Sbjct: 60 LDTMNFDILKGRPMRIMWSQRDPSLRK 86
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLWKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+A DV DDF +F +G + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAADVTEDDFRQLF-EKYGDVTSS----SLARDQEGKSRGFGFVNFTTHESASKA 296
Query: 140 LNLVNGYVFKGKPMII 155
++ +N F G+ + +
Sbjct: 297 VDELNNKDFHGQDLYV 312
>gi|226293434|gb|EEH48854.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb18]
Length = 478
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G +++++++NL +D +F S G ++ A+ ++ GR RG V F
Sbjct: 371 SGGERSAIIFVRNLPWSTCNEDLVDLF-STIGKVERAE----IQYEPNGRSRGTGVVEFD 425
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
SVE A A+N GY + G+P+ + F
Sbjct: 426 SVENAETAINKFTGYQYGGRPLGLTF 451
>gi|432953883|ref|XP_004085463.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Oryzias latipes]
Length = 217
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI N+ V ++ + S FG I L+V ++ RMRGQAFV F
Sbjct: 5 PNYTIYINNINDKVKKEELKRSLYALFSQFGQI------LSVVALKTMRMRGQAFVVFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LAAATNALRQLQGFPFYNKPMRIQYAKT 86
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ + S FGSI K + +EGR +G + F S E A +A
Sbjct: 394 LYIKNL-DDTIDDEKLWREFSSFGSISRVKI-----MREEGRSKGFGLICFSSPEEATKA 447
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAK 165
+ +NG + KP+ I + P K
Sbjct: 448 MAEMNGRILGSKPLYIALAQRPXERK 473
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 225 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 278
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 279 VTEMNGRIVGSKPLYV 294
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|428171194|gb|EKX40113.1| hypothetical protein GUITHDRAFT_113851 [Guillardia theta CCMP2712]
Length = 336
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 29/113 (25%)
Query: 76 PASVLYIKNLAKDVIPD---DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P + LYI+NL + V P + + S +G I L V+ ++ +MRGQAFV F
Sbjct: 84 PCNTLYIRNLRERVKPRRMRELLYAVFSQYGKI------LDVRALKTQKMRGQAFVCFDE 137
Query: 133 V----ELAH----------------RALNLVNGYVFKGKPMIIQFGRNPAAAK 165
+ +L H A +NG+ F + ++IQF ++P+ A
Sbjct: 138 LKAREQLEHVQGQSMLTPCACQDAVHAKEELNGFSFLNRTLVIQFAKSPSHAH 190
>gi|395330403|gb|EJF62786.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 270
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
++ P + LY+KNL V D+ F + +G I L V ++ +M+GQAFV
Sbjct: 2 SSTQPNTTLYLKNLNDKVKKDELRAQLFALFTTYGRI------LDVVALKGPKMKGQAFV 55
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F + A AL G VF KPM I++ + + A
Sbjct: 56 VFTDLAGATAALRGCEGMVFYDKPMHIEYAKTKSYA 91
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 293 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 346
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 347 VTEMNGRIVGSKPLYV 362
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 309 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 362
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 363 VTEMNGRIVGSKPLYV 378
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 313 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 366
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 367 VTEMNGRIVGSKPLYV 382
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V ++ +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 193 VYIKNFGEEVDDENLRELF-SQFGKT------LSVKVMRDCSGKSKGFGFVSYEKHEDAN 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG GK + +
Sbjct: 246 KAVEEMNGKEMSGKSIFV 263
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E+L Y N LYIKNL D I D+ S FGSI +AK ++++G
Sbjct: 281 ELLKQERISRYQGVN----LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDG 330
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F S E A +A+ +NG + KP+ +
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 271 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 324
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 325 VTEMNGRIVGSKPLYV 340
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K + Q G +G FV+F + E A +A
Sbjct: 406 LYLKNL-DDGITDDQLRELFSNFGKITSCK----IMRDQNGVSKGSGFVSFSTREEASQA 460
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L +NG + GKP+ + F +
Sbjct: 461 LTEMNGKMISGKPLYVAFAQ 480
>gi|119193232|ref|XP_001247222.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|320040131|gb|EFW22065.1| pre-mRNA branch site protein p14 [Coccidioides posadasii str.
Silveira]
gi|392863538|gb|EAS35707.2| pre-mRNA branch site protein p14 [Coccidioides immitis RS]
Length = 115
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL+ +V DD F +FG FG I + G+ +G AFV + V A +
Sbjct: 14 ILFVKNLSYNVTADDLFDLFGK-FGPIRQIRQGIA------ANSKGTAFVVYEDVHDAKQ 66
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
A + +NG+ F+ + +++ + + AK
Sbjct: 67 ACDKLNGFNFQNRYLVVLYHQPEKMAKS 94
>gi|377835922|ref|XP_003688944.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + Q +MRGQ FV F V
Sbjct: 14 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSQSLKMRGQVFVIFKEVT 66
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
+A AL + G+ F KPM IQ+ +
Sbjct: 67 IATNALRSMLGFPFYDKPMRIQYAKT 92
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 318 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 371
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 372 VTEMNGRIVGSKPLYV 387
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V D+ +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 215 VYIKNFGEEVDDDNLKELF-SQFGKT------LSVKVMRDPSGKSKGFGFVSYEKHEDAN 267
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG GK + +
Sbjct: 268 KAVEEMNGKEMSGKAIFV 285
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 59 PEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ 118
P LSL +F + P + LY+ +L DV + F + C + M
Sbjct: 16 PSTELSLEVF--FRGHYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVC----RDMI 69
Query: 119 EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
R G A+V F A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 70 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK 117
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|393233936|gb|EJD41503.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 249
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
+ LYI+NL + + +LF S L V RMRGQAFV+F S ++A
Sbjct: 23 SETLYIQNLNEKIKITVMKQTLKNLFKSYGNV---LDVVAHSNIRMRGQAFVSFESKDIA 79
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+AL V G+ KPM + F + + A
Sbjct: 80 RKALKEVKGFPLYSKPMQVSFAKTRSDA 107
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 107 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 160
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
+ +NG + KP+ + + K +
Sbjct: 161 VTEMNGRIVGSKPLYVALAQRKEERKAH 188
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPS 132
N + +YIKN D+ + IF S FG I L+VK+M + GR +G FV+F S
Sbjct: 187 NEFTNVYIKNFGDDMDDERLKEIF-SHFGKI------LSVKVMTDSRGRSKGFGFVSFDS 239
Query: 133 VELAHRALNLVNGYVFKGKPMII 155
E A RA+ ++NG G+P+ +
Sbjct: 240 HEAAQRAVEIMNGKDLSGQPLFV 262
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI K + +EGR +G + F S E A +A
Sbjct: 295 LYIKNL-DDSIDDERLRREFSSFGSISRVKV-----MKEEGRSKGFGLICFSSPEEATKA 348
Query: 140 LNLVNGYVFKGKPMIIQFGRNP 161
+ +NG + K + I + P
Sbjct: 349 MVEMNGRILGSKSLNIALAQRP 370
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHR 138
++IKNL K + + F S FG I L+ K+M + RG AFV F S A R
Sbjct: 100 VFIKNLHKSIDNKTLYEHF-SAFGKI------LSSKVMSDDAGSRGYAFVHFQSQTAADR 152
Query: 139 ALNLVNGYVFKGKPMII 155
A+ +NG + KG + +
Sbjct: 153 AIEAMNGALLKGCRLFV 169
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|358054072|dbj|GAA99871.1| hypothetical protein E5Q_06574 [Mixia osmundae IAM 14324]
Length = 302
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
+ +YI NL + V + +LF + L V + + RMRGQAFV F + A
Sbjct: 69 SETIYINNLNETVTIKNMKQTLRNLFRNFGTV---LDVVVHRNLRMRGQAFVAFEHKKSA 125
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAA 164
RA+N V + GKPM + + + A A
Sbjct: 126 WRAVNEVKDFPLYGKPMQLAYAKTQADA 153
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|225719260|gb|ACO15476.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI NL V DD + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNGKVRKDDLKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM I F ++
Sbjct: 59 ITSATNALRSMQGFPFYDKPMRITFSKS 86
>gi|116781538|gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +Y+ NL + V ++ + S FG I T KL RGQA+V F
Sbjct: 8 PNQTIYVNNLNERVKKEELKKSLYALFSQFGRIADIVALKTTKL------RGQAWVVFDE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL + G+ F KPM IQ+G++ + A
Sbjct: 62 ITAASNALRQMQGFPFYDKPMRIQYGKSKSDA 93
>gi|449016405|dbj|BAM79807.1| unknown transcriptional coactivator [Cyanidioschyzon merolae strain
10D]
Length = 275
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G+ A V+ + NLA V D +F S+ +I A ++ +EG+ +G A V + +
Sbjct: 35 GSKAVVVSVSNLAPSVTSQDIADLFNSVGPTITA-----FIRHDREGKSKGVATVKYADM 89
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
E A RA+ + G+P+++Q + AAA N
Sbjct: 90 ETAERAVKQFHSLTLDGQPLVVQIESSGAAAALN 123
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|83764541|dbj|BAE54685.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 308
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 199 SGGEKGPVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 253
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ E A A+ GY + G+P+ I F
Sbjct: 254 NAETAETAIAKFTGYQYGGRPLGITF 279
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|240273174|gb|EER36696.1| RNA binding domain-containing protein [Ajellomyces capsulatus H143]
gi|325089200|gb|EGC42510.1| RNA binding domain-containing protein [Ajellomyces capsulatus H88]
Length = 190
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDIVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I + R
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYAR 95
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|261858408|dbj|BAI45726.1| RNA binding motif protein 23 [synthetic construct]
Length = 406
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 269
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 270 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V ++ +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 193 VYIKNFGEEVDDENLRELF-SQFGKT------LSVKVMRDCSGKSKGFGFVSYEKHEDAN 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG GK + +
Sbjct: 246 KAVEEMNGKEMSGKSIFV 263
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|309266585|ref|XP_003086803.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 282
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 75 NPASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P +YI +L + + D+ + IF S FG I L + + Q +MRGQ+FV F
Sbjct: 7 RPNHTIYINSLNEKIKKDELKKSPYAIF-SQFGQI------LDILVSQSLKMRGQSFVIF 59
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V AL + G+ F GKPM IQ+ +
Sbjct: 60 KEVSSTINALRSMQGFPFYGKPMHIQYAKT 89
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|384496525|gb|EIE87016.1| hypothetical protein RO3G_11727 [Rhizopus delemar RA 99-880]
Length = 292
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
RMRGQAFV +P E A +A+ + +V KPMI+Q+ RN
Sbjct: 108 RMRGQAFVAYPDQESADKAIKELQHFVLYDKPMIVQYSRN 147
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|119586626|gb|EAW66222.1| RNA binding motif protein 23, isoform CRA_a [Homo sapiens]
Length = 483
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 295 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 347
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 348 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 380
>gi|116734698|ref|NP_001070820.1| probable RNA-binding protein 23 isoform 3 [Homo sapiens]
gi|119586628|gb|EAW66224.1| RNA binding motif protein 23, isoform CRA_c [Homo sapiens]
Length = 405
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 269
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 270 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|119586630|gb|EAW66226.1| RNA binding motif protein 23, isoform CRA_e [Homo sapiens]
Length = 449
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 261 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 313
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 314 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 346
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|326433216|gb|EGD78786.1| hypothetical protein PTSG_01762 [Salpingoeca sp. ATCC 50818]
Length = 462
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
+ +YI NL + V D+ ++F L + M+ RGQAFV F SV+ A
Sbjct: 174 NTIYINNLNEKVKEDELKKALTAVFKQFGKI---LQIVAMKSYYRRGQAFVVFDSVDSAK 230
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
A++ + G+ F GKPM I F +
Sbjct: 231 AAISAMQGFPFVGKPMRINFAK 252
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|397473313|ref|XP_003808159.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Pan paniscus]
Length = 442
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 313 LYIKNL-DDTIDDEKLRREFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 366
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 367 VTEMNGRIVGSKPLYV 382
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V ++ +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 193 VYIKNFGEEVDDENLRELF-SQFGKT------LSVKVMRDCSGKSKGFGFVSYEKHEDAN 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG GK + +
Sbjct: 246 KAVEEMNGKEMSGKSIFV 263
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 321 LYLKNL-DDGISDDQLRELFSTFGKITSCK----VMRDQNGVSKGSGFVAFSTREEASQA 375
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + GKP+ + F +
Sbjct: 376 ITEMNGKMLSGKPLYVAFAQ 395
>gi|116734696|ref|NP_001070819.1| probable RNA-binding protein 23 isoform 1 [Homo sapiens]
gi|34925229|sp|Q86U06.1|RBM23_HUMAN RecName: Full=Probable RNA-binding protein 23; AltName:
Full=RNA-binding motif protein 23; AltName:
Full=RNA-binding region-containing protein 4; AltName:
Full=Splicing factor SF2
gi|28071058|emb|CAD61910.1| unnamed protein product [Homo sapiens]
gi|119586629|gb|EAW66225.1| RNA binding motif protein 23, isoform CRA_d [Homo sapiens]
Length = 439
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|7022544|dbj|BAA91638.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 269
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 270 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K + Q G +G FV+F + E A +A
Sbjct: 406 LYLKNL-DDGITDDQLRELFSNFGKITSCK----IMRDQNGVSKGSGFVSFSTREEASQA 460
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L +NG + GKP+ + F +
Sbjct: 461 LTEMNGKMISGKPLYVAFAQ 480
>gi|261203825|ref|XP_002629126.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239586911|gb|EEQ69554.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|327356167|gb|EGE85024.1| hypothetical protein BDDG_07969 [Ajellomyces dermatitidis ATCC
18188]
Length = 471
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G ++ +Y++NL +D +F S G ++ A+ ++ GR RG V F
Sbjct: 364 SGGERSATIYVRNLPWSTCNEDLVDLF-STIGKVERAE----IQYEPNGRSRGTGVVEFD 418
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
S E A A+N GY + G+P+ + F
Sbjct: 419 SAENAETAINKFTGYQYGGRPLGLTF 444
>gi|119586634|gb|EAW66230.1| RNA binding motif protein 23, isoform CRA_h [Homo sapiens]
Length = 467
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 279 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 331
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 332 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 364
>gi|400593014|gb|EJP61025.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 481
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 66 PMFKNYAAGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRG 124
P N +G S ++Y++NL DD +F ++ G ++ A+ ++ GR RG
Sbjct: 368 PFTDNATSGTERSEIIYVRNLPWSTSNDDLIELFTTI-GKVEQAE----IQYEPSGRSRG 422
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + E A A++ GY + G+P+ I F
Sbjct: 423 SGVVKFDTAETAETAISKFQGYQYGGRPLNISF 455
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|63592914|ref|XP_356179.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1 [Mus
musculus]
Length = 281
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 75 NPASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P +YI +L + + D+ + IF S FG I L + + Q +MRGQ+FV F
Sbjct: 7 RPNHTIYINSLNEKIKKDELKKSPYAIF-SQFGQI------LDILVSQSLKMRGQSFVIF 59
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V AL + G+ F GKPM IQ+ +
Sbjct: 60 KEVSSTINALRSMQGFPFYGKPMHIQYAKT 89
>gi|12803481|gb|AAH02566.1| RNA binding motif protein 23 [Homo sapiens]
gi|189055004|dbj|BAG37988.1| unnamed protein product [Homo sapiens]
gi|312151810|gb|ADQ32417.1| RNA binding motif protein 23 [synthetic construct]
Length = 424
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN++ DV ++F +F +G + ++ ++ QEG+ RG FV F + E A++A
Sbjct: 242 VYVKNISPDVTDNEFRELF-EKYGDVTSS----SLARDQEGKSRGFGFVNFTTHEAAYKA 296
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 297 VDELNGNDFRGQELYV 312
>gi|1431699|pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431701|pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431703|pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
gi|28949021|pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
gi|28949022|pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution Reveals
A Pre- Organized C-Terminal Helix
gi|269914461|pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
gi|269914463|pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme Self-Ligation
Product, In Complex With U1a Rbd
Length = 97
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 59
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 60 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ + S FGSI K + +EGR +G + F S E A +A
Sbjct: 394 LYIKNL-DDTIDDEKLWREFSSFGSISRVKI-----MREEGRSKGFGLICFSSPEEATKA 447
Query: 140 LNLVNGYVFKGKPMIIQFGRNP 161
+ +NG + KP+ I + P
Sbjct: 448 MAEMNGRILGSKPLYIALAQKP 469
>gi|148689095|gb|EDL21042.1| mCG15722 [Mus musculus]
Length = 281
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 75 NPASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P +YI +L + + D+ + IF S FG I L + + Q +MRGQ+FV F
Sbjct: 7 RPNHTIYINSLNEKIKKDELKKSPYAIF-SQFGQI------LDILVSQSLKMRGQSFVIF 59
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V AL + G+ F GKPM IQ+ +
Sbjct: 60 KEVSSTINALRSMQGFPFYGKPMHIQYAKT 89
>gi|116734694|ref|NP_060577.3| probable RNA-binding protein 23 isoform 2 [Homo sapiens]
gi|18848317|gb|AAH24208.1| RNA binding motif protein 23 [Homo sapiens]
gi|119586627|gb|EAW66223.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
gi|119586633|gb|EAW66229.1| RNA binding motif protein 23, isoform CRA_b [Homo sapiens]
Length = 423
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+A DV DDF +F +G + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIAADVTEDDFRQLF-EKYGDVTSS----SLARDQEGKSRGFGFVNFTTHESAFKA 296
Query: 140 LNLVNGYVFKGKPMII 155
++ +N F G+ + +
Sbjct: 297 VDELNNKDFHGQDLYV 312
>gi|397473315|ref|XP_003808160.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Pan paniscus]
Length = 408
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 269
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 270 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|391870089|gb|EIT79277.1| hypothetical protein Ao3042_04344 [Aspergillus oryzae 3.042]
Length = 432
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 323 SGGEKGPVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 377
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ E A A+ GY + G+P+ I F
Sbjct: 378 NAETAETAIAKFTGYQYGGRPLGITF 403
>gi|171849013|pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|171849018|pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|171849022|pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group I
Intron
gi|290790099|pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 58 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 88
>gi|290562822|gb|ADD38806.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 74 GNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P+ +YI NL + V +D + S FG I L + ++ +MRGQAFV F
Sbjct: 3 ARPSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQI------LEIVALKTLKMRGQAFVIF 56
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A A+ + G+ F KPM I F +
Sbjct: 57 KEITSATNAMRSMQGFPFYDKPMRIAFSK 85
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 324 LYLKNL-DDSIGDDQLRELFSNFGKITSCK----VMRDQNGLSKGSGFVAFSTREEASQA 378
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L +NG + GKP+ + F +
Sbjct: 379 LTEMNGKMISGKPLYVAFAQ 398
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+++KNL++ +D IFG +G+I +A V + +G+ R F+ F + + A RA
Sbjct: 221 VFVKNLSESTTKEDLLKIFGE-YGNITSA----VVMIGMDGKSRCFGFINFENPDAASRA 275
Query: 140 LNLVNG 145
+ +NG
Sbjct: 276 VQELNG 281
>gi|1173326|sp|P45429.1|SNRPA_XENLA RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|65181|emb|CAA41021.1| U1 A protein [Xenopus laevis]
Length = 282
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRNLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 61 ETSSATNALRSMQGFPFYDKPMRIQYSKT 89
>gi|126031306|pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031309|pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031312|pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
gi|126031315|pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To Its
Catalytic Cofactor
Length = 94
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 4 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 56
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 57 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 87
>gi|225684043|gb|EEH22327.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb03]
Length = 314
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F ++A G +++++++NL +D +F S G ++ A+ ++ GR RG
Sbjct: 201 FTDFATSGGERSAIIFVRNLPWSTCNEDLVDLF-STIGKVERAE----IQYEPNGRSRGT 255
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F SVE A A+N GY + G+P+ + F
Sbjct: 256 GVVEFDSVENAETAINKFTGYQYGGRPLGLTF 287
>gi|317138120|ref|XP_001816687.2| RNP domain protein [Aspergillus oryzae RIB40]
Length = 484
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G V+Y++NL +D +F S G +D A+ ++ GR RG V F
Sbjct: 375 SGGEKGPVIYVRNLPWSTCNEDLVDLF-STIGKVDRAE----IQYEPNGRSRGTGVVQFD 429
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ E A A+ GY + G+P+ I F
Sbjct: 430 NAETAETAIAKFTGYQYGGRPLGITF 455
>gi|225710606|gb|ACO11149.1| U1 small nuclear ribonucleoprotein A [Caligus rogercresseyi]
Length = 217
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI NL + V DD + S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQI------LDIVALKTLKMRGQAFVIFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F KPM I F +
Sbjct: 59 ITSGTNALRSMQGFPFYDKPMRISFSK 85
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V ++ +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 193 VYIKNFGEEVDDENLRELF-SQFGKT------LSVKVMRDCSGKSKGFGFVSYEKHEDAN 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG GK + +
Sbjct: 246 KAVEEMNGKEMSGKSIFV 263
>gi|148222234|ref|NP_001080089.1| U1 small nuclear ribonucleoprotein A [Xenopus laevis]
gi|27924189|gb|AAH44979.1| Snf protein [Xenopus laevis]
Length = 282
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRNLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 61 ETSSATNALRSMQGFPFYDKPMRIQYSK 88
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDAIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M Q G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGPT------LSVKVMTDQSGKSKGFGFVSFEKHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|367052635|ref|XP_003656696.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
gi|347003961|gb|AEO70360.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
Length = 203
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P LY+ NL K+ + + +F S +GS+ L V ++ +MRGQA + +
Sbjct: 20 PNQTLYVTNLPSAKIQKEDLRTALYMLF-STYGSV------LDVVALKTMKMRGQAHIVY 72
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ ++G+ F G+PM I + ++
Sbjct: 73 KDIQTATQAMRSLDGFEFLGRPMKISYAKS 102
>gi|378726702|gb|EHY53161.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 256
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR--GQAFVTFPSV 133
P+S +Y+KNL + + D +F ++ G + L+ + ++ GQAFV F S
Sbjct: 13 PSSTVYVKNLEERIKIDQLKEALTEIF-----SEYGNIIDLVAKKNLKAKGQAFVVFDSA 67
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
E A +A+ VNG+ KPM + F R + A
Sbjct: 68 ESAAKAIEEVNGFELFDKPMQLDFARTRSDA 98
>gi|52696011|pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
gi|75765951|pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX THAT
Includes All Catalytic Metal Ion Ligands.
gi|262367893|pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367896|pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367899|pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367902|pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367905|pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367908|pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367911|pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367914|pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367929|pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367932|pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367935|pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367938|pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Man6p
gi|262367941|pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367944|pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367947|pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367950|pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|266618687|pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|304445913|pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445915|pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445917|pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
gi|304445919|pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
gi|304445933|pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|327533656|pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
gi|345110840|pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
gi|345110843|pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Ca2+ Bound
gi|345110846|pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
gi|345110849|pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase Ribozyme-Substrate
Preligation Complex, C47u Mutant, Mg2+ Bound
gi|367460217|pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
gi|367460220|pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
gi|367460223|pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
gi|367460226|pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|255938712|ref|XP_002560126.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584747|emb|CAP74273.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 188
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 66 PMFKNYAAGNPASVLYIKNLA-KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRG 124
P K G P LY NL K + +D SLF + L V M+ +MRG
Sbjct: 12 PDSKAVTPGAPNQTLYCTNLPDKRIQKNDLRTALYSLFSTYGTV---LDVVAMKTSKMRG 68
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
QA + F V+ + +AL + G+ F GK M I + +
Sbjct: 69 QAHIVFKDVQASTQALRALQGFEFFGKQMKIVYAK 103
>gi|225713086|gb|ACO12389.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 74 GNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P+ +YI NL + V +D + S FG I L + ++ +MRGQAFV F
Sbjct: 3 ARPSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQI------LEIVALKTLKMRGQAFVIF 56
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A A+ + G+ F KPM I F +
Sbjct: 57 KEITSATNAMRSMQGFPFYDKPMRIAFSK 85
>gi|440355222|gb|AGC00413.1| SNF [Antheraea pernyi]
Length = 222
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 EISSATVALRSMQGFPFYDKPMRIQYSK 85
>gi|134084710|emb|CAK43367.1| unnamed protein product [Aspergillus niger]
gi|350630864|gb|EHA19236.1| hypothetical protein ASPNIDRAFT_126281 [Aspergillus niger ATCC
1015]
Length = 177
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 75 NPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+P LY NL + D ++ S +G++ L V M+ +MRGQA + F
Sbjct: 3 DPNCSLYCTNLPDKLRKHDLRLSLYMLFSTYGTV------LDVVAMKTQKMRGQAHIVFK 56
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V+ + +A+ + G+ F GK M I + + P+
Sbjct: 57 DVQASTQAMRALQGFEFFGKQMKIVYAKGPS 87
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|22219383|pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|22219386|pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|24987694|pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987697|pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987701|pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987705|pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987712|pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987713|pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|49259013|pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
gi|49259015|pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
gi|49259033|pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
gi|49259520|pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
gi|49259522|pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
gi|49259524|pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
gi|49259526|pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
gi|49259528|pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
gi|49259530|pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
gi|49259532|pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
gi|145580050|pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
gi|145580056|pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91
>gi|281500860|pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500861|pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500862|pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500863|pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 59
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 60 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|119472580|ref|XP_001258373.1| RNP domain protein [Neosartorya fischeri NRRL 181]
gi|119406525|gb|EAW16476.1| RNP domain protein [Neosartorya fischeri NRRL 181]
Length = 463
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G + ++Y++NL DD +F S G ++ A+ ++ GR RG V F
Sbjct: 354 SGGEKSPIIYVRNLPWSTCNDDLVDLF-STIGKVERAE----IQYEPNGRSRGTGVVQFD 408
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ E A A+ GY + G+P+ I F
Sbjct: 409 NAETAETAIAKFTGYQYGGRPLGITF 434
>gi|409050372|gb|EKM59849.1| hypothetical protein PHACADRAFT_181793 [Phanerochaete carnosa
HHB-10118-sp]
Length = 258
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
++ P + LYIKNL V ++ +LF + + V ++ +MRGQAFV F
Sbjct: 2 SSTQPQATLYIKNLNDKVNKEELKHQLHALFTTYGRV---IDVVALKTQKMRGQAFVVFG 58
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL G F KPM I++ + + A
Sbjct: 59 DLAGATAALRACEGLDFYDKPMHIEYAKQKSYA 91
>gi|397473311|ref|XP_003808158.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Pan paniscus]
Length = 426
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|426376372|ref|XP_004054975.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Gorilla
gorilla gorilla]
Length = 437
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
NP + L +KNL K+V + F F FG I + L ++ +G RG AF+ F S E
Sbjct: 168 NPKANLLVKNLDKEVTQQELFDSFKQ-FGDIQS----LKLETYPDGSSRGYAFIQFQSEE 222
Query: 135 LAHRALNLVNGYVFKGKPMII 155
A +ALN +N KGK + I
Sbjct: 223 EAEKALNAMNQAEIKGKKIEI 243
>gi|255953987|ref|XP_002567746.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589457|emb|CAP95601.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 249
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR--GQAFVTFPSV 133
P + +Y+KNL + + D +F ++ G ++++ + ++ GQAF+ F ++
Sbjct: 11 PNATVYVKNLDERIKVDQLKHALEEIF-----SEYGTILEIVAKTNLKAKGQAFIVFDNI 65
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
E A RA+ +NG+ KPM++ + + P+ A
Sbjct: 66 ESATRAIEDINGFDLFEKPMVLDYAKTPSDA 96
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 27 DSVAKELEEPNKEDSDVKPF-------ATPEELEMGKLPPEEILSLPMFKNYAAGNPASV 79
D AK +E N ++ D K + + ELE+ K E+I + K +
Sbjct: 254 DDAAKAVEALNGKNFDGKEWYVGKAQKKSERELEL-KGQHEQITKETVDKYHGTN----- 307
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LYIKNL V ++ +F S FG+I + K+M++ G RG FV+F E A
Sbjct: 308 LYIKNLDDSVGDEELMELF-SEFGTI------TSCKVMRDPNGISRGSGFVSFSIAEGAT 360
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
RAL +NG + GKP+ + +
Sbjct: 361 RALGEMNGKMVAGKPLYVALAQ 382
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
+G + +++KNL + D IFG +G+I +A V +G+ +G FV F +
Sbjct: 198 SGTKFNNVFVKNLLDSMTEADLERIFGE-YGAITSAVVMRDV----DGKSKGFGFVNFAN 252
Query: 133 VELAHRALNLVNGYVFKGKPMII 155
V+ A +A+ +NG F GK +
Sbjct: 253 VDDAAKAVEALNGKNFDGKEWYV 275
>gi|426376374|ref|XP_004054976.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Gorilla
gorilla gorilla]
Length = 403
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 269
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 270 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L + Y N LY+KNL D I D+ S FG+I +AK +++EG
Sbjct: 273 EQLKMERLTRYQGVN----LYVKNL-DDSIDDERLRKEFSPFGTITSAKV-----MLEEG 322
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 323 RSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
>gi|296483628|tpg|DAA25743.1| TPA: RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
M N G+ V LY+ +L ++ D I FG ID + +K + GR +G
Sbjct: 266 MANNLQKGSGGPVRLYVGSLHCNITEDMLRGIL-EPFGKIDNI---VLMKDSETGRSKGY 321
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
F+TF E A RAL +NG+ G+PM I
Sbjct: 322 GFITFSDSECARRALEQLNGFELAGRPMRI 351
>gi|148687025|gb|EDL18972.1| mCG119436 [Mus musculus]
Length = 170
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 79 VLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
+YI NL + + D+ + F S FG I L + + + +MR QAFV F V
Sbjct: 14 TIYINNLNEKIKKDELKKSLYAFFSQFGQI------LDILVSRSLKMRSQAFVIFKEVTS 67
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 68 ATNALRSMQGFPFYDKPMRIQYAKT 92
>gi|266618701|pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
gi|266618702|pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 3 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 55
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 56 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 86
>gi|318065773|ref|NP_001187499.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
gi|308322301|gb|ADO28288.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus furcatus]
gi|308323171|gb|ADO28722.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
Length = 219
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI NL V ++ + S FG I + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNDRVKKEELKRSLYALFSQFGQI------VEIVAMKTMKMRGQAFVVFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LAAATNALRQLQGFPFYNKPMRIQYAK 85
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L + Y N LY+KNL D I D+ S FG+I +AK +++EG
Sbjct: 273 EQLKMERLTRYQGVN----LYVKNL-DDSIDDERLRKEFSPFGTITSAKV-----MLEEG 322
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 323 RSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 82 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDEKGNSK 130
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+ ++ VNG + GK + +
Sbjct: 131 GYGFVHFETEESANTSIEKVNGMLLNGKKVYV 162
>gi|403418853|emb|CCM05553.1| predicted protein [Fibroporia radiculosa]
Length = 123
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + DD + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGDDLYDLFGR-YGSIRQIRIG------NEQKSRGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 287 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 340
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 341 VTEMNGRIVGSKPLYV 356
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V D+ +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 184 VYIKNFGEEVDDDNLKELF-SQFGKT------LSVKVMRDPSGKSKGFGFVSYEKHEDAN 236
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG GK + +
Sbjct: 237 KAVEEMNGKEMSGKAIFV 254
>gi|115497272|ref|NP_001069104.1| probable RNA-binding protein 23 [Bos taurus]
gi|113911797|gb|AAI22594.1| RNA binding motif protein 23 [Bos taurus]
Length = 463
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
M N G+ V LY+ +L ++ D I FG ID + +K + GR +G
Sbjct: 266 MANNLQKGSGGPVRLYVGSLHCNITEDMLRGIL-EPFGKIDNI---VLMKDSETGRSKGY 321
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
F+TF E A RAL +NG+ G+PM I
Sbjct: 322 GFITFSDSECARRALEQLNGFELAGRPMRI 351
>gi|259484735|tpe|CBF81211.1| TPA: U1 small nuclear ribonucleoprotein A, putative
(AFU_orthologue; AFUA_6G06490) [Aspergillus nidulans
FGSC A4]
Length = 188
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 17 GLPNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTV---LDIVAMKTEKMRGQAHVVFKDI 73
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ + +A+ + G+ F GKPM I + +
Sbjct: 74 QASTQAMRALQGFEFFGKPMKIVYAKG 100
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGRN 160
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQR 370
>gi|255553401|ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223543140|gb|EEF44674.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 233
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKNL + V ++ + S +G I L V ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRI------LDVVALKTPKLRGQAWVCFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + G+ F KPM IQ+ +
Sbjct: 62 VMAASNAVRQMQGFPFYDKPMRIQYAK 88
>gi|426376370|ref|XP_004054974.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Gorilla
gorilla gorilla]
Length = 421
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|70992519|ref|XP_751108.1| RNP domain protein [Aspergillus fumigatus Af293]
gi|66848741|gb|EAL89070.1| RNP domain protein [Aspergillus fumigatus Af293]
Length = 480
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G ++Y++NL DD +F S G ++ A+ ++ GR RG V F
Sbjct: 371 SGGEKGPIIYVRNLPWSTCNDDLVDLF-STIGKVERAE----IQYEPNGRSRGTGVVQFD 425
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ E A A+ GY + G+P+ I F
Sbjct: 426 NAETAETAIAKFTGYQYGGRPLGITF 451
>gi|451848678|gb|EMD61983.1| hypothetical protein COCSADRAFT_192065 [Cochliobolus sativus
ND90Pr]
Length = 178
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 74 GNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
G P LY++NL + DD ++ + +G I L + ++ +MRGQA V F
Sbjct: 16 GIPNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVI------LDIVALKTMKMRGQAHVVF 69
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ + +A+ + G+ F GK M I + +
Sbjct: 70 RDIDSSTQAMRALQGFTFFGKDMQIAYAKT 99
>gi|303312245|ref|XP_003066134.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105796|gb|EER23989.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 135
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGL-----TVKLMQEGRM---------RG 124
+L++KNL+ +V DD F +FG FG I A L +KL GR +G
Sbjct: 14 ILFVKNLSYNVTADDLFDLFGK-FGPIRYAALHLPTALAHLKLTISGRQIRQGIAANSKG 72
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
AFV + V A +A + +NG+ F+ + +++ + + AK
Sbjct: 73 TAFVVYEDVHDAKQACDKLNGFNFQNRYLVVLYHQPEKMAKS 114
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K + Q G +G FV+F + E A +A
Sbjct: 207 LYLKNL-DDGITDDQLRELFSNFGKITSCK----IMRDQNGVSKGSGFVSFSTREEASQA 261
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L +NG + GKP+ + F +
Sbjct: 262 LTEMNGKMISGKPLYVAFAQ 281
>gi|10880789|gb|AAG24388.1|AF275678_1 PP239 protein [Homo sapiens]
Length = 418
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 229 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 281
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 282 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 314
>gi|2982060|pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
gi|157874113|pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
gi|157874114|pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 59
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 60 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90
>gi|317150456|ref|XP_001824039.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus oryzae
RIB40]
Length = 251
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 76 PASVLYIKNLAK----DVIPDDFFFIFGSLFGSID-AAKCGLTVKLMQEGRMRGQAFVTF 130
P S +Y++NL + D + + IF ID AK L K GQAF+ F
Sbjct: 13 PNSTVYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAK--------GQAFIVF 64
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
SVE A A++ +NG+ KPM++ F + + A
Sbjct: 65 DSVESASNAIDEINGFELFDKPMVLDFAKTRSDA 98
>gi|159124680|gb|EDP49798.1| RNP domain protein [Aspergillus fumigatus A1163]
Length = 480
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+ G ++Y++NL DD +F S G ++ A+ ++ GR RG V F
Sbjct: 371 SGGEKGPIIYVRNLPWSTCNDDLVDLF-STIGKVERAE----IQYEPNGRSRGTGVVQFD 425
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
+ E A A+ GY + G+P+ I F
Sbjct: 426 NAETAETAIAKFTGYQYGGRPLGITF 451
>gi|393216080|gb|EJD01571.1| pre-mRNA branch site protein p14 [Fomitiporia mediterranea MF3/22]
Length = 123
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL ++ DD + +FG +GSI + G+ E +G AFV + V A
Sbjct: 17 ILFVKNLNYNITGDDLYELFGR-YGSIRQIRLGV------ESNTKGTAFVVYDDVTDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF---GRNPAAA 164
AL +NG+ + + +++ + R AAA
Sbjct: 70 ALEHLNGFHLQERYIVVLYHMPSRQDAAA 98
>gi|282403767|pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403770|pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403773|pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
gi|282403776|pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms Ribozyme
Bound To Glc6p
Length = 90
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + IF S FG I L + + + +MRGQAFV F
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQI------LDILVSRSLKMRGQAFVIFK 54
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
V A AL + G+ F KPM IQ+ + +
Sbjct: 55 EVSSATNALRSMQGFPFYDKPMRIQYAKTDS 85
>gi|325089108|gb|EGC42418.1| RNP domain-containing protein [Ajellomyces capsulatus H88]
Length = 471
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 55 GKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV 114
G +PP + G ++ +Y++NL +D +F S G ++ A+ +
Sbjct: 351 GSVPPNPFTDFAT----SGGERSATIYVRNLPWSTCNEDLVDLF-STIGKVEKAE----I 401
Query: 115 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
+ GR RG V F + E A A+N GY + G+P+ + F
Sbjct: 402 QYEPNGRSRGTGVVEFDTAENAETAINKFTGYQYGGRPLGLTF 444
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 330 LYLKNL-DDSIGDDQLRELFSNFGKITSYK----VMRDQNGLSKGSGFVAFSTREEASQA 384
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L +NG + GKP+ + F +
Sbjct: 385 LTEMNGKMISGKPLYVAFAQ 404
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+++KNL++ +D +FG +GSI +A V + +G+ R F+ F + + A RA
Sbjct: 227 VFVKNLSESTTKEDLLKVFGE-YGSITSA----VVMIGMDGKSRCFGFINFENPDAASRA 281
Query: 140 LNLVNG 145
+ +NG
Sbjct: 282 VQELNG 287
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 61 EILSLPMFKN------YAAGNPASV------LYIKNLAKDVIPDDFFFIFGSLFGSIDAA 108
E+L+ + N Y+ +P+S ++IKNL K + F S FG+I +
Sbjct: 105 EVLNFAVLNNKPIRVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSS-FGTILSC 163
Query: 109 KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
K V + + G+ +G FV + E A A+ +NG + KP+ +
Sbjct: 164 K----VAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 206
>gi|358387229|gb|EHK24824.1| hypothetical protein TRIVIDRAFT_215683 [Trichoderma virens Gv29-8]
Length = 116
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ G +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------GNTKGTAFVVYEDVMDAKQA 68
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S FG I + K V Q G +G FV F + E A +A
Sbjct: 318 LYLKNL-DDSIGDDQLCELFSNFGKITSYK----VMRDQNGLSKGSGFVAFSTREEASQA 372
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
L +NG + GKP+ + F +
Sbjct: 373 LTEMNGKMISGKPLYVAFAQ 392
>gi|392883960|gb|AFM90812.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + D+ SLF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTM---KMRGQAFVIFKELCS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A L + G+ F GKPM IQ+ +
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAK 85
>gi|358060915|dbj|GAA93431.1| hypothetical protein E5Q_00072 [Mixia osmundae IAM 14324]
Length = 298
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY++ L + +D + SLF S+ L V ++ +MRGQAFV + S+
Sbjct: 13 PNTTLYVQGLDASIKKEDLKRLLHSLF-SVHGHL--LDVVALKGPKMRGQAFVVYESLTS 69
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
A A +G +F G+PM I + + + A
Sbjct: 70 ATTARRREDGAIFCGQPMRISYAKTKSHA 98
>gi|119194811|ref|XP_001248009.1| hypothetical protein CIMG_01780 [Coccidioides immitis RS]
Length = 464
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 68 FKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAF 127
F Y G ++ +Y++NL +D +F S G ++ A+ ++ GR RG
Sbjct: 353 FATYG-GERSATIYVRNLPWSTCNEDLVELF-STIGKVERAE----IQYEANGRSRGTGV 406
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F +VE A A++ GY + G+P+ + F
Sbjct: 407 VQFDTVENAETAISKFTGYQYGGRPLGLTF 436
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELA 136
A+ LY+KNL D I ++ S FGSI + K V L Q+G +G FV F + E A
Sbjct: 314 AANLYLKNLG-DTIDEERLKELFSEFGSITSCK----VMLDQQGLSKGSGFVAFSTPEEA 368
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL+ +NG + KP+ +
Sbjct: 369 SRALSEMNGKMIGKKPLYV 387
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 72 AAGNPA-SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
A G+P + +Y+KNL++ +D IF S +G+I +A V Q G+ RG FV F
Sbjct: 205 ANGSPKFTNVYVKNLSETTSDEDLKKIFSS-YGAITSA----IVMKDQNGKSRGFGFVNF 259
Query: 131 PSVELAHRALNLVNGYVFKGK 151
S + A A+ +NG F K
Sbjct: 260 QSPDSAAAAVEKLNGMTFSDK 280
>gi|443720886|gb|ELU10438.1| hypothetical protein CAPTEDRAFT_179768 [Capitella teleta]
Length = 218
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + F IF S FG I + + ++ +MRGQAFV F
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLFAIF-SQFGHI------IDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL + G+ F KPM I + + + A
Sbjct: 58 DISSATNALRSMQGFPFYDKPMRINYSKKDSDA 90
>gi|225560818|gb|EEH09099.1| RNP domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 471
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 55 GKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV 114
G +PP + G ++ +Y++NL +D +F S G ++ A+ +
Sbjct: 351 GSVPPNPFTDFAT----SGGERSATIYVRNLPWSTCNEDLVDLF-STIGKVEKAE----I 401
Query: 115 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
+ GR RG V F + E A A+N GY + G+P+ + F
Sbjct: 402 QYEPNGRSRGTGVVEFDTAENAETAINKFTGYQYGGRPLGLTF 444
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+ DV D+F +F FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 242 VYVKNIGPDVTDDEFRELF-EKFGDVTSS----SLARDQEGKPRGFGFVNFTTHEAAFKA 296
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG F+G+ + +
Sbjct: 297 VEDLNGKDFRGQELYV 312
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 140 LNLVNGYVFKGKPMIIQFGRN 160
+ +NG + KP+ + +
Sbjct: 318 VTEMNGRIVATKPLYVALAQR 338
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 161 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 214 KAVDEMNGKELNGKHIYV 231
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 603 LYVKNL-DDTIDDERLRREFSAFGTIKSAKV-----MMDDGRSKGFGFVYFSSPEEATKA 656
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 657 VTDMNGRIVGTKPLYVTLAQ 676
>gi|384495073|gb|EIE85564.1| hypothetical protein RO3G_10274 [Rhizopus delemar RA 99-880]
Length = 437
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D+ D F F +FG I +A+ ++ Q + RG FV+F E A RA
Sbjct: 102 LYIKNLDLDIESMDLFTHF-RVFGKIVSAR---VMRHPQTNQSRGFGFVSFSRAEDALRA 157
Query: 140 LNLVNGYVFKGKPMIIQF 157
+NG KPM++ F
Sbjct: 158 KQEMNGQRLGSKPMVVAF 175
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L + Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 326 EQLKIERLNRYQGVN----LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEG 375
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F E A +A+ +NG + KP+ +
Sbjct: 376 RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 410
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 134 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGASK 182
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 183 GYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 214
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KN+ D I D+ I FG + + K V + +GR +G FV F + E H A
Sbjct: 317 LYLKNI-DDSINDEGLKILFEEFGQVTSCK----VMVDAQGRSKGSGFVLFATAEAGHSA 371
Query: 140 LNLVNGYVFKGKPMII 155
+N +NG + KP+ +
Sbjct: 372 INGMNGRIVGKKPLYV 387
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL + + + +F S FG+I + K V G+ +G FV + + E A A
Sbjct: 127 LFVKNLEPSIDSKNLYEMFSS-FGTILSCK----VATDSAGQSKGYGFVQYETEESAQDA 181
Query: 140 LNLVNGYVFKGKPMII 155
+N +NG + + M +
Sbjct: 182 INRLNGMLANDREMFV 197
>gi|114052106|ref|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|114052541|ref|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|41017904|sp|Q62189.3|SNRPA_MOUSE RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|349004|gb|AAC37611.1| small nuclear RNA [Mus musculus]
gi|13096860|gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|62740156|gb|AAH94006.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|66794539|gb|AAH96648.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|148692250|gb|EDL24197.1| mCG22754, isoform CRA_a [Mus musculus]
gi|148692251|gb|EDL24198.1| mCG22754, isoform CRA_a [Mus musculus]
Length = 287
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +MRGQAFV F V
Sbjct: 17 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRIMKMRGQAFVIFKEVT 69
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 70 SATNALRSMQGFPFYDKPMRIQYAKT 95
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+ +V D+F +F FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 244 VYVKNINHEVTDDEFRELF-EKFGEVTSS----SLARDQEGKTRGFGFVNFTTHEAAAKA 298
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 299 VDDLNGKDFRGQDLYV 314
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRREFSAFGTIKSAKV-----MMDDGRSKGFGFVYFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 343 VTDMNGRIVGTKPLYV 358
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S+FG+I +AK +M +GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDEHLRREFSVFGTITSAKV-----MMDDGRSKGFGFVCFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +N + KP+ +
Sbjct: 343 VTEMNNRIVGTKPLYV 358
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G+ +
Sbjct: 82 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDETGQSK 130
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + A +++ VNG + GK + +
Sbjct: 131 GYGFVHFDMEQSATQSIEKVNGMLLNGKKVFV 162
>gi|50304193|ref|XP_452046.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641178|emb|CAH02439.1| KLLA0B11594p [Kluyveromyces lactis]
Length = 114
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +Y+KNL + + + + +F A G +K+ + RGQAF+TF
Sbjct: 30 PNNTVYVKNLNDQIKIQTVRESLYMLF---------ATYGEVIKVSMTPKQRGQAFITFK 80
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 163
SV+ A+ AL + +F KP+++QF +
Sbjct: 81 SVDEANLALLSLKDELFFNKPLVLQFSKQTTT 112
>gi|12851426|dbj|BAB29037.1| unnamed protein product [Mus musculus]
Length = 287
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 78 SVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
+YI NL KD + + IF S FG I L + + + +MRGQAFV F V
Sbjct: 16 HTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRIMKMRGQAFVIFKEV 68
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 69 TSATNALRSMQGFPFYDKPMRIQYAKT 95
>gi|358385647|gb|EHK23243.1| hypothetical protein TRIVIDRAFT_127044, partial [Trichoderma virens
Gv29-8]
Length = 453
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 59 PEEILSLPMFKNYAAGNP-ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM 117
P +L P N AG ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 333 PPTVLPNPFTDNATAGTERGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQYE 387
Query: 118 QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 388 PSGRSRGTGVVRFDSAETAETAIAKFQGYQYGGRPLNLSF 427
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L + Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 305 EQLKIERLNRYQGVN----LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEG 354
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F E A +A+ +NG + KP+ +
Sbjct: 355 RSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 389
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 113 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVTQDESGASK 161
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A++++ VNG + GK + +
Sbjct: 162 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 193
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FG+I +AK +M+EGR +G FV F E A +A
Sbjct: 298 LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEGRSKGFGFVCFSQPEEATKA 351
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 352 VTEMNGRIVGSKPLYV 367
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGASK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|392862747|gb|EAS36587.2| RNP domain-containing protein [Coccidioides immitis RS]
Length = 473
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 68 FKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAF 127
F Y G ++ +Y++NL +D +F S G ++ A+ ++ GR RG
Sbjct: 362 FATYG-GERSATIYVRNLPWSTCNEDLVELF-STIGKVERAE----IQYEANGRSRGTGV 415
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F +VE A A++ GY + G+P+ + F
Sbjct: 416 VQFDTVENAETAISKFTGYQYGGRPLGLTF 445
>gi|387914214|gb|AFK10716.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392878676|gb|AFM88170.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884228|gb|AFM90946.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884422|gb|AFM91043.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884424|gb|AFM91044.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + D+ SLF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTM---KMRGQAFVIFKELCS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A L + G+ F GKPM IQ+ +
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAK 85
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + DD ++ G+I +A+ +K ++GR RG FV + + E + RA
Sbjct: 329 LYVKNL-DDSVTDDMLRDEFAVMGTITSARV---MKDAKDGRSRGFGFVCYSTPEESTRA 384
Query: 140 LNLVNGYVFKGKPMII 155
+N +NG + KP+ +
Sbjct: 385 VNEMNGKLIANKPIFV 400
>gi|169769585|ref|XP_001819262.1| RNA binding domain protein [Aspergillus oryzae RIB40]
gi|83767121|dbj|BAE57260.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863485|gb|EIT72793.1| spliceosomal protein snRNP-U1A/U2B [Aspergillus oryzae 3.042]
Length = 193
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
AAG P LY NL + D ++ S +G++ L V M+ RMRGQA +
Sbjct: 19 AAGLPNQTLYCANLPDKLPKYDLRLSLYMLFSTYGTV------LDVVAMKTKRMRGQAHI 72
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
F V+ + +A+ + G+ F GK + I + +
Sbjct: 73 VFKDVQASTQAMRALQGFEFFGKQLKIVYAKG 104
>gi|342885057|gb|EGU85166.1| hypothetical protein FOXB_04281 [Fusarium oxysporum Fo5176]
Length = 243
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR--GQAFVT 129
A+ P S +Y++NL + V D ++F A+ G V ++ + +R GQAFV
Sbjct: 2 ASSMPISTVYVQNLEERVKLDALVDTLRTVF-----AEFGNVVDIVAKKNLRAKGQAFVV 56
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ + E A A+N ++G+ GKPM + F R +
Sbjct: 57 YDNPESAQDAINEIDGFELFGKPMKLAFARTQS 89
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FG+I +AK +M+EGR +G FV F E A +A
Sbjct: 221 LYVKNL-DDTIDDERLRKEFTPFGTITSAKV-----MMEEGRSKGFGFVCFSQPEEATKA 274
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 275 VTEMNGRIVGSKPLYV 290
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGASK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|259481715|tpe|CBF75495.1| TPA: RNP domain protein (AFU_orthologue; AFUA_6G12300) [Aspergillus
nidulans FGSC A4]
Length = 484
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G ++ +Y++NL DD +F S G ++ A+ ++ GR RG
Sbjct: 369 FTDYATSGGEKSNTIYVRNLPWSTCNDDLVDLF-STIGKVERAE----IQYEPNGRSRGT 423
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + + A ++ GY + G+P+ I F
Sbjct: 424 GVVQFDNADTAETSIAKFTGYQYGGRPLGITF 455
>gi|149263421|ref|XP_995150.2| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + Q +MRGQ FV F V
Sbjct: 14 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSQSLKMRGQVFVIFKEVT 66
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
+A AL + G+ F KPM IQ+ +
Sbjct: 67 IATNALWSMLGFPFYDKPMRIQYTKT 92
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFEKHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELSGKQIYV 263
>gi|119467920|ref|XP_001257766.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
gi|119405918|gb|EAW15869.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
Length = 213
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
K+ AG P LY NL + D +LF + L V ++ +MRGQA +
Sbjct: 15 KSVPAGVPNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTV---LDVVALKTEKMRGQAHI 71
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
F V+ + +A+ + G+ F G+ M+ FG N A N
Sbjct: 72 VFKDVQASTQAMRALQGFEFFGREMVGAFGFNGLATGLN 110
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAR 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 24 DKDDSVAKELEEPNKEDSDVKP-FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYI 82
D ++ K +EE N ++ + +P F + ++ + + + + K G + LYI
Sbjct: 238 DSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYI 297
Query: 83 KNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHRALN 141
KNL +++ + F S FGSI VK+MQE G+ +G + F S E A RA+
Sbjct: 298 KNLDENIDDEKLRKEFSS-FGSIS------RVKVMQEEGQSKGFGLICFSSSEDAARAMT 350
Query: 142 LVNGYVFKGKPMII 155
++NG + KP+ I
Sbjct: 351 VMNGRILGSKPLNI 364
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN D+ + +F S +G I L+VK+M G+ RG FV+F S E A
Sbjct: 192 VYIKNFGDDMDDERLREVF-STYGRI------LSVKVMTNSCGKSRGFGFVSFDSHEAAR 244
Query: 138 RALNLVNGYVFKGKPMII 155
+A+ +NG G+P+ +
Sbjct: 245 KAVEEMNGKEVNGQPIFV 262
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKHIYV 263
>gi|425770060|gb|EKV08535.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum Pd1]
gi|425771753|gb|EKV10190.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum PHI26]
Length = 188
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 66 PMFKNYAAGNPASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
P K A G P LY NL K+ + + +F S +G++ L V M+
Sbjct: 12 PDSKAIATGAPNQTLYCTNLPDRRIQKNDLRTALYALF-STYGTV------LDVVTMKTV 64
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+MRGQA + F V+ + +AL + G+ F GK M I + +
Sbjct: 65 KMRGQAHIVFKDVQASTQALRALQGFEFFGKQMKIVYAK 103
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + AGN ++IKNL K VI + + SLFG+I + K V + +EG +G
Sbjct: 112 PAMRRSGAGN----IFIKNLDK-VIDNKSIYDTFSLFGNILSCK----VAIDEEGSSKGY 162
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A A+ VNG + GK + +
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + AGN ++IKNL K VI + + SLFG+I + K V + +EG +G
Sbjct: 112 PAMRRSGAGN----IFIKNLDK-VIDNKSIYDTFSLFGNILSCK----VAIDEEGSSKGY 162
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A A+ VNG + GK + +
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>gi|156548050|ref|XP_001606482.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Nasonia vitripennis]
gi|345485456|ref|XP_003425274.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Nasonia vitripennis]
Length = 230
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDIVALKTLKMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM I + +
Sbjct: 58 EIASATNALRSMQGFPFYDKPMRINYSK 85
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|171696206|ref|XP_001913027.1| hypothetical protein [Podospora anserina S mat+]
gi|170948345|emb|CAP60509.1| unnamed protein product [Podospora anserina S mat+]
Length = 191
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +
Sbjct: 14 ALFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQ 66
Query: 139 ALNLVNGYVFKGKPMIIQF 157
A + +NGY F+ + +++ +
Sbjct: 67 ACDKLNGYNFQNRYLVVLY 85
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|335310533|ref|XP_003362077.1| PREDICTED: probable RNA-binding protein 23 [Sus scrofa]
Length = 443
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 267 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 319
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM I
Sbjct: 320 RRALEQLNGFELAGRPMRI 338
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGAITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|422294869|gb|EKU22169.1| U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis
gaditana CCMP526]
Length = 289
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY++NL + + + + F + ID C + +RGQA+V F
Sbjct: 69 PNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVIDIVAC-------RGESLRGQAWVVFD 121
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
SV A AL + G+ F GKPM IQF + + A
Sbjct: 122 SVGSATTALRSLQGFPFLGKPMRIQFAKGKSNA 154
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV 114
K P E+ + M N G+ + LY+ +L ++ D IF FG I+ ++
Sbjct: 135 KSPAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIE------SI 187
Query: 115 KLM---QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+LM + GR +G F+TF E A +AL +NG+ G+PM +
Sbjct: 188 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 231
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 6 KKNPVLQIKITPKASQTE--------DKDDSVAKELEEPNKEDSDVKPFATPEELEMGKL 57
K P L +K+ S T ++ + K +EE N ++ + K + G+
Sbjct: 282 KFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGER 341
Query: 58 PPE-----EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGL 112
E E L Y N LY+KNL D I D+ S FG+I +AK
Sbjct: 342 QTELKRKFEQLKQDRITRYQGVN----LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-- 394
Query: 113 TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+M+ GR +G FV F S E A +A+ +NG + KP+ I
Sbjct: 395 ---MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYI 434
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S + A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPDEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVGSKPLYVALAQ 369
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLRKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 254 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 303
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 304 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGK 151
G FV F + E A+++++ VNG + GK
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGK 167
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 283 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKVYV 171
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + DD S G+I +A+ +K ++ G RG FV + + E A RA
Sbjct: 297 LYVKNL-DDTVTDDVLRDEFSAMGTITSARV---MKDLKTGISRGFGFVCYSTPEDATRA 352
Query: 140 LNLVNGYVFKGKPMII 155
+N +NG + GKP+ +
Sbjct: 353 VNEMNGKIILGKPIFV 368
>gi|320031479|gb|EFW13442.1| hypothetical protein CPSG_09988 [Coccidioides posadasii str.
Silveira]
Length = 382
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 68 FKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAF 127
F Y G ++ +Y++NL +D +F S G ++ A+ ++ GR RG
Sbjct: 271 FATYG-GERSATIYVRNLPWSTCNEDLVELF-STIGKVERAE----IQYEANGRSRGTGV 324
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F +VE A A++ GY + G+P+ + F
Sbjct: 325 VQFDTVENAETAISKFTGYQYGGRPLGLTF 354
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 262 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 311
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 312 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 346
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPM 153
G FV F + E A+++++ VNG + GK +
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGKKL 169
>gi|340518827|gb|EGR49067.1| predicted protein [Trichoderma reesei QM6a]
Length = 493
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 62 ILSLPMFKNYAAGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
+L P N AG S ++Y++NL DD +F ++ G ++ A+ ++ G
Sbjct: 376 VLPNPFTDNATAGTERSEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQYEPSG 430
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
R RG V F S E A A+ GY + G+P+ + F
Sbjct: 431 RSRGTGVVRFDSPETAETAIAKFQGYQYGGRPLNLSF 467
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M+EG
Sbjct: 254 EQLKLERLNRYQGVN----LYVKNL-DDSIDDERLRKEFAPFGTITSAKV-----MMEEG 303
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 304 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGK 151
G FV F + E A+++++ VNG + GK
Sbjct: 140 GYGFVHFETEEAANKSIDRVNGMLLNGK 167
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHR 138
LYIKNL + + + F S FGSI VK+MQE GR +G + F S E A +
Sbjct: 290 LYIKNLDETIDDEKLRREFSS-FGSIS------RVKVMQEEGRSKGFGLICFSSAEEATK 342
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
A+ +NG + KP+ I + P K
Sbjct: 343 AMTEMNGRILGSKPLNIALAQKPXERKT 370
>gi|303310955|ref|XP_003065489.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105151|gb|EER23344.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 439
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 68 FKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAF 127
F Y G ++ +Y++NL +D +F S G ++ A+ ++ GR RG
Sbjct: 328 FATYG-GERSATIYVRNLPWSTCNEDLVELF-STIGKVERAE----IQYEANGRSRGTGV 381
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F +VE A A++ GY + G+P+ + F
Sbjct: 382 VQFDTVENAETAISKFTGYQYGGRPLGLTF 411
>gi|448537900|ref|XP_003871410.1| Gbp2 single-strand telomeric DNA-binding protein [Candida
orthopsilosis Co 90-125]
gi|380355767|emb|CCG25285.1| Gbp2 single-strand telomeric DNA-binding protein [Candida
orthopsilosis]
Length = 452
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P ++++NL DD F +F ++ G + A+ ++ ++GR G A V F VE
Sbjct: 373 PNDTIFVENLPFSTQNDDLFDLFETI-GRVTKAE----IQYQEDGRASGNAVVQFELVES 427
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +LN +NGY + G+ + I + R
Sbjct: 428 ATASLNELNGYEYGGRRLKISYKR 451
>gi|255947342|ref|XP_002564438.1| Pc22g03990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591455|emb|CAP97687.1| Pc22g03990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 500
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 68 FKNYAA--GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G ++V+Y++NL +D +F S G ++ A+ ++ GR RG
Sbjct: 385 FTDYATSNGEKSAVIYVRNLPWSTCNEDLIDLF-STIGKVERAE----IQYEPNGRSRGT 439
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + + A A+ +GY + G+P+ I F
Sbjct: 440 GVVQFDTPDTAETAIAKFSGYQYGGRPLGITF 471
>gi|340923892|gb|EGS18795.1| U2 small nuclear ribonucleoprotein B'-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 201
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 72 AAGNPASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQA 126
AA P LY+ NL K+ + + +F S +GS+ L V ++ +MRGQA
Sbjct: 16 AAIPPNQTLYVTNLPSAKIQKEDLRTALYMLF-STYGSV------LDVVALKTMKMRGQA 68
Query: 127 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ + ++ A A+ ++G+ F G+PM I + +
Sbjct: 69 HIVYKDIQTATMAMRALDGFEFLGRPMKISYAKG 102
>gi|320167853|gb|EFW44752.1| SNF [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P+ LY+ NL K+ + + IF + FG + L + ++ +MRGQAF+ F
Sbjct: 21 PSQTLYVNNLNEKLKKEELRAALYTIF-TQFGPV------LDIVALKTLKMRGQAFIVFH 73
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ + AL + G+ F GKPM I F ++ + A
Sbjct: 74 DITSSANALRSLQGFSFYGKPMRITFAKSRSYA 106
>gi|149756178|ref|XP_001494868.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Equus
caballus]
Length = 446
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 268 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 320
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 321 RRALEQLNGFELAGRPMRV 339
>gi|149756180|ref|XP_001494897.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Equus
caballus]
Length = 430
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 304
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 305 RRALEQLNGFELAGRPMRV 323
>gi|46107306|ref|XP_380712.1| hypothetical protein FG00536.1 [Gibberella zeae PH-1]
Length = 173
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 73 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVTDAKQA 125
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAK 165
+ +NG+ F+ + +++ + + AK
Sbjct: 126 CDKLNGFNFQNRYLVVLYHQPDKMAK 151
>gi|389746772|gb|EIM87951.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 123
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 72 AAGNPAS--------VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR 123
A PAS +L++KNL + +D + +FG +GSI + G E + R
Sbjct: 2 ATARPASKLPPGANRILFVKNLNYQITGEDLYDLFGR-YGSIRQIRMG------NEQKTR 54
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
G AFV F V A AL+ +NG+ + + +++ +
Sbjct: 55 GTAFVVFDDVMDAKNALDHLNGFHLQERYIVVLY 88
>gi|254582212|ref|XP_002497091.1| ZYRO0D15224p [Zygosaccharomyces rouxii]
gi|238939983|emb|CAR28158.1| ZYRO0D15224p [Zygosaccharomyces rouxii]
Length = 86
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 80 LYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRM-RGQAFVTFPSVE 134
LY+ NL+ + + + + +F + CG VK+ R RGQAFVT +V+
Sbjct: 5 LYVHNLSDGIGSQRLREQLYLLF---------STCGEVVKVSVNVRKNRGQAFVTMKTVD 55
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRNPA 162
++ A+ L+NG F G+ + ++FG+
Sbjct: 56 ESNLAVGLLNGETFMGRTLSVEFGKQET 83
>gi|149756182|ref|XP_001494921.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Equus
caballus]
Length = 412
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 234 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 286
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 287 RRALEQLNGFELAGRPMRV 305
>gi|378726083|gb|EHY52542.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 200
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 73 AGNPASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
AG P LY+KNL + + ++ + +F + +D + K MRGQA +
Sbjct: 18 AGTPNQTLYVKNLNEKINKNELKRALYMLFSTYGPVLDIVTTRVGSKCQN---MRGQAHI 74
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ ++ + +A+ + G+ GK M+I +G+
Sbjct: 75 VYRDIQTSTQAMRALQGFDLFGKEMVIVYGK 105
>gi|410909846|ref|XP_003968401.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Takifugu rubripes]
Length = 273
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +M+GQAFV F V
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVARTMKMKGQAFVIFKEVN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIQYAK 88
>gi|342321005|gb|EGU12943.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 77 ASVLYIKNLAK----DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
+ VLY+ NL + D++ +F +G + L V + RMRGQAFVT S
Sbjct: 55 SEVLYVNNLNEKIKLDIMKQSLKVLFRE-YGRV------LGVTAHRNVRMRGQAFVTLDS 107
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
E A +A+ V + GKPM + F R + A
Sbjct: 108 KEAAVKAVKEVQKFPLYGKPMQLTFARTESDA 139
>gi|260834973|ref|XP_002612484.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
gi|229297861|gb|EEN68493.1| hypothetical protein BRAFLDRAFT_214383 [Branchiostoma floridae]
Length = 466
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 57 LPPEEILSLPMF-------KNYAAGNPASV---------LYIKNLAKDVIPDDFFFIFGS 100
L +++L +P+ KN AA N ++ LY+ +L ++ D IF
Sbjct: 107 LTNQKLLGVPIIVQASQAEKNRAAANSQNLQKGSSGPMRLYVGSLHFNITEDMLRGIF-E 165
Query: 101 LFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FG ID ++LM++ GR +G F+TF E A +AL +NG+ G+PM +
Sbjct: 166 PFGKID------NIQLMKDSETGRSKGYGFITFHDAECAKKALEQLNGFELAGRPMKV 217
>gi|432890232|ref|XP_004075429.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Oryzias latipes]
gi|432890234|ref|XP_004075430.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Oryzias latipes]
Length = 272
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +M+GQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVARTLKMKGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 61 EINSASNALRSMQGFPFYDKPMRIQYSKT 89
>gi|440798125|gb|ELR19193.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 1683
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ------EGRMRGQAFVTFP 131
+ LYIKNLA + +D +++ +C +K ++ +G G+AFV +
Sbjct: 363 TTLYIKNLAYQITDEDLKI-------KLESHECKEGLKAIRWITDKMQGHFTGEAFVEYE 415
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
S ELA RAL+ + G G+ M I + ++
Sbjct: 416 SAELAARALDKLKGRRMLGRRMKISYAKS 444
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLQKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|340923936|gb|EGS18839.1| hypothetical protein CTHT_0054490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 115
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKTA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|325183684|emb|CCA18143.1| eukaryotic translation initiation factor 3 subunit G putative
[Albugo laibachii Nc14]
Length = 317
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
++YA + L + N++ D DD + +F +FG + + MQ RG AFV
Sbjct: 200 ESYAEDTENATLRVTNISPDTCEDDLYELF-RVFGHVLRVYLARDRETMQS---RGFAFV 255
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+F + A RALN + GY + + +++ R
Sbjct: 256 SFARADDAERALNKLQGYGYDHLILKLEWAR 286
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN++ + DDF +F +G + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNISPEATEDDFRQLF-EQYGDVTSS----SLARDQEGKSRGFGFVNFTTHESAAKA 297
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>gi|301781268|ref|XP_002926045.1| PREDICTED: probable RNA-binding protein 23-like isoform 1
[Ailuropoda melanoleuca]
Length = 446
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 267 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 319
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 320 RRALEQLNGFELAGRPMRV 338
>gi|383419607|gb|AFH33017.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 258 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 309
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRV 336
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D+ + F S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNLDDDIDDERLQKAF-SPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+A +V D+F +F + FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 217 VYVKNIANEVTDDEFRDLFAA-FGDVTSS----SLARDQEGKSRGFGFVNFTTHEAAAKA 271
Query: 140 LNLVNGYVFKGKPMII 155
+ +N F+G+ + +
Sbjct: 272 VEDLNNKDFRGQDLYV 287
>gi|410961880|ref|XP_003987506.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Felis catus]
Length = 445
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 259 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 310
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 311 TFSDSECARRALEQLNGFELAGRPMRV 337
>gi|387539272|gb|AFJ70263.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 439
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 258 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 309
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRV 336
>gi|355693134|gb|EHH27737.1| hypothetical protein EGK_18008 [Macaca mulatta]
Length = 441
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 258 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 309
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRV 336
>gi|332222976|ref|XP_003260645.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Nomascus
leucogenys]
Length = 442
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 258 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 309
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRV 336
>gi|46136649|ref|XP_390016.1| hypothetical protein FG09840.1 [Gibberella zeae PH-1]
Length = 591
Score = 45.8 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 58 PPEEILSLPMFKNYAAG--NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
PP + F +YA + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 370 PPASSVPPNPFTDYATAGSDRGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQ 424
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 425 YEPSGRSRGTGVVRFDSAETAETAITKFQGYQYGGRPLNLSF 466
>gi|22299055|ref|NP_682302.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22295237|dbj|BAC09064.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 193
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+ NL +D+ ++ +F G + K + + G+ RG FVT S E+A +
Sbjct: 39 LYVGNLPRDLSREELEALFNQEVGEVGTTKL---ITDRKTGKCRGFGFVTVESEEVADQV 95
Query: 140 LNLVNGYVFKGKPMIIQ 156
+ +NGY FK P+ I+
Sbjct: 96 IEKLNGYTFKDNPLKIE 112
>gi|410909848|ref|XP_003968402.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Takifugu rubripes]
Length = 279
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +M+GQAFV F V
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVARTMKMKGQAFVIFKEVN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIQYAK 88
>gi|387539270|gb|AFJ70262.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 423
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 242 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 293
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRV 320
>gi|258574487|ref|XP_002541425.1| pre-mRNA branch site protein p14 [Uncinocarpus reesii 1704]
gi|237901691|gb|EEP76092.1| pre-mRNA branch site protein p14 [Uncinocarpus reesii 1704]
Length = 115
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL+ +V D+ F +FG FG I + G+ +G AFV + V A +
Sbjct: 14 ILFVKNLSYNVTADELFDLFGK-FGPIRQIRQGIA------ANSKGTAFVVYEDVHDAKQ 66
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
A + +NG+ F+ + +++ + + AK
Sbjct: 67 ACDKLNGFNFQNRYLVVLYHQPEKMAKS 94
>gi|119586631|gb|EAW66227.1| RNA binding motif protein 23, isoform CRA_f [Homo sapiens]
Length = 269
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 81 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 133
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 134 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 166
>gi|225554392|gb|EEH02691.1| RNA binding domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 190
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDIVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I + +
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYAK 95
>gi|221044666|dbj|BAH14010.1| unnamed protein product [Homo sapiens]
Length = 270
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 81 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 133
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 134 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 166
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 170 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 223
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 224 VTEMNGRIVATKPLYV 239
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 67 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 119
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 120 KAVDEMNGKELNGKQIYV 137
>gi|425772063|gb|EKV10488.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
Pd1]
gi|425777240|gb|EKV15421.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
PHI26]
Length = 249
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P + +Y+KNL + + D +F G+I L V + +GQAF+ F +
Sbjct: 11 PNATVYVKNLDERIKIDQLKHALEEIFSEYGTI------LEVVAKTNLKAKGQAFIVFDN 64
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V+ A RA+ +NG+ KPM++ + + P+ A
Sbjct: 65 VDSATRAIEDINGFDLFEKPMVLDYAKTPSDA 96
>gi|408399464|gb|EKJ78565.1| hypothetical protein FPSE_01231 [Fusarium pseudograminearum CS3096]
Length = 173
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 73 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVTDAKQA 125
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAK 165
+ +NG+ F+ + +++ + + AK
Sbjct: 126 CDKLNGFNFQNRYLVVLYHQPDKMAK 151
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L + Y N LY+KNL D I D+ S FG+I +AK +M++
Sbjct: 283 EALKMERLNRYQGVN----LYVKNL-DDTIDDERLRKEFSPFGTITSAKV-----MMEDN 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F S E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 367
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL + + + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDRSIDNKAMYDTF-SAFGNI------LSCKVAQDENGTSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|347829902|emb|CCD45599.1| hypothetical protein [Botryotinia fuckeliana]
Length = 201
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 76 PASVLYIKNL-AKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL + + DD + S +G + L V ++ +MRGQA V +
Sbjct: 16 PNQTIYITNLPSSKIQKDDLRRELYTLCSTYGPV------LDVIALKSMKMRGQAHVVYR 69
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ + G+ F G+ M IQ+ ++
Sbjct: 70 DIQTATQAMRALQGFEFLGREMNIQYAKS 98
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 25 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 78
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 79 VTEMNGRIVATKPLYV 94
>gi|388490330|ref|NP_001253303.1| probable RNA-binding protein 23 [Macaca mulatta]
gi|380814244|gb|AFE78996.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
gi|384947950|gb|AFI37580.1| putative RNA-binding protein 23 isoform 1 [Macaca mulatta]
Length = 441
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 258 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 309
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRV 336
>gi|301781270|ref|XP_002926046.1| PREDICTED: probable RNA-binding protein 23-like isoform 2
[Ailuropoda melanoleuca]
Length = 430
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 251 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 303
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 304 RRALEQLNGFELAGRPMRV 322
>gi|154278922|ref|XP_001540274.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412217|gb|EDN07604.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 190
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L + M+ +MRGQA V F +
Sbjct: 13 GAPNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDIVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I + +
Sbjct: 70 QASTQAMRALQGFEFFGKEMKIVYAK 95
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFEKHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELSGKQIYV 263
>gi|322699127|gb|EFY90891.1| pre-mRNA branch site protein p14 [Metarhizium acridum CQMa 102]
Length = 177
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
L++KNL+ V P++ F +FG FG I + G++ +G AFV + V A +
Sbjct: 15 ALFVKNLSYSVTPEELFDLFGK-FGPIRQVRQGISTS------TKGTAFVVYEDVMDAKQ 67
Query: 139 ALNLVNGYVFKGKPMIIQF 157
A + +NG+ F+ + +++ +
Sbjct: 68 ACDKLNGFNFQNRYLVVLY 86
>gi|225707030|gb|ACO09361.1| U2 small nuclear ribonucleoprotein B [Osmerus mordax]
Length = 219
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKN----LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI N + KD + + +F S FG I + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNVNDKIKKDELKRSLYALF-SQFGQI------VDIVAMKTIKMRGQAFVVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + AL + G+ F KPM IQ+ +
Sbjct: 58 ELAASTNALRQLQGFPFYNKPMRIQYAK 85
>gi|70947892|ref|XP_743519.1| u1 small nuclear ribonucleoprotein a [Plasmodium chabaudi chabaudi]
gi|56523052|emb|CAH75488.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium chabaudi
chabaudi]
Length = 444
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGL--TVKLMQEGRMRGQAFVTFPSV 133
P LY+KNL + +D ++F + GL + +M+ +GQA++ + ++
Sbjct: 161 PNETLYVKNLNDKIKCEDMKKSLKNIFN-----QYGLIEDIIVMKSFWRKGQAWIVYDTI 215
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
E + +ALN + G+V GK M I + N +
Sbjct: 216 ESSTKALNALQGFVLFGKIMQINYSHNKS 244
>gi|384947948|gb|AFI37579.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 242 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 293
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRV 320
>gi|380814242|gb|AFE78995.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
gi|383419605|gb|AFH33016.1| putative RNA-binding protein 23 isoform 2 [Macaca mulatta]
Length = 425
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 242 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 293
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRV 320
>gi|444728803|gb|ELW69245.1| putative RNA-binding protein 23 [Tupaia chinensis]
Length = 450
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 246 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 297
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 298 TFSDSECARRALEQLNGFELAGRPMRV 324
>gi|380096344|emb|CCC06392.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 115
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|332222974|ref|XP_003260644.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Nomascus
leucogenys]
Length = 426
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 242 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 293
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRV 320
>gi|164427672|ref|XP_964127.2| hypothetical protein NCU02837 [Neurospora crassa OR74A]
gi|157071838|gb|EAA34891.2| conserved hypothetical protein [Neurospora crassa OR74A]
gi|336463638|gb|EGO51878.1| hypothetical protein NEUTE1DRAFT_89652 [Neurospora tetrasperma FGSC
2508]
gi|350294965|gb|EGZ76029.1| hypothetical protein NEUTE2DRAFT_97428 [Neurospora tetrasperma FGSC
2509]
Length = 115
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|115389920|ref|XP_001212465.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194861|gb|EAU36561.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 468
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 54 MGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLT 113
M +PP + G + ++Y++NL +D +F S G ++ A+
Sbjct: 338 MASVPPNSFTDFAT----SGGEKSPIIYVRNLPWSTCNEDLVDLF-STIGKVERAE---- 388
Query: 114 VKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
++ GR RG V F + E A A+ GY + G+P+ I F
Sbjct: 389 IQYEPNGRSRGTGVVQFDNAETAETAIAKFTGYQYGGRPLGITF 432
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG V KP+ + +
Sbjct: 350 VTEMNGRVVATKPLYVALAQ 369
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|440640405|gb|ELR10324.1| pre-mRNA branch site protein p14 [Geomyces destructans 20631-21]
Length = 114
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV F V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVFEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 68 CDKLNGFNFQSRYLVVLY 85
>gi|73962357|ref|XP_537365.2| PREDICTED: probable RNA-binding protein 23 isoform 1 [Canis lupus
familiaris]
Length = 445
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 266 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 318
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 319 RRALEQLNGFELAGRPMRV 337
>gi|197102126|ref|NP_001124751.1| probable RNA-binding protein 23 [Pongo abelii]
gi|55725769|emb|CAH89665.1| hypothetical protein [Pongo abelii]
Length = 423
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 242 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 293
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 294 TFSDSECARRALEQLNGFELAGRPMRV 320
>gi|47211375|emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI N+ V ++ + S FG I + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNINDKVKKEELKRSLYALLSQFGQI------VDIVAMKTMKMRGQAFVIFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LTAATNALRQLQGFPFYNKPMRIQYAKT 86
>gi|367052823|ref|XP_003656790.1| hypothetical protein THITE_2171338 [Thielavia terrestris NRRL 8126]
gi|347004055|gb|AEO70454.1| hypothetical protein THITE_2171338 [Thielavia terrestris NRRL 8126]
Length = 115
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|325182719|emb|CCA17174.1| U1 small nuclear ribonucleoprotein A putative [Albugo laibachii
Nc14]
Length = 234
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LYI NL + PD + SL+ S L + + + +RGQA++TF V
Sbjct: 25 PIHTLYIHNLNDKIKPDR---LKQSLYASFSQFGKVLEIAIFKARFLRGQAWITFDDVPS 81
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
A AL +N K MI+QF + +
Sbjct: 82 ASNALRSMNNTTIFDKNMIVQFAKQES 108
>gi|407915850|gb|EKG09360.1| hypothetical protein MPH_13626 [Macrophomina phaseolina MS6]
Length = 218
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 68 FKNYA--AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA G ++++Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 105 FTDYATSGGERSNIIYVRNLPWSTSNEDLVELFTTI-GKVERAE----IQYEPNGRSRGT 159
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + E A A++ GY + G+P+ + F
Sbjct: 160 GVVEFDTAENAETAISKFTGYQYGGRPLGLSF 191
>gi|402220077|gb|EJU00150.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 276
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +Y++NL + V + +LF + L V RMRGQAFV+F E
Sbjct: 51 PCETVYVQNLNESVTMNTLKQTLTNLFKNYGEV---LDVVAHHNLRMRGQAFVSFADPEA 107
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
A +A+ V+ + GKPM + F + + A
Sbjct: 108 AAKAVKEVDRFPLYGKPMKLSFAKTRSDA 136
>gi|345567447|gb|EGX50379.1| hypothetical protein AOL_s00076g143 [Arthrobotrys oligospora ATCC
24927]
Length = 195
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LYI NL + D +LF + L V ++ +MRGQA V F +
Sbjct: 24 PNQTLYISNLNDKIHKPDLKIALYTLFSTYGVV---LDVIALKTAKMRGQAHVAFRDIAG 80
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
A A+ G V GK M IQ+ R+ +
Sbjct: 81 ASSAMRGCQGMVIFGKEMKIQYARSKS 107
>gi|409049784|gb|EKM59261.1| hypothetical protein PHACADRAFT_205445 [Phanerochaete carnosa
HHB-10118-sp]
Length = 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRVG------SEQKTRGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|408396032|gb|EKJ75200.1| hypothetical protein FPSE_04591 [Fusarium pseudograminearum CS3096]
Length = 202
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 76 PASVLYIKNL-AKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY+ NL + + DD ++ S +G + L V ++ +MRGQA +TF
Sbjct: 26 PNQTLYVTNLPSSKIQKDDLRTALYLLFSTYGPV------LDVVALKTMKMRGQAHITFR 79
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V+ A +A+ + G F G+ + IQ+ ++
Sbjct: 80 DVQSATQAMRSLEGQSFLGRDLKIQYAKS 108
>gi|384493186|gb|EIE83677.1| hypothetical protein RO3G_08382 [Rhizopus delemar RA 99-880]
Length = 413
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL ++ D +F FG I +A+ G+ +G FV+F E A A
Sbjct: 30 LYIKNLDPNITNADLNHLFRK-FGRIVSARVMTNAAT---GQSKGYGFVSFGKSEEAAAA 85
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
L +NGY+ +P+I+ + P K N
Sbjct: 86 LKEMNGYIVNDRPLIVAY-HEPKKGKTN 112
>gi|402217410|gb|EJT97490.1| RNA-binding domain-containing protein, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 176
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P + LYI NL + ++ +LF G + + V + +M+GQAFV F
Sbjct: 5 PNTCLYINNLNDKINKEELRAQLYALFTPYGKV------IDVVARKGTKMKGQAFVVFGD 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A A+ ++G F KPM IQ+GR + A
Sbjct: 59 LAGATTAMRAMDGEFFYDKPMHIQYGRTKSHA 90
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 92 LYVKNL-DDGIDDEHLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 145
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG KP+ + +
Sbjct: 146 VKEMNGRTVATKPLYVALAQ 165
>gi|301781272|ref|XP_002926047.1| PREDICTED: probable RNA-binding protein 23-like isoform 3
[Ailuropoda melanoleuca]
Length = 412
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 233 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 285
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 286 RRALEQLNGFELAGRPMRV 304
>gi|407860731|gb|EKG07463.1| hypothetical protein TCSYLVIO_001404 [Trypanosoma cruzi]
Length = 601
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S L++ L V ++ + F LFG I++AK L + G+ RG AFV F V A
Sbjct: 237 SNLFVSGLHASVTDNELYKHF-HLFGEIESAKVMLDI---HTGKSRGIAFVKFKEVANAE 292
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
+A +N VF G+ + ++ + AA +P
Sbjct: 293 KAAEEMNNSVFHGETIAVRVAKPHAAYRP 321
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNLA +V D +F S G+I + K V G+ +G FV F S + A RA
Sbjct: 306 LYVKNLADEVDDDALRDLFTSC-GTITSCK----VMKDTSGKSKGFGFVCFTSHDEATRA 360
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KGKP+ + +
Sbjct: 361 VTEMNGKMVKGKPLYVALAQ 380
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV-- 133
S LY+ +L KDV F +F S+ SI + +T + + G A+V + S
Sbjct: 21 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSL------GYAYVNYNSALD 74
Query: 134 -ELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
+ A RA+ +N +V GKPM I + R+P+A K
Sbjct: 75 PQAAERAMETLNYHVLNGKPMRIMWSHRDPSARK 108
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 13 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 66
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 67 VTEMNGRIVATKPLYV 82
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FGSI +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGSITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|410961882|ref|XP_003987507.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Felis catus]
Length = 429
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 243 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 294
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 295 TFSDSECARRALEQLNGFELAGRPMRV 321
>gi|345804022|ref|XP_003435135.1| PREDICTED: probable RNA-binding protein 23 [Canis lupus familiaris]
Length = 411
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 232 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 284
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 285 RRALEQLNGFELAGRPMRV 303
>gi|73962355|ref|XP_848788.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Canis lupus
familiaris]
Length = 429
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 250 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 302
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 303 RRALEQLNGFELAGRPMRV 321
>gi|371874989|ref|NP_001243119.1| U2 small nuclear ribonucleoprotein B'' [Danio rerio]
Length = 220
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKN----LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI N + K+ + + +F S FG I + + ++ RMRGQAFV F
Sbjct: 5 PNHTIYINNVNDKIKKEELKRSLYALF-SQFGQI------MDIVALKTMRMRGQAFVIFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQ+ +
Sbjct: 58 ELSAATNALRQLQGFPFYNKPMRIQYAK 85
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|410961884|ref|XP_003987508.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Felis catus]
Length = 411
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 225 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 276
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 277 TFSDSECARRALEQLNGFELAGRPMRV 303
>gi|326428976|gb|EGD74546.1| hypothetical protein PTSG_05910 [Salpingoeca sp. ATCC 50818]
Length = 215
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY+ NL K+ + +F+F S FG I L V ++ +MRGQAF+ F
Sbjct: 5 PNQTLYVNNLNDKIHKEELRRSLYFLF-SQFGPI------LDVVALKTPKMRGQAFIAFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A A+ + + GKPM I + ++ + A
Sbjct: 58 DITCATNAMRALQSFNLFGKPMKIAYAKSKSIA 90
>gi|242208894|ref|XP_002470296.1| predicted protein [Postia placenta Mad-698-R]
gi|220730603|gb|EED84457.1| predicted protein [Postia placenta Mad-698-R]
Length = 123
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRIG------NEQKTRGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|212545797|ref|XP_002153052.1| nucleic acid-binding protein [Talaromyces marneffei ATCC 18224]
gi|210064572|gb|EEA18667.1| nucleic acid-binding protein [Talaromyces marneffei ATCC 18224]
Length = 308
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+P+ +YI NL D+ +D S FG ++ A + G +G +VTF SVE
Sbjct: 107 DPSPTIYIGNLFFDITAEDLKSKMES-FGVVEKAAIISDAR----GLSKGFGYVTFDSVE 161
Query: 135 LAHRALNLVNGYVFKGKPMIIQF 157
A RA+ +N V++G+ +++QF
Sbjct: 162 AAQRAIEEMNQQVYEGRRVLVQF 184
>gi|116181616|ref|XP_001220657.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88185733|gb|EAQ93201.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+V+LM + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVELMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD I S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG V KP+ +
Sbjct: 344 VTELNGRVVGSKPLYV 359
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|410917616|ref|XP_003972282.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Takifugu rubripes]
Length = 246
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI N+ V ++ + S FG I + + M+ +MRGQAFV F
Sbjct: 32 PNHTIYINNINDKVKKEELKRSLYALLSQFGQI------VDIVAMKTMKMRGQAFVIFKE 85
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 86 LTAATNALRQLQGFPFYNKPMRIQYAKT 113
>gi|402086724|gb|EJT81622.1| pre-mRNA branch site protein p14 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 115
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKTA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|317037176|ref|XP_001398705.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus niger CBS
513.88]
Length = 251
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMR--GQAFVTFPSV 133
P +Y++NL + + D +F ++ G ++++ + ++ GQAFV F +V
Sbjct: 12 PNCTVYVRNLEERIKVDQLKEALEEIF-----SEYGTVLEIVAKTNLKAKGQAFVVFDTV 66
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRN 160
E A RA++ +NG+ KPM++ + +
Sbjct: 67 EAATRAIDEINGFELFDKPMVLDYAKT 93
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 6 KKNPVLQIKITPKASQTE--------DKDDSVAKELEEPNKEDSDVKPFATPEELEMGKL 57
K P L +K+ S T ++ + K +EE N ++ + K + G+
Sbjct: 213 KFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGER 272
Query: 58 PPE-----EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGL 112
E E L Y N LY+KNL D I D+ S FG+I +AK
Sbjct: 273 QTELKRKFEQLKQDRITRYQGVN----LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-- 325
Query: 113 TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+M+ GR +G FV F S E A +A+ +NG + KP+ I
Sbjct: 326 ---MMEGGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYI 365
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|82596021|ref|XP_726090.1| U1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii
17XNL]
gi|23481350|gb|EAA17655.1| u1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii]
Length = 508
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLT--VKLMQEGRMRGQAFVTFPSV 133
P LYIKNL + +D ++F + GL + +M+ +GQA++ + ++
Sbjct: 185 PNETLYIKNLNDKIKCEDMKKSLKNIFN-----QYGLIEDIIVMKSFWRKGQAWIVYDTI 239
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
E + +ALN + G+V GK M I + N +
Sbjct: 240 ESSTKALNALQGFVLFGKIMQINYSHNKS 268
>gi|317028095|ref|XP_001400564.2| pre-mRNA branch site p14-like protein [Aspergillus niger CBS
513.88]
Length = 122
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 62 ILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR 121
ILS P A +L++KNL +V + F +FG FG I + G+
Sbjct: 4 ILSHPRMSRKLAPEANRILFVKNLNYNVTAEQLFDLFGK-FGPIRQIRQGIA------NN 56
Query: 122 MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
+G AFV + V A +A + +NG+ F+ + +++ +
Sbjct: 57 SKGTAFVVYEDVHDAKQACDKLNGFNFQNRYLVVLY 92
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 316 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 369
Query: 140 LNLVNGYVFKGKPMIIQFGRN 160
+ +NG + KP+ + +
Sbjct: 370 VTEMNGRIVATKPLYVALAQR 390
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 213 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 266 KAVDEMNGKELNGKQIYV 283
>gi|320589234|gb|EFX01696.1| pre-mRNA branch site protein [Grosmannia clavigera kw1407]
Length = 178
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFELFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAK 165
+ +NGY F+ + +++ + + AK
Sbjct: 68 CDKLNGYNFQNRYLVVLYHQPEKMAK 93
>gi|307110924|gb|EFN59159.1| hypothetical protein CHLNCDRAFT_50008 [Chlorella variabilis]
Length = 236
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 75 NPASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
N +Y+ NL + V DD IFG FG I L V + R+RGQA+V F
Sbjct: 19 NEGHTVYVNNLPEKVSQDDLKKAMHCIFGQ-FGKI------LDVVSRRTYRLRGQAWVVF 71
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
E A AL+ + G+ F KP+ I + + A
Sbjct: 72 EKAEDAKNALDCMQGFPFLDKPLRIALAKTKSDA 105
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 318 VTEMNGRIVATKPLYV 333
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 161 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 214 KAVDEMNGKELNGKQIYV 231
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 232 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 285
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 286 VTEMNGRIVATKPLYV 301
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 129 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 181
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 182 KAVDEMNGKELNGKQIYV 199
>gi|367019080|ref|XP_003658825.1| hypothetical protein MYCTH_105822 [Myceliophthora thermophila ATCC
42464]
gi|347006092|gb|AEO53580.1| hypothetical protein MYCTH_105822 [Myceliophthora thermophila ATCC
42464]
Length = 115
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG +G I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-YGPIRQVRQGIA------SNTKGTAFVVYEDVLDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NGY F+ + +++ +
Sbjct: 68 CDKLNGYNFQNRYLVVLY 85
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD I S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG V KP+ +
Sbjct: 344 VTELNGRVVGSKPLYV 359
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 463 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 516
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 517 VTEMNGRIVATKPLYV 532
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 360 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 412
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 413 KAVDEMNGKELNGKQIYV 430
>gi|367018898|ref|XP_003658734.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
gi|347006001|gb|AEO53489.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
Length = 200
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P LY+ NL K+ + + +F S +GS+ L V ++ +MRGQA + +
Sbjct: 19 PNQTLYVTNLPSAKIQKEDLRTALYMLF-STYGSV------LDVVALKTMKMRGQAHIVY 71
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ +NG+ F G+ M I + ++
Sbjct: 72 KDIQTATQAMRALNGFEFFGREMKISYAKS 101
>gi|296214508|ref|XP_002753659.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Callithrix
jacchus]
Length = 439
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 264 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 316
Query: 137 HRALNLVNGYVFKGKPMII 155
RA++ +NG+ G+PM +
Sbjct: 317 RRAMDQLNGFELAGRPMRV 335
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|45184845|ref|NP_982563.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|44980454|gb|AAS50387.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|374105762|gb|AEY94673.1| FAAR022Wp [Ashbya gossypii FDAG1]
Length = 114
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 74 GNPASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
G P S LYI NL V + + + +F S FG + +++ ++RGQAFV
Sbjct: 28 GMPRSTLYISNLNDQVKISTLRTNLYLLF-STFGEV--------LRIAMSPKLRGQAFVV 78
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+V+ A+ A+ + F GKP+ IQF ++
Sbjct: 79 LSTVDEANLAMISLKDESFFGKPLRIQFSKS 109
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM---QEGRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID +++LM + GR +G F+TF E A
Sbjct: 248 LYVGSLHFNITEDMLRGIF-EPFGRID------SIQLMMDSETGRSKGYGFITFSDAECA 300
Query: 137 HRALNLVNGYVFKGKPMII 155
+AL +NG+ G+PM +
Sbjct: 301 KKALEQLNGFELAGRPMKV 319
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 232 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 285
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 286 VTEMNGRIVATKPLYV 301
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 129 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 181
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 182 KAVDEMNGKELNGKQIYV 199
>gi|159164266|pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFP 131
+ +S LY+ +L ++ D IF FG ID + LM++ GR +G F+TF
Sbjct: 3 SGSSGLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFS 55
Query: 132 SVELAHRALNLVNGYVFKGKPMII 155
E A RAL +NG+ G+PM +
Sbjct: 56 DSECARRALEQLNGFELAGRPMRV 79
>gi|344234704|gb|EGV66572.1| hypothetical protein CANTEDRAFT_117619 [Candida tenuis ATCC 10573]
Length = 472
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
A G + +Y++NL DD + +F ++ G + A+ ++ GR G A V F
Sbjct: 342 ADGLKSDTIYVENLPYVTTVDDLYELFETI-GKVTRAE----IQYAPHGRASGNAVVRFE 396
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
S ELA ++ +N Y + G+ + I + P +A
Sbjct: 397 SDELAELSIANLNSYNYGGRDLKISYANKPGSA 429
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 187 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 240
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 241 VTEMNGRIVATKPLYV 256
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 84 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 136
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 137 KAVDEMNGKELNGKQIYV 154
>gi|405123760|gb|AFR98523.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 284
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 75 NPASVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
N LY++NL + V IP + +L+ + + RMRGQAFV+FP +
Sbjct: 56 NACETLYLQNLNEKVRIP----VMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFPDI 111
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
E A+ A VN + GK + IQF +
Sbjct: 112 ESANEARKDVNEFPLYGKSIQIQFAK 137
>gi|355778434|gb|EHH63470.1| hypothetical protein EGM_16442, partial [Macaca fascicularis]
Length = 366
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 183 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFI 234
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 235 TFSDSECARRALEQLNGFELAGRPMRV 261
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 225 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 278
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 279 VTEMNGRIVATKPLYV 294
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 122 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 174
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 175 KAVDEMNGKELNGKQIYV 192
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 237 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 290
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 291 VTEMNGRIVATKPLYV 306
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 134 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 186
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 187 KAVDEMNGKELNGKQIYV 204
>gi|393215680|gb|EJD01171.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 268
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P LY+ NL + D+ F F + +G + + + ++ RM+GQAFV F
Sbjct: 7 PNPTLYVNNLNDKINKDELKKQLFSFFTTYGRV------IDIIAIKSARMKGQAFVVFAD 60
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A A+ G +F KP+ I + ++ + A
Sbjct: 61 LPEATTAMRACEGMIFYDKPLHIHYAKSKSYA 92
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 225 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 278
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 279 VTEMNGRIVATKPLYV 294
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 122 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 174
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 175 KAVDEMNGKELNGKQIYV 192
>gi|242786438|ref|XP_002480805.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720952|gb|EED20371.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
Length = 180
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 74 GNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
G P LYIKNL + D ++ S +G + L V +M+ +MRGQA + +
Sbjct: 19 GAPNQTLYIKNLPDKIRKPDLRMALYMLFSTYGPV------LDVVVMRTAKMRGQAHIVY 72
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
++ + +A+ + G+ F G+ + I + + +
Sbjct: 73 RDIQASTQAMRALQGFDFFGRELAIVYAKGSS 104
>gi|295314954|gb|ADF97627.1| small nuclear ribonucleoprotein polypeptide A [Hypophthalmichthys
molitrix]
Length = 281
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I T+K MRGQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSPTLK------MRGQAFVIFKEIN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIQYAK 88
>gi|68074359|ref|XP_679094.1| u1 small nuclear ribonucleoprotein a [Plasmodium berghei strain
ANKA]
gi|56499751|emb|CAH97936.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium berghei]
Length = 371
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLT--VKLMQEGRMRGQAFVTFPSV 133
P LYIKNL + +D ++F + GL + +M+ +GQA++ + ++
Sbjct: 88 PNETLYIKNLNDKIKCEDMKKSLKNIFN-----QYGLIEDIIVMKSFWRKGQAWIVYDTI 142
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
E + +ALN + G+V GK M I + N +
Sbjct: 143 ESSTKALNSLQGFVLFGKIMQINYSHNKS 171
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 347 VTEMNGRIVATKPLYVALAQ 366
>gi|408390063|gb|EKJ69476.1| hypothetical protein FPSE_10356 [Fusarium pseudograminearum CS3096]
Length = 564
Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 58 PPEEILSLPMFKNYAAG--NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
PP + F +YA + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 442 PPASSVPPNPFTDYATAGSDRGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQ 496
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
GR RG V F S E A A+ GY + G+P+ + F
Sbjct: 497 YEPSGRSRGTGVVRFDSAETAETAITKFQGYQYGGRPLNLSF 538
>gi|327276255|ref|XP_003222885.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Anolis
carolinensis]
Length = 280
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI NL + + D F L ++ + L + + +MRGQAFV F V
Sbjct: 8 PNHTIYINNLNEKIKKDGKFISVSML---LNPSGQILDILVSHSMKMRGQAFVIFKEVSS 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F KPM IQ+ +
Sbjct: 65 STNALRSMQGFPFYDKPMRIQYAK 88
>gi|223649102|gb|ACN11309.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKN----LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI N + KD + + +F S FG + + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNVNDKIKKDELKRSLYALF-SQFGQV------MDIVAMKTMKMRGQAFVVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + AL + G+ F KPM IQ+ +
Sbjct: 58 ELASSTNALRQLQGFPFYNKPMRIQYAK 85
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 347 VTEMNGRIVATKPLYVALAQ 366
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 347 VTEMNGRIVATKPLYVALAQ 366
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 259 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 312
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 313 VTEMNGRIVATKPLYV 328
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 156 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 208
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 209 KAVDEMNGKELNGKQIYV 226
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|189091838|ref|XP_001929752.1| hypothetical protein [Podospora anserina S mat+]
gi|188219272|emb|CAP49252.1| unnamed protein product [Podospora anserina S mat+]
Length = 488
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 66 PMFKNYAAGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRG 124
P N AG + ++Y++NL DD +F S G ++ A+ ++ GR RG
Sbjct: 376 PFTDNATAGTEKNEIIYVRNLPWSTSNDDLVELF-STIGKVEQAE----IQYEPSGRSRG 430
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + + A A+N GY + G+P+ + +
Sbjct: 431 SGVVRFDNADTAETAINKFQGYQYGGRPLGLSY 463
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 316 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 369
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 370 VTEMNGRIVATKPLYV 385
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 213 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 265
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 266 KAVDEMNGKELNGKQIYV 283
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|242763791|ref|XP_002340645.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723841|gb|EED23258.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 254
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLF---GSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P + Y+ NL + V D+ ++F G+I L + + + +GQAF+ F +
Sbjct: 12 PPNPTYVHNLEERVKIDELKEALTAIFSEYGTI------LEIVAKKNLKAKGQAFIVFDN 65
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
VE A RA+ VNG+ GKPM + F + + A
Sbjct: 66 VESAQRAIEEVNGFDLLGKPMHLDFAKTRSDA 97
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 311 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 364
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 365 VTEMNGRIVATKPLYV 380
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 208 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 260
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 261 KAVDEMNGKELNGKQIYV 278
>gi|320588360|gb|EFX00829.1| rnp domain containing protein [Grosmannia clavigera kw1407]
Length = 363
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 66 PMFKNYAAGN-PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRG 124
P + +GN P+ +++++NL +D +FG++ G ++ A+ ++ GR RG
Sbjct: 249 PFTDHATSGNEPSEIIFVRNLPWSTSNEDLVELFGTI-GKVEQAE----IQYEPSGRSRG 303
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F + E A A++ GY + G+P+ + F
Sbjct: 304 SGVVRFDNPETADTAISKFQGYQYGGRPLGLSF 336
>gi|397613506|gb|EJK62257.1| hypothetical protein THAOC_17140 [Thalassiosira oceanica]
Length = 151
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR-MRGQAFVTFPSVELAH 137
+LY++NL + P++ + IFG +G++ ++L + G+ +G AFV + + A
Sbjct: 42 ILYVRNLPFKITPEELYDIFGK-YGAV------FQIRLGERGKDTKGTAFVVYEDIYDAK 94
Query: 138 RALNLVNGYVFKGKPMIIQF 157
RA++ ++G+ G+ +++Q+
Sbjct: 95 RAVDHLSGFNVGGRYLVVQY 114
>gi|327297312|ref|XP_003233350.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326464656|gb|EGD90109.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 256
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 15/95 (15%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSI--DAAKCGLTVKLMQEGRMRGQAFVT 129
P +Y++NL + + + + IF S +GSI AK L K GQAF+
Sbjct: 13 PNPTVYVRNLEERIKVEQLKEALTEIF-SEYGSILEIVAKTNLKAK--------GQAFIV 63
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F +VE A RA++ VNG+ KPM++++ + + A
Sbjct: 64 FDNVESATRAIDEVNGFELFEKPMVLEYAKTKSDA 98
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|121709896|ref|XP_001272564.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119400714|gb|EAW11138.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 194
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
K+ AG P LY NL + D +LF + L V M+ +MRGQA +
Sbjct: 15 KSLPAGLPNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTV---LDVVAMKTEKMRGQAHI 71
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
F V+ + +A+ + G+ F GK M I + +
Sbjct: 72 VFKDVQASTQAMRALQGFDFFGKEMKIVYAK 102
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDEGGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 332 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 385
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 386 VTEMNGRIVATKPLYV 401
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 229 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 281
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 282 KAVDEMNGKELNGKQIYV 299
>gi|320591904|gb|EFX04343.1| nucleolin protein [Grosmannia clavigera kw1407]
Length = 413
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 56 KLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
K EE + K G +S L++ NL+ +V DD + F D +
Sbjct: 144 KADDEEPAAAKKAKTEEEGETSSTLFVGNLSWNV--DDS--VLYDEFKGFDGLTGARVIT 199
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF--GR------NPAAAK 165
+ R RG +V F SVE A A + + GY G+ + I F GR NPAA++
Sbjct: 200 DRETQRSRGFGYVEFDSVEHAQAAFDKMTGYFLDGRELKIDFSTGRAKSNDANPAASR 257
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 300 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 353
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 354 VTEMNGRIVATKPLYV 369
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 197 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 249
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 250 KAVDEMNGKELNGKQIYV 267
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + G ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 144
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + + + +
Sbjct: 145 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 174
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E A
Sbjct: 190 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECA 242
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 243 RRALEQLNGFELAGRPMRV 261
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 251 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 304
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 305 VTGMNGRIVATKPLYV 320
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 148 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 200
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 201 KAVDEMNGKELNGKQIYV 218
>gi|48146631|emb|CAG33538.1| RNPC4 [Homo sapiens]
Length = 423
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G +TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGLITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 140 LNLVNGYVFKGKPMIIQFGRN 160
+ +NG + KP+ + +
Sbjct: 318 VTEMNGRIVATKPLYVALAQR 338
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 161 VYIKNFGEDMDDEHLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 213
Query: 138 RALNLVNGYVFKGKPMII 155
+A++++NG GK + +
Sbjct: 214 KAVDVMNGKELNGKQIYV 231
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S LY+KNL++ + IFG +G I +AK V + GR +G FV F + E +
Sbjct: 304 SNLYVKNLSESMNETRLREIFGC-YGQIVSAK----VMCHENGRSKGFGFVCFSNCEESK 358
Query: 138 RALNLVNGYVFKGKPMIIQ 156
+A +NG++ GKP++++
Sbjct: 359 QAKRYLNGFLVDGKPIVVR 377
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHR 138
LYIKNL D + DD S FGSI VK+M+E G+ +G V F S E A +
Sbjct: 407 LYIKNL-DDTVDDDRLRRAFSSFGSIS------RVKVMEEEGQRKGFGLVCFSSPEEAAK 459
Query: 139 ALNLVNGYVFKGKPMII 155
A+ +NG V KP+ I
Sbjct: 460 AMTQMNGRVLGSKPLNI 476
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|354505219|ref|XP_003514669.1| PREDICTED: hypothetical protein LOC100753990 [Cricetulus griseus]
Length = 471
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 28 SVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAK 87
SVAKE EE SD P L +G L PE S+ +++ ++ P + IKNL K
Sbjct: 251 SVAKE-EEAAAGGSDENPDFPTASLYVGDLHPEVTESM-LYEKFSPAGPILSILIKNLGK 308
Query: 88 DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 147
+ + IF S FG+I + K E +G FV F E A RA++ +NG
Sbjct: 309 TIDNKALYNIF-SAFGNILSCKVAC-----DEKGPKGYGFVHFQKQESAERAIDALNGMF 362
Query: 148 FKGKPMII 155
+ + +
Sbjct: 363 LNYRKIFV 370
>gi|302675531|ref|XP_003027449.1| hypothetical protein SCHCODRAFT_86032 [Schizophyllum commune H4-8]
gi|300101136|gb|EFI92546.1| hypothetical protein SCHCODRAFT_86032 [Schizophyllum commune H4-8]
Length = 559
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P N+AAGNP + LY+ NL D +F + GSI A + + +GR +G
Sbjct: 290 PPAHNHAAGNPGNQLYVGNLPYQAGWQDLKDLFRTA-GSIVRAD----INIGMDGRPKGS 344
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V F + + A +A+ + NG+ + G+ + ++ R
Sbjct: 345 GTVVFETAKDAQQAIQMYNGFDWYGRVLEVREDR 378
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|66806007|ref|XP_636725.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
gi|74996697|sp|Q54J05.1|RU2B_DICDI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|60465122|gb|EAL63221.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
Length = 241
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY+ NL +K + + +F S +G I L + + +MRGQAF+ F
Sbjct: 10 PNQTLYVNNLYEKISKKKLIEQLLLLF-SKYGPI------LEIVGSKSLKMRGQAFIVFK 62
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL +NG+ F +PM IQ+ ++ + A
Sbjct: 63 DITSASNALREMNGFNFLDRPMKIQYCKSKSDA 95
>gi|400595349|gb|EJP63154.1| pre-mRNA branch site protein p14 [Beauveria bassiana ARSEF 2860]
Length = 169
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +
Sbjct: 15 ALFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SATKGTAFVVYEDVIDAKQ 67
Query: 139 ALNLVNGYVFKGKPMIIQF 157
A + +NG+ F+ + +++ +
Sbjct: 68 ACDKLNGFNFQNRYLVVLY 86
>gi|294953699|ref|XP_002787894.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239902918|gb|EER19690.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 152
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 69 KNYAAGNPASVLYIKNLAKDVIPDDF----FFIFGSLFGSIDAAKCGLTVKLMQEGRMRG 124
K AAG + LY+ NL + DD F +F S FG I A G + RG
Sbjct: 9 KQGAAGGINNTLYVNNLNDKIKLDDLKPLLFELFAS-FGPILAVYAG------KSQSRRG 61
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
QAF+ F A A+ +NG+ F KP+ + F R
Sbjct: 62 QAFIAFREASNAALAMKTLNGFPFLDKPLRVAFAR 96
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 342 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 395
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 396 VTEMNGRIVATKPLYV 411
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 239 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 291
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 292 KAVDEMNGKELNGKQIYV 309
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 350 VTEMNGRIVATKPLYVALAQ 369
>gi|167534320|ref|XP_001748838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772800|gb|EDQ86448.1| predicted protein [Monosiga brevicollis MX1]
Length = 514
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
L++KNLA+DV F F S+ G+ +AK V EG+ RG A V + +LA R
Sbjct: 104 TLFVKNLAEDVDNKTIFDTFASI-GAPSSAK----VMTTAEGKSRGFAIVHYDDPQLAQR 158
Query: 139 ALNLVNGYVFKGKPMIIQ 156
AL+ + G V GK + ++
Sbjct: 159 ALDELEGVVVNGKNIRLE 176
>gi|126303676|ref|XP_001374230.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like isoform 1
[Monodelphis domestica]
Length = 225
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|115400914|ref|XP_001216045.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
gi|114189986|gb|EAU31686.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
Length = 188
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 72 AAGNPASV----LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAF 127
A G PA+V LY NL + D +LF + L V M+ +MRGQA
Sbjct: 12 AQGKPATVPNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTV---LDVVAMKTEKMRGQAH 68
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ F V+ + +A+ + G+ F GK M I + +
Sbjct: 69 IVFKDVQASTQAMRALQGFEFFGKQMKIVYAKG 101
>gi|449549949|gb|EMD40914.1| hypothetical protein CERSUDRAFT_111500 [Ceriporiopsis subvermispora
B]
Length = 123
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRIG------SEQKSRGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|449439191|ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
gi|449520549|ref|XP_004167296.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
Length = 231
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKNL + V ++ + S +G I L V ++ R+RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKVKKEELKRSLYALFSQYGRI------LDVVALKTPRLRGQAWVAFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAK 88
>gi|37748043|gb|AAH59527.1| Snrpb2 protein [Danio rerio]
Length = 229
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKN----LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI N + K+ + + +F S FG I + + ++ RMRGQAFV F
Sbjct: 14 PNHTIYINNVNDKIKKEELKRSLYALF-SQFGQI------MDIVALKTMRMRGQAFVIFK 66
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQ+ +
Sbjct: 67 ELSAATNALRQLQGFPFYNKPMRIQYAK 94
>gi|392568273|gb|EIW61447.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 260
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
++ P + LYIKNL V ++ + + +G I L V ++ +M+GQAF+
Sbjct: 2 SSTQPNTTLYIKNLNDKVKKEELRAQLYALFTTYGRI------LDVVALKGPKMKGQAFL 55
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F + A AL G VF KPM I++ + + A
Sbjct: 56 VFSDLAGATAALRGCEGTVFYDKPMHIEYAKTKSYA 91
>gi|348534739|ref|XP_003454859.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Oreochromis
niloticus]
Length = 282
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 78 SVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
+YI NL KD + + IF S FG I L + + + +M+GQAFV F +
Sbjct: 10 HTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVARNIKMKGQAFVIFKEI 62
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 63 NSASNALRSMQGFPFYDKPMRIQYAK 88
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D + D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 46 LYIKNL-DDTVGDENLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPE-AIKA 98
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG V KP+ + R
Sbjct: 99 VTKMNGCVMSSKPLYVALAR 118
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L + Y N LY+KN+ D I D+ + FG+I +AK ++++G
Sbjct: 283 EQLKMERLSRYQGVN----LYVKNI-DDNIDDERLRKEFTPFGTITSAKV-----MLEDG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F S E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYV 367
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K + + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKAMYDTF-STFGNI------LSCKVAQDESGTSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDKVNGMLLNGKRVFV 171
>gi|340520969|gb|EGR51204.1| predicted protein [Trichoderma reesei QM6a]
Length = 172
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P +YI NL K + + +F S FG + L + ++ MRGQA + F
Sbjct: 25 PNQTIYITNLPSAKIQKQDLRTALYMLF-STFGPV------LDIVALKTMEMRGQAHIVF 77
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ ++G F G+PM IQ+ ++
Sbjct: 78 RDIQAATQAMRTMDGQTFLGRPMKIQYAKS 107
>gi|322708822|gb|EFZ00399.1| pre-mRNA branch site protein p14 [Metarhizium anisopliae ARSEF 23]
Length = 116
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ V P++ F +FG FG I + G++ +G AFV + V A +A
Sbjct: 16 LFVKNLSYSVTPEELFDLFGK-FGPIRQVRQGISTS------TKGTAFVVYEDVMDAKQA 68
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHR 138
LYIKNL + + + F S FGSI VK+MQE GR +G + F S E A +
Sbjct: 295 LYIKNLDETIDDEKLRREFSS-FGSIS------RVKVMQEEGRSKGFGLICFSSAEEATK 347
Query: 139 ALNLVNGYVFKGKPMIIQFGRNP 161
A+ +NG + KP+ I + P
Sbjct: 348 AMTEMNGRILGSKPLNIALAQKP 370
>gi|389586007|dbj|GAB68736.1| U1A small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 376
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKL--MQEGRMRGQAFVTFPSV 133
P LY+KNL + D+ LF + G+ L M+ +GQA+V + +V
Sbjct: 204 PNETLYVKNLNDRIKIDEMKKSLKDLF-----KQYGVIEDLVVMKSFWRKGQAWVVYDTV 258
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
E + +ALN + G+V GK M I + N +
Sbjct: 259 ESSTKALNALQGFVLFGKIMQINYSHNKS 287
>gi|348538124|ref|XP_003456542.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Oreochromis
niloticus]
Length = 218
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI N+ + ++ + S FG + + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGQV------IDIVAMKTMKMRGQAFVIFKE 58
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A AL + G+ F KPM IQ+ +
Sbjct: 59 LAAATNALRQLQGFPFYNKPMRIQYAKT 86
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+ +V ++F +F + FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNINNEVTDEEFRELF-AKFGEVTSS----SLARDQEGKTRGFGFVNFTTHEAAAQA 297
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>gi|395507829|ref|XP_003758221.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Sarcophilus
harrisii]
Length = 225
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|388497012|gb|AFK36572.1| unknown [Medicago truncatula]
Length = 280
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 31 KELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAG------NPASVLYIKN 84
+ L +P E D P A P +PP SL + G N + + + N
Sbjct: 150 RNLSQPADEFVDKPPAAAPVSTNNAYVPP----SLRAGADRTGGSDMRRRNDENSVRVTN 205
Query: 85 LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144
L++D D +FG+ FGS+ + G RG FV F + E A RA+N +N
Sbjct: 206 LSEDTREPDLHELFGT-FGSVSRVYVAID---KNTGTSRGFGFVNFVNREDAQRAINKLN 261
Query: 145 GYVFKGKPMIIQF 157
GY + + +++
Sbjct: 262 GYGYDNLILKVEW 274
>gi|154309565|ref|XP_001554116.1| hypothetical protein BC1G_07253 [Botryotinia fuckeliana B05.10]
gi|347838315|emb|CCD52887.1| similar to pre-mRNA branch site protein p14 [Botryotinia
fuckeliana]
Length = 121
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG+I + G+ +G AFV + V + A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGAIRQIRQGIATN------TKGTAFVVYEDVTDSKTA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 68 CDKLNGFNFQNRYLVVLY 85
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD I S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 140 LNLVNGYVFKGKPMIIQFGRNPAAAKPN 167
+ +NG V KP+ + + K +
Sbjct: 344 VTELNGRVVGSKPLYVALAQRKEERKAH 371
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGINDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ DD LFG AA L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDM--DDERL--KDLFGKFGAA---LSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI A+ ++++GR +G FV F S E A +A
Sbjct: 292 LYIKNL-DDTIDDEKLRKEFSPFGSITRAEV-----MLEDGRSKGFGFVCFSSPEEATKA 345
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 346 VTEMNGRIVGSKPLYVALAQ 365
>gi|4507123|ref|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|38149981|ref|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|332238115|ref|XP_003268248.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Nomascus leucogenys]
gi|332238117|ref|XP_003268249.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Nomascus leucogenys]
gi|397478615|ref|XP_003810638.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Pan
paniscus]
gi|397478617|ref|XP_003810639.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pan
paniscus]
gi|426391004|ref|XP_004061878.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Gorilla gorilla gorilla]
gi|426391006|ref|XP_004061879.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Gorilla gorilla gorilla]
gi|134095|sp|P08579.1|RU2B_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|340105|gb|AAA36796.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|17390031|gb|AAH18022.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|22477822|gb|AAH36737.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|119630689|gb|EAX10284.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|119630690|gb|EAX10285.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|123979922|gb|ABM81790.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|189066590|dbj|BAG35840.1| unnamed protein product [Homo sapiens]
gi|410226668|gb|JAA10553.1| small nuclear ribonucleoprotein polypeptide B [Pan troglodytes]
gi|410226670|gb|JAA10554.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410263358|gb|JAA19645.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410342435|gb|JAA40164.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|403283665|ref|XP_003933231.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Saimiri
boliviensis boliviensis]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|313238053|emb|CBY13172.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 74 GNPASVLYIKNLAKDV----IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVT 129
G P LY+KNL + + + +F S +G + L + + + ++RGQAF+T
Sbjct: 4 GTPCHTLYVKNLNDKIKKIELTRQLYAMF-STYGMV------LDIMVSKAPKLRGQAFIT 56
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + A AL + G+ F K M+I F +
Sbjct: 57 YKDISDAANALKRMQGFPFYEKAMMISFAK 86
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FGSI +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFTPFGSITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 264 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 317
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 318 VTEMNGRIVATKPLYV 333
>gi|323450983|gb|EGB06862.1| hypothetical protein AURANDRAFT_28680 [Aureococcus anophagefferens]
Length = 214
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 72 AAGNPASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAF 127
A+ P +YI NL KD + + +F S FG I C +KL RGQA+
Sbjct: 2 ASVQPNQTVYINNLNEKIKKDALKKSIYSVF-SQFGKILDVVCCRGLKL------RGQAW 54
Query: 128 VTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
V F V A AL + G+ F KPM I F +
Sbjct: 55 VVFADVGAATNALRQMQGFPFFDKPMRIAFAK 86
>gi|297706381|ref|XP_002830019.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pongo
abelii]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|291389004|ref|XP_002711008.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B''
[Oryctolagus cuniculus]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|114681082|ref|XP_514523.2| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 5 [Pan
troglodytes]
gi|114681084|ref|XP_001137830.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 4 [Pan
troglodytes]
gi|296200238|ref|XP_002747509.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Callithrix jacchus]
gi|296200240|ref|XP_002747510.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 3
[Callithrix jacchus]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|55732648|emb|CAH93023.1| hypothetical protein [Pongo abelii]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|444729539|gb|ELW69952.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|387018110|gb|AFJ51173.1| U1 small nuclear ribonucleoprotein A [Crotalus adamanteus]
Length = 281
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +MRGQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRNLKMRGQAFVIFKEIC 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F KPM IQ+ +
Sbjct: 64 SSTNALRSMQGFPFYDKPMRIQYAK 88
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV-- 133
S LY+ +L KDV F +F S+ SI + +T + + G A+V + S
Sbjct: 23 SSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSL------GYAYVNYNSALD 76
Query: 134 -ELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
+ A RA+ +N +V GKPM I + R+P+A K
Sbjct: 77 PQAADRAMETLNYHVVNGKPMRIMWSHRDPSARK 110
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL+ + + DD + G+I + K+M++ G+ +G FV F S + A
Sbjct: 308 LYVKNLSDEEVDDDALRELFANSGTI------TSCKVMKDGSGKSKGFGFVCFTSHDEAT 361
Query: 138 R-ALNLVNGYVFKGKPMIIQFGR 159
R + +NG + KGKP+ + +
Sbjct: 362 RPPVTEMNGKMVKGKPLYVALAQ 384
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|301787297|ref|XP_002929064.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Ailuropoda
melanoleuca]
gi|410954385|ref|XP_003983845.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Felis
catus]
gi|410954387|ref|XP_003983846.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Felis
catus]
gi|281346668|gb|EFB22252.1| hypothetical protein PANDA_019153 [Ailuropoda melanoleuca]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|386781069|ref|NP_001247823.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|402883260|ref|XP_003905142.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Papio
anubis]
gi|402883262|ref|XP_003905143.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Papio
anubis]
gi|402883264|ref|XP_003905144.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 3 [Papio
anubis]
gi|355563375|gb|EHH19937.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|380787253|gb|AFE65502.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|383414075|gb|AFH30251.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|384942630|gb|AFI34920.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|452840644|gb|EME42582.1| hypothetical protein DOTSEDRAFT_73428 [Dothistroma septosporum
NZE10]
Length = 114
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 67 MFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQA 126
M +N A L++KNL+ +V ++ F +FG FGSI + G+ +G A
Sbjct: 1 MSRNKLAPEVNRALFVKNLSYNVTTEELFDLFGK-FGSIRQIRQGIA------SNTKGTA 53
Query: 127 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
FV + V A A + +NG+ F+ + +++ + + AK
Sbjct: 54 FVVYEDVMDAKSACDKLNGFNFQNRYLVVLYHQPEKMAKS 93
>gi|396472554|ref|XP_003839148.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
gi|312215717|emb|CBX95669.1| hypothetical protein LEMA_P028210.1 [Leptosphaeria maculans JN3]
Length = 379
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR--MRGQAFVTFPSV 133
P LYI NL +V D +F S FG I+ VK++ + R RG +V F ++
Sbjct: 190 PGRTLYIGNLYYEVTADQLQRVF-SRFGEIE------NVKIIYDNRGLSRGFGYVEFKNI 242
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
A A++ ++ VF+G+ +++QF R
Sbjct: 243 PDAQTAIDNLDMQVFEGRNLVVQFHR 268
>gi|149640848|ref|XP_001514376.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Ornithorhynchus anatinus]
gi|345329106|ref|XP_003431335.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Ornithorhynchus anatinus]
Length = 225
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|114652057|ref|XP_001159475.1| PREDICTED: probable RNA-binding protein 23 isoform 10 [Pan
troglodytes]
Length = 442
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|440893400|gb|ELR46188.1| U2 small nuclear ribonucleoprotein B'', partial [Bos grunniens
mutus]
Length = 233
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 13 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 69
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 70 STNALRQLQGFPFYGKPMRIQYAK 93
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNLA+ + IF FG++ +AK +++ GR +G FV+F S E A +A
Sbjct: 304 LFVKNLAESTDDEHLRKIFAP-FGTVTSAKV-----IVKGGRRKGFGFVSFSSREEAKKA 357
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ ++G + +P+ + + R
Sbjct: 358 VEEMHGKMLSARPLYVSYAR 377
>gi|344298615|ref|XP_003420987.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Loxodonta
africana]
Length = 450
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+ +L ++ D IF FG ID L K G +G F+TF E A RA
Sbjct: 268 LYVGSLHFNITEDMLRGIF-EPFGKIDDI---LLTKDSDTGHSKGYGFITFSDSECARRA 323
Query: 140 LNLVNGYVFKGKPMII 155
L +NG+ G+PM +
Sbjct: 324 LEQLNGFELAGRPMRV 339
>gi|449495575|ref|XP_004176204.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|359718900|ref|NP_001240769.1| U2 small nuclear ribonucleoprotein B'' [Equus caballus]
gi|328908863|gb|AEB61099.1| u2 small nuclear ribonucleoprotein B''-like protein [Equus
caballus]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|114652071|ref|XP_522797.2| PREDICTED: probable RNA-binding protein 23 isoform 12 [Pan
troglodytes]
Length = 408
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 217 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 269
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 270 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 302
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG-RMRGQAFVTFPS 132
G LYIKNL D I D+ S FGSI VK+MQEG + +G + F S
Sbjct: 260 GCQGVKLYIKNL-DDTIDDEKLRKEFSSFGSIS------RVKVMQEGGQSKGFGLICFSS 312
Query: 133 VELAHRALNLVNGYVFKGKPMII 155
+E A +A+ +NG++ KP+ I
Sbjct: 313 LEEATKAMTEMNGHILGSKPLSI 335
>gi|354542538|ref|NP_001238897.1| U2 small nuclear ribonucleoprotein B'' [Canis lupus familiaris]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|157819927|ref|NP_001102062.1| U2 small nuclear ribonucleoprotein B'' [Rattus norvegicus]
gi|354492046|ref|XP_003508163.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cricetulus
griseus]
gi|149041257|gb|EDL95190.1| rCG27500, isoform CRA_c [Rattus norvegicus]
gi|197245976|gb|AAI68760.1| Small nuclear ribonucleoprotein polypeptide B'' [Rattus norvegicus]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M++G
Sbjct: 283 EQLKLERLSRYQGVN----LYVKNL-DDSINDERLRREFAPFGTITSAKV-----MMEDG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|344279401|ref|XP_003411476.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Loxodonta
africana]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|324523388|gb|ADY48239.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 228
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL K+ + + IF S FG + + V + +MRGQA V F
Sbjct: 6 PNHTIYINNLNEKTKKEELRKALYTIF-SEFGQV------IDVLAFKTLKMRGQAHVIFK 58
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F KPM IQF R
Sbjct: 59 EMSSASNALRAMQGFPFYDKPMRIQFAR 86
>gi|116175273|ref|NP_001070696.1| uncharacterized protein LOC768116 [Sus scrofa]
gi|426240670|ref|XP_004014217.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Ovis
aries]
gi|115371759|gb|ABI96204.1| RU2B [Sus scrofa]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|395858003|ref|XP_003801365.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Otolemur
garnettii]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M++G
Sbjct: 254 EQLKLERLSRYQGVN----LYVKNL-DDSINDERLRREFAPFGTITSAKV-----MMEDG 303
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 304 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 338
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGK 151
G FV F + E A+++++ VNG + GK
Sbjct: 140 GYGFVHFETEEAANKSIDKVNGMLLNGK 167
>gi|359806644|ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycine max]
gi|255647802|gb|ACU24361.1| unknown [Glycine max]
Length = 232
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKN+ + V D+ + S +G I L V ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNINEKVKKDELKRSLYCLFSQYGRI------LDVIALKTPKLRGQAWVCFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKT 89
>gi|123994687|gb|ABM84945.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|261861662|dbj|BAI47353.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|384497441|gb|EIE87932.1| hypothetical protein RO3G_12643 [Rhizopus delemar RA 99-880]
Length = 291
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+ ++ L + NL++DV D + +F + FG+I A+ L + + +G AFV+F S E
Sbjct: 209 DDSATLRVTNLSEDVTDSDIYDLF-NRFGNI--ARVYL-ARDRETNLCKGFAFVSFNSRE 264
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
A RA +NGY + + ++F R+
Sbjct: 265 DADRAQQAINGYGYDNLILRVEFARS 290
>gi|384497191|gb|EIE87682.1| hypothetical protein RO3G_12393 [Rhizopus delemar RA 99-880]
Length = 267
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+ ++ L + NL++DV D + +F + FGSI A+ L + + +G AFV+F + E
Sbjct: 185 DDSATLRVTNLSEDVTDSDIYDLF-NRFGSI--ARVYL-ARDRETNLCKGFAFVSFNNRE 240
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
A RA +NGY + + ++F R+
Sbjct: 241 DADRAQQAINGYGYDNLILRVEFARS 266
>gi|346978177|gb|EGY21629.1| pre-mRNA branch site protein p14 [Verticillium dahliae VdLs.17]
Length = 117
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVMDAKQA 68
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|417397429|gb|JAA45748.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|389633809|ref|XP_003714557.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae 70-15]
gi|351646890|gb|EHA54750.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae 70-15]
gi|440466499|gb|ELQ35764.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae Y34]
gi|440482089|gb|ELQ62610.1| pre-mRNA branch site protein p14 [Magnaporthe oryzae P131]
Length = 115
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 68 CDKLNGFNFQNRYLVVLY 85
>gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus musculus]
gi|52783420|sp|Q9CQI7.1|RU2B_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|12847289|dbj|BAB27510.1| unnamed protein product [Mus musculus]
gi|12851400|dbj|BAB29026.1| unnamed protein product [Mus musculus]
gi|20072417|gb|AAH26794.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gi|126035620|gb|ABN72533.1| U2 small nuclear ribonucleoprotein B [Mus spretus]
gi|148696479|gb|EDL28426.1| mCG19497, isoform CRA_c [Mus musculus]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|406988412|gb|EKE08420.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 123
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ NL D D +FGS +G + VK++ + GR RG AFV + + A
Sbjct: 8 LYVGNLNFDASEDQVRELFGS-YGEVQ------EVKIIMDRFSGRSRGFAFVRMATADEA 60
Query: 137 HRALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
+A + ++G F+GK ++I + R+ ++P
Sbjct: 61 GKAKDALSGQPFQGKSLVIDWARSEQTSRP 90
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
E L L Y N LY+KNL D I D+ + FG+I +AK +M++G
Sbjct: 283 EQLKLERLSRYQGVN----LYVKNL-DDSINDERLRREFAPFGTITSAKV-----MMEDG 332
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
R +G FV F + E A +A+ +NG + KP+ +
Sbjct: 333 RSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K++ + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKNIDNKAMYDTF-SAFGNI------LSCKVAQDESGVSK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A+++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIDKVNGMLLNGKKVYV 171
>gi|355784710|gb|EHH65561.1| U2 small nuclear ribonucleoprotein B'' [Macaca fascicularis]
Length = 225
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|226292456|gb|EEH47876.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 206
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY NL + D +LF + L V M+ +MRGQA V F ++ + +A
Sbjct: 28 LYCTNLPDKLKKPDLRLALYALFSTYGTV---LDVVAMKTAKMRGQAHVVFRDIQASTQA 84
Query: 140 LNLVNGYVFKGKPMIIQFGRN 160
+ + G+ F GK M I +G+
Sbjct: 85 MRALQGFEFFGKEMKIVYGKG 105
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV-KLMQEGRMRGQAFVTFPSVE 134
P++ L+I LA + DD + F FG + G+ + K + GR +G +V F S +
Sbjct: 493 PSNTLFIGGLAWALTEDDIWNAFAE-FGEV----TGVRLPKEIDSGRPKGFGYVEFVSQD 547
Query: 135 LAHRALNLVNGYVFKGKPMIIQF 157
A +AL +NG G+P+ I F
Sbjct: 548 NAAKALETMNGQALGGRPIRIDF 570
>gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +M+GQAFV F V
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRIMKMKGQAFVIFKEVN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIQYAK 88
>gi|300796380|ref|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos taurus]
gi|426240672|ref|XP_004014218.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Ovis
aries]
gi|296481542|tpg|DAA23657.1| TPA: small nuclear ribonucleoprotein polypeptide B'' [Bos taurus]
Length = 218
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL +V D+F +F +G++ +A + + +EG+ +G FV F + + A +A
Sbjct: 232 LYVKNLDPEVTQDEFIELFKK-YGNVTSA----VISVDEEGKSKGFGFVNFETHDEAQKA 286
Query: 140 LNLVNGYVFKGKPMII 155
++ +N + KGK + +
Sbjct: 287 VDELNDFELKGKKLFV 302
>gi|380495949|emb|CCF32001.1| RNP domain-containing protein [Colletotrichum higginsianum]
Length = 187
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 68 FKNYA-AGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA AG S +Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 74 FTDYATAGTDRSETIYVRNLPWSTSNEDLVELFTTI-GKVEQAE----IQYEPSGRSRGT 128
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V F S E A A+ GY + G+P+ + F R AA
Sbjct: 129 GVVRFDSAETAETAIAKFQGYQYGGRPLGLSFVRYLNAA 167
>gi|344298617|ref|XP_003420988.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Loxodonta
africana]
Length = 416
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+ +L ++ D IF FG ID L K G +G F+TF E A RA
Sbjct: 234 LYVGSLHFNITEDMLRGIF-EPFGKIDDI---LLTKDSDTGHSKGYGFITFSDSECARRA 289
Query: 140 LNLVNGYVFKGKPMII 155
L +NG+ G+PM +
Sbjct: 290 LEQLNGFELAGRPMRV 305
>gi|344298613|ref|XP_003420986.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Loxodonta
africana]
Length = 434
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+ +L ++ D IF FG ID L K G +G F+TF E A RA
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGKIDDI---LLTKDSDTGHSKGYGFITFSDSECARRA 307
Query: 140 LNLVNGYVFKGKPMII 155
L +NG+ G+PM +
Sbjct: 308 LEQLNGFELAGRPMRV 323
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FG+I +AK +M+ GR +G FV F S + A +A
Sbjct: 330 LYIKNL-DDTINDEHLRKEFSPFGTITSAKV-----MMENGRSKGFGFVCFSSSKDAAKA 383
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+NG + KP+ + +
Sbjct: 384 SREMNGKLVASKPLYVSLAQ 403
>gi|449280001|gb|EMC87413.1| U2 small nuclear ribonucleoprotein B'' [Columba livia]
Length = 226
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+ +V ++F +F + FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNINNEVTDEEFRELF-AKFGEVTSS----SLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>gi|426246411|ref|XP_004016988.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Ovis aries]
Length = 225
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 46 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 99
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 100 VTEMNGRIVATKPLYV 115
>gi|27803030|emb|CAD60733.1| unnamed protein product [Podospora anserina]
Length = 516
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 57 LPPEEILSLPMFKNYAAGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVK 115
+PP P N AG + ++Y++NL DD +F ++ G ++ A+ ++
Sbjct: 400 VPPN-----PFTDNATAGTEKNEIIYVRNLPWSTSNDDLVELFSTI-GKVEQAE----IQ 449
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
GR RG V F + + A A+N GY + G+P+ + +
Sbjct: 450 YEPSGRSRGSGVVRFDNADTAETAINKFQGYQYGGRPLGLSY 491
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 16 TPKASQTEDKDDSVAKELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAA-- 73
+P++S E+ + K PN D +E + E + P A+
Sbjct: 7 SPRSSIEEEDRQASPKYARSPNDASQDRHQQTKQDENKSSGNEGERRSTSPSSNQMASEH 66
Query: 74 ---GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
NP + LY+ NLA V ++ +F FG ++ KC + + + RG AFVTF
Sbjct: 67 GDIANPGNNLYVANLAHRVTDEELRQLF-EKFGRLE--KCEIIIDPISR-ESRGFAFVTF 122
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQF 157
V A A+ +NG +G+ M ++
Sbjct: 123 EDVRDASDAVQELNGKDIQGRRMRVEH 149
>gi|114652069|ref|XP_001159523.1| PREDICTED: probable RNA-binding protein 23 isoform 11 [Pan
troglodytes]
Length = 426
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|410261842|gb|JAA18887.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349771|gb|JAA41489.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|50738734|ref|XP_419331.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Gallus
gallus]
gi|326914835|ref|XP_003203728.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Meleagris
gallopavo]
Length = 226
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|226443332|ref|NP_001139849.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
gi|221219334|gb|ACM08328.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKN----LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI N + KD + + +F S FG + + + M+ +MRGQAFV F
Sbjct: 5 PNHTIYINNVNDKIKKDELKRSLYALF-SQFGQV------MDIVAMKTMKMRGQAFVVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+ A AL + G+ F PM IQ+ +
Sbjct: 58 ELASATNALRQLQGFPFYNNPMRIQYAK 85
>gi|156045603|ref|XP_001589357.1| hypothetical protein SS1G_09992 [Sclerotinia sclerotiorum 1980]
gi|154694385|gb|EDN94123.1| hypothetical protein SS1G_09992 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 194
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG+I + G+ +G AFV + V + A
Sbjct: 15 LFVKNLSYNVTPEELFDLFGK-FGAIRQIRQGIATN------TKGTAFVVYEDVTDSKTA 67
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 68 CDKLNGFNFQNRYLVVLY 85
>gi|410218752|gb|JAA06595.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307724|gb|JAA32462.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307728|gb|JAA32464.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 442
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>gi|388513995|gb|AFK45059.1| unknown [Medicago truncatula]
Length = 229
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 31 KELEEPNKEDSDVKPFATPEELEMGKLPPEEILSLPMFKNYAAG------NPASVLYIKN 84
+ L +P E D P A P +PP SL + G N + + + N
Sbjct: 99 RNLSQPADEFVDKPPAAAPVSTNNAYVPP----SLRAGADRTGGSDMRRRNDENSVRVTN 154
Query: 85 LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144
L++D D +FG+ FGS+ + G RG FV F + E A RA+N +N
Sbjct: 155 LSEDTREPDLHELFGT-FGSVSRVYVAID---KNTGTSRGFGFVNFVNREDAQRAINKLN 210
Query: 145 GYVFKGKPMIIQF 157
GY + + +++
Sbjct: 211 GYGYDNLILKVEW 223
>gi|398394979|ref|XP_003850948.1| hypothetical protein MYCGRDRAFT_28783, partial [Zymoseptoria
tritici IPO323]
gi|339470827|gb|EGP85924.1| hypothetical protein MYCGRDRAFT_28783 [Zymoseptoria tritici IPO323]
Length = 90
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
G P +++Y+KNL DD +F ++ G ++ A+ V+ GR RG V F
Sbjct: 7 GGGQPNAIIYVKNLPWATSDDDLVELFQTI-GIVERAE----VQYKANGRHRGAGVVQFG 61
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
S A A+ + GY + G+P+ + + R
Sbjct: 62 SQGDATTAIMRLQGYSYGGRPLHLNYAR 89
>gi|15227729|ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
gi|75318049|sp|O22922.1|RU2B1_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|2347192|gb|AAC16931.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis thaliana]
gi|110743428|dbj|BAE99600.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|330253269|gb|AEC08363.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
Length = 232
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI+NL + + ++ + S FG I L V ++ ++RGQA+VTF
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAAGHAVRQMQNFPFYDKPMRLQYAK 88
>gi|409079658|gb|EKM80019.1| hypothetical protein AGABI1DRAFT_113250 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198578|gb|EKV48504.1| hypothetical protein AGABI2DRAFT_192107 [Agaricus bisporus var.
bisporus H97]
Length = 122
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL ++ +D + +FG +GSI + G E + +G AFV F V A
Sbjct: 17 ILFVKNLNYNITGEDLYDLFGR-YGSIRQIRIG------NEQKTKGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 271 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 324
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 325 VTEMNGRIVATKPLYV 340
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 168 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 220
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 221 KAVDEMNGKELNGKQIYV 238
>gi|346320333|gb|EGX89934.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 201
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P +YI NL KD + + +F S FG + L + ++ MRGQA + F
Sbjct: 24 PNQTIYITNLPSAKIQKDDLRTALYMLF-STFGPV------LDIVALKTMSMRGQAHIVF 76
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ ++G F G+ M IQ+ ++
Sbjct: 77 RDIQAATQAMRTLDGEEFLGRAMKIQYAKS 106
>gi|297826425|ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
gi|297326934|gb|EFH57354.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
Length = 232
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI+NL + + ++ + S FG I L V ++ ++RGQA+VTF
Sbjct: 8 PNQSIYIQNLNEKIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRLQYAK 88
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 343 VTEMNGRIVGTKPLYV 358
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K + F F S FG+I L+ K+ Q+ G +
Sbjct: 82 PSLRKSGVGN----VFIKNLDKSIDNKALFDTF-SAFGNI------LSCKVAQDETGASK 130
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
G FV F + E A++++ VNG + GK ++ GR
Sbjct: 131 GYGFVHFETEEAANKSIEKVNGMLLNGK--MVYVGR 164
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 18 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 71
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 72 VTEMNGRIVATKPLYV 87
>gi|410218750|gb|JAA06594.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410307726|gb|JAA32463.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|261191117|ref|XP_002621967.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591011|gb|EEQ73592.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239613076|gb|EEQ90063.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 253
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 76 PASVLYIKNLAKDV----IPDDFFFIFGSLFGSID-AAKCGLTVKLMQEGRMRGQAFVTF 130
P S +Y++NL + + + + IF ID AK L K GQAF+ F
Sbjct: 13 PNSTVYVRNLEERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAK--------GQAFIVF 64
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+V+ A RA+ +NG+ KPM++ + R + A
Sbjct: 65 DNVDSATRAIEEINGFELFEKPMVLDYARTRSDA 98
>gi|156402885|ref|XP_001639820.1| predicted protein [Nematostella vectensis]
gi|156226951|gb|EDO47757.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YIKNL K+ + + IF S FG I L + ++ +MRGQAFV F
Sbjct: 5 PNQTIYIKNLNEKIKKEELKKSLYAIF-SQFGPI------LDIVALKTLKMRGQAFVVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF--GRNPAAAK 165
+ A AL + G+ F KPM IQ+ G++ A AK
Sbjct: 58 DIGSATNALRSMQGFPFYDKPMRIQYAKGKSDAVAK 93
>gi|393246058|gb|EJD53567.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 139
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G + + RG AFV + V A
Sbjct: 35 ILFVKNLNYTITGEDLYDLFGR-YGSIRQVRIG------NDAKTRGTAFVVYEDVMDAKN 87
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 88 ALDHLNGFHLQERYIVVLY 106
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 26/118 (22%)
Query: 57 LPPEEILSLPMF-------KNYAAGNPASV---------LYIKNLAKDVIPDDFFFIFGS 100
L +++LS+P+ KN AA N ++ LY+ +L ++ + IF
Sbjct: 219 LSGQKLLSIPIMVQASQAEKNRAAQNSQNLQKGNSGPMRLYVGSLHFNITEEMLRGIF-E 277
Query: 101 LFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FG ID ++LM++ GR +G F+TF E A +AL +NG+ G+PM +
Sbjct: 278 PFGKID------NIQLMKDNETGRSKGYGFITFHDAEDAKKALEQLNGFELAGRPMKV 329
>gi|213510744|ref|NP_001134742.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
gi|209735590|gb|ACI68664.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
Length = 281
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +MRGQAFV F V
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVARSLKMRGQAFVIFKEVN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM I + +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIGYAK 88
>gi|320032581|gb|EFW14533.1| hypothetical protein CPSG_08791 [Coccidioides posadasii str.
Silveira]
Length = 182
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 11 GVPNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTV---LDVVAMKTEKMRGQAHVVFRDI 67
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I + +
Sbjct: 68 QTSTQAMRALQGFNFFGKEMRIVYAK 93
>gi|410261840|gb|JAA18886.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349769|gb|JAA41488.1| RNA binding motif protein 23 [Pan troglodytes]
gi|410349773|gb|JAA41490.1| RNA binding motif protein 23 [Pan troglodytes]
Length = 426
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ G
Sbjct: 235 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHS 287
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 288 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 320
>gi|351695324|gb|EHA98242.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 224
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|119185131|ref|XP_001243379.1| hypothetical protein CIMG_07275 [Coccidioides immitis RS]
gi|392866259|gb|EAS28872.2| RNA binding domain-containing protein [Coccidioides immitis RS]
Length = 182
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 11 GVPNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTV---LDVVAMKTEKMRGQAHVVFRDI 67
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I + +
Sbjct: 68 QTSTQAMRALQGFNFFGKEMKIVYAK 93
>gi|391344304|ref|XP_003746441.1| PREDICTED: ELAV-like protein 4-like [Metaseiulus occidentalis]
Length = 394
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 61 EILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG 120
+IL+ P+ A +++ NLA D + + +FG FG++ + K ++ +Q
Sbjct: 295 DILTTPLLAGNAINGTGWCIFVYNLAPDTEENLLWQLFGP-FGAVQSVK---VIRDLQTN 350
Query: 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ +G FVT + + A A+ +NGY + + + F N
Sbjct: 351 KCKGFGFVTMTNYDEAVVAIQTLNGYTLGNRVLQVSFKTN 390
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 341 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 394
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 395 VTEMNGRIVATKPLYV 410
>gi|303313750|ref|XP_003066884.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106551|gb|EER24739.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 182
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 11 GVPNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTV---LDVVAMKTEKMRGQAHVVFRDI 67
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGR 159
+ + +A+ + G+ F GK M I + +
Sbjct: 68 QTSTQAMRALQGFNFFGKEMKIVYAK 93
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL +V D F +F S FG++ +A ++ +EG+ +G FV F + E A +A
Sbjct: 237 LYVKNLDLEVTQDQFVELF-SQFGAVTSA----VIQTDEEGKSKGFGFVNFENHEQAAKA 291
Query: 140 LNLVNGYVFKGKPMII 155
++ ++ F GK + +
Sbjct: 292 VDTLHDTDFNGKKLFV 307
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 298 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 351
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 352 VTEMNGRIVGTKPLYV 367
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K + + F + FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKTIDNKAMYDTF-TAFGNI------LSCKVAQDETGASK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ FG+I +AK + GR +G FV F S E A +A
Sbjct: 288 LYVKNL-DDSIDDEGLREAFKQFGNITSAKVITDLN----GRSKGFGFVCFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG +F GKP+ +
Sbjct: 343 VTEMNGRIFGGKPLYV 358
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSV 133
P LY+KNL D I D+ + +G+I + K+M++ G RG FV F +
Sbjct: 315 PGLNLYLKNL-DDTISDEKLKEMFADYGTI------TSCKVMRDPTGISRGSGFVAFSTP 367
Query: 134 ELAHRALNLVNGYVFKGKPMII 155
E A RAL +NG +F GKP+ +
Sbjct: 368 EEATRALGEMNGKMFAGKPLYV 389
>gi|348581624|ref|XP_003476577.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cavia
porcellus]
Length = 224
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|148231281|ref|NP_001085808.1| RNA binding motif protein 23 [Xenopus laevis]
gi|49118375|gb|AAH73374.1| MGC80803 protein [Xenopus laevis]
Length = 416
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ + IF FG I+ ++L++E GR
Sbjct: 238 MSNNLQRGNFGPMRLYVGSLHFNITEEMLRGIF-EPFGKIE------NIQLLKEPDTGRS 290
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ GKPM +
Sbjct: 291 KGFGFITFTDAECARRALEQLNGFELAGKPMKV 323
>gi|390601474|gb|EIN10868.1| pre-mRNA branch site protein p14 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 123
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G E + RG AFV F V A
Sbjct: 17 ILFVKNLNYAITGEDLYDLFGR-YGSIRQIRIG------NEQKTRGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 298 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 351
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 352 VTEMNGRIVGTKPLYV 367
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K + + F S FG+I L+ K+ Q+ G +
Sbjct: 91 PSLRKSGVGN----VFIKNLDKTIDNKAMYDTF-SAFGNI------LSCKVAQDETGASK 139
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A++++ VNG + GK + +
Sbjct: 140 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 171
>gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|400603369|gb|EJP70967.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 200
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 76 PASVLYIKNL-----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
P LY+ NL KD + + +F S FG + L + ++ MRGQA + F
Sbjct: 24 PNQTLYVTNLPSAKIQKDDLRTALYMLF-STFGPV------LDIVALKTMAMRGQAHIVF 76
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ A +A+ ++G F G+ M IQ+ ++
Sbjct: 77 RDIQAATQAMRTLDGDEFLGRSMKIQYAKS 106
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL KD+ F F S FG+I + + V ++G RG
Sbjct: 91 PSLRKSGVGN----VFIKNLHKDIDNKAIFDTF-SAFGNILSCR----VATDEQGNSRGY 141
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A+ A+N VNG + K + +
Sbjct: 142 GFVHFETEEAANEAINKVNGMLLNEKKVFV 171
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL DVI D+ + +G+I +AK + R +G FV F S E A +A
Sbjct: 298 LYVKNL-DDVIDDERLRREFAPYGTITSAKVMMDST---GARSKGFGFVCFSSPEEATKA 353
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 354 VTEMNGRIIVQKPLYV 369
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ FG+I +AK + GR +G FV F S E A +A
Sbjct: 288 LYVKNL-DDSIDDEGLREAFKQFGNITSAKVITDLN----GRSKGFGFVCFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG +F GKP+ +
Sbjct: 343 VTEMNGRIFGGKPLYV 358
>gi|449295579|gb|EMC91600.1| hypothetical protein BAUCODRAFT_38709 [Baudoinia compniacensis UAMH
10762]
Length = 239
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 76 PASVLYIKNLAKDV-----IP--DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
P++ +YIKNL +DV +P + F FG++ + AK + + +GQAF+
Sbjct: 10 PSATIYIKNLDEDVKLTTLVPALRELFEDFGNIIDIV--AKKSV--------KRKGQAFI 59
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ SV+ A A + +N + GKPM I+F + + A
Sbjct: 60 VYDSVDAAQDAKDEMNSFEIFGKPMHIEFAKTRSDA 95
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 231 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 284
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP +
Sbjct: 285 VTEMNGRIVATKPFYV 300
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 128 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 180
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 181 KAVDEMNGKELNGKQIYV 198
>gi|167518960|ref|XP_001743820.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777782|gb|EDQ91398.1| predicted protein [Monosiga brevicollis MX1]
Length = 213
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P+ +YIKNL K+ + + +F S FG I L V ++ +MRGQAF+ F
Sbjct: 5 PSPTIYIKNLNDRIQKEELRRTLYGLF-SQFGGI------LDVVALKTNKMRGQAFIVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V A AL + + KPM IQ+ + + A
Sbjct: 58 DVGCASNALRSMQKFPLFDKPMSIQYAKAKSYA 90
>gi|389744433|gb|EIM85616.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 280
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 67 MFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQA 126
M + P + LY+ NL + ++ + G LF + V + +MRGQA
Sbjct: 1 MASSSTVTQPNTTLYLNNLNDQIQKEE---LRGQLFALFTTYGKVIDVVATKTQKMRGQA 57
Query: 127 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F+ F + A AL +G +F KP+ +Q+ + + A
Sbjct: 58 FLVFTDLAAATSALRATDGMLFYDKPLRVQYAKTKSYA 95
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 293 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 346
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 347 VTEMNGRIVATKPLYV 362
>gi|261330753|emb|CBH13738.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 666
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S L+I L V +F S FGSI++AK L + GR RG AFV F + A
Sbjct: 272 SNLFISGLRHSVTDSGLHELF-SPFGSIESAKVMLDI---HTGRSRGIAFVKFVRLCDAQ 327
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
RA+ +NG +F G+ + ++ + AA +P
Sbjct: 328 RAVEALNGSIFCGETITVRVAKPNAAYRP 356
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FG+I +AK ++++GR +G FV F S E A +A
Sbjct: 289 LYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 342
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 343 VTEMNGRIVGTKPLYV 358
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMR 123
P + GN ++IKNL K + + F S FG+I L+ K+ Q+ G +
Sbjct: 82 PSLRKSGVGN----VFIKNLDKAIDNKAMYDTF-SAFGNI------LSCKVAQDENGASK 130
Query: 124 GQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
G FV F + E A++++ VNG + GK + +
Sbjct: 131 GYGFVHFETEEAANKSIEKVNGMLLNGKKVYV 162
>gi|212543363|ref|XP_002151836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
gi|210066743|gb|EEA20836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
Length = 177
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LYIKNL + D +LF + L V +++ +MRGQA + + +
Sbjct: 16 GAPNQTLYIKNLPDKIKKPDLRMALYTLFSTYGPV---LDVVVLKTAKMRGQAHIVYRDI 72
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ + +A+ + G+ F GK + I + + +
Sbjct: 73 QASTQAMRALQGFDFFGKELNIVYAKGSS 101
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 225 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 278
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP +
Sbjct: 279 VTEMNGRIVATKPFYV 294
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 122 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 174
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 175 KAVDEMNGKELNGKQIYV 192
>gi|302922980|ref|XP_003053579.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734520|gb|EEU47866.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 116
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SNTKGTAFVVYEDVMDAKQA 68
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|402226279|gb|EJU06339.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 123
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +G+I + G E + RG AFV + V A
Sbjct: 18 ILFVKNLNYTITGEDLYDLFGR-YGTIRQIRLG------NEQKTRGTAFVVYDDVMDAKN 70
Query: 139 ALNLVNGYVFKGKPMIIQFG---RNPAAAK 165
AL+ +NG+ + + +++ + R AAA+
Sbjct: 71 ALDHLNGFHLQERYIVVLYHMPTRQEAAAQ 100
>gi|342877370|gb|EGU78838.1| hypothetical protein FOXB_10660 [Fusarium oxysporum Fo5176]
Length = 177
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 77 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVADAKQA 129
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 130 CDKLNGFNFQNRYLVVLY 147
>gi|426232774|ref|XP_004010395.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Ovis aries]
Length = 463
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+G P LY+ +L ++ D IF FG ID + +K + G +G F+TF
Sbjct: 273 GSGGPVR-LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSETGCSKGYGFITFS 327
Query: 132 SVELAHRALNLVNGYVFKGKPMII 155
E A RAL +NG+ G+PM I
Sbjct: 328 DSECARRALEQLNGFELAGRPMRI 351
>gi|326427500|gb|EGD73070.1| hypothetical protein PTSG_12213 [Salpingoeca sp. ATCC 50818]
Length = 1010
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 57 LPPEEILSLPMFKNYAAGNPASV--LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV 114
+P L + +G SV L+++NLA V +D ++F I + V
Sbjct: 1 MPSRRQRKLRAAEGTRSGTDMSVATLFVRNLAFSVTAEDL----ENVFSDIGPVRQCFIV 56
Query: 115 KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
K Q G RG +V F E A A ++G+ G+PM +QF R A P
Sbjct: 57 KTPQGG-SRGFGYVLFGMREDAMEAQKQLDGHKLHGRPMSVQFARRKGAQGP 107
>gi|291403541|ref|XP_002718109.1| PREDICTED: RNA binding motif protein 23 isoform 2 [Oryctolagus
cuniculus]
Length = 444
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E
Sbjct: 267 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECG 319
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 320 RRALEQLNGFELAGRPMRV 338
>gi|426232776|ref|XP_004010396.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Ovis aries]
Length = 447
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
+G P LY+ +L ++ D IF FG ID + +K + G +G F+TF
Sbjct: 257 GSGGPVR-LYVGSLHFNITEDMLRGIF-EPFGKIDNI---VLMKDSETGCSKGYGFITFS 311
Query: 132 SVELAHRALNLVNGYVFKGKPMII 155
E A RAL +NG+ G+PM I
Sbjct: 312 DSECARRALEQLNGFELAGRPMRI 335
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKL---MQEGRMRGQAFV 128
+A P++VL++ NL+ D D + +FG G + +V+L + GR +G +V
Sbjct: 391 SASEPSAVLFVGNLSWDCTEDQVWEVFGE-HGDVK------SVRLPTDRETGRPKGFGYV 443
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQF 157
F +E A +A ++G G+P+ + +
Sbjct: 444 EFTDIETAKKAFEGLSGTEVAGRPIRLDY 472
>gi|310796361|gb|EFQ31822.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 441
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 68 FKNYA-AGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA AG S +Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 328 FTDYATAGTDRSETIYVRNLPWSTSNEDLVELFTTI-GKVEQAE----IQYEPSGRSRGT 382
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V F S E A A+ GY + G+P+ + F R AA
Sbjct: 383 GVVRFDSAETAETAIAKFQGYQYGGRPLGLSFVRYLNAA 421
>gi|291403543|ref|XP_002718110.1| PREDICTED: RNA binding motif protein 23 isoform 3 [Oryctolagus
cuniculus]
Length = 428
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E
Sbjct: 251 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECG 303
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 304 RRALEQLNGFELAGRPMRV 322
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM---QEGRM 122
M N GN + LY+ +L ++ + IF FG I+ +++LM + GR
Sbjct: 237 MANNLQKGNAGPMRLYVGSLHFNITEEMLRGIF-EPFGKIE------SIQLMMDSETGRS 289
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A +AL+ +NG+ G+PM +
Sbjct: 290 KGYGFITFSDTECAKKALDQLNGFELAGRPMKV 322
>gi|119630691|gb|EAX10286.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_b
[Homo sapiens]
Length = 242
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>gi|346322501|gb|EGX92100.1| pre-mRNA branch site protein p14 [Cordyceps militaris CM01]
Length = 171
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +
Sbjct: 15 ALFVKNLSYNVTPEELFALFGK-FGPIRQVRQGIAPG------TKGTAFVVYEDVIDAKQ 67
Query: 139 ALNLVNGYVFKGKPMIIQF 157
A + +NG+ F+ + +++ +
Sbjct: 68 ACDKLNGFNFQNRYLVVLY 86
>gi|452980615|gb|EME80376.1| hypothetical protein MYCFIDRAFT_31866 [Pseudocercospora fijiensis
CIRAD86]
Length = 200
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P LYI+NL + + D ++ S +G + L + ++ +MRGQA V F
Sbjct: 19 PNQSLYIQNLPEKLQKADLKRNLYMLLSTYGPV------LDITALKTPKMRGQAHVLFRD 72
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A +A+ GY F G+ M I + ++
Sbjct: 73 VNSATQAMRHCQGYEFFGREMKISYAKS 100
>gi|291403539|ref|XP_002718108.1| PREDICTED: RNA binding motif protein 23 isoform 1 [Oryctolagus
cuniculus]
Length = 410
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG ID + LM++ GR +G F+TF E
Sbjct: 233 LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRSKGYGFITFSDSECG 285
Query: 137 HRALNLVNGYVFKGKPMII 155
RAL +NG+ G+PM +
Sbjct: 286 RRALEQLNGFELAGRPMRV 304
>gi|71024221|ref|XP_762340.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
gi|46101864|gb|EAK87097.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
Length = 475
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P+S L+I NL+ DV DD + F S G + + K GR +G +V F + E
Sbjct: 310 PSSTLFIGNLSFDVSEDDVWNAF-SEHGEVSGVRL---PKDPDSGRPKGFGYVEFAAQES 365
Query: 136 AHRALNLVNGYVFKGKPMIIQF 157
A A++ + G G+P+ + F
Sbjct: 366 AQAAIDAMTGQELAGRPLRLDF 387
>gi|72393389|ref|XP_847495.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359593|gb|AAX80026.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70803525|gb|AAZ13429.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 666
Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S L+I L V +F S FGSI++AK L + GR RG AFV F + A
Sbjct: 272 SNLFISGLRHSVTDSGLHELF-SPFGSIESAKVMLDI---HTGRSRGIAFVKFVRLCDAQ 327
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAKP 166
RA+ +NG +F G+ + ++ + AA +P
Sbjct: 328 RAVEALNGSIFCGETITVRVAKPNAAYRP 356
>gi|358398756|gb|EHK48107.1| hypothetical protein TRIATDRAFT_155183 [Trichoderma atroviride IMI
206040]
Length = 116
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------NNTKGTAFVVYEDVMDAKQA 68
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +++ +
Sbjct: 69 CDKLNGFNFQNRYLVVLY 86
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|342877151|gb|EGU78658.1| hypothetical protein FOXB_10844 [Fusarium oxysporum Fo5176]
Length = 490
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
A ++Y++NL DD +F ++ G ++ A+ ++ GR RG V F
Sbjct: 384 AGTERGEIIYVRNLPWSTSNDDLVELFTTI-GKVEQAE----IQYEPSGRSRGTGVVRFD 438
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQF 157
S E A A+ GY + G+P+ + F
Sbjct: 439 SAETAETAIAKFQGYQYGGRPLNLSF 464
>gi|429854655|gb|ELA29652.1| pre-mRNA branch site protein p14 [Colletotrichum gloeosporioides
Nara gc5]
Length = 109
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
A L++KNL+ +V P++ F +FG FG I + G+ +G AFV +
Sbjct: 2 ADCSCRALFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SGTKGTAFVVYED 54
Query: 133 VELAHRALNLVNGYVFKGKPMIIQF 157
V A +A + +NG+ F+ + +I+ +
Sbjct: 55 VMDAKQACDKLNGFNFQNRYLIVLY 79
>gi|315044563|ref|XP_003171657.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311344000|gb|EFR03203.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 256
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 20/108 (18%)
Query: 67 MFKNYAAGN---PASVLYIKNLAKDVIPD-------DFFFIFGSLFGSIDAAKCGLTVKL 116
M A+G+ P +Y++NL + + D + F +GS+ + AK L K
Sbjct: 1 MATTVASGSTILPNPTVYVRNLEERIKIDQLKEALTEIFSEYGSILEIV--AKTNLKAK- 57
Query: 117 MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
GQAF+ F +V+ A RA++ VNG+ KPM++++ + + A
Sbjct: 58 -------GQAFIVFDNVDSATRAIDEVNGFELFEKPMVLEYAKTRSDA 98
>gi|41054443|ref|NP_955965.1| U1 small nuclear ribonucleoprotein A [Danio rerio]
gi|39850066|gb|AAH64308.1| Small nuclear ribonucleoprotein polypeptide A [Danio rerio]
Length = 281
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +M+GQAFV F +
Sbjct: 11 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRTLKMKGQAFVIFKEIN 63
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGR 159
A AL + G+ F KPM IQ+ +
Sbjct: 64 SASNALRSMQGFPFYDKPMRIQYSK 88
>gi|406862056|gb|EKD15108.1| RNP domain protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 397
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 68 FKNYA-AGNPAS-VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
F +YA AG+ S ++Y++NL +D +F ++ G ++ A+ ++ GR RG
Sbjct: 288 FTDYATAGSERSEIIYVRNLPWSTSNEDLVELFTTI-GKVEQAE----IQYEPNGRSRGT 342
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
V F S E A A+ +GY + G+P+ + F
Sbjct: 343 GVVRFDSAEGADTAIEKFSGYQYGGRPLGLSF 374
>gi|395324165|gb|EJF56611.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 123
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G E + +G AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRIG------NEQKTKGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|169626491|ref|XP_001806645.1| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
gi|160706106|gb|EAT76075.2| hypothetical protein SNOG_16535 [Phaeosphaeria nodorum SN15]
Length = 321
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 41 SDVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGS 100
+D K TP+ L + P P + LYI NL +V + +F S
Sbjct: 92 TDAKATITPDTLGQVEDAARNAERRPRRSRENNTPPHNTLYIGNLYYEVTTEQLQKVF-S 150
Query: 101 LFGSIDAAKCGLTVKLMQEGR--MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158
FG + +VK++ + R RG +V F S++ A A++ ++ VF+G+ +++Q+
Sbjct: 151 RFGEV------ASVKIVYDNRGMSRGFGYVEFKSIDDAQTAIDNLDMQVFEGRNLVVQYH 204
Query: 159 R 159
R
Sbjct: 205 R 205
>gi|169601282|ref|XP_001794063.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
gi|111067587|gb|EAT88707.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
Length = 177
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 74 GNPASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTF 130
G P LY++NL + +D ++ + +G + L V ++ +MRGQA V F
Sbjct: 18 GIPNRTLYVRNLNDKLPKEDLKRSLYMLFATYGVV------LDVVALKTAKMRGQAHVVF 71
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
++ + +A+ + G+ F GK M I + +
Sbjct: 72 RDLDASTQAMRALQGFTFFGKDMQIAYAKT 101
>gi|290992905|ref|XP_002679074.1| predicted protein [Naegleria gruberi]
gi|284092689|gb|EFC46330.1| predicted protein [Naegleria gruberi]
Length = 212
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 89 VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
+ + +FG FG + L V + + RGQAF+ F V A A +NGYVF
Sbjct: 35 TLKKQLYSMFGQ-FGEV------LDVIASRYEKTRGQAFIVFKDVATATAAKKKLNGYVF 87
Query: 149 KGKPMIIQFGRNPAAA 164
KPM I F ++ + A
Sbjct: 88 HDKPMHINFAKSKSDA 103
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P+SVL+I+NL +DV + +LF + D K ++L+ E +G AFV + ++E
Sbjct: 136 PSSVLFIENLPRDVEKSSE--LLETLFNNYDGYK---KLRLVGE---KGVAFVEYETIEQ 187
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A A + + K +PM I F +
Sbjct: 188 ATSAREGLQSWKIKQQPMRISFKK 211
>gi|170100094|ref|XP_001881265.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643944|gb|EDR08195.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
P S L + NL ++ P D IFG + G++ ++ + GR G AF+ F +
Sbjct: 53 TPNSKLVVSNLHYEITPKDLTAIFGQI-GTLVREPL---IRYDRSGRSSGTAFIAFETNA 108
Query: 135 LAHRALNLVNGYVFKGKPMIIQFG----RNP 161
A RA +G + KG+PM I F RNP
Sbjct: 109 EATRAKKQFDGILAKGQPMEIVFDALPPRNP 139
>gi|395503034|ref|XP_003755878.1| PREDICTED: probable RNA-binding protein 23 [Sarcophilus harrisii]
Length = 451
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 270 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDPDTGRSKGFGFL 321
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 322 TFSDSECARRALEQLNGFELAGRPMRV 348
>gi|343427935|emb|CBQ71460.1| related to NSR1-nuclear localization sequence binding protein
[Sporisorium reilianum SRZ2]
Length = 459
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P+S L+I NL+ D+ DD + F S G + + K GR +G +V F + E
Sbjct: 304 PSSTLFIGNLSFDISEDDVWNAF-SEHGEVSGVRL---PKDPDSGRPKGFGYVEFAAQES 359
Query: 136 AHRALNLVNGYVFKGKPMIIQF 157
A AL+ + G G+P+ + F
Sbjct: 360 AQAALDAMTGQELAGRPLRLDF 381
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P+ L+I NL+ + + F IFG +G++ + + Q +G +V F SVE
Sbjct: 280 PSDTLFIGNLSFNTERNKLFEIFGE-YGTVVSCRLPTHPDTQQP---KGFGYVQFSSVEE 335
Query: 136 AHRALNLVNGYVFKGKPMIIQF 157
A ALN +NG G+P + F
Sbjct: 336 AQNALNSLNGEYLDGRPCRLDF 357
>gi|126277396|ref|XP_001369125.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Monodelphis
domestica]
Length = 449
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 268 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDPDTGRSKGFGFL 319
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 320 TFSDSECARRALEQLNGFELAGRPMRV 346
>gi|217069866|gb|ACJ83293.1| unknown [Medicago truncatula]
Length = 211
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKNL + + D+ + S +G I L + ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAKT 89
>gi|429864037|gb|ELA38421.1| u1 small nuclear [Colletotrichum gloeosporioides Nara gc5]
Length = 247
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 72 AAGNPASVLYIKNLAK----DVIPDDFFFIFGSLFGSID-AAKCGLTVKLMQEGRMRGQA 126
A+ P + +Y++NL + D + D IF +D AK L R +GQA
Sbjct: 2 ASSAPITTVYVRNLEERAKIDQLKDALLQIFSEYGNVLDIVAKSNL--------RAKGQA 53
Query: 127 FVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
FV F S E A +A++ V G+ KPM + R + A
Sbjct: 54 FVVFDSPESAQKAIDDVQGFELFDKPMQLALARTRSDA 91
>gi|256421371|ref|YP_003122024.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256036279|gb|ACU59823.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 108
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+ NL + D IF S FG + +AK +K + GR RG FV P+ E +A
Sbjct: 3 IYVANLHYRLNDADLHQIF-SEFGEVTSAKI---IKDHETGRSRGFGFVEMPNQEEGSKA 58
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
++ +NG +GK +++ R
Sbjct: 59 MDSLNGTEIEGKQLMVNEAR 78
>gi|221060785|ref|XP_002261962.1| U1 small nuclear ribonucleoprotein a [Plasmodium knowlesi strain H]
gi|193811112|emb|CAQ41840.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium knowlesi
strain H]
Length = 499
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY+KNL + D+ LF + + +M+ +GQA+V + +VE
Sbjct: 218 PNETLYVKNLNDRIKIDEMKKSLKDLFKQYGVIE---DLVVMKSFWRKGQAWVVYDTVES 274
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRN 160
+ +ALN + G+V GK M I + N
Sbjct: 275 STKALNALQGFVLFGKIMQINYSHN 299
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +++ GR +G FV F S E A +A
Sbjct: 65 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MLEGGRSKGFGFVCFSSPEEATKA 118
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 119 VTEMNGRIVATKPLYV 134
>gi|240275413|gb|EER38927.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325091251|gb|EGC44561.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus H88]
Length = 253
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 75 NPASVLYIKNLAKDV----IPDDFFFIFGSLFGSID-AAKCGLTVKLMQEGRMRGQAFVT 129
P S +Y++NL + + + + IF ID AK L K GQAFV
Sbjct: 12 TPNSTIYVRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAK--------GQAFVV 63
Query: 130 FPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
F +V+ A RA+ +NG+ KPM++ + + + A
Sbjct: 64 FDNVDSATRAIEEINGFELFEKPMVLDYAKTRSDA 98
>gi|156088273|ref|XP_001611543.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798797|gb|EDO07975.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 285
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 76 PASVLYIKNLAK----DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YIKN+ + DV+ + +FG FG I L + + +GQAF+ F
Sbjct: 29 PNQTIYIKNINERIKVDVLKAELLKMFGR-FGKI------LDIVALTSFWRKGQAFIIFD 81
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
+VE A AL+ + G+V G M I + R
Sbjct: 82 NVESATNALHEMQGFVMDGHAMQINYAR 109
>gi|388501866|gb|AFK38999.1| unknown [Medicago truncatula]
Length = 234
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKNL + + D+ + S +G I L + ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAK 88
>gi|145538301|ref|XP_001454856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422633|emb|CAK87459.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY+ L + +D F+ LF L + + + ++RGQAF+ F ++
Sbjct: 18 PKETLYVTGLNDKIKLEDLKFVLYILFSQFGEV---LQIVMKKTQKLRGQAFIVFQNITY 74
Query: 136 AHRALNLVNGYVFKGKPMIIQFG 158
A A + + G + KP+II+F
Sbjct: 75 ATNAKSALTGMMVYDKPLIIEFA 97
>gi|357491327|ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355517286|gb|AES98909.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|388501104|gb|AFK38618.1| unknown [Medicago truncatula]
Length = 233
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIKNL + + D+ + S +G I L + ++ ++RGQA+V F
Sbjct: 8 PNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRI------LDIIALKTPKLRGQAWVCFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + + F KPM IQ+ +
Sbjct: 62 VTAASNAVRQMQNFPFYEKPMRIQYAK 88
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
>gi|443899731|dbj|GAC77060.1| nuclear localization sequence binding protein, partial [Pseudozyma
antarctica T-34]
Length = 400
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P+S L+I NL+ D+ DD + F S G + + K GR +G +V F + E
Sbjct: 300 PSSTLFIGNLSFDISEDDVWNAF-SEHGEVSGVRL---PKDPDSGRPKGFGYVEFAAQES 355
Query: 136 AHRALNLVNGYVFKGKPMIIQF 157
A A++ + G G+P+ + F
Sbjct: 356 AQAAIDAMTGQELAGRPLRLDF 377
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGLDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|396458052|ref|XP_003833639.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
gi|312210187|emb|CBX90274.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
Length = 182
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY++NL K+ + + + +F + ID + +K M +MRGQA V F
Sbjct: 21 PNRTLYVRNLPDKLGKEDLKRNLYMLFATYGVVIDI----VALKTM---KMRGQAHVVFR 73
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
V+ + +A+ + G+ F GK M I + + + A
Sbjct: 74 DVDSSTQAMRALQGFTFFGKEMQIAYAKTKSDA 106
>gi|126277398|ref|XP_001369153.1| PREDICTED: probable RNA-binding protein 23 isoform 2 [Monodelphis
domestica]
Length = 433
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 252 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDPDTGRSKGFGFL 303
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 304 TFSDSECARRALEQLNGFELAGRPMRV 330
>gi|58331942|ref|NP_001011120.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
gi|54038268|gb|AAH84519.1| hypothetical LOC496533 [Xenopus (Silurana) tropicalis]
gi|89268683|emb|CAJ82680.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
Length = 223
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI NL V + +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELSS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ ++
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKS 86
>gi|66824987|ref|XP_645848.1| hypothetical protein DDB_G0269286 [Dictyostelium discoideum AX4]
gi|60474056|gb|EAL71993.1| hypothetical protein DDB_G0269286 [Dictyostelium discoideum AX4]
Length = 1235
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
PAS LYI+N+ + V DF +F S +G I K V+ +G AFV + ++E
Sbjct: 25 PASNLYIRNIDRPVNERDFLDLF-SKYGKI---KNHSIVETHPKGPY---AFVEYETLEQ 77
Query: 136 AHRALNLVNGYVFKGKPMIIQFG---RNPAAAKPN 167
A A +N FKGK + I + +NP AKPN
Sbjct: 78 ADEAKESLNKATFKGKKLFIDYASSYKNP--AKPN 110
>gi|327308762|ref|XP_003239072.1| hypothetical protein TERG_08678 [Trichophyton rubrum CBS 118892]
gi|326459328|gb|EGD84781.1| hypothetical protein TERG_08678 [Trichophyton rubrum CBS 118892]
Length = 361
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 37 NKEDSDVKPFATPEELEMGKLPPEEILSLPM--FKNYA--AGNPASVLYIKNLAKDVIPD 92
+ED + F+ P G S+P F +YA G +Y++NL +
Sbjct: 210 GREDLAAQGFSGPGSAHDGTAAA----SIPANPFTDYATYGGERGVSIYVRNLPWSTCNE 265
Query: 93 DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152
D +F S G ++ A+ ++ GR RG V F + + A A++ GY + G+P
Sbjct: 266 DLVELF-STIGKVERAE----IQYEPNGRSRGTGVVQFDTADNAETAISKFTGYQYGGRP 320
Query: 153 MIIQF 157
+ + F
Sbjct: 321 LGLSF 325
>gi|403373310|gb|EJY86574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 303
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY++NL + V D LF + + V + +MRGQAFV E
Sbjct: 66 PNPTLYVQNLNERVKAADLKNALYQLFSNYGEV---IEVHAKKNIKMRGQAFVVCQDEEA 122
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A A+ + GY+F GKP+ + + +
Sbjct: 123 ADSAIQALRGYMFFGKPLRLNYAK 146
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D D+ S FG+I + K V + GR +G FV+F + E A +A
Sbjct: 320 LYLKNL-DDSFSDEKLKDLFSEFGTITSCK----VMIDSNGRSKGSGFVSFSTPEEASKA 374
Query: 140 LNLVNGYVFKGKPMII 155
LN +NG + KP+ +
Sbjct: 375 LNEMNGKLIGRKPLYV 390
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGLDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL D I DD S FG+I + K+M++ G RG FV F + E A
Sbjct: 316 LYVKNL-DDSIADDKLRELFSEFGTI------TSCKVMRDPNGISRGSGFVAFSTAEEAS 368
Query: 138 RALNLVNGYVFKGKPMII 155
RAL +NG + KP+ +
Sbjct: 369 RALADMNGKMVASKPLYV 386
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + D+ S FG+I + K V L +G +G FV F + E A RA
Sbjct: 324 LYLKNL-DDSVNDEKLXELFSEFGTITSCK----VMLDPQGLSKGSGFVAFLTPEEATRA 378
Query: 140 LNLVNGYVFKGKPMII 155
LN++NG + KP+ +
Sbjct: 379 LNVMNGKMIGRKPLYV 394
>gi|317142939|ref|XP_001819205.2| pre-mRNA branch site p14-like protein [Aspergillus oryzae RIB40]
Length = 146
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 57 LPPEEIL----SLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGL 112
L P +IL S P A +L++KNL +V + F +FG FG I + G+
Sbjct: 19 LSPYQILGPSLSHPRMSRKLAPEANRILFVKNLNYNVTAEQLFDLFGK-FGPIRQIRQGI 77
Query: 113 TVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157
+G AFV + V A +A + +NG+ F+ + +++ +
Sbjct: 78 A------NNSKGTAFVVYEDVHDAKQACDKLNGFNFQNRYLVVLY 116
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGLDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|126277401|ref|XP_001369188.1| PREDICTED: probable RNA-binding protein 23 isoform 3 [Monodelphis
domestica]
Length = 415
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 234 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDPDTGRSKGFGFL 285
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 286 TFSDSECARRALEQLNGFELAGRPMRV 312
>gi|145543087|ref|XP_001457230.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425045|emb|CAK89833.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY+ L + +D F+ LF L + + + ++RGQAF+ F ++
Sbjct: 18 PKETLYVSGLNDKIKLEDLKFVLYILFSQFGEV---LQIVMKKTQKLRGQAFIVFQNITY 74
Query: 136 AHRALNLVNGYVFKGKPMIIQFG 158
A A + ++G + KP+II+F
Sbjct: 75 ATNAKSALSGMMVYDKPLIIEFA 97
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMDGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ D IF S +G+ +++++M + G+ RG FV+F E A
Sbjct: 193 VYIKNFGEDMDDDKLKDIF-SKYGN------AMSIRVMTDENGKSRGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
RA++ +NG GK +I GR
Sbjct: 246 RAVDEMNGKEMNGK--LIYVGR 265
>gi|440801091|gb|ELR22116.1| hypothetical protein ACA1_159130 [Acanthamoeba castellanii str.
Neff]
Length = 270
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P LY+ NL + V D+ + +L+G L + + ++RGQAFV F +
Sbjct: 7 PNETLYVNNLNEKVKRDE---LRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIGS 63
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + + F KPM IQ+ ++
Sbjct: 64 ASTALKALQSFAFYDKPMHIQYAKS 88
>gi|68471181|ref|XP_720367.1| hypothetical protein CaO19.7076 [Candida albicans SC5314]
gi|77022468|ref|XP_888678.1| hypothetical protein CaO19_7076 [Candida albicans SC5314]
gi|46442232|gb|EAL01523.1| hypothetical protein CaO19.7076 [Candida albicans SC5314]
gi|76573491|dbj|BAE44575.1| hypothetical protein [Candida albicans]
Length = 297
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
A G + +Y+ NL DD + +F ++ + A ++ +GR G A V F
Sbjct: 209 ADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAE-----IQYADDGRPSGNAVVQFE 263
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
+LA A++ +N Y++ G+ + I + + P
Sbjct: 264 IADLAENAISQLNNYLYGGRNLQISYAKRP 293
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL D I DD S FG+I + K+M++ G RG FV F + E A
Sbjct: 313 LYVKNL-DDSITDDKLKELFSEFGTI------TSCKVMRDPNGVSRGSGFVAFSTAEEAS 365
Query: 138 RALNLVNGYVFKGKPMII 155
RAL +NG + KP+ +
Sbjct: 366 RALTEMNGKMVVSKPLYV 383
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D + D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGLDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|449679798|ref|XP_002163097.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Hydra
magnipapillata]
Length = 219
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL K+ + + IF + FGSI L V M+ +MRGQAFV F
Sbjct: 5 PNQTIYINNLNEKVKKEELKKALYAIF-TQFGSI------LDVVAMKTLKMRGQAFVVFK 57
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL + G+ F KPM I + R+ + A
Sbjct: 58 DIPSATNALRSMQGFPFYDKPMRIAYCRSKSDA 90
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D+ ++ F S FG+I +AK +M GR +G FV F + E A A
Sbjct: 395 LYIKNLDDDIDDENLRKEFSS-FGTITSAKV-----MMNNGRSKGFGFVCFSAPEEATTA 448
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
+ +NG + KP+ + +
Sbjct: 449 VTEMNGRLVASKPLYVALAQ 468
>gi|392568043|gb|EIW61217.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 123
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+L++KNL + +D + +FG +GSI + G + + RG AFV F V A
Sbjct: 17 ILFVKNLNYQITGEDLYDLFGR-YGSIRQIRIG------NDQKSRGTAFVVFDDVMDAKN 69
Query: 139 ALNLVNGYVFKGKPMIIQF 157
AL+ +NG+ + + +++ +
Sbjct: 70 ALDHLNGFHLQERYIVVLY 88
>gi|327348269|gb|EGE77126.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ATCC 18188]
Length = 196
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
G P LY NL + D +LF + L V M+ +MRGQA V F +
Sbjct: 13 GAPNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTV---LDVVAMKTAKMRGQAHVVFRDI 69
Query: 134 ELAHRALNLVNGYVFKGKPM 153
+ + +A+ + G+ F GK M
Sbjct: 70 QASTQAMRALQGFEFFGKEM 89
>gi|147902216|ref|NP_001085460.1| MGC80122 protein [Xenopus laevis]
gi|49257361|gb|AAH72799.1| MGC80122 protein [Xenopus laevis]
Length = 223
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI NL V + +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELSS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ ++
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAKS 86
>gi|171913967|ref|ZP_02929437.1| RNP-1 like RNA-binding protein [Verrucomicrobium spinosum DSM 4136]
Length = 238
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+ NL+ D D F LF K V + R +G AFVT SV+ A +A
Sbjct: 129 LYVGNLSYDASESDLF----ELFNGSGRVKNAEVVVNNRTQRSKGFAFVTMMSVDEAKKA 184
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F G+P+++
Sbjct: 185 VDDLNGKDFMGRPLVV 200
>gi|402875680|ref|XP_003901625.1| PREDICTED: probable RNA-binding protein 23 [Papio anubis]
Length = 497
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ G +G F+
Sbjct: 313 GSGGPMR-LYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGHSKGYGFI 364
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMII 155
TF E A RAL +NG+ G+PM +
Sbjct: 365 TFSDSECARRALEQLNGFELAGRPMRV 391
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D D+ S FG+I + K V + GR +G FV+F + E A +A
Sbjct: 320 LYLKNL-DDSFSDEKLKDLFSEFGTITSCK----VMIDSNGRSKGSGFVSFSTPEEASKA 374
Query: 140 LNLVNGYVFKGKPMII 155
LN +NG + KP+ +
Sbjct: 375 LNEMNGKLIGRKPLYV 390
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+ +V ++F +F S +G + ++ T+ QEG+ RG FV F + + A +A
Sbjct: 247 VYVKNINLEVTEEEFRELF-SKYGEVTSS----TLARDQEGKSRGFGFVNFSTHDSAAKA 301
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG F+G+ + +
Sbjct: 302 VEELNGKEFRGQELYV 317
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ G RG FV F + E A +A
Sbjct: 601 LYVKNL-DDSIDDERLRKAFSPFGTITSAKV-----MMEGGHSRGFGFVCFSAPEEAAKA 654
Query: 140 LNLVNGYVFKGKPMIIQFGR 159
++ +NG + KP+ + +
Sbjct: 655 VSEMNGKLVATKPLYVALAQ 674
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ D +FG FG L+VK+M + G+ +G FV++ E A
Sbjct: 498 VYIKNFGEDMDNDRLTEVFGK-FGH------ALSVKVMTDESGKSKGFGFVSYEKHEDAQ 550
Query: 138 RALNLVNGYVFKGKPMII 155
RA++ +NG F GK + +
Sbjct: 551 RAVDEMNGKEFNGKRIYV 568
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KNL +V DDF +F FG++ +A ++ ++G+ RG FV F + E A +A
Sbjct: 231 IYVKNLDPEVTQDDFVKLF-EQFGNVTSA----VIQTDEQGQSRGFGFVNFETHEEAQKA 285
Query: 140 LNLVNGYVFKGKPMII 155
+ ++ + G+ + +
Sbjct: 286 VETLHDSEYHGRKLFV 301
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL D I DD S +G I + K+M++ G +G FV F + E A
Sbjct: 322 LYMKNL-DDSIGDDQLCELFSNYGKI------TSCKIMRDANGVSKGSGFVAFSTREEAS 374
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
+AL +NG + GKP+ + F +
Sbjct: 375 QALTEMNGKMISGKPLYVAFAQ 396
>gi|390601524|gb|EIN10918.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 247
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133
P + LY+ NL V ++ +LF + + V + +MRGQAF+ F +
Sbjct: 2 AQPNTTLYVNNLNDKVNKEELRAQLYALFTTYGKV---IDVIASKTPKMRGQAFLVFSEL 58
Query: 134 ELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
A AL G VF KP+ IQ+ + + A
Sbjct: 59 AGATSALRACEGMVFYDKPLRIQYAKTKSYA 89
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL DV+ D+ S FG+I +A+ + + GR +G FV F S E A +A
Sbjct: 297 LYVKNL-DDVVDDERLRKEFSQFGTITSARV-----MSEGGRSKGFGFVCFSSPEEATKA 350
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 351 VTEMNGRIIVSKPLYV 366
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKIA-----SDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A +A+ VNG + GK + +
Sbjct: 141 GFVHFETEEAARQAIEKVNGMLLNGKKVYV 170
>gi|297259926|ref|XP_002798213.1| PREDICTED: RNA-binding protein 39-like [Macaca mulatta]
Length = 427
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM---QEGRMRGQAFVTFPSV 133
A ++ LA + P D F S G I+ +++LM + GR +G F+TF
Sbjct: 152 ARTVFCMQLAARIRPRDLEEFF-STVGKIE------SIQLMMDSETGRSKGYGFITFSDS 204
Query: 134 ELAHRALNLVNGYVFKGKPMII 155
E A +AL +NG+ G+PM +
Sbjct: 205 ECAKKALEQLNGFELAGRPMKV 226
>gi|321265410|ref|XP_003197421.1| RNA binding protein [Cryptococcus gattii WM276]
gi|317463901|gb|ADV25634.1| RNA binding protein, putative [Cryptococcus gattii WM276]
Length = 286
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 70 NYAAGNPASVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFV 128
N N LY++NL + V IP + +L+ + + RMRGQAF+
Sbjct: 51 NRVPDNACETLYLQNLNEKVRIP----VMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFI 106
Query: 129 TFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
+FP +E A+ A VN + GK + I+F +
Sbjct: 107 SFPDIESANEARKDVNEFPLYGKSVQIKFAK 137
>gi|297838525|ref|XP_002887144.1| hypothetical protein ARALYDRAFT_475881 [Arabidopsis lyrata subsp.
lyrata]
gi|297332985|gb|EFH63403.1| hypothetical protein ARALYDRAFT_475881 [Arabidopsis lyrata subsp.
lyrata]
Length = 519
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 65 LPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRG 124
P GN L I NL V IF ++G + + + R
Sbjct: 156 FPQLNAVPEGNNQGSLVIMNLEPTVSSTTLRHIF-QVYGEVKQVR--------ETPYKRE 206
Query: 125 QAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
Q FV F V A +AL ++NG V GKPM+IQF R
Sbjct: 207 QRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 241
>gi|74354072|gb|AAI02329.1| SNRPB2 protein [Bos taurus]
Length = 106
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGRNPA 162
+ AL + G+ F GKPM IQ+ + +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDS 88
>gi|146093385|ref|XP_001466804.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398019095|ref|XP_003862712.1| hypothetical protein, conserved [Leishmania donovani]
gi|134071167|emb|CAM69853.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322500942|emb|CBZ36019.1| hypothetical protein, conserved [Leishmania donovani]
Length = 210
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L + LA+DV D +F + FG +D A+ + Q RG FV F + A +A
Sbjct: 115 LIVNYLAQDVTSADLHTLF-ARFGPLDGARI---IFDRQTSMPRGYGFVYFRYPDSAKQA 170
Query: 140 LNLVNGYVFKGKPMIIQFGRNP 161
++ +NGY F GK + + + NP
Sbjct: 171 VDTMNGYEFHGKRLKVGYSTNP 192
>gi|238883218|gb|EEQ46856.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 465
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
A G + +Y+ NL DD + +F ++ + A ++ +GR G A V F
Sbjct: 377 ADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAE-----IQYADDGRPSGNAVVQFE 431
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNP 161
+LA A++ +N Y++ G+ + I + + P
Sbjct: 432 IADLAENAISQLNNYLYGGRNLQISYAKRP 461
>gi|407921847|gb|EKG14985.1| protein of unknown function DUF2235 [Macrophomina phaseolina MS6]
Length = 198
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNLA----KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY NL K + + IF S +GS+ L + ++ +MRGQA + F
Sbjct: 22 PNQTLYCSNLPDKLPKKNLKRQLYLIF-STYGSV------LDIITLKTIKMRGQAHIVFQ 74
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
+ A +A+ + G+ F GK M IQ+ ++
Sbjct: 75 DIPKATQAMRSLQGFEFFGKKMSIQYAKS 103
>gi|380473728|emb|CCF46147.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 105
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L++KNL+ +V P++ F +FG FG I + G+ +G AFV + V A +A
Sbjct: 16 LFVKNLSYNVTPEELFDLFGK-FGPIRQVRQGIA------SGTKGTAFVVYEDVMDAKQA 68
Query: 140 LNLVNGYVFKGKPMIIQF 157
+ +NG+ F+ + +I+ +
Sbjct: 69 CDKLNGFNFQNRYLIVLY 86
>gi|431907193|gb|ELK11259.1| Putative RNA-binding protein 23 [Pteropus alecto]
Length = 914
Score = 43.5 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFV 128
+G P LY+ +L ++ D IF FG ID + LM++ GR +G F+
Sbjct: 238 GSGGPMR-LYVGSLHFNITEDMLRGIFEP-FGKID------NIVLMKDSDTGRSKGYGFI 289
Query: 129 TFPSVELAHRALNLVNGYVFKGKPM 153
TF E A RAL +NG+ G+PM
Sbjct: 290 TFSESECARRALEQLNGFELAGRPM 314
>gi|393218308|gb|EJD03796.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 279
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 79 VLYIKNLAK----DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
LYI+NL + +V+ +F + +G + L V + RMRGQAFV+F
Sbjct: 54 TLYIQNLNERIKLNVMKQTLHALFLN-YGDV------LDVVAHRNLRMRGQAFVSFADAS 106
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+A +A VN + KPM I F R + A
Sbjct: 107 IAKKAQREVNRFPLYSKPMQISFARTRSDA 136
>gi|388497682|gb|AFK36907.1| unknown [Lotus japonicus]
Length = 229
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 70 NYAAGNPASVLYIKNLA---KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ-EGRMRGQ 125
N AA P S+L++ ++ D DD F I G ++ + TVK + +G+ R
Sbjct: 35 NKAASAPTSMLFVGGISPTTTDRHLDDAFSIHGDVYLA--------TVKHTKVDGKPRQF 86
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAA 163
V F +VE A RAL +NG V +G+ + I + +N +
Sbjct: 87 GLVAFTTVECATRALQALNGQVLQGRRLRINYTKNSHS 124
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL D I DD S +G I + K+M++ G +G FV F + E A
Sbjct: 323 LYMKNL-DDSIGDDQLCELFSNYGKI------TSCKIMRDANGVSKGSGFVAFSTREEAS 375
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
+AL +NG + GKP+ + F +
Sbjct: 376 QALTEMNGKMISGKPLYVAFAQ 397
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
LY+KNL D I DD S +G I + K+M++ G +G FV F + E A
Sbjct: 323 LYMKNL-DDSIGDDQLCELFSNYGKI------TSCKIMRDANGVSKGSGFVAFSTREEAS 375
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
+AL +NG + GKP+ + F +
Sbjct: 376 QALTEMNGKMISGKPLYVAFAQ 397
>gi|389594239|ref|XP_003722366.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438864|emb|CBZ12624.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 210
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
L + LA+DV D +F + FG +D A+ + Q RG FV F + A +A
Sbjct: 115 LIVNYLAQDVTSADLHTLF-ARFGPLDGARI---IFDRQTSMPRGYGFVYFRYPDSAKQA 170
Query: 140 LNLVNGYVFKGKPMIIQFGRNP 161
++ +NGY F GK + + + NP
Sbjct: 171 VDTMNGYEFHGKRLKVGYSTNP 192
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVE 134
S +Y+KN+ DV ++ F S FG+I ++K LM++ G +G FV F + +
Sbjct: 295 GSNVYVKNIDDDVTDEELRERF-SQFGTITSSK------LMRDDKGINKGFGFVCFSNPD 347
Query: 135 LAHRALNLVNGYVFKGKPMII 155
A RA+N + G +F GKP+ +
Sbjct: 348 EAKRAVNTLQGCMFHGKPLYL 368
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,737,468,707
Number of Sequences: 23463169
Number of extensions: 111323608
Number of successful extensions: 366777
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 1905
Number of HSP's that attempted gapping in prelim test: 363390
Number of HSP's gapped (non-prelim): 5031
length of query: 167
length of database: 8,064,228,071
effective HSP length: 128
effective length of query: 39
effective length of database: 9,355,909,735
effective search space: 364880479665
effective search space used: 364880479665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)