BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039336
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4G055|RBM40_RAT RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=2 SV=2
Length = 515
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
KEDSD P F + ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D
Sbjct: 377 KEDSDEMPSQFISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLK 436
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM+
Sbjct: 437 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMV 496
Query: 155 IQFGRN 160
+QF R+
Sbjct: 497 VQFARS 502
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q3UZ01|RBM40_MOUSE RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2
Length = 514
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 39 EDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFF 96
EDSD P F + +ELE G++ EE+ +L +F++Y G P +Y+KNLA+ V D F
Sbjct: 377 EDSDEIPSQFISRKELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLARHVQEKDLKF 436
Query: 97 IFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV GKPM++
Sbjct: 437 IFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVV 496
Query: 156 QFGRN 160
QF R+
Sbjct: 497 QFARS 501
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q5R6C7|RBM40_PONAB RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1
Length = 517
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAFV P+ + A +AL NGYV
Sbjct: 432 EEKDLKYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q96LT9|RBM40_HUMAN RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1
Length = 517
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Query: 32 ELEEPNKEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDV 89
++ E KEDSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V
Sbjct: 372 DITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHV 431
Query: 90 IPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148
D +IFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV
Sbjct: 432 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 491
Query: 149 KGKPMIIQFGRN 160
GKPM++QF R+
Sbjct: 492 FGKPMVVQFARS 503
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q3MHP0|RBM40_BOVIN RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1
Length = 516
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 38 KEDSDVKP--FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFF 95
K+DSD P + ELE G++ EE+ +L +F++Y G P +Y+KNLAK V D
Sbjct: 377 KDDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLK 436
Query: 96 FIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154
FIFG S + + ++LM+EGRM+GQAF+ P+ + A +AL NGYV GKPM+
Sbjct: 437 FIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 496
Query: 155 IQFGRN 160
+QF R+
Sbjct: 497 VQFARS 502
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 116 LMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159
L +GR++ AF TFP+ + A +AL ++ G ++++F +
Sbjct: 58 LSDKGRLKHTAFATFPNEKTAVKALTRLHQLKLLGHTLVVEFAK 101
>sp|Q96IZ5|RBM41_HUMAN RNA-binding protein 41 OS=Homo sapiens GN=RBM41 PE=1 SV=2
Length = 413
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI +PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLV----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ E+A +AL+LVNGY GK ++I+FG+N
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKN 387
>sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1
Length = 413
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 46 FATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI 105
F +E++ +L EEI ++PMF +Y G P VLY+KNL+ V D SLF
Sbjct: 277 FIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLI----SLFARF 332
Query: 106 DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
K M GRMRGQAF+TFP+ ++A +AL+ +NGY GK ++I+F ++
Sbjct: 333 QEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKS 387
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1
Length = 249
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P K + P+ LYI+N+ + + I LFGS + V+ + RMRGQ
Sbjct: 14 PSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKV---IDVQARKTLRMRGQ 70
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRN 160
AFV F ++E A RAL + GY GKPM+IQ+ ++
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKS 105
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRM----RGQAFVTFP 131
P VL ++N+ ++V D IF + G QE RM RG AFV +
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSG-------------FQEVRMVPGRRGIAFVEYD 218
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGR 159
S A A N G G + + F R
Sbjct: 219 SDREATVAKNGTTGMSLSGNQIKVTFAR 246
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3 SV=2
Length = 115
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137
S+L+IKNL+ + ++ + +FG +G + + G TV+ RG AFV + +V+ A
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGR-YGPVRQIRLGNTVQ------TRGTAFVVYENVQDAR 64
Query: 138 RALNLVNGYVFKGKPMIIQFGRNPAAAK 165
RA ++GY F + +++ + NP AK
Sbjct: 65 RACEKLSGYNFMDRYLVVHY-YNPERAK 91
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRSLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A AL + G+ F KPM IQ+ +
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKT 89
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LYIKNL D I D+ S FGSI +AK ++++GR +G FV F S E A +A
Sbjct: 296 LYIKNL-DDTIDDEKLRKEFSPFGSITSAKV-----MLEDGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVGSKPLYV 365
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN ++V + +F S FG L+VK+M++ G+ +G FV++ E A+
Sbjct: 193 VYIKNFGEEVDDESLKELF-SQFGKT------LSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 138 RALNLVNGYVFKGKPMIIQFGR 159
+A+ +NG GK II GR
Sbjct: 246 KAVEEMNGKEISGK--IIFVGR 265
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
A+ P + LY+ +L DV + F + C + M R G A+V F
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVC----RDMITRRSLGYAYVNFQ 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRK 95
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----VFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
AFV F + E A +A+ +NG + + + +
Sbjct: 141 AFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 67 MFKNYAAGNPASV-LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRM 122
M N GN + LY+ +L ++ D IF FG ID + LM++ GR
Sbjct: 251 MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIF-EPFGKID------NIVLMKDSDTGRS 303
Query: 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155
+G F+TF E A RAL +NG+ G+PM +
Sbjct: 304 KGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P + +YI NL KD + + IF S FG I L + + + +MRGQAFV F
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRNLKMRGQAFVIFK 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 61 ETSSATNALRSMQGFPFYDKPMRIQYSKT 89
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 79 VLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
+YI NL KD + + IF S FG I L + + + +MRGQAFV F V
Sbjct: 17 TIYINNLNEKIKKDELKKSLYAIF-SQFGQI------LDILVSRIMKMRGQAFVIFKEVT 69
Query: 135 LAHRALNLVNGYVFKGKPMIIQFGRN 160
A AL + G+ F KPM IQ+ +
Sbjct: 70 SATNALRSMQGFPFYDKPMRIQYAKT 95
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD I S +G+I +AK V +EGR +G FV F + A A
Sbjct: 289 LYVKNL-DDTIDDDRLRIAFSPYGNITSAK----VMTDEEGRSKGFGFVCFNAASEATCA 343
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG V KP+ +
Sbjct: 344 VTELNGRVVGSKPLYV 359
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL + + + F S FG+I + K V ++G +G
Sbjct: 82 PSLRRSGVGN----VFIKNLDRAIDNKAIYDTF-SAFGNILSCK----VATDEKGNSKGY 132
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A+ +++ VNG + GK + +
Sbjct: 133 GFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKAFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN +++KNL K I + + S FG+I C + + E +G
Sbjct: 91 PSLRKSGVGN----IFVKNLDKS-INNKALYDTVSAFGNI--LSCNV---VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + G+ + +
Sbjct: 141 GFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ---AFVTFPS 132
P + LY+ +L DV + F S G I L++++ ++ G A+V F
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKF-SPAGPI------LSIRICRDLITSGSSNYAYVNFQH 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
+ A AL+ +N V KGKP+ I + R+P+ K
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L D + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L DV + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKDLFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L DV + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L DV + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ S FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFSPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM--QEGRMRGQAFVTFPSVELAH 137
+YIKN +D+ + +FG FG L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGEDMDDERLKELFGK-FGP------ALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDEMNGKELNGKQIYV 263
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L DV + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 11/93 (11%)
Query: 76 PASVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
P LY+ NL +K + + +F S +G I L + + +MRGQAF+ F
Sbjct: 10 PNQTLYVNNLYEKISKKKLIEQLLLLF-SKYGPI------LEIVGSKSLKMRGQAFIVFK 62
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFGRNPAAA 164
+ A AL +NG+ F +PM IQ+ ++ + A
Sbjct: 63 DITSASNALREMNGFNFLDRPMKIQYCKSKSDA 95
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ + FGSI +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFTPFGSITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN +D+ DD FG AA L+VK+M + G+ RG FV+F E A
Sbjct: 193 VYIKNFGEDM--DDERL--KEWFGQYGAA---LSVKVMTDDHGKSRGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK + +
Sbjct: 246 KAVDDMNGKDLNGKAIFV 263
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA++ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L DV + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KGKP+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGKPVRIMWSQRDPSLRK 95
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YI N+ + ++ +LF + +K M +MRGQAFV F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM---KMRGQAFVIFKELGS 61
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
+ AL + G+ F GKPM IQ+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAK 85
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN+ +V ++F +F + FG + ++ ++ QEG+ RG FV F + E A +A
Sbjct: 243 VYVKNINNEVTDEEFRELF-AKFGEVTSS----SLARDQEGKSRGFGFVNFTTHEAAAQA 297
Query: 140 LNLVNGYVFKGKPMII 155
++ +NG F+G+ + +
Sbjct: 298 VDELNGKDFRGQDLYV 313
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YI+NL + + ++ + S FG I L V ++ ++RGQA+VTF
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRI------LDVVALKTPKLRGQAWVTFSE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGR 159
V A A+ + + F KPM +Q+ +
Sbjct: 62 VTAAGHAVRQMQNFPFYDKPMRLQYAK 88
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM---QEGRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG I+ +++LM + GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGRIE------SIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 137 HRALNLVNGYVFKGKPMII 155
+AL +NG+ G+PM +
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM---QEGRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG I+ +++LM + GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGRIE------SIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 137 HRALNLVNGYVFKGKPMII 155
+AL +NG+ G+PM +
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+YIKN+ +DV ++F +F FG I +A T+ QEG+ RG FV F + E A A
Sbjct: 232 VYIKNIDQDVTEEEFRELF-EKFGEITSA----TLSRDQEGKSRGFGFVNFSTHESAQAA 286
Query: 140 LNLVN 144
++ +N
Sbjct: 287 VDEMN 291
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
++ LY+ L V + +F S+ SI + +T + + G A+V + +
Sbjct: 48 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSL------GYAYVNYNNTA 101
Query: 135 LAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
RAL +N + KGKP I + R+PA K
Sbjct: 102 DGERALEDLNYTLIKGKPCRIMWSQRDPALRK 133
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM---QEGRMRGQAFVTFPSVELA 136
LY+ +L ++ D IF FG I+ +++LM + GR +G F+TF E A
Sbjct: 252 LYVGSLHFNITEDMLRGIF-EPFGRIE------SIQLMMDSETGRSKGYGFITFSDSECA 304
Query: 137 HRALNLVNGYVFKGKPMII 155
+AL +NG+ G+PM +
Sbjct: 305 KKALEQLNGFELAGRPMKV 323
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I D+ FG+I +AK +M+ GR +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDERLRKEFLPFGTITSAKV-----MMEGGRSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE--GRMRGQAFVTFPSVELAH 137
+YIKN D+ + +FG +G L+VK+M + G+ +G FV+F E A
Sbjct: 193 VYIKNFGDDMNDERLKEMFGK-YGP------ALSVKVMTDDNGKSKGFGFVSFERHEDAQ 245
Query: 138 RALNLVNGYVFKGKPMII 155
+A++ +NG GK M +
Sbjct: 246 KAVDEMNGKDMNGKSMFV 263
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL K + + F S FG+I + K + E +G
Sbjct: 91 PSLRKSGVGN----IFIKNLDKSIDNKALYDTF-SAFGNILSCKV-----VCDENGSKGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A RA++ +NG + + + +
Sbjct: 141 GFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P + LY+ +L +DV + F + C + M R G A+V F
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVC----RDMITRRSLGYAYVNFQQPAD 64
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KG+P+ I + R+P+ K
Sbjct: 65 AERALDTMNFDVIKGRPVRIMWSQRDPSLRK 95
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+YIKN+ ++V ++F +F FG I +A T+ QEG+ RG FV F + + A A
Sbjct: 235 VYIKNIDQEVTDEEFRKMF-EKFGEITSA----TLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 140 LNLVNGYVFKGKPMII 155
++ +N KG+ + +
Sbjct: 290 VDEMNDKEIKGQKLYV 305
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+YIKN+ ++V ++F +F FG I +A T+ QEG+ RG FV F + + A A
Sbjct: 235 VYIKNIDQEVTDEEFRKMF-EKFGEITSA----TLSRDQEGKSRGFGFVNFSTHDSAQAA 289
Query: 140 LNLVNGYVFKGKPMII 155
++ +N KG+ + +
Sbjct: 290 VDEMNDKEIKGQKLYV 305
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCG--LTVKLM---QEGRMRGQAFVTF 130
P+ +++ NL+ + DD FG CG +++L Q GR++G +VTF
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGG---------CGDIQSIRLPTDPQSGRLKGFGYVTF 414
Query: 131 PSVELAHRALNLVNGYVFKGKPMIIQF 157
++ A + + + NG+ G+P + F
Sbjct: 415 SDIDSAKKCVEM-NGHFIAGRPCRLDF 440
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KNLA+ DD FG +G I +A V EG+ +G FV F + + A RA
Sbjct: 217 VYVKNLAESTTDDDLKNAFGE-YGKITSA----VVMKDGEGKSKGFGFVNFENADDAARA 271
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG+ F K +
Sbjct: 272 VESLNGHKFDDKEWYV 287
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +A++ +NG V KP+ + G+
Sbjct: 354 ATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+YIKNL +++ ++F +F FG I +A T+ QEG+ RG FV + + + A A
Sbjct: 231 VYIKNLDQEISEEEFRQMF-EKFGEITSA----TLSRDQEGKSRGFGFVNYSTHDSAQAA 285
Query: 140 LNLVNGYVFKGKPMII 155
++ +N KG+ + +
Sbjct: 286 VDEMNDKEVKGQKLYV 301
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
LY+KNL D I DD S +G+I +AK + + G +G FV F S E A +A
Sbjct: 296 LYVKNL-DDGIDDDRLRKEFSPYGTITSAKV-----MTEGGHSKGFGFVCFSSPEEATKA 349
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + KP+ +
Sbjct: 350 VTEMNGRIVSTKPLYV 365
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL + + + F S FG+I + K + E RG
Sbjct: 91 PGLRKSGVGN----VFIKNLDESIDNKALYDTF-SAFGNILSCKV-----VCDEHGSRGY 140
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F + E A+RA+ +NG + + + +
Sbjct: 141 GFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFP 131
AG P + LY+ +L DV + F S G I + + + + R G A++ F
Sbjct: 5 GAGYPLASLYVGDLHPDVTEAMLYEKF-SPAGPIMSIRV---CRDIATRRSLGYAYINFQ 60
Query: 132 SVELAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
A RAL+ +N V KG+P+ I + R+P K
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRK 95
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+YIKNL ++ +F +FG FG I + L++ Q + RG FV + + E A +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQ-FGEITS----LSLVKDQNDKPRGFGFVNYANHECAQKA 317
Query: 140 LNLVNGYVFKGKPMII 155
++ +N +KGK + +
Sbjct: 318 VDELNDKEYKGKKLYV 333
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 66 PMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ 125
P + GN ++IKNL + F S FG I + K V + + G +G
Sbjct: 160 PSLRKMGTGN----VFIKNLDPAIDNKALHDTF-SAFGKILSCK----VAVDELGNAKGY 210
Query: 126 AFVTFPSVELAHRALNLVNGYVFKGKPMII 155
FV F SVE A+ A+ VNG + K + +
Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSL--FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134
++ LY+ L V F +F S+ SI + +T + + G A+V F ++E
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSL------GYAYVNFHNME 132
Query: 135 LAHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
+AL+ +N + KG+P I + R+P+ K
Sbjct: 133 DGEKALDELNYTLIKGRPCRIMWSQRDPSLRK 164
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVEL 135
P +YIKNL + + + F S FGSI AK +M+ G+ +G V F S E
Sbjct: 300 PGVPIYIKNLDETINDEKLKEEFSS-FGSISRAKV-----MMEVGQGKGFGVVCFSSFEE 353
Query: 136 AHRALNLVNGYVFKGKPMIIQFGR 159
A +A++ +NG + KP+ + G+
Sbjct: 354 ATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
++IKNL K + F++F S FG+I + K + + +G A+V F S+ A+RA
Sbjct: 108 IFIKNLDKSIDNRALFYLF-SAFGNILSCKV-----VCDDNGSKGYAYVHFDSLAAANRA 161
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG + + +
Sbjct: 162 IWHMNGVRLNNRQVYV 177
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHR 138
+LYIKNL + ++ + IFG FG++ + G T + RG AFV + + A
Sbjct: 20 ILYIKNLPYKITTEEMYEIFGK-FGAVRQIRVGNTAE------TRGTAFVVYEDIFDAKT 72
Query: 139 ALNLVNGYVFKGKPMIIQFGRNPAAAK 165
A ++GY + +++ + + A K
Sbjct: 73 ACEHLSGYNVSNRYLVVLYYQATKAWK 99
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRA 139
+Y+KN++ + ++F +F +G + ++ ++ EG+ RG FV F + E A +A
Sbjct: 248 IYVKNISLEATDEEFRDLFAK-YGDVTSS----SLARDSEGKSRGFGFVNFTTHECAAKA 302
Query: 140 LNLVNGYVFKGKPMII 155
+ +NG F+G+ + +
Sbjct: 303 VEELNGKEFRGQDLYV 318
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK-CGLTVKLMQEGRMRGQAFVTFPSVEL 135
++ LY+ L V F +F S GS+ + + C T+ R G A+V + S
Sbjct: 64 SASLYVGELDPSVTEAMLFELF-SQIGSVASIRVCRDTITR----RSLGYAYVNYNSTSD 118
Query: 136 AHRALNLVNGYVFKGKPMIIQFG-RNPAAAK 165
+AL +N + KG+P I + R+PA K
Sbjct: 119 GEKALEELNYTLIKGRPCRIMWSQRDPALRK 149
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 76 PASVLYIKNLAKDVIPDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132
P +YIK++ + + ++ + S FG + L V ++ ++RGQA+V F
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRL------LDVVALKTPKLRGQAWVVFTE 61
Query: 133 VELAHRALNLVNGYVFKGKPMIIQFGRN 160
V A A+ + + F KPM IQ+ ++
Sbjct: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKS 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,620,833
Number of Sequences: 539616
Number of extensions: 2724628
Number of successful extensions: 9884
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 9550
Number of HSP's gapped (non-prelim): 445
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)