Query 039336
Match_columns 167
No_of_seqs 231 out of 1986
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 5.3E-20 1.1E-24 132.3 11.8 85 75-163 32-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2E-19 4.4E-24 145.8 11.7 84 76-163 268-351 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.4E-18 7.4E-23 138.6 11.4 84 76-163 2-85 (352)
4 PF00076 RRM_1: RNA recognitio 99.8 1.2E-17 2.6E-22 104.7 9.6 70 80-154 1-70 (70)
5 TIGR01659 sex-lethal sex-letha 99.7 1.8E-17 3.9E-22 134.5 10.9 84 74-161 104-187 (346)
6 KOG0127 Nucleolar protein fibr 99.7 4E-17 8.6E-22 135.1 10.3 86 75-164 290-381 (678)
7 KOG0122 Translation initiation 99.7 1.8E-16 4E-21 119.8 9.1 82 76-161 188-269 (270)
8 TIGR01645 half-pint poly-U bin 99.7 3.2E-16 7E-21 134.2 11.5 85 76-164 203-287 (612)
9 TIGR01645 half-pint poly-U bin 99.7 2.5E-16 5.4E-21 134.8 10.2 82 75-160 105-186 (612)
10 TIGR01659 sex-lethal sex-letha 99.7 6.4E-16 1.4E-20 125.4 11.0 85 76-164 192-278 (346)
11 PF14259 RRM_6: RNA recognitio 99.7 1.1E-15 2.5E-20 96.2 9.5 70 80-154 1-70 (70)
12 KOG0121 Nuclear cap-binding pr 99.7 2.7E-16 5.9E-21 108.4 6.9 81 75-159 34-114 (153)
13 KOG0114 Predicted RNA-binding 99.7 1.2E-15 2.5E-20 101.6 9.2 79 75-160 16-94 (124)
14 PLN03120 nucleic acid binding 99.7 1E-15 2.2E-20 118.2 10.3 75 77-159 4-78 (260)
15 KOG0113 U1 small nuclear ribon 99.6 1.8E-15 3.9E-20 117.3 10.7 85 73-161 97-181 (335)
16 KOG0149 Predicted RNA-binding 99.6 4.7E-16 1E-20 117.1 7.1 77 78-159 13-89 (247)
17 TIGR01628 PABP-1234 polyadenyl 99.6 8.1E-16 1.7E-20 132.2 9.3 84 75-163 283-366 (562)
18 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-15 3.3E-20 130.5 11.0 80 79-162 2-81 (562)
19 KOG0148 Apoptosis-promoting RN 99.6 6.8E-16 1.5E-20 118.4 7.4 81 78-162 63-143 (321)
20 KOG4206 Spliceosomal protein s 99.6 1.1E-15 2.4E-20 114.6 8.3 85 73-164 5-93 (221)
21 TIGR01622 SF-CC1 splicing fact 99.6 2.2E-15 4.9E-20 126.3 10.8 79 77-159 186-264 (457)
22 KOG0107 Alternative splicing f 99.6 1.8E-15 3.9E-20 109.4 8.7 78 76-162 9-86 (195)
23 PLN03213 repressor of silencin 99.6 1.7E-15 3.8E-20 124.5 9.7 77 76-160 9-87 (759)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4E-15 8.8E-20 126.2 12.0 81 76-160 294-374 (509)
25 KOG4207 Predicted splicing fac 99.6 1.2E-15 2.6E-20 113.1 7.5 79 78-160 14-92 (256)
26 KOG0125 Ataxin 2-binding prote 99.6 2.8E-15 6.1E-20 117.6 9.2 78 78-161 97-174 (376)
27 KOG0126 Predicted RNA-binding 99.6 9.6E-17 2.1E-21 116.7 0.8 80 76-159 34-113 (219)
28 KOG0148 Apoptosis-promoting RN 99.6 4.8E-15 1E-19 113.8 10.0 82 75-166 162-243 (321)
29 KOG0130 RNA-binding protein RB 99.6 3.2E-15 6.9E-20 104.1 7.2 85 74-162 69-153 (170)
30 TIGR01622 SF-CC1 splicing fact 99.6 8.4E-15 1.8E-19 122.8 10.9 82 74-160 86-167 (457)
31 KOG0111 Cyclophilin-type pepti 99.6 7.4E-16 1.6E-20 115.2 4.1 83 76-162 9-91 (298)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 9.6E-15 2.1E-19 123.5 11.0 77 76-162 1-79 (481)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.2E-14 2.6E-19 123.0 11.3 78 75-161 273-351 (481)
34 smart00362 RRM_2 RNA recogniti 99.6 2E-14 4.4E-19 89.3 9.3 72 79-156 1-72 (72)
35 KOG0146 RNA-binding protein ET 99.6 2E-15 4.3E-20 115.9 5.5 89 74-166 282-370 (371)
36 COG0724 RNA-binding proteins ( 99.6 1.5E-14 3.2E-19 111.1 10.4 79 77-159 115-193 (306)
37 PLN03121 nucleic acid binding 99.6 1.7E-14 3.6E-19 110.1 10.1 76 76-159 4-79 (243)
38 KOG0108 mRNA cleavage and poly 99.6 1.1E-14 2.3E-19 120.5 7.9 82 78-163 19-100 (435)
39 TIGR01648 hnRNP-R-Q heterogene 99.6 2.3E-14 5E-19 122.5 10.1 79 76-159 57-136 (578)
40 TIGR01648 hnRNP-R-Q heterogene 99.5 3.7E-14 8.1E-19 121.2 10.6 75 76-162 232-308 (578)
41 KOG0117 Heterogeneous nuclear 99.5 3.6E-14 7.8E-19 115.3 9.6 82 75-160 81-163 (506)
42 smart00360 RRM RNA recognition 99.5 5.7E-14 1.2E-18 86.8 8.4 71 82-156 1-71 (71)
43 KOG0145 RNA-binding protein EL 99.5 4E-14 8.8E-19 108.4 8.2 83 78-164 42-124 (360)
44 KOG0127 Nucleolar protein fibr 99.5 5.4E-14 1.2E-18 116.7 9.0 84 76-164 116-199 (678)
45 cd00590 RRM RRM (RNA recogniti 99.5 2.5E-13 5.5E-18 84.6 10.0 74 79-157 1-74 (74)
46 KOG0117 Heterogeneous nuclear 99.5 5.1E-14 1.1E-18 114.4 7.7 77 78-166 260-336 (506)
47 KOG0105 Alternative splicing f 99.5 5.7E-14 1.2E-18 102.7 6.8 81 74-161 3-83 (241)
48 KOG0145 RNA-binding protein EL 99.5 1.7E-13 3.6E-18 105.0 9.5 81 77-161 278-358 (360)
49 KOG0131 Splicing factor 3b, su 99.5 4.7E-14 1E-18 102.7 6.0 81 75-159 7-87 (203)
50 KOG0124 Polypyrimidine tract-b 99.5 2.9E-14 6.4E-19 113.6 4.5 77 78-158 114-190 (544)
51 PF13893 RRM_5: RNA recognitio 99.5 8.5E-13 1.8E-17 79.7 8.5 56 94-158 1-56 (56)
52 KOG0144 RNA-binding protein CU 99.4 1.4E-13 3.1E-18 111.5 6.0 83 77-164 124-209 (510)
53 KOG0415 Predicted peptidyl pro 99.4 5.9E-14 1.3E-18 111.4 3.7 90 70-163 232-321 (479)
54 smart00361 RRM_1 RNA recogniti 99.4 7.9E-13 1.7E-17 83.6 7.9 62 91-156 2-70 (70)
55 KOG0147 Transcriptional coacti 99.4 5E-13 1.1E-17 111.0 6.5 78 78-159 279-356 (549)
56 KOG0109 RNA-binding protein LA 99.4 1.3E-12 2.8E-17 101.4 6.3 73 79-163 4-76 (346)
57 KOG0131 Splicing factor 3b, su 99.3 2.3E-12 4.9E-17 94.0 6.5 85 75-162 94-178 (203)
58 KOG4208 Nucleolar RNA-binding 99.3 4.2E-12 9.1E-17 94.2 7.9 82 76-161 48-130 (214)
59 KOG4661 Hsp27-ERE-TATA-binding 99.3 1.4E-11 3.1E-16 103.1 10.5 86 77-166 405-490 (940)
60 KOG0123 Polyadenylate-binding 99.3 1.1E-11 2.4E-16 101.5 8.5 77 80-163 79-155 (369)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.7E-11 3.6E-16 104.1 9.7 84 75-159 407-500 (509)
62 KOG0109 RNA-binding protein LA 99.3 4.1E-12 9E-17 98.6 5.4 81 74-166 75-155 (346)
63 KOG0110 RNA-binding protein (R 99.3 3.4E-12 7.4E-17 108.7 5.0 82 77-162 613-694 (725)
64 KOG0144 RNA-binding protein CU 99.3 1.2E-11 2.6E-16 100.4 6.7 91 72-166 419-509 (510)
65 KOG0132 RNA polymerase II C-te 99.2 2.3E-11 4.9E-16 104.7 7.8 76 77-162 421-496 (894)
66 KOG4212 RNA-binding protein hn 99.2 4.1E-11 8.8E-16 97.7 8.7 77 77-157 44-120 (608)
67 KOG1457 RNA binding protein (c 99.2 1.5E-10 3.3E-15 87.1 9.2 87 77-166 34-123 (284)
68 KOG0110 RNA-binding protein (R 99.2 8E-11 1.7E-15 100.5 8.4 75 80-159 518-596 (725)
69 KOG0146 RNA-binding protein ET 99.1 5.2E-11 1.1E-15 91.8 5.3 83 76-163 18-103 (371)
70 KOG0153 Predicted RNA-binding 99.1 1.9E-10 4.1E-15 91.3 8.3 74 78-161 229-303 (377)
71 KOG0151 Predicted splicing reg 99.1 1.9E-10 4.2E-15 98.3 7.2 83 78-161 175-257 (877)
72 KOG0123 Polyadenylate-binding 99.1 2.2E-10 4.8E-15 93.8 5.8 85 74-163 267-351 (369)
73 KOG4212 RNA-binding protein hn 99.1 4.6E-10 9.9E-15 91.6 7.3 75 75-158 534-608 (608)
74 KOG0533 RRM motif-containing p 99.0 1.4E-09 2.9E-14 84.0 8.6 82 77-163 83-164 (243)
75 KOG0124 Polypyrimidine tract-b 99.0 8.4E-10 1.8E-14 88.4 6.9 81 78-162 211-291 (544)
76 PF04059 RRM_2: RNA recognitio 99.0 5.8E-09 1.3E-13 69.8 9.3 82 78-162 2-88 (97)
77 KOG1548 Transcription elongati 99.0 2.5E-09 5.5E-14 84.9 8.2 85 76-161 133-221 (382)
78 KOG4205 RNA-binding protein mu 99.0 5.7E-10 1.2E-14 89.1 4.5 83 76-163 5-87 (311)
79 KOG0116 RasGAP SH3 binding pro 99.0 3.3E-09 7.2E-14 87.7 8.6 80 77-161 288-367 (419)
80 KOG0226 RNA-binding proteins [ 98.9 1.5E-09 3.3E-14 83.0 4.8 77 77-157 190-266 (290)
81 KOG4660 Protein Mei2, essentia 98.8 4.4E-09 9.5E-14 88.0 4.1 70 76-154 74-143 (549)
82 KOG4205 RNA-binding protein mu 98.8 1.1E-08 2.3E-13 81.8 5.8 84 76-164 96-179 (311)
83 KOG4209 Splicing factor RNPS1, 98.7 2.2E-08 4.7E-13 77.2 5.9 82 75-161 99-180 (231)
84 KOG0106 Alternative splicing f 98.7 2E-08 4.3E-13 76.1 4.3 70 79-160 3-72 (216)
85 KOG0120 Splicing factor U2AF, 98.6 5.1E-08 1.1E-12 81.9 3.7 80 77-160 289-368 (500)
86 KOG4454 RNA binding protein (R 98.5 3.8E-08 8.2E-13 74.1 2.3 81 75-161 7-87 (267)
87 PF11608 Limkain-b1: Limkain b 98.5 5.9E-07 1.3E-11 58.0 7.4 69 78-159 3-75 (90)
88 KOG1190 Polypyrimidine tract-b 98.5 4.9E-07 1.1E-11 73.6 8.1 76 77-161 297-373 (492)
89 KOG1457 RNA binding protein (c 98.4 2.5E-07 5.3E-12 70.0 4.2 68 74-149 207-274 (284)
90 KOG4206 Spliceosomal protein s 98.4 1.8E-06 4E-11 65.2 7.8 79 72-159 141-220 (221)
91 KOG1995 Conserved Zn-finger pr 98.3 6.6E-07 1.4E-11 71.6 4.1 87 75-162 64-155 (351)
92 KOG0147 Transcriptional coacti 98.3 1.6E-07 3.4E-12 78.7 0.5 77 78-159 180-256 (549)
93 KOG4211 Splicing factor hnRNP- 98.3 3.5E-06 7.7E-11 70.0 8.0 75 77-159 10-84 (510)
94 KOG3152 TBP-binding protein, a 98.2 1.2E-06 2.7E-11 67.3 3.7 74 78-152 75-157 (278)
95 KOG4211 Splicing factor hnRNP- 98.2 7.7E-06 1.7E-10 68.0 8.0 78 76-158 102-179 (510)
96 KOG4210 Nuclear localization s 98.2 1.3E-06 2.8E-11 69.5 3.0 81 78-163 185-266 (285)
97 KOG1190 Polypyrimidine tract-b 98.0 1.4E-05 3E-10 65.3 6.8 86 67-160 403-490 (492)
98 KOG0120 Splicing factor U2AF, 98.0 1.8E-05 3.9E-10 66.8 7.1 85 71-159 393-490 (500)
99 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4.2E-10 53.7 5.8 71 77-157 1-76 (105)
100 KOG0106 Alternative splicing f 98.0 6.2E-06 1.3E-10 62.6 3.4 71 76-158 98-168 (216)
101 KOG4307 RNA binding protein RB 97.9 5.2E-05 1.1E-09 65.7 8.4 77 76-157 865-943 (944)
102 KOG1548 Transcription elongati 97.9 7.7E-05 1.7E-09 59.8 7.9 79 75-161 263-352 (382)
103 COG5175 MOT2 Transcriptional r 97.9 4.5E-05 9.8E-10 61.1 6.4 81 77-160 114-202 (480)
104 KOG2314 Translation initiation 97.8 8.1E-05 1.8E-09 63.1 8.0 75 77-157 58-140 (698)
105 KOG2202 U2 snRNP splicing fact 97.7 1.9E-05 4E-10 60.9 2.3 63 92-158 83-145 (260)
106 KOG2416 Acinus (induces apopto 97.7 6.3E-05 1.4E-09 64.1 5.5 79 73-160 440-521 (718)
107 KOG1365 RNA-binding protein Fu 97.7 8E-05 1.7E-09 60.6 5.0 80 77-158 280-359 (508)
108 KOG2193 IGF-II mRNA-binding pr 97.6 7.9E-05 1.7E-09 61.3 4.1 73 79-161 3-76 (584)
109 KOG1456 Heterogeneous nuclear 97.6 0.00071 1.5E-08 55.0 9.2 81 72-161 282-363 (494)
110 KOG0112 Large RNA-binding prot 97.5 9.6E-05 2.1E-09 65.6 4.5 78 74-161 452-531 (975)
111 KOG0129 Predicted RNA-binding 97.5 0.00029 6.4E-09 59.1 7.0 69 71-142 364-432 (520)
112 KOG4676 Splicing factor, argin 97.5 0.00014 3E-09 59.3 4.7 78 79-158 9-86 (479)
113 PF08952 DUF1866: Domain of un 97.5 0.00074 1.6E-08 48.3 7.8 76 74-162 24-108 (146)
114 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.0011 2.4E-08 44.6 7.0 78 78-158 7-89 (100)
115 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00071 1.5E-08 40.2 5.1 52 78-140 2-53 (53)
116 KOG0129 Predicted RNA-binding 97.3 0.0016 3.5E-08 54.8 8.7 67 76-144 258-327 (520)
117 KOG1456 Heterogeneous nuclear 97.3 0.0017 3.6E-08 53.0 8.4 81 72-161 115-199 (494)
118 KOG4849 mRNA cleavage factor I 97.3 0.0003 6.5E-09 56.7 3.8 74 78-155 81-156 (498)
119 KOG1365 RNA-binding protein Fu 97.2 0.00048 1E-08 56.2 4.4 67 79-151 163-233 (508)
120 KOG0128 RNA-binding protein SA 97.1 0.00027 5.9E-09 62.5 2.1 77 78-159 737-813 (881)
121 PF15023 DUF4523: Protein of u 97.0 0.0044 9.4E-08 44.2 7.3 73 74-158 83-159 (166)
122 KOG0128 RNA-binding protein SA 96.9 6.5E-05 1.4E-09 66.2 -3.5 64 78-145 668-731 (881)
123 KOG1855 Predicted RNA-binding 96.8 0.0013 2.9E-08 54.2 3.9 68 76-144 230-307 (484)
124 KOG1996 mRNA splicing factor [ 96.7 0.0057 1.2E-07 48.4 6.7 64 93-159 302-365 (378)
125 KOG0115 RNA-binding protein p5 96.7 0.0025 5.4E-08 49.4 4.1 74 78-156 32-109 (275)
126 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0065 1.4E-07 45.1 5.6 83 76-160 6-97 (176)
127 PF08675 RNA_bind: RNA binding 96.4 0.019 4.2E-07 37.2 6.4 54 78-144 10-63 (87)
128 KOG4660 Protein Mei2, essentia 96.4 0.0064 1.4E-07 51.7 5.1 84 75-161 386-473 (549)
129 KOG4307 RNA binding protein RB 96.3 0.0029 6.3E-08 55.3 2.8 78 75-157 432-510 (944)
130 PF07576 BRAP2: BRCA1-associat 96.1 0.085 1.8E-06 36.1 8.7 67 78-149 13-80 (110)
131 KOG2068 MOT2 transcription fac 96.1 0.0021 4.6E-08 51.5 0.8 83 78-161 78-163 (327)
132 KOG0112 Large RNA-binding prot 96.0 0.0015 3.2E-08 58.3 -0.3 79 75-158 370-448 (975)
133 PF10309 DUF2414: Protein of u 96.0 0.051 1.1E-06 33.2 6.3 54 78-143 6-62 (62)
134 PF11767 SET_assoc: Histone ly 95.9 0.038 8.3E-07 34.3 5.7 55 88-155 11-65 (66)
135 PF04847 Calcipressin: Calcipr 95.3 0.074 1.6E-06 39.7 6.3 61 90-160 8-70 (184)
136 KOG0105 Alternative splicing f 95.2 0.086 1.9E-06 39.3 6.2 61 78-149 116-176 (241)
137 KOG2253 U1 snRNP complex, subu 95.0 0.022 4.8E-07 49.5 3.3 76 69-157 32-107 (668)
138 KOG2318 Uncharacterized conser 94.9 0.19 4.1E-06 43.4 8.4 82 74-156 171-301 (650)
139 KOG2135 Proteins containing th 94.0 0.039 8.4E-07 46.4 2.3 72 78-160 373-445 (526)
140 KOG4210 Nuclear localization s 93.9 0.093 2E-06 41.9 4.2 80 76-159 87-166 (285)
141 KOG0804 Cytoplasmic Zn-finger 93.7 0.31 6.8E-06 40.9 7.0 69 77-150 74-142 (493)
142 KOG4574 RNA-binding protein (c 93.7 0.052 1.1E-06 48.6 2.7 72 80-161 301-374 (1007)
143 KOG4285 Mitotic phosphoprotein 93.0 0.28 6.2E-06 39.2 5.5 61 80-152 200-260 (350)
144 PF03880 DbpA: DbpA RNA bindin 92.9 0.57 1.2E-05 29.4 6.0 71 79-158 2-74 (74)
145 KOG4483 Uncharacterized conser 91.0 0.35 7.7E-06 40.1 4.2 65 77-152 391-455 (528)
146 KOG2591 c-Mpl binding protein, 90.7 0.51 1.1E-05 40.8 4.9 69 77-155 175-246 (684)
147 KOG4676 Splicing factor, argin 87.5 0.093 2E-06 43.3 -1.5 63 78-149 152-214 (479)
148 KOG4410 5-formyltetrahydrofola 85.5 1.7 3.6E-05 34.7 4.5 47 78-133 331-377 (396)
149 KOG2193 IGF-II mRNA-binding pr 77.3 0.18 3.8E-06 42.2 -3.6 74 78-158 81-154 (584)
150 KOG3424 40S ribosomal protein 75.1 11 0.00025 26.0 5.2 50 88-138 34-84 (132)
151 KOG4454 RNA binding protein (R 74.8 0.81 1.8E-05 35.1 -0.4 66 78-148 81-150 (267)
152 KOG2891 Surface glycoprotein [ 66.0 9.5 0.00021 30.5 3.8 87 72-161 144-268 (445)
153 PRK01178 rps24e 30S ribosomal 64.6 24 0.00053 23.6 5.1 50 88-138 30-80 (99)
154 COG0724 RNA-binding proteins ( 63.6 11 0.00025 28.0 3.9 73 74-150 222-294 (306)
155 COG5638 Uncharacterized conser 62.5 33 0.00072 29.0 6.4 26 125-150 260-285 (622)
156 PF03468 XS: XS domain; Inter 61.9 11 0.00023 26.0 3.1 48 79-133 10-66 (116)
157 PF10567 Nab6_mRNP_bdg: RNA-re 61.6 29 0.00063 27.9 5.7 82 77-159 15-106 (309)
158 PF15513 DUF4651: Domain of un 58.1 24 0.00052 21.5 3.7 17 92-109 9-25 (62)
159 PTZ00071 40S ribosomal protein 57.9 43 0.00094 23.6 5.5 50 88-138 35-86 (132)
160 KOG1295 Nonsense-mediated deca 57.7 15 0.00032 30.5 3.6 69 78-148 8-77 (376)
161 KOG4365 Uncharacterized conser 52.5 2.2 4.7E-05 36.1 -1.9 79 78-161 4-82 (572)
162 KOG2187 tRNA uracil-5-methyltr 45.9 24 0.00052 30.6 3.2 41 121-161 61-101 (534)
163 KOG2295 C2H2 Zn-finger protein 45.9 3 6.5E-05 36.2 -2.1 74 76-153 230-303 (648)
164 PF03439 Spt5-NGN: Early trans 45.8 41 0.00088 21.5 3.7 29 120-148 41-69 (84)
165 COG2004 RPS24A Ribosomal prote 42.1 90 0.0019 21.2 4.9 51 87-138 30-81 (107)
166 KOG4019 Calcineurin-mediated s 41.8 46 0.001 24.9 3.8 38 122-159 50-88 (193)
167 KOG0862 Synaptobrevin/VAMP-lik 40.8 28 0.00062 26.6 2.6 31 92-133 89-119 (216)
168 PF01282 Ribosomal_S24e: Ribos 39.9 1E+02 0.0022 19.8 6.1 51 87-138 11-62 (84)
169 PF11823 DUF3343: Protein of u 37.5 50 0.0011 20.3 3.0 25 124-148 2-26 (73)
170 PF13689 DUF4154: Domain of un 33.3 1.3E+02 0.0029 21.0 5.1 38 121-159 24-61 (145)
171 PF08206 OB_RNB: Ribonuclease 32.0 34 0.00074 20.1 1.5 12 121-132 6-17 (58)
172 KOG4008 rRNA processing protei 31.1 50 0.0011 25.8 2.6 32 75-107 38-69 (261)
173 PF14893 PNMA: PNMA 29.9 53 0.0011 26.9 2.8 28 72-99 13-40 (331)
174 PF11411 DNA_ligase_IV: DNA li 29.1 42 0.00092 18.1 1.4 13 88-100 20-32 (36)
175 COG0150 PurM Phosphoribosylami 28.0 30 0.00065 28.4 1.0 48 91-146 275-322 (345)
176 KOG0156 Cytochrome P450 CYP2 s 25.5 2.2E+02 0.0048 24.6 5.9 69 70-153 26-97 (489)
177 smart00738 NGN In Spt5p, this 24.8 1.4E+02 0.003 19.3 3.7 24 124-147 60-83 (106)
178 COG5594 Uncharacterized integr 24.7 90 0.0019 28.8 3.4 37 122-159 356-392 (827)
179 PF07292 NID: Nmi/IFP 35 domai 24.5 1.8E+02 0.004 18.9 4.1 31 126-157 1-33 (88)
180 cd00027 BRCT Breast Cancer Sup 24.0 1.4E+02 0.0031 16.7 3.4 27 78-105 2-28 (72)
181 PF09707 Cas_Cas2CT1978: CRISP 22.9 1.7E+02 0.0037 19.0 3.7 48 78-132 26-73 (86)
182 PF00976 ACTH_domain: Corticot 22.7 63 0.0014 17.6 1.3 11 2-12 12-22 (39)
183 PF14812 PBP1_TM: Transmembran 22.1 30 0.00064 22.3 0.0 9 2-10 8-16 (81)
184 TIGR01873 cas_CT1978 CRISPR-as 21.5 1.2E+02 0.0025 19.9 2.7 46 78-132 26-74 (87)
185 COG0002 ArgC Acetylglutamate s 21.0 1.9E+02 0.0041 24.0 4.4 31 79-110 248-278 (349)
186 KOG4213 RNA-binding protein La 20.8 2.9E+02 0.0064 20.8 4.9 21 121-141 148-168 (205)
187 COG0030 KsgA Dimethyladenosine 20.7 1.5E+02 0.0034 23.4 3.7 23 78-100 96-118 (259)
188 PRK11230 glycolate oxidase sub 20.6 4.1E+02 0.009 23.0 6.7 49 92-144 204-255 (499)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=5.3e-20 Score=132.26 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=77.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
..+++|||+|||+.+++++|+++|.+ ||.|..+.++. +..+++++|||||+|.+.++|+.|+..|||..|.|++|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~---d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIV---DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34678999999999999999999999 99999988753 367899999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 039336 155 IQFGRNPAA 163 (167)
Q Consensus 155 v~~a~~~~~ 163 (167)
|+++..+..
T Consensus 108 V~~a~~~~~ 116 (144)
T PLN03134 108 VNPANDRPS 116 (144)
T ss_pred EEeCCcCCC
Confidence 999986654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=2e-19 Score=145.79 Aligned_cols=84 Identities=23% Similarity=0.413 Sum_probs=76.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+++|||+|||+.+++++|+++|++ ||.|.+++++. +..+|.+||||||+|.+.++|.+||..|||..|+||.|+|
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~---d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIR---DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeE---cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3457999999999999999999999 99999998753 3568999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
+|+.++..
T Consensus 344 ~~~~~~~~ 351 (352)
T TIGR01661 344 SFKTNKAY 351 (352)
T ss_pred EEccCCCC
Confidence 99988753
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=3.4e-18 Score=138.63 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=76.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+.++|||+|||+.+++++|+.+|++ ||.|..|+++. +..+|+++|||||+|.+.++|.+||..|||..|.|++|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~-~G~i~~v~i~~---d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTS-IGEIESCKLVR---DKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHc-cCCEEEEEEEE---cCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 3578999999999999999999999 99999998753 3668999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
.|+++...
T Consensus 78 ~~a~~~~~ 85 (352)
T TIGR01661 78 SYARPSSD 85 (352)
T ss_pred Eeeccccc
Confidence 99986653
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=1.2e-17 Score=104.75 Aligned_cols=70 Identities=36% Similarity=0.556 Sum_probs=64.7
Q ss_pred EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 80 lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
|||+|||+.+++++|+.+|++ ||.+..+.+.. ..++..+|||||+|.+.++|..|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~----~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMR----NSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEE----ETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccc----cccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 99998877542 26889999999999999999999999999999999986
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.8e-17 Score=134.47 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=76.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
....++|||+|||+++|+++|+.+|.. ||.|..|+++. +..+++++|||||+|.+.++|.+||..|||..|.+++|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~---d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMR---DYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---cCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 345689999999999999999999999 99999998753 36689999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
+|.+++..
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998754
No 6
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=4e-17 Score=135.07 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=76.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-cee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV-----NG-YVF 148 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l-----~g-~~l 148 (167)
..+.+|||+|||+++|+++|...|++ ||.|.++.++ .+..||+++|+|||.|.+...|+.||.+. .| ..|
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV---~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIV---KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHh-hccceeEEEE---eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 34589999999999999999999999 9999998864 45889999999999999999999999877 24 678
Q ss_pred CCeeeEEEeecCCCCC
Q 039336 149 KGKPMIIQFGRNPAAA 164 (167)
Q Consensus 149 ~gr~l~v~~a~~~~~~ 164 (167)
.||.|.|..|.++.++
T Consensus 366 ~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRKEA 381 (678)
T ss_pred eccEEeeeeccchHHH
Confidence 9999999999887654
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.8e-16 Score=119.84 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=76.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..++|-|.|||.++++++|.++|.+ ||.|..+.+. ++..||.+||||||+|.+.++|.+||..|||+-+.+-.|+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvyla---rdK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLA---RDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeEEE---EccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 4578999999999999999999999 9999998874 55889999999999999999999999999999999999999
Q ss_pred EeecCC
Q 039336 156 QFGRNP 161 (167)
Q Consensus 156 ~~a~~~ 161 (167)
+|++++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999976
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=3.2e-16 Score=134.17 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=76.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..++|||+|||+.+++++|+.+|+. ||.|.++++.. ...+|++||||||+|.+.++|..|+..|||+.|+|+.|+|
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~---D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEe---cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3478999999999999999999999 99999998653 3567899999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 039336 156 QFGRNPAAA 164 (167)
Q Consensus 156 ~~a~~~~~~ 164 (167)
.+|.+....
T Consensus 279 ~kAi~pP~~ 287 (612)
T TIGR01645 279 GKCVTPPDA 287 (612)
T ss_pred EecCCCccc
Confidence 999876543
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=2.5e-16 Score=134.83 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=74.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
...++|||+|||+.+++++|+.+|.+ ||.|.+++++++ ..+|+++|||||+|.+.++|++|+..|||..|.||.|+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~I~~D---~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWD---PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEEEeec---CCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 34588999999999999999999999 999999987543 67899999999999999999999999999999999999
Q ss_pred EEeecC
Q 039336 155 IQFGRN 160 (167)
Q Consensus 155 v~~a~~ 160 (167)
|.+...
T Consensus 181 V~rp~~ 186 (612)
T TIGR01645 181 VGRPSN 186 (612)
T ss_pred eccccc
Confidence 987543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=6.4e-16 Score=125.44 Aligned_cols=85 Identities=28% Similarity=0.477 Sum_probs=75.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--KPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g--r~l 153 (167)
..++|||+|||+.+|+++|+++|++ ||.|..++++ .+..+|+++|||||+|.+.++|++||..||+..+.| ++|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~---~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNIL---RDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEe---ecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 3578999999999999999999999 9999988864 336689999999999999999999999999999865 789
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
.|.+|......
T Consensus 268 ~V~~a~~~~~~ 278 (346)
T TIGR01659 268 TVRLAEEHGKA 278 (346)
T ss_pred EEEECCccccc
Confidence 99999866544
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=1.1e-15 Score=96.24 Aligned_cols=70 Identities=36% Similarity=0.578 Sum_probs=61.0
Q ss_pred EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 80 lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
|||+|||++++.++|+.+|+. ||.|..+++. ....|.++|+|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~----~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLI----KNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEE----ESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEE----eeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999 9999877743 233488999999999999999999999999999999884
No 12
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.7e-16 Score=108.37 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=72.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
..++||||+||++-+++++|.++|++ +|.|..+-..++ ..+..+.|||||+|.+.++|..|+.-++|+.|..++|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLd---r~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLD---RFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccc---cCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 35799999999999999999999999 999987654333 45677899999999999999999999999999999999
Q ss_pred EEeec
Q 039336 155 IQFGR 159 (167)
Q Consensus 155 v~~a~ 159 (167)
++|--
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99853
No 13
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=101.64 Aligned_cols=79 Identities=24% Similarity=0.557 Sum_probs=70.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.-++.|||+|||+.+|.++..++|++ ||.|..+++. -+...+|.|||.|.+..+|.+|+..|+|+.+.++.|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG------~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIG------NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhc-ccceEEEEec------CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 34678999999999999999999999 9999877743 3556899999999999999999999999999999999
Q ss_pred EEeecC
Q 039336 155 IQFGRN 160 (167)
Q Consensus 155 v~~a~~ 160 (167)
|-+..+
T Consensus 89 vlyyq~ 94 (124)
T KOG0114|consen 89 VLYYQP 94 (124)
T ss_pred EEecCH
Confidence 988653
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=1e-15 Score=118.21 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=68.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+++|+. ||.|.++.++. .+..+|||||+|.++++|..|| .|+|..|.|+.|.|.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~------d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt 75 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQS------ENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTIT 75 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEee------cCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEE
Confidence 468999999999999999999999 99999988642 2236899999999999999999 699999999999999
Q ss_pred eec
Q 039336 157 FGR 159 (167)
Q Consensus 157 ~a~ 159 (167)
++.
T Consensus 76 ~a~ 78 (260)
T PLN03120 76 PAE 78 (260)
T ss_pred ecc
Confidence 986
No 15
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=1.8e-15 Score=117.34 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=78.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
.+.|-+||||+.|++++++..|+..|.. ||.|+.++++ .+..||+++|||||+|....+...|.+..+|.+|.|+.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV---~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLV---RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEe---eecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 3467799999999999999999999999 9999999875 44679999999999999999999999999999999999
Q ss_pred eEEEeecCC
Q 039336 153 MIIQFGRNP 161 (167)
Q Consensus 153 l~v~~a~~~ 161 (167)
|.|++-+.+
T Consensus 173 i~VDvERgR 181 (335)
T KOG0113|consen 173 ILVDVERGR 181 (335)
T ss_pred EEEEecccc
Confidence 999987654
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=4.7e-16 Score=117.12 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=68.5
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+.|||++|+|.++.+.|+.+|.+ ||.|.++.+ |.++.+|++||||||+|.+.++|.+|++.. .-.|.||+-.|.+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeq-fGeI~eavv---itd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVV---ITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHH-hCceEEEEE---EeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 56999999999999999999999 999998876 456889999999999999999999998444 4678999988888
Q ss_pred ec
Q 039336 158 GR 159 (167)
Q Consensus 158 a~ 159 (167)
|-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 74
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=8.1e-16 Score=132.15 Aligned_cols=84 Identities=31% Similarity=0.502 Sum_probs=76.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
..+++|||+||++.+++++|+++|++ ||.|.+++++. ..+|.++|||||+|.+.++|.+|+..|||..|+|++|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~-~G~i~~~~i~~----d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~ 357 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSE-CGEITSAKVML----DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY 357 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHh-cCCeEEEEEEE----CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence 34678999999999999999999999 99999988643 36799999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 039336 155 IQFGRNPAA 163 (167)
Q Consensus 155 v~~a~~~~~ 163 (167)
|.+|..+..
T Consensus 358 V~~a~~k~~ 366 (562)
T TIGR01628 358 VALAQRKEQ 366 (562)
T ss_pred EEeccCcHH
Confidence 999987654
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=1.5e-15 Score=130.45 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=73.2
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
+|||+|||+++|+++|+.+|++ ||.|.+|++.. +..+++++|||||+|.+.++|.+|+..||+..+.|++|+|.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~-~G~v~~v~v~~---d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKP-FGPVLSVRVCR---DSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 6999999999999999999999 99999988653 3567999999999999999999999999999999999999998
Q ss_pred cCCC
Q 039336 159 RNPA 162 (167)
Q Consensus 159 ~~~~ 162 (167)
....
T Consensus 78 ~~~~ 81 (562)
T TIGR01628 78 QRDP 81 (562)
T ss_pred cccc
Confidence 6543
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.8e-16 Score=118.38 Aligned_cols=81 Identities=22% Similarity=0.421 Sum_probs=75.9
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
..+||+-|...++.++|++.|.+ ||.|.+++++ +++.|+++||||||.|.+.++|++||..|||.+|++|.|+-.|
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~p-FGevS~akvi---rD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVI---RDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred eeEEehhcchhcchHHHHHHhcc-ccccccceEe---ecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 45999999999999999999999 9999999984 5688999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 039336 158 GRNPA 162 (167)
Q Consensus 158 a~~~~ 162 (167)
|..+.
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 97654
No 20
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=114.59 Aligned_cols=85 Identities=39% Similarity=0.689 Sum_probs=76.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHH----HHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFF----IFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~----~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
..+|+.||||.||+..+..++|+. +|++ ||.| ++|....+.+.||.|||.|.+.+.|..|+.+|+|+.+
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsq-fG~i------ldI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKI------LDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF 77 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHh-hCCe------EEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcc
Confidence 345667999999999999999887 9999 9999 4556667899999999999999999999999999999
Q ss_pred CCeeeEEEeecCCCCC
Q 039336 149 KGKPMIIQFGRNPAAA 164 (167)
Q Consensus 149 ~gr~l~v~~a~~~~~~ 164 (167)
.|++++|+||+++++.
T Consensus 78 ygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 78 YGKPMRIQYAKSDSDI 93 (221)
T ss_pred cCchhheecccCccch
Confidence 9999999999988763
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=2.2e-15 Score=126.25 Aligned_cols=79 Identities=28% Similarity=0.563 Sum_probs=73.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|++ ||.|..+.++ ....+|.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~---~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLH---RDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 588999999999999999999999 9999988764 335678999999999999999999999999999999999999
Q ss_pred eec
Q 039336 157 FGR 159 (167)
Q Consensus 157 ~a~ 159 (167)
||.
T Consensus 262 ~a~ 264 (457)
T TIGR01622 262 YAQ 264 (457)
T ss_pred Ecc
Confidence 976
No 22
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.8e-15 Score=109.42 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=69.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
-.+.|||+||+..+++.+|..+|.. ||.|..+-+- -.+.|||||+|.++.+|..|+..|+|..|.|..|+|
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvA--------rnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVA--------RNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHh-cCcceeEEEe--------ecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 3678999999999999999999999 9999765321 157999999999999999999999999999999999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
+++....
T Consensus 80 E~S~G~~ 86 (195)
T KOG0107|consen 80 ELSTGRP 86 (195)
T ss_pred EeecCCc
Confidence 9987654
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.7e-15 Score=124.46 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=70.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV--ELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~--~~A~~Al~~l~g~~l~gr~l 153 (167)
.+.+||||||++.+++++|..+|+. ||.|..+.++ ..+| ||||||+|.+. .++.+||..|||..+.||.|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIp-----RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFV-----RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe-----cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 3577999999999999999999999 9999998864 4466 99999999987 78999999999999999999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
+|+.|+.
T Consensus 81 KVNKAKP 87 (759)
T PLN03213 81 RLEKAKE 87 (759)
T ss_pred EEeeccH
Confidence 9999874
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.62 E-value=4e-15 Score=126.18 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+.++|||+|||+.+++++|+.+|.. ||.|..+.++ ....+|.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~~~~---~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLES-FGDLKAFNLI---KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEE---ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 4578999999999999999999999 9999888764 33568999999999999999999999999999999999999
Q ss_pred EeecC
Q 039336 156 QFGRN 160 (167)
Q Consensus 156 ~~a~~ 160 (167)
.+|..
T Consensus 370 ~~a~~ 374 (509)
T TIGR01642 370 QRACV 374 (509)
T ss_pred EECcc
Confidence 99864
No 25
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=1.2e-15 Score=113.10 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=74.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
.+|-|-||.+.++.++|+.+|.+ ||.|-.|.|+.+ ..|+.++|||||-|.+..+|+.|+++|+|.+|.|+.|.|++
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrd---r~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRD---RYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHH-hCcccceecccc---cccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 67999999999999999999999 999999998765 67899999999999999999999999999999999999999
Q ss_pred ecC
Q 039336 158 GRN 160 (167)
Q Consensus 158 a~~ 160 (167)
|+-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 974
No 26
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2.8e-15 Score=117.60 Aligned_cols=78 Identities=22% Similarity=0.280 Sum_probs=71.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
++|+|+|||+...+-||+.+|.+ ||.|.++.|++. ...+||||||+|.+.++|.+|-..|||..+.||.|.|..
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfN-----ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFN-----ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred ceeEeecCCccccCccHHHHHHh-hCceeeEEEEec-----cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 78999999999999999999999 999998887643 446899999999999999999999999999999999999
Q ss_pred ecCC
Q 039336 158 GRNP 161 (167)
Q Consensus 158 a~~~ 161 (167)
|..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8654
No 27
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=9.6e-17 Score=116.71 Aligned_cols=80 Identities=19% Similarity=0.401 Sum_probs=73.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+.-|||+|||+..|+.||.-+|++ ||.|..+.+ +++..||+++||||++|.+..+.-.|+..|||..|.||.|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinL---iRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINL---IRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeec-cCceEEEEE---EecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 3467999999999999999999999 999988876 466889999999999999999999999999999999999999
Q ss_pred Eeec
Q 039336 156 QFGR 159 (167)
Q Consensus 156 ~~a~ 159 (167)
+..-
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 8754
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.8e-15 Score=113.77 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=74.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
+.+|+|||+|++..+|+++|++.|++ ||.|.++|+. +.+|||||.|.+.++|.+||..+||..+.|..++
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvF---------k~qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVF---------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEe---------cccceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 45699999999999999999999999 9999998864 4689999999999999999999999999999999
Q ss_pred EEeecCCCCCCC
Q 039336 155 IQFGRNPAAAKP 166 (167)
Q Consensus 155 v~~a~~~~~~k~ 166 (167)
+.|.|...+...
T Consensus 232 CsWGKe~~~~~~ 243 (321)
T KOG0148|consen 232 CSWGKEGDDGIN 243 (321)
T ss_pred EeccccCCCCCC
Confidence 999987655443
No 29
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.2e-15 Score=104.07 Aligned_cols=85 Identities=16% Similarity=0.369 Sum_probs=77.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
...++.|||.++...+|++++...|.. ||.|..+.+.++ .+||..+|||+|+|.+...|+.|+.++||..|.|.+|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLD---RRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLD---RRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccc---cccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 345688999999999999999999999 999999987655 7899999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|+|+..+.
T Consensus 145 ~VDw~Fv~g 153 (170)
T KOG0130|consen 145 SVDWCFVKG 153 (170)
T ss_pred eEEEEEecC
Confidence 999986443
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=8.4e-15 Score=122.80 Aligned_cols=82 Identities=24% Similarity=0.443 Sum_probs=74.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+++|++ ||.|..++++. +..+|+++|||||+|.+.++|.+|| .|+|..|.|++|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~i~~---d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i 160 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSK-VGKVRDVQCIK---DRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPI 160 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEee---cCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeee
Confidence 345689999999999999999999999 99999988753 3668999999999999999999999 699999999999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
.|.++..
T Consensus 161 ~v~~~~~ 167 (457)
T TIGR01622 161 IVQSSQA 167 (457)
T ss_pred EEeecch
Confidence 9998754
No 31
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.4e-16 Score=115.25 Aligned_cols=83 Identities=24% Similarity=0.381 Sum_probs=77.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..++|||++|..++++.-|...|-+ ||.|..+.++++ ..+++.||||||+|.-.++|..||..||+..|.||.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlD---yesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLD---YESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcccc-ccchhhcccccc---hhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 4578999999999999999999999 999999998866 668999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
.+|++..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9998754
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.59 E-value=9.6e-15 Score=123.53 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=68.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV--NGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l--~g~~l~gr~l 153 (167)
|+++|||+|||+++++++|+++|++ ||.|.++.++ +++|||||+|.+.++|.+|+..| ++..|.|++|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~-fG~V~~v~i~---------~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l 70 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIP-FGPVSYVMML---------PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPA 70 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEE---------CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEE
Confidence 5789999999999999999999999 9999888743 25799999999999999999875 7788999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
+|.|+..+.
T Consensus 71 ~v~~s~~~~ 79 (481)
T TIGR01649 71 FFNYSTSQE 79 (481)
T ss_pred EEEecCCcc
Confidence 999997543
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.59 E-value=1.2e-14 Score=122.96 Aligned_cols=78 Identities=26% Similarity=0.401 Sum_probs=70.5
Q ss_pred CCCCEEEecCCCC-CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLAK-DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~-~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
.++++|||+|||+ .+|+++|+.+|+. ||.|..++++.+ .+|||||+|.+.++|..|+..|||..|.|++|
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~-yG~V~~vki~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCV-YGNVERVKFMKN--------KKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHh-cCCeEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 4678999999998 6999999999999 999998886422 47999999999999999999999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
+|.+++.+
T Consensus 344 ~v~~s~~~ 351 (481)
T TIGR01649 344 RVCPSKQQ 351 (481)
T ss_pred EEEEcccc
Confidence 99998754
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=2e-14 Score=89.26 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=64.1
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+|||+|||..++.++|+.+|.+ ||.+..+.+.. .. +.++|+|||+|.+.+.|..|+..++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~----~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPK----DT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEec----CC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 4899999999999999999999 99998776432 22 7789999999999999999999999999999998873
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2e-15 Score=115.87 Aligned_cols=89 Identities=25% Similarity=0.384 Sum_probs=83.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
++.+|.|||-+||-+.++.+|..+|.. ||.|.+.++.+| +.|..+|+||||.|+++.+|+.||.+|||+.|+.++|
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvD---RATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVD---RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeeh---hccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 567899999999999999999999999 999999997654 6789999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCC
Q 039336 154 IIQFGRNPAAAKP 166 (167)
Q Consensus 154 ~v~~a~~~~~~k~ 166 (167)
+|++-+++...+|
T Consensus 358 KVQLKRPkdanRP 370 (371)
T KOG0146|consen 358 KVQLKRPKDANRP 370 (371)
T ss_pred hhhhcCccccCCC
Confidence 9999999988776
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=111.15 Aligned_cols=79 Identities=32% Similarity=0.541 Sum_probs=73.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|.+ ||.+..+.+..+ ..+|.++|||||+|.+.++|..|+..++|..|.|++|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d---~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRD---RETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeec---cccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 589999999999999999999999 999988876533 4689999999999999999999999999999999999999
Q ss_pred eec
Q 039336 157 FGR 159 (167)
Q Consensus 157 ~a~ 159 (167)
++.
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 964
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=110.06 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=68.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+++|||+||++.+|+++|+++|+. ||.|..|+++ ..+..+|||||+|.++.+|..|+ .|+|..|.+++|.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~------~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~I 75 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEII------RSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCI 75 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEe------cCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEE
Confidence 4689999999999999999999999 9999988854 23566789999999999999999 99999999999999
Q ss_pred Eeec
Q 039336 156 QFGR 159 (167)
Q Consensus 156 ~~a~ 159 (167)
..+-
T Consensus 76 t~~~ 79 (243)
T PLN03121 76 TRWG 79 (243)
T ss_pred EeCc
Confidence 8753
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=120.50 Aligned_cols=82 Identities=22% Similarity=0.435 Sum_probs=76.4
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+.+||||+|+++++++|..+|+. .|.|.+++++.| ..+|+++||||++|.+.+.|..|+..|||..+.||+|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D---~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYD---RETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeeccc---ccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 78999999999999999999999 999999887544 78999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 039336 158 GRNPAA 163 (167)
Q Consensus 158 a~~~~~ 163 (167)
+.....
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 976543
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2.3e-14 Score=122.49 Aligned_cols=79 Identities=25% Similarity=0.439 Sum_probs=70.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeeE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GKPMI 154 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~-gr~l~ 154 (167)
.+++|||+|||+++++++|+.+|++ ||.|..++++++ .+|++||||||+|.+.++|++||..|||..+. |+.|.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~-~G~I~~vrl~~D----~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEK-AGPIYELRLMMD----FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHh-hCCEEEEEEEEC----CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 3589999999999999999999999 999999886533 68999999999999999999999999999984 88888
Q ss_pred EEeec
Q 039336 155 IQFGR 159 (167)
Q Consensus 155 v~~a~ 159 (167)
|..+.
T Consensus 132 V~~S~ 136 (578)
T TIGR01648 132 VCISV 136 (578)
T ss_pred ccccc
Confidence 77653
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=3.7e-14 Score=121.22 Aligned_cols=75 Identities=25% Similarity=0.434 Sum_probs=68.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhcc--CCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLF--GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~--G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++|||+|||+.+++++|+++|++ | |.|..+++ .++||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~-----------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I 299 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKK-----------IRDYAFVHFEDREDAVKAMDELNGKELEGSEI 299 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEe-----------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 3578999999999999999999999 9 99987653 36799999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
+|+||++..
T Consensus 300 ~V~~Akp~~ 308 (578)
T TIGR01648 300 EVTLAKPVD 308 (578)
T ss_pred EEEEccCCC
Confidence 999998754
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3.6e-14 Score=115.28 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCeee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF-KGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l-~gr~l 153 (167)
..+|.|||+.||.++.+++|..+|.+ .|.|-+++++++ ..+|.+||||||+|.+.+.|+.|++.||++.| .|+.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEk-iG~I~elRLMmD---~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEK-IGKIYELRLMMD---PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHh-ccceeeEEEeec---ccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 34699999999999999999999999 999999887654 56899999999999999999999999999998 69999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
.|+.+..
T Consensus 157 gvc~Sva 163 (506)
T KOG0117|consen 157 GVCVSVA 163 (506)
T ss_pred EEEEeee
Confidence 9998753
No 42
>smart00360 RRM RNA recognition motif.
Probab=99.54 E-value=5.7e-14 Score=86.83 Aligned_cols=71 Identities=32% Similarity=0.555 Sum_probs=62.9
Q ss_pred ecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 82 IKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 82 V~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
|+|||..++.++|+.+|.+ ||.|..+.+.. ...++.++|||||+|.+.++|.+|+..++|..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~---~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVR---DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEe---CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999 99998877532 23368899999999999999999999999999999999873
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4e-14 Score=108.36 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=77.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+.|.|.-||-.+|+++|+.+|+. .|.|++|+++ +++-+|.+-||+||-|.++.+|.+|+..|||..|..+.|+|+|
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~S-iGeiEScKLv---RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGS-IGEIESCKLV---RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhc-ccceeeeeee---eccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 56889999999999999999999 9999999985 5578999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 039336 158 GRNPAAA 164 (167)
Q Consensus 158 a~~~~~~ 164 (167)
|++.++.
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9987653
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=5.4e-14 Score=116.70 Aligned_cols=84 Identities=26% Similarity=0.441 Sum_probs=76.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+-++|.|+||||.+...+|..+|++ ||.+..+.|+ ....|+..|||||.|....+|..||+.+||..|.||+|-|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP----~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAV 190 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIP----RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAV 190 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcc----cCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEE
Confidence 4678999999999999999999999 9999888765 2457888899999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 039336 156 QFGRNPAAA 164 (167)
Q Consensus 156 ~~a~~~~~~ 164 (167)
+||..+...
T Consensus 191 DWAV~Kd~y 199 (678)
T KOG0127|consen 191 DWAVDKDTY 199 (678)
T ss_pred eeecccccc
Confidence 999877543
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.5e-13 Score=84.65 Aligned_cols=74 Identities=31% Similarity=0.587 Sum_probs=65.2
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+|||+|||+.++.++|+.+|.. ||.|..+.+. ....+.++|+|||.|.+.++|..|+..++|..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~----~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIV----RDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEe----eCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999 9999877643 223346799999999999999999999999999999999874
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.1e-14 Score=114.37 Aligned_cols=77 Identities=29% Similarity=0.483 Sum_probs=70.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
..|||+||+.++|++.|+++|++ ||.|..++. .|-||||+|.+.++|.+||+.+||+.|.|..|.|.+
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk-----------~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNE-FGKVERVKK-----------PRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHh-ccceEEeec-----------ccceeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 67999999999999999999999 999988763 366999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 039336 158 GRNPAAAKP 166 (167)
Q Consensus 158 a~~~~~~k~ 166 (167)
||+..+.+.
T Consensus 328 AKP~~k~k~ 336 (506)
T KOG0117|consen 328 AKPVDKKKK 336 (506)
T ss_pred cCChhhhcc
Confidence 998766543
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.7e-14 Score=102.69 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
....++|||+|||.++.+.+|..+|.+ ||.|..|.+ +..-...+||||+|.++.+|..||..-+|+.+.|..|
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieL------K~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rL 75 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIEL------KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRL 75 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhh-hcceEEEEe------ccCCCCCCeeEEEecCccchhhhhhcccccccCcceE
Confidence 345688999999999999999999999 999976552 2233457899999999999999999999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
+|+|+.+-
T Consensus 76 RVEfprgg 83 (241)
T KOG0105|consen 76 RVEFPRGG 83 (241)
T ss_pred EEEeccCC
Confidence 99999753
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.7e-13 Score=105.01 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+++|||-||.+++.+.-|+++|++ ||.|..++++ ++..+.+.+|||||++.+-++|..||..|||+.|++|.|.|+
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVKvi---rD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGP-FGAVTNVKVI---RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCc-ccceeeEEEE---ecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 589999999999999999999999 9999999975 446678999999999999999999999999999999999999
Q ss_pred eecCC
Q 039336 157 FGRNP 161 (167)
Q Consensus 157 ~a~~~ 161 (167)
|-.++
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 97654
No 49
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.49 E-value=4.7e-14 Score=102.69 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
+...||||+||+..++++.|+++|.+ .|+|..++++.+ ..+...+|||||+|.+.++|+-|++-||+..|.||+|+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkD---rv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKD---RVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchh---hhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 45688999999999999999999999 999988887644 55778999999999999999999999999999999999
Q ss_pred EEeec
Q 039336 155 IQFGR 159 (167)
Q Consensus 155 v~~a~ 159 (167)
|..|.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99886
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.9e-14 Score=113.58 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=72.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
|+|||+.+.+.+.++.|+..|.. ||+|.++...|| .-|++++|||||+|.-++.|+.|++.|||.+++||.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~P-FGPIKSInMSWD---p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWD---PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccC-CCCcceeecccc---cccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 88999999999999999999999 999999987666 56899999999999999999999999999999999999974
Q ss_pred e
Q 039336 158 G 158 (167)
Q Consensus 158 a 158 (167)
-
T Consensus 190 P 190 (544)
T KOG0124|consen 190 P 190 (544)
T ss_pred C
Confidence 3
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=8.5e-13 Score=79.71 Aligned_cols=56 Identities=36% Similarity=0.695 Sum_probs=48.4
Q ss_pred HHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 94 FFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 94 L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
|+.+|++ ||.|..+.+. ... +++|||+|.+.++|..|+..|||..+.|++|+|+||
T Consensus 1 L~~~f~~-fG~V~~i~~~------~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIF------KKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEE------TTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEE------eCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999 9999877642 111 699999999999999999999999999999999997
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.4e-13 Score=111.46 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=73.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eC--Ceee
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FK--GKPM 153 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~-l~--gr~l 153 (167)
.+.|||+-|+..+|+.+++.+|++ ||.|++|++. ....|.+||||||+|.+.+-|..||++|||.. +. ..+|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~il----rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYIL----RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHh-hCccchhhhe----ecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 467999999999999999999999 9999999854 35678999999999999999999999999977 44 5789
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
.|.||.++.+.
T Consensus 199 VVkFADtqkdk 209 (510)
T KOG0144|consen 199 VVKFADTQKDK 209 (510)
T ss_pred EEEecccCCCc
Confidence 99999887654
No 53
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.9e-14 Score=111.39 Aligned_cols=90 Identities=19% Similarity=0.329 Sum_probs=81.4
Q ss_pred CCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 70 NYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 70 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
.....+|...|||-.|++-++.++|.-+|+. ||.|.+|.++ ++..||.+-.||||+|.+.+++++|.-.|++..|.
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVI---RD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVI---RDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhh-cccceeeeEE---ecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 3444567799999999999999999999999 9999999874 55889999999999999999999999999999999
Q ss_pred CeeeEEEeecCCCC
Q 039336 150 GKPMIIQFGRNPAA 163 (167)
Q Consensus 150 gr~l~v~~a~~~~~ 163 (167)
.|+|+|.|+.+.+.
T Consensus 308 DrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 308 DRRIHVDFSQSVSK 321 (479)
T ss_pred cceEEeehhhhhhh
Confidence 99999999876543
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=7.9e-13 Score=83.60 Aligned_cols=62 Identities=27% Similarity=0.375 Sum_probs=52.9
Q ss_pred HHHHHHHHh----hccCCeeeee-eeeeeeecCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 91 PDDFFFIFG----SLFGSIDAAK-CGLTVKLMQE--GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 91 ~~~L~~~F~----~~~G~i~~~~-~~~~i~~~~~--g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+++|+.+|+ + ||.|..+. +. ....+ |+++|||||.|.+.++|.+|+..|||..+.||.|.++
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~---~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIY---IDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEE---eCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888998 8 99998874 33 22444 8999999999999999999999999999999999863
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.40 E-value=5e-13 Score=110.99 Aligned_cols=78 Identities=29% Similarity=0.480 Sum_probs=71.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
..|||+||.+.+++++|+.+|.+ ||.|..+.++++ ..+|.++|||||+|.+.++|.+|+..|||+.|.||.|+|..
T Consensus 279 ~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d---~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKD---SETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhhcccccCchHHHHhhhccC-cccceeeeeccc---cccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 44999999999999999999999 999998876544 45999999999999999999999999999999999999987
Q ss_pred ec
Q 039336 158 GR 159 (167)
Q Consensus 158 a~ 159 (167)
..
T Consensus 355 v~ 356 (549)
T KOG0147|consen 355 VT 356 (549)
T ss_pred ee
Confidence 54
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1.3e-12 Score=101.36 Aligned_cols=73 Identities=18% Similarity=0.387 Sum_probs=68.3
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
.|||+|||..+++.+|+.+|.+ ||.|.+|-|+ |+||||...+...|..||..|+|+.|+|..|.|+-+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQ-YGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred chhccCCCcccchHHHHHHHHh-hCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 4999999999999999999999 9999888754 789999999999999999999999999999999999
Q ss_pred cCCCC
Q 039336 159 RNPAA 163 (167)
Q Consensus 159 ~~~~~ 163 (167)
++++.
T Consensus 72 ksKsk 76 (346)
T KOG0109|consen 72 KSKSK 76 (346)
T ss_pred cccCC
Confidence 98854
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.34 E-value=2.3e-12 Score=93.99 Aligned_cols=85 Identities=19% Similarity=0.369 Sum_probs=73.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.-+..|||+||.+.+++..|.+.|+. ||.+...--+ .++..||.++|||||-|.+.+.+.+|+..+||..+..|++.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i--~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKI--MRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHh-ccccccCCcc--cccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 34578999999999999999999999 9998542211 23456899999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 039336 155 IQFGRNPA 162 (167)
Q Consensus 155 v~~a~~~~ 162 (167)
|++|..+.
T Consensus 171 v~ya~k~~ 178 (203)
T KOG0131|consen 171 VSYAFKKD 178 (203)
T ss_pred EEEEEecC
Confidence 99998664
No 58
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.34 E-value=4.2e-12 Score=94.20 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=71.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhcc-CCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLF-GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~-G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
....+||..+|..+.+..+..+|.+ | |.+...++. +..+||.++|||||+|.+.+.|.-|-+.||++.|+|+.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q-~~g~v~r~rls---RnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQ-FGGTVTRFRLS---RNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccceeecccccchhHHHHhhhhhh-cCCeeEEEEee---cccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 3456999999999999999999999 6 777665532 5578999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 039336 155 IQFGRNP 161 (167)
Q Consensus 155 v~~a~~~ 161 (167)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9986554
No 59
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.32 E-value=1.4e-11 Score=103.13 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=75.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
++.|||.+|+..+...+|+.+|++ ||.|.-++++ ...++...++|+||++.+...|.+||..|+.+.|+||.|.|+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVV---TNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVV---TNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHH-hcceeceeee---ecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 477999999999999999999999 9999888864 334566679999999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 039336 157 FGRNPAAAKP 166 (167)
Q Consensus 157 ~a~~~~~~k~ 166 (167)
.|+....-+.
T Consensus 481 kaKNEp~Gkk 490 (940)
T KOG4661|consen 481 KAKNEPGGKK 490 (940)
T ss_pred ecccCccccc
Confidence 9987765443
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.1e-11 Score=101.47 Aligned_cols=77 Identities=29% Similarity=0.512 Sum_probs=70.1
Q ss_pred EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeec
Q 039336 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 80 lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~ 159 (167)
|||.||+++++...|.++|+. ||.|.+|++.. ...| ++|| ||+|.+.+.|.+|+..+||..+.|+.|.|..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~----~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSE-FGNILSCKVAT----DENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeecCCCcccCcHHHHHHHHh-hcCeeEEEEEE----cCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 999999999999999999999 99999999653 3445 9999 999999999999999999999999999999887
Q ss_pred CCCC
Q 039336 160 NPAA 163 (167)
Q Consensus 160 ~~~~ 163 (167)
.+.+
T Consensus 152 ~~~e 155 (369)
T KOG0123|consen 152 RKEE 155 (369)
T ss_pred chhh
Confidence 6654
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.29 E-value=1.7e-11 Score=104.12 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=68.7
Q ss_pred CCCCEEEecCCCCC--C--------CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 75 NPASVLYIKNLAKD--V--------IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 75 ~~~~~lfV~nLp~~--~--------t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
.++.+|+|.||... + ..++|+.+|.+ ||.|..|.|+.......++...|+|||+|.+.++|++|+..||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 46788999999642 1 23578999999 9999998875432233456778999999999999999999999
Q ss_pred CceeCCeeeEEEeec
Q 039336 145 GYVFKGKPMIIQFGR 159 (167)
Q Consensus 145 g~~l~gr~l~v~~a~ 159 (167)
|..|+|+.|.|.|..
T Consensus 486 Gr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 486 GRKFNDRVVVAAFYG 500 (509)
T ss_pred CCEECCeEEEEEEeC
Confidence 999999999999974
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=4.1e-12 Score=98.62 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|+|+||.+.++..+|+..|.+ ||++.+|.++ ++|+||.|.-.++|..|+..|+|..|.|++|
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdiv-----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIV-----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeee-----------cceeEEEEeeccchHHHHhccccccccccee
Confidence 346788999999999999999999999 9999888753 7899999999999999999999999999999
Q ss_pred EEEeecCCCCCCC
Q 039336 154 IIQFGRNPAAAKP 166 (167)
Q Consensus 154 ~v~~a~~~~~~k~ 166 (167)
+|+++.++-..+|
T Consensus 143 ~vq~stsrlrtap 155 (346)
T KOG0109|consen 143 HVQLSTSRLRTAP 155 (346)
T ss_pred eeeeeccccccCC
Confidence 9999988765543
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=3.4e-12 Score=108.71 Aligned_cols=82 Identities=16% Similarity=0.398 Sum_probs=74.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.+.|+|+|||+..+-.+++.+|.. ||.+.+++++.. ...+.++|||||+|-++.+|.+|+.+|.++.|+||+|.++
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK---~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKK---IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhc-ccceeeeccchh---hcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 467999999999999999999999 999999997622 3456789999999999999999999999999999999999
Q ss_pred eecCCC
Q 039336 157 FGRNPA 162 (167)
Q Consensus 157 ~a~~~~ 162 (167)
||+...
T Consensus 689 wA~~d~ 694 (725)
T KOG0110|consen 689 WAKSDN 694 (725)
T ss_pred hhccch
Confidence 998764
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.2e-11 Score=100.42 Aligned_cols=91 Identities=22% Similarity=0.385 Sum_probs=82.3
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
..++.+..|||.+||-+..+.+|...|.. ||.|.+.++.+| +.||-+++|+||.|++..+|..||..|||..++++
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~p-fG~Vlsakvfid---k~tnlskcfgfvSyen~~sa~~aI~amngfQig~K 494 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQP-FGGVLSAKVFID---KVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSK 494 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhcc-ccceeEEEEEEe---cccCHhhhcCcccccchhhhHHHHHHhcchhhccc
Confidence 34566788999999999999999999999 999999987544 78999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCCC
Q 039336 152 PMIIQFGRNPAAAKP 166 (167)
Q Consensus 152 ~l~v~~a~~~~~~k~ 166 (167)
+|+|++.+.+...++
T Consensus 495 rlkVQlk~~~~np~~ 509 (510)
T KOG0144|consen 495 RLKVQLKRDRNNPYP 509 (510)
T ss_pred cceEEeeeccCCCCC
Confidence 999999998876554
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=2.3e-11 Score=104.69 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
++||||++|+..+++.+|..+|.. ||.|.++.++ .++|||||++....+|.+|+..|+...+.++.|+|.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li---------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILI---------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHh-cccceeEeec---------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 489999999999999999999999 9999987643 479999999999999999999999999999999999
Q ss_pred eecCCC
Q 039336 157 FGRNPA 162 (167)
Q Consensus 157 ~a~~~~ 162 (167)
||.++.
T Consensus 491 Wa~g~G 496 (894)
T KOG0132|consen 491 WAVGKG 496 (894)
T ss_pred eeccCC
Confidence 998764
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.23 E-value=4.1e-11 Score=97.66 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.+.+||.|+|+++...+|+.+|....|.|++|.+. ....|++||||.|+|.+++.+++|++.||.+.+.||+|.|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl----~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELL----FDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeee----cccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 35699999999999999999999878999998854 45789999999999999999999999999999999999886
Q ss_pred e
Q 039336 157 F 157 (167)
Q Consensus 157 ~ 157 (167)
-
T Consensus 120 E 120 (608)
T KOG4212|consen 120 E 120 (608)
T ss_pred c
Confidence 3
No 67
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=87.08 Aligned_cols=87 Identities=24% Similarity=0.423 Sum_probs=69.8
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeee
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF---KGKPM 153 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l---~gr~l 153 (167)
-+||||.+||.++...+|+.+|.. |-..+.+.+- .......-.+-+|||+|.+...|..|+.+|||..| .+..|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK--~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLK--YTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhcc-CCCccceeee--eccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 489999999999999999999999 8666665421 11111122358999999999999999999999998 48999
Q ss_pred EEEeecCCCCCCC
Q 039336 154 IIQFGRNPAAAKP 166 (167)
Q Consensus 154 ~v~~a~~~~~~k~ 166 (167)
++++|++....|.
T Consensus 111 hiElAKSNtK~kr 123 (284)
T KOG1457|consen 111 HIELAKSNTKRKR 123 (284)
T ss_pred EeeehhcCccccc
Confidence 9999997766554
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=8e-11 Score=100.51 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=66.9
Q ss_pred EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCC----CcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG----RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 80 lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g----~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
|||.||++++|.++|..+|.. .|.|.++.|. ....+ .+.|||||+|.++++|++|+..|+|+.|.|+.|.|
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k-~G~VlS~~I~----kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSK-QGTVLSIEIS----KKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhcCCcccchhHHHHHHHh-cCeEEEEEEe----ccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 999999999999999999999 9999887643 22222 35699999999999999999999999999999999
Q ss_pred Eeec
Q 039336 156 QFGR 159 (167)
Q Consensus 156 ~~a~ 159 (167)
.++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9997
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=5.2e-11 Score=91.76 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=73.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eC--Cee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FK--GKP 152 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~-l~--gr~ 152 (167)
..+.|||+-|...-+++|++.+|.. ||.|++|. +.....|.+||||||.|.+..+|+.||..|+|.. +- ...
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~t----vlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECT----VLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcc-cCCcceeE----EecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 3577999999999999999999999 99999987 3446789999999999999999999999999977 33 467
Q ss_pred eEEEeecCCCC
Q 039336 153 MIIQFGRNPAA 163 (167)
Q Consensus 153 l~v~~a~~~~~ 163 (167)
|.|.||.++.+
T Consensus 93 LVVK~ADTdkE 103 (371)
T KOG0146|consen 93 LVVKFADTDKE 103 (371)
T ss_pred eEEEeccchHH
Confidence 99999987764
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.9e-10 Score=91.27 Aligned_cols=74 Identities=32% Similarity=0.468 Sum_probs=64.8
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEE
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV-NGYVFKGKPMIIQ 156 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l-~g~~l~gr~l~v~ 156 (167)
.+|||++|...+++.+|+.+|-+ ||.|+++++. ..+++|||+|.+..+|+.|...+ +...+.|++|.|.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~---------~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRIL---------PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred eEEEecccccchhHHHHHHHHhh-cCCeeeEEee---------cccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 78999999999999999999999 9999988753 24679999999999999988665 4455899999999
Q ss_pred eecCC
Q 039336 157 FGRNP 161 (167)
Q Consensus 157 ~a~~~ 161 (167)
|+++.
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99983
No 71
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=98.27 Aligned_cols=83 Identities=27% Similarity=0.370 Sum_probs=73.6
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+.|||+||++.++++.|...|+. ||+|.++++++.-..-...+.+.||||.|.+..+|++|+..|+|..+.+..|++-|
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred cceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 66999999999999999999999 99999999776533333467788999999999999999999999999999999999
Q ss_pred ecCC
Q 039336 158 GRNP 161 (167)
Q Consensus 158 a~~~ 161 (167)
++..
T Consensus 254 gk~V 257 (877)
T KOG0151|consen 254 GKAV 257 (877)
T ss_pred cccc
Confidence 9654
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.2e-10 Score=93.84 Aligned_cols=85 Identities=32% Similarity=0.533 Sum_probs=75.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+...|||.||+..++.+.|+.+|+. ||.|.+++++ ....|+++|||||+|...++|..|+..+||..++|++|
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~-~GeI~s~kv~----~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l 341 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSS-FGEITSAKVM----VDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPL 341 (369)
T ss_pred cccccccccccCccccchhHHHHHHhc-ccceeeEEEE----eccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCch
Confidence 345677999999999999999999999 9999987743 45689999999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
.|.++....+
T Consensus 342 ~vav~qr~~~ 351 (369)
T KOG0123|consen 342 YVAVAQRKED 351 (369)
T ss_pred hhhHHhhhcc
Confidence 9999874443
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.06 E-value=4.6e-10 Score=91.64 Aligned_cols=75 Identities=29% Similarity=0.361 Sum_probs=67.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
+..|+|||+|||+++|...|++-|.. ||.+.++.+ +..|+++| .|.|.++++|++|+..|+|..|.||.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre-~G~v~yadi------me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFRE-IGHVLYADI------MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHh-ccceehhhh------hccCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 34588999999999999999999999 999976553 45788888 8999999999999999999999999999
Q ss_pred EEee
Q 039336 155 IQFG 158 (167)
Q Consensus 155 v~~a 158 (167)
|.|+
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9874
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.03 E-value=1.4e-09 Score=83.96 Aligned_cols=82 Identities=30% Similarity=0.477 Sum_probs=72.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|+|.|||+.+++++|.++|.. ||.+..+- +.+...|.+.|.|-|.|...++|.+|++.|||..|.|++|.+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~----vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAE-FGELKRVA----VHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHH-hccceEEe----eccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 367999999999999999999999 99776554 3456789999999999999999999999999999999999998
Q ss_pred eecCCCC
Q 039336 157 FGRNPAA 163 (167)
Q Consensus 157 ~a~~~~~ 163 (167)
...+.+.
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 8765543
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=8.4e-10 Score=88.43 Aligned_cols=81 Identities=16% Similarity=0.324 Sum_probs=72.5
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
.+|||..+.++.+++||+..|.- ||.|..|.+- +...++.+|||||++|.+..+...|+..||-+.|+|..|+|-.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LA---r~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLA---RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHh-hcceeeEEee---ccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 67999999999999999999999 9999999864 2244567899999999999999999999999999999999987
Q ss_pred ecCCC
Q 039336 158 GRNPA 162 (167)
Q Consensus 158 a~~~~ 162 (167)
+.+..
T Consensus 287 ~vTPP 291 (544)
T KOG0124|consen 287 CVTPP 291 (544)
T ss_pred ccCCC
Confidence 76554
No 76
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.99 E-value=5.8e-09 Score=69.76 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=69.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhcc-CCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----Cee
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLF-GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK----GKP 152 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~-G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~----gr~ 152 (167)
+||.|+|+|...|.++|.+++...+ |...-..+++| ..++.+.|||||-|.+++.|.+-...++|..+. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD---f~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID---FKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee---ccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 6899999999999999999887633 66667777766 457889999999999999999999999999874 677
Q ss_pred eEEEeecCCC
Q 039336 153 MIIQFGRNPA 162 (167)
Q Consensus 153 l~v~~a~~~~ 162 (167)
..|.||+-+.
T Consensus 79 c~i~yAriQG 88 (97)
T PF04059_consen 79 CEISYARIQG 88 (97)
T ss_pred EEEehhHhhC
Confidence 8899987543
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.97 E-value=2.5e-09 Score=84.91 Aligned_cols=85 Identities=16% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeee----eeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAA----KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~----~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
.++.|||.|||.++|.+++..+|++ ||.|..- ..-+.+-....|+.+|=|.|+|...+++..|+..|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3567999999999999999999999 9988521 0001122234599999999999999999999999999999999
Q ss_pred eeEEEeecCC
Q 039336 152 PMIIQFGRNP 161 (167)
Q Consensus 152 ~l~v~~a~~~ 161 (167)
.|+|+.|+-+
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999999743
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=5.7e-10 Score=89.07 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=71.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..+.|||++|+|+++++.|+..|.+ ||.|..|.++.+ +.+++++||+||+|.+++...++| ...-..|.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~vm~d---~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCVVMRD---PSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEEEecc---CCCCCcccccceecCCCcchheee-cccccccCCccccc
Confidence 4578999999999999999999999 999999987644 667999999999999999988887 45556788999988
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
..|.++.+
T Consensus 80 k~av~r~~ 87 (311)
T KOG4205|consen 80 KRAVSRED 87 (311)
T ss_pred eeccCccc
Confidence 88877653
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.96 E-value=3.3e-09 Score=87.72 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=66.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
..+|||+|||++++.++|..+|.+ ||.|...+|. ++. ..+++.+||||+|.+..+++.||.+- -..++|++|.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~--vr~-~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQ--VRS-PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhh-cccccccceE--Eec-cCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEE
Confidence 366999999999999999999999 9999988854 332 34555599999999999999999544 666899999998
Q ss_pred eecCC
Q 039336 157 FGRNP 161 (167)
Q Consensus 157 ~a~~~ 161 (167)
--+..
T Consensus 363 ek~~~ 367 (419)
T KOG0116|consen 363 EKRPG 367 (419)
T ss_pred ecccc
Confidence 76543
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.91 E-value=1.5e-09 Score=83.02 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=68.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
..+||++-|..+++.+-|...|.+ |-.-...++ |+..+||+++||+||.|.++.++.+|+..|+|..++.|+|.+.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akv---iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKV---IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHh-ccchhhccc---cccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 378999999999999999999999 877666665 4568899999999999999999999999999999999998765
Q ss_pred e
Q 039336 157 F 157 (167)
Q Consensus 157 ~ 157 (167)
-
T Consensus 266 k 266 (290)
T KOG0226|consen 266 K 266 (290)
T ss_pred h
Confidence 3
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=4.4e-09 Score=87.96 Aligned_cols=70 Identities=33% Similarity=0.491 Sum_probs=63.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
+..+|+|-|||..++.++|..+|+. ||.|+.++ .+-..+|..||+|.|..+|++|+++|++..+.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir--------~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIR--------ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHh-hcchhhhh--------cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4578999999999999999999999 99997754 3556899999999999999999999999999999887
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=81.82 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=73.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
....+||++||.++++.+|+.+|.+ ||.|..+.++++ ..+.+++||+||.|.+.+++.+++ ...-..|.|+.+.|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d---~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vev 170 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYD---KTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEV 170 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeec---ccccccccceeeEeccccccceec-ccceeeecCceeeE
Confidence 3457999999999999999999999 998887766544 678999999999999999999987 77778899999999
Q ss_pred EeecCCCCC
Q 039336 156 QFGRNPAAA 164 (167)
Q Consensus 156 ~~a~~~~~~ 164 (167)
..|.++...
T Consensus 171 krA~pk~~~ 179 (311)
T KOG4205|consen 171 KRAIPKEVM 179 (311)
T ss_pred eeccchhhc
Confidence 999877543
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=2.2e-08 Score=77.18 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=71.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.....+||+|+.+.+|.+++...|.. ||.|..+.++.+ ...|+++|||||+|.+.+.+..|+. |+|..|.|+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d---~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKD---KFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeec-cCCccceeeecc---ccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 34577999999999999999999999 999976665433 5567899999999999999999996 999999999999
Q ss_pred EEeecCC
Q 039336 155 IQFGRNP 161 (167)
Q Consensus 155 v~~a~~~ 161 (167)
|.+.+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9987643
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=2e-08 Score=76.11 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=63.4
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
.+||++||+.+.+.+|..+|.. ||.+..+.+ -.||+||+|.+..+|..|+..|||..|.|-.+.|+++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~m-----------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKG-YGKIPDADM-----------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred ceeecccCCccchhHHHHHHhh-cccccccee-----------ecccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 5999999999999999999999 999966541 3688999999999999999999999999888999999
Q ss_pred cC
Q 039336 159 RN 160 (167)
Q Consensus 159 ~~ 160 (167)
+.
T Consensus 71 r~ 72 (216)
T KOG0106|consen 71 RG 72 (216)
T ss_pred cc
Confidence 85
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=5.1e-08 Score=81.90 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.+.+||++||..++++++.+++.. ||.+....++ .+..+|.++||||.+|-++.....|+..|||..++++.|.|+
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~lv---~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRLV---KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHh-cccchhheee---cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 367999999999999999999999 9999877654 335679999999999999999999999999999999999999
Q ss_pred eecC
Q 039336 157 FGRN 160 (167)
Q Consensus 157 ~a~~ 160 (167)
.|..
T Consensus 365 ~A~~ 368 (500)
T KOG0120|consen 365 RAIV 368 (500)
T ss_pred hhhc
Confidence 9853
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=3.8e-08 Score=74.09 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=69.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
...+||||+|+-..++++-|.++|-+ -|+|..+.| .....++.+ ||||.|.+..+..-|++-+||..+.++.|.
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~i----p~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGI----PSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeC----CCCccCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 34578999999999999999999999 999976653 334566777 999999999999999999999999999999
Q ss_pred EEeecCC
Q 039336 155 IQFGRNP 161 (167)
Q Consensus 155 v~~a~~~ 161 (167)
|.+-.+-
T Consensus 81 ~~~r~G~ 87 (267)
T KOG4454|consen 81 RTLRCGN 87 (267)
T ss_pred cccccCC
Confidence 9876543
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.54 E-value=5.9e-07 Score=57.98 Aligned_cols=69 Identities=29% Similarity=0.451 Sum_probs=46.9
Q ss_pred CEEEecCCCCCCCHHH----HHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 78 SVLYIKNLAKDVIPDD----FFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~----L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
+.|||.|||....... |+.++.. +|.-. +.| +.+.|+|.|.+.+.|.+|.+.|+|..+.|+.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkV-----l~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKV-----LSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--E-----EE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEE-----EEE-------eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 4699999999887765 4566667 76531 221 35899999999999999999999999999999
Q ss_pred EEEeec
Q 039336 154 IIQFGR 159 (167)
Q Consensus 154 ~v~~a~ 159 (167)
.|+|..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999984
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.51 E-value=4.9e-07 Score=73.59 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=67.0
Q ss_pred CCEEEecCCCCC-CCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 77 ASVLYIKNLAKD-VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 77 ~~~lfV~nLp~~-~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
++.|.|.||... +|.+-|..+|+- ||.|..+++... .+-.|.|.|.+...|+-|+..|+|..+.|++|+|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgv-YGdVqRVkil~n--------kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrv 367 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGV-YGDVQRVKILYN--------KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRV 367 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhh-hcceEEEEeeec--------CCcceeeeecchhHHHHHHHHhhcceecCceEEE
Confidence 578999999854 899999999999 999998885422 3478999999999999999999999999999999
Q ss_pred EeecCC
Q 039336 156 QFGRNP 161 (167)
Q Consensus 156 ~~a~~~ 161 (167)
.+++-.
T Consensus 368 t~SKH~ 373 (492)
T KOG1190|consen 368 TLSKHT 373 (492)
T ss_pred eeccCc
Confidence 999854
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.43 E-value=2.5e-07 Score=69.99 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=55.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
....+||||.||...+++++|+.+|+. |......++ + .......||+.|.+.+.|..||..|+|..|.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~----~---~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKI----R---ARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEE----e---cCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 345588999999999999999999999 766543332 1 2234679999999999999999999998873
No 90
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.38 E-value=1.8e-06 Score=65.22 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=68.3
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-C
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-G 150 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~-g 150 (167)
...+|+..||+.|||..++.+.|..+|.+ |+....++.+. .-++.|||+|.+...|..|...++|..+. .
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~q-f~g~keir~i~--------~~~~iAfve~~~d~~a~~a~~~lq~~~it~~ 211 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQ-FPGFKEIRLIP--------PRSGIAFVEFLSDRQASAAQQALQGFKITKK 211 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhh-CcccceeEecc--------CCCceeEEecchhhhhHHHhhhhccceeccC
Confidence 33567889999999999999999999999 98888776431 24789999999999999999999999986 8
Q ss_pred eeeEEEeec
Q 039336 151 KPMIIQFGR 159 (167)
Q Consensus 151 r~l~v~~a~ 159 (167)
..+.|.+|+
T Consensus 212 ~~m~i~~a~ 220 (221)
T KOG4206|consen 212 NTMQITFAK 220 (221)
T ss_pred ceEEecccC
Confidence 889998886
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.30 E-value=6.6e-07 Score=71.65 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeee-----eeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKC-----GLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~-----~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
..+.++||.+||..++..+|..+|.+ +|.|..=+- +...+...|+.+||-|.|+|.+...|+.|+..+++..+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34578999999999999999999999 998853111 011244568999999999999999999999999999999
Q ss_pred CeeeEEEeecCCC
Q 039336 150 GKPMIIQFGRNPA 162 (167)
Q Consensus 150 gr~l~v~~a~~~~ 162 (167)
|..|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999987654
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.30 E-value=1.6e-07 Score=78.70 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=70.4
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+++|+.-|+..++.-+|..+|+. +|.|..++++ .+..+++++|.|||+|.+.++...|| +|.|..+.|-+|.|+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~-~gkVrdVriI---~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSI-VGKVRDVRII---GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHh-hcCcceeEee---ccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 78999999999999999999999 9999999874 44678999999999999999999999 9999999999999987
Q ss_pred ec
Q 039336 158 GR 159 (167)
Q Consensus 158 a~ 159 (167)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 53
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.28 E-value=3.5e-06 Score=69.99 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
...|-+++|||.+|+++|..+|+. ++ |+.+. ....+|+..|-|||+|.+.++++.|+ ..+...+..|-|.|-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~-~~-I~~~~-----~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSN-CG-IENLE-----IPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVF 81 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhc-Cc-eeEEE-----EeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEE
Confidence 355778999999999999999988 66 44433 22457999999999999999999999 778788888998887
Q ss_pred eec
Q 039336 157 FGR 159 (167)
Q Consensus 157 ~a~ 159 (167)
-+-
T Consensus 82 ~~~ 84 (510)
T KOG4211|consen 82 TAG 84 (510)
T ss_pred ccC
Confidence 664
No 94
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.22 E-value=1.2e-06 Score=67.30 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=57.2
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeee-----cCCCCccc----EEEEEeCCHHHHHHHHHHhCCcee
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKL-----MQEGRMRG----QAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~-----~~~g~~kg----~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
-.||++|||+.+...-|+.+|+. ||.|-.+.+-..-.. ...|.+++ -|+|+|.+...|.++...|||..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999 999977764211000 01133343 356999999999999999999999
Q ss_pred CCee
Q 039336 149 KGKP 152 (167)
Q Consensus 149 ~gr~ 152 (167)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.18 E-value=7.7e-06 Score=68.03 Aligned_cols=78 Identities=22% Similarity=0.234 Sum_probs=61.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+...|-+++||+.+|+++|.++|+- .-.+.. -+ .+.....+++.|-|||+|.+.+.|++|| .-|...++.|-|.|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~-gi--~l~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEv 176 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPD-GI--LLPMDQRGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEV 176 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcC-Cccccc-ce--eeeccCCCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEe
Confidence 4567999999999999999999987 444433 11 1233456889999999999999999998 66777788888877
Q ss_pred Eee
Q 039336 156 QFG 158 (167)
Q Consensus 156 ~~a 158 (167)
-.|
T Consensus 177 F~S 179 (510)
T KOG4211|consen 177 FRS 179 (510)
T ss_pred ehh
Confidence 654
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.16 E-value=1.3e-06 Score=69.47 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=70.2
Q ss_pred CEEE-ecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 78 SVLY-IKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 78 ~~lf-V~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++| |++|++.++.++|+.+|.. +|.|..++++ ....+|..+|||||.|.....+..++.. +...+.|+++.+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~---~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLP---TDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred ccceeecccccccchHHHhhhccC-cCcceeeccC---CCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 4555 9999999999999999999 9999888764 2356899999999999999999999977 8888999999999
Q ss_pred eecCCCC
Q 039336 157 FGRNPAA 163 (167)
Q Consensus 157 ~a~~~~~ 163 (167)
+...+..
T Consensus 260 ~~~~~~~ 266 (285)
T KOG4210|consen 260 EDEPRPK 266 (285)
T ss_pred cCCCCcc
Confidence 9876643
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.05 E-value=1.4e-05 Score=65.29 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=69.9
Q ss_pred CCCCCCCC-CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 039336 67 MFKNYAAG-NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 145 (167)
Q Consensus 67 ~~~~~~~~-~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g 145 (167)
..+++... +|+.+|...|+|.++++++|+.+|.. -|...... +.-++.+-+|++.+.+.+.|-.|+..++.
T Consensus 403 gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vkaf-------kff~kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 403 GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKAF-------KFFQKDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred ccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEee-------eecCCCcceeecccCChhHhhhhcccccc
Confidence 34455554 66789999999999999999999999 66653322 22356788999999999999999999999
Q ss_pred ceeCCe-eeEEEeecC
Q 039336 146 YVFKGK-PMIIQFGRN 160 (167)
Q Consensus 146 ~~l~gr-~l~v~~a~~ 160 (167)
..+++. -|+|+|+++
T Consensus 475 h~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 475 HYLGENHHLRVSFSKS 490 (492)
T ss_pred ccCCCCceEEEEeecc
Confidence 998765 799999986
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=1.8e-05 Score=66.82 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=63.5
Q ss_pred CCCCCCCCEEEecCCCCCCCHH-------------HHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHH
Q 039336 71 YAAGNPASVLYIKNLAKDVIPD-------------DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAH 137 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~~~t~~-------------~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~ 137 (167)
...+.|...|...|+ ++.+ +++.-+++ ||.|..|.++..+........-|..||+|.+.++|+
T Consensus 393 q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQ 468 (500)
T ss_pred ccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHH
Confidence 344455566666664 3332 34556778 999999988765433334556788999999999999
Q ss_pred HHHHHhCCceeCCeeeEEEeec
Q 039336 138 RALNLVNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 138 ~Al~~l~g~~l~gr~l~v~~a~ 159 (167)
+|+++|+|..|.||.+...|.-
T Consensus 469 rA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 469 RAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHccCceeCCcEEEEEecC
Confidence 9999999999999999988753
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.00 E-value=1.9e-05 Score=53.65 Aligned_cols=71 Identities=23% Similarity=0.373 Sum_probs=42.9
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc-----eeCCe
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY-----VFKGK 151 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~-----~l~gr 151 (167)
++.|+|.+++..++-++|+.+|++ ||.|..|.+ . +.-..|||-|.+++.|+.|+..+... .+.+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~-------~--~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~ 70 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDF-------S--RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGK 70 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-S-S--EEEEE-----------TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSS
T ss_pred CeEEEEecCCCCcCHHHHHHHHHh-cCCcceEEe-------c--CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCc
Confidence 467999999999999999999999 998876542 1 23458899999999999999877433 45666
Q ss_pred eeEEEe
Q 039336 152 PMIIQF 157 (167)
Q Consensus 152 ~l~v~~ 157 (167)
.+.+..
T Consensus 71 ~~~~~v 76 (105)
T PF08777_consen 71 EVTLEV 76 (105)
T ss_dssp SEEEE-
T ss_pred eEEEEE
Confidence 655543
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=6.2e-06 Score=62.63 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=62.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..+.++|.|++..+...+|...|.+ +|.+.... -.++++||+|...++|.+|+..|+|..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~-----------~~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVD-----------ARRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcc-cCCCchhh-----------hhccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3477999999999999999999999 99984322 16899999999999999999999999999999998
Q ss_pred Eee
Q 039336 156 QFG 158 (167)
Q Consensus 156 ~~a 158 (167)
..+
T Consensus 166 ~~~ 168 (216)
T KOG0106|consen 166 EKN 168 (216)
T ss_pred ccc
Confidence 544
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.93 E-value=5.2e-05 Score=65.72 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=66.2
Q ss_pred CCC-EEEecCCCCCCCHHHHHHHHhhccCCee-eeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PAS-VLYIKNLAKDVIPDDFFFIFGSLFGSID-AAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~-~lfV~nLp~~~t~~~L~~~F~~~~G~i~-~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
+++ .|-+.|+|++++-+||.++|.. |-.+. +|. ++....|...|-|-|.|.+.+.|.+|...|++..|..|.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~d-Y~~~p~sI~----~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V 939 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFND-YEPDPNSIR----IRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVV 939 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcc-cccCCCcee----EeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeE
Confidence 445 7889999999999999999988 76553 222 4566789999999999999999999999999999999998
Q ss_pred EEEe
Q 039336 154 IIQF 157 (167)
Q Consensus 154 ~v~~ 157 (167)
.+.+
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8764
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.87 E-value=7.7e-05 Score=59.83 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCCCEEEecCCC----CCCC-------HHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 039336 75 NPASVLYIKNLA----KDVI-------PDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV 143 (167)
Q Consensus 75 ~~~~~lfV~nLp----~~~t-------~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l 143 (167)
...++|.++|+= +..+ .++|..--.+ ||.|..+.+. ..++.|.+-|.|.+.+.|..||+.|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K-~G~v~~vvv~-------d~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEK-FGQVRKVVVY-------DRHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHH-hCCcceEEEe-------ccCCCceeEEEeCChHHHHHHHHHh
Confidence 345889999972 1233 2345556778 9999877532 3478999999999999999999999
Q ss_pred CCceeCCeeeEEEeecCC
Q 039336 144 NGYVFKGKPMIIQFGRNP 161 (167)
Q Consensus 144 ~g~~l~gr~l~v~~a~~~ 161 (167)
+|..|.||.|..+..-.+
T Consensus 335 ~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDGK 352 (382)
T ss_pred cCeeecceEEEEEEeCCc
Confidence 999999999998876544
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.86 E-value=4.5e-05 Score=61.08 Aligned_cols=81 Identities=19% Similarity=0.404 Sum_probs=60.1
Q ss_pred CCEEEecCCCCCCCHHHH------HHHHhhccCCeeeeeeeeeeeecCCCCccc-E-EEEEeCCHHHHHHHHHHhCCcee
Q 039336 77 ASVLYIKNLAKDVIPDDF------FFIFGSLFGSIDAAKCGLTVKLMQEGRMRG-Q-AFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L------~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg-~-aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
..-+||-+||+.+..++. .++|++ ||.|..+.+.. +........+ + .||+|...++|.+||.+.+|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNk--kt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNK--KTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecc--cccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 356899999998877662 478999 99997665321 1100011122 2 39999999999999999999999
Q ss_pred CCeeeEEEeecC
Q 039336 149 KGKPMIIQFGRN 160 (167)
Q Consensus 149 ~gr~l~v~~a~~ 160 (167)
.||-|+..|...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999988654
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=8.1e-05 Score=63.14 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=57.8
Q ss_pred CCEEEecCCCCCCCHHH-------HHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-
Q 039336 77 ASVLYIKNLAKDVIPDD-------FFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF- 148 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~-------L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l- 148 (167)
.+.|+|-|+|- +..+- |..+|++ +|.+....++++ ..|..+||.|++|.+..+|+.|++.|||+.|
T Consensus 58 D~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~----e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPV-VGPARLEKLKKVLTKVFSK-AGKIVNMYYPID----EEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcc-cChhHHHHHHHHHHHHHHh-hccccceeeccC----ccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 46799999984 33322 4578999 999977765533 4566999999999999999999999999997
Q ss_pred CCeeeEEEe
Q 039336 149 KGKPMIIQF 157 (167)
Q Consensus 149 ~gr~l~v~~ 157 (167)
..+++.|..
T Consensus 132 knHtf~v~~ 140 (698)
T KOG2314|consen 132 KNHTFFVRL 140 (698)
T ss_pred ccceEEeeh
Confidence 456665543
No 105
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.73 E-value=1.9e-05 Score=60.92 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=52.0
Q ss_pred HHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 92 DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 92 ~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
+++...|...||.|+... |.....-+..|-+||.|...++|++|+..|||.++.|++|+..+.
T Consensus 83 Ed~f~E~~~kygEiee~~----Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN----VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhh----hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 345555663399998765 344556778999999999999999999999999999999999885
No 106
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.72 E-value=6.3e-05 Score=64.10 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=65.8
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---C
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF---K 149 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l---~ 149 (167)
...++..|||.||-.-.|.-+|+.++++.+|.|... | -.+.+..|||.|.+.+.|.....+|||..+ +
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W--------mDkIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W--------MDKIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-H--------HHHhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 455678999999999999999999999746666543 2 225788999999999999999999999886 6
Q ss_pred CeeeEEEeecC
Q 039336 150 GKPMIIQFGRN 160 (167)
Q Consensus 150 gr~l~v~~a~~ 160 (167)
++.|.+.|+..
T Consensus 511 PK~L~adf~~~ 521 (718)
T KOG2416|consen 511 PKHLIADFVRA 521 (718)
T ss_pred CceeEeeecch
Confidence 78899999864
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.65 E-value=8e-05 Score=60.59 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=64.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
..+|-+++||+..+.++|..+|.. |..-.... .+.+.....|+..|-|||+|.+.+.|..|....+.+...+|.|.|-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~-gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGD-FATDIRFQ-GVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHH-Hhhhcccc-eeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 456899999999999999999988 75432111 1235567789999999999999999999999999888888888775
Q ss_pred ee
Q 039336 157 FG 158 (167)
Q Consensus 157 ~a 158 (167)
-+
T Consensus 358 p~ 359 (508)
T KOG1365|consen 358 PC 359 (508)
T ss_pred ec
Confidence 43
No 108
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.58 E-value=7.9e-05 Score=61.32 Aligned_cols=73 Identities=29% Similarity=0.442 Sum_probs=57.6
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeeeEEEe
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FKGKPMIIQF 157 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~-l~gr~l~v~~ 157 (167)
.+|++||.+.++..+|..+|.. --.--+.. ++ --.|||||.+.+..+|.+|++.++|.. +.|+++.|..
T Consensus 3 klyignL~p~~~psdl~svfg~-ak~~~~g~----fl-----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGD-AKIPGSGQ----FL-----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred cccccccCCCCChHHHHHHhcc-ccCCCCcc----ee-----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 5899999999999999999875 21000111 01 136899999999999999999999987 8999999988
Q ss_pred ecCC
Q 039336 158 GRNP 161 (167)
Q Consensus 158 a~~~ 161 (167)
+.++
T Consensus 73 sv~k 76 (584)
T KOG2193|consen 73 SVPK 76 (584)
T ss_pred hhhH
Confidence 7554
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.56 E-value=0.00071 Score=55.03 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=68.9
Q ss_pred CCCCCCCEEEecCCCCC-CCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 72 AAGNPASVLYIKNLAKD-VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~-~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
.+..+++.+.|.+|.-. ++-+.|..+|-. ||.|..++.+ . .-.|.|.|++.+....++|+..||+..+.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFm------k--Tk~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFM------K--TKPGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEe------e--cccceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 44567899999999854 677889999999 9999887753 1 136899999999999999999999999999
Q ss_pred eeeEEEeecCC
Q 039336 151 KPMIIQFGRNP 161 (167)
Q Consensus 151 r~l~v~~a~~~ 161 (167)
..|.|.+++..
T Consensus 353 ~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 353 GKLNVCVSKQN 363 (494)
T ss_pred ceEEEeecccc
Confidence 99999988743
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=9.6e-05 Score=65.57 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=67.2
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--e
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--K 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g--r 151 (167)
..+.+.+|+++|+.++....|...|.. ||.|..|- +. +.-.||||.|.+...|+.|+..|-|..|+| +
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Id----y~-----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIID----YR-----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhc-cCcceeee----cc-----cCCcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 345688999999999999999999999 99997543 11 456799999999999999999999999976 7
Q ss_pred eeEEEeecCC
Q 039336 152 PMIIQFGRNP 161 (167)
Q Consensus 152 ~l~v~~a~~~ 161 (167)
+|+|.||...
T Consensus 522 r~rvdla~~~ 531 (975)
T KOG0112|consen 522 RLRVDLASPP 531 (975)
T ss_pred ccccccccCC
Confidence 7999999754
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00029 Score=59.14 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=57.4
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 039336 71 YAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNL 142 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~ 142 (167)
..+..|.+|||||+||.-++..+|..+|...||.|..+-| | ++..-+.++|-|=|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGI--D-tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGI--D-TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEe--c-cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3556788999999999999999999999977999987763 3 2233467899999999999999999843
No 112
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.52 E-value=0.00014 Score=59.27 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=64.0
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
.|-|.||.+.+|.++++.+|+. .|.|..+++.-.+.+....-....|||.|.+..++..|- .|.+++|-++.|.|-.+
T Consensus 9 vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 6899999999999999999999 999988876433332233456779999999999999884 89999998988877654
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.51 E-value=0.00074 Score=48.26 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=50.2
Q ss_pred CCCCCEEEecCCCC-----CCCHH----HHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 74 GNPASVLYIKNLAK-----DVIPD----DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 74 ~~~~~~lfV~nLp~-----~~t~~----~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
++|..||.|.=+.+ ..-.+ +|.+.|.. ||.+.-+|+. .+.-+|+|.+..+|.+|+ .++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv-----------~~~mwVTF~dg~sALaal-s~d 90 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFV-----------GDTMWVTFRDGQSALAAL-SLD 90 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEE-----------TTCEEEEESSCHHHHHHH-HGC
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEe-----------CCeEEEEECccHHHHHHH-ccC
Confidence 45667777765551 12233 56677888 9988655422 357899999999999999 999
Q ss_pred CceeCCeeeEEEeecCCC
Q 039336 145 GYVFKGKPMIIQFGRNPA 162 (167)
Q Consensus 145 g~~l~gr~l~v~~a~~~~ 162 (167)
|..++|+.|+|.+-.+.+
T Consensus 91 g~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 91 GIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp CSEETTEEEEEEE-----
T ss_pred CcEECCEEEEEEeCCccH
Confidence 999999999998765543
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.38 E-value=0.0011 Score=44.63 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=49.6
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeee----eecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTV----KLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i----~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
+.|.|-+.|+. ....+...|++ ||.|.+..-...- .........++-.|.|.++.+|.+|| ..||..|.|.-|
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 45778888876 56778889999 9999544200000 00011235678999999999999999 999999988654
Q ss_pred -EEEee
Q 039336 154 -IIQFG 158 (167)
Q Consensus 154 -~v~~a 158 (167)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45554
No 115
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.00071 Score=40.17 Aligned_cols=52 Identities=19% Similarity=0.313 Sum_probs=40.1
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHH
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRAL 140 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al 140 (167)
+.|-|.+.+.+.. +.+..+|.+ ||.|..+.+. ....+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~~---------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFAS-FGEIVDIYVP---------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHh-cCCEEEEEcC---------CCCcEEEEEECCHHHHHhhC
Confidence 4577888886655 456668989 9999765532 45789999999999999985
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0016 Score=54.80 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCccc---EEEEEeCCHHHHHHHHHHhC
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRG---QAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg---~aFV~f~~~~~A~~Al~~l~ 144 (167)
-++.|||++||++++++.|...|.. ||.+. +.++........-.++| |+|+.|.+..+.+.-+.++.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~-FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQ-FGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccceeecCCCccccHHHHHhhccc-ccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3578999999999999999999999 99873 11111000001123456 99999999998887666654
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.30 E-value=0.0017 Score=52.97 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=63.3
Q ss_pred CCCCCCCEEEec--CCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 72 AAGNPASVLYIK--NLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 72 ~~~~~~~~lfV~--nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
.+..++..|.+. |--+.+|-+-|+.+... .|.|.++.|. + ++--.|.|+|.+.+.|++|..+|||..|.
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIf-----k---kngVQAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIF-----K---KNGVQAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEE-----e---ccceeeEEeechhHHHHHHHhhccccccc
Confidence 344566666655 44456899999999999 9999766432 2 24568999999999999999999999974
Q ss_pred -C-eeeEEEeecCC
Q 039336 150 -G-KPMIIQFGRNP 161 (167)
Q Consensus 150 -g-r~l~v~~a~~~ 161 (167)
| ..|+|+||++.
T Consensus 186 sGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPT 199 (494)
T ss_pred ccceeEEEEecCcc
Confidence 3 78999999864
No 118
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.27 E-value=0.0003 Score=56.71 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=57.9
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCe--eeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSI--DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i--~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.++||+||-|.+|.+||.+.+.. .|.- ..++. +-....|.++|||+|...+..+..+.++.|-...|+|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKF---FENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKF---FENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhh---hhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 56999999999999999988876 6643 22222 122346999999999999999999999999988898865444
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.21 E-value=0.00048 Score=56.20 Aligned_cols=67 Identities=24% Similarity=0.283 Sum_probs=48.7
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCe----eeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSI----DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i----~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
.|-.++||++++..++..+|.+ -..| ..+- +.....|+..|=|||.|..+++|+.|| .-|...++-|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~-~cpv~~g~egvL----FV~rpdgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqR 233 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGP-PCPVTGGTEGVL----FVTRPDGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQR 233 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCC-CCcccCCccceE----EEECCCCCcccceEEEecCHHHHHHHH-HHHHHHHhHH
Confidence 4667899999999999999974 2222 2221 233568999999999999999999998 3343333333
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.09 E-value=0.00027 Score=62.46 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=66.0
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
..|||+|.|+..|.+.|+.+++. +|.+.+.++ .....|+++|-|||.|.+..+|.+++...++..+.-+.+.|..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~----vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASK-TGNVTSLRL----VTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccc-cCCccccch----hhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 56899999999999999999999 999987763 2346799999999999999999999988888877777777776
Q ss_pred ec
Q 039336 158 GR 159 (167)
Q Consensus 158 a~ 159 (167)
+.
T Consensus 812 sn 813 (881)
T KOG0128|consen 812 SN 813 (881)
T ss_pred cC
Confidence 43
No 121
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.03 E-value=0.0044 Score=44.17 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=53.2
Q ss_pred CCCCCEEEecCCCCCCC-HHHH---HHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 74 GNPASVLYIKNLAKDVI-PDDF---FFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t-~~~L---~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
.+|=.||.|+=|...+. .+|| ...++. ||+|.++-. -.+..|.|.|.+..+|-+|+.+++. ..-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~----------cGrqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTL----------CGRQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeee----------cCCceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 34557888876665542 2344 455667 999977642 2567899999999999999999986 666
Q ss_pred CeeeEEEee
Q 039336 150 GKPMIIQFG 158 (167)
Q Consensus 150 gr~l~v~~a 158 (167)
|..+.++|-
T Consensus 151 gtm~qCsWq 159 (166)
T PF15023_consen 151 GTMFQCSWQ 159 (166)
T ss_pred CceEEeecc
Confidence 777887774
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=6.5e-05 Score=66.23 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=54.2
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 145 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g 145 (167)
.++||+||+..+.+.+|...|+. +|.+..+++. .....++.||+||+.|..+++|.+|+....+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCc-cchhhhHHHH---HHhhccccccceeeEeecCCchhhhhhhhhh
Confidence 67899999999999999999999 9999877643 1245789999999999999999999944443
No 123
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.84 E-value=0.0013 Score=54.25 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=52.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeee--eeecCCCCc--------ccEEEEEeCCHHHHHHHHHHhC
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLT--VKLMQEGRM--------RGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~--i~~~~~g~~--------kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
++++|.+-|||.+-.-+-|.++|+. +|.|..|+|.-. |-....|.+ +-+|||+|...+.|.+|.+.|+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 6799999999999888999999999 999999886311 000011222 4589999999999999997775
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.75 E-value=0.0057 Score=48.41 Aligned_cols=64 Identities=22% Similarity=0.155 Sum_probs=47.8
Q ss_pred HHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeec
Q 039336 93 DFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 93 ~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~ 159 (167)
++.....+ ||.|..|.|... ....-.-----||+|...++|.+|+-.|||..|+||.+..+|..
T Consensus 302 e~keEceK-yg~V~~viifei--p~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEK-YGKVGNVIIFEI--PSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHh-hcceeeEEEEec--CCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45566778 999987764321 11112223457999999999999999999999999999988853
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.67 E-value=0.0025 Score=49.41 Aligned_cols=74 Identities=24% Similarity=0.393 Sum_probs=59.0
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC--Cc--eeCCeee
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN--GY--VFKGKPM 153 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~--g~--~l~gr~l 153 (167)
..|||.||+.-++.+.|...|+. ||.|....+.+ ...++..+-++|.|.....|..|+..++ |+ ...+++.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~v----D~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRR-FGPIERAVAKV----DDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhh-cCccchheeee----cccccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 67999999999999999999999 99998765432 3567888899999999999999998884 22 2345555
Q ss_pred EEE
Q 039336 154 IIQ 156 (167)
Q Consensus 154 ~v~ 156 (167)
-|.
T Consensus 107 ~Ve 109 (275)
T KOG0115|consen 107 GVE 109 (275)
T ss_pred CCC
Confidence 444
No 126
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.56 E-value=0.0065 Score=45.05 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=50.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCe---eeeeeeeeeeecCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeC--
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSI---DAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHRALNLVNGYVFK-- 149 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i---~~~~~~~~i~~~~~-g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~-- 149 (167)
.+..|.||+||+.+|++++...++..++.- .++... +..... ...-.-|||.|.+.+++..-...++|..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~--~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGK--YGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEE--ES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecC--CCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 346799999999999999998666534433 222211 111111 123457899999999999999999998863
Q ss_pred -C--eeeEEEeecC
Q 039336 150 -G--KPMIIQFGRN 160 (167)
Q Consensus 150 -g--r~l~v~~a~~ 160 (167)
| .+-.|++|-.
T Consensus 84 kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 84 KGNEYPAVVEFAPY 97 (176)
T ss_dssp TS-EEEEEEEE-SS
T ss_pred CCCCcceeEEEcch
Confidence 2 3456777754
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.44 E-value=0.019 Score=37.16 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=40.6
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
..+||. .|..+-..||..+|+. ||.|. +.++ +-.-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFsp-fG~I~-VsWi----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSP-FGQIY-VSWI----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCC-CCCEE-EEEE----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhcc-CCcEE-EEEE----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 456676 9999999999999999 99983 2221 45689999999999999998876
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.0064 Score=51.73 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce---eC-C
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV---FK-G 150 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~---l~-g 150 (167)
.+.+++-|.|+|...|...|.+.-.+-.|...-+.+++| ..+..+-|||||-|.+++++..+.+++||+. |+ .
T Consensus 386 ~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiD---F~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~ 462 (549)
T KOG4660|consen 386 CPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPID---FKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSE 462 (549)
T ss_pred CchhhhHhhccCchhhHHhhhhhhccccCccceEEeccc---cccccccceeEEeecCHHHHHHHHHHHcCCchhhhcce
Confidence 345778888888888877777664444677777777655 4466789999999999999999999999987 33 4
Q ss_pred eeeEEEeecCC
Q 039336 151 KPMIIQFGRNP 161 (167)
Q Consensus 151 r~l~v~~a~~~ 161 (167)
+...+.||+-+
T Consensus 463 Kia~itYArIQ 473 (549)
T KOG4660|consen 463 KIASITYARIQ 473 (549)
T ss_pred eeeeeehhhhh
Confidence 55677777644
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.32 E-value=0.0029 Score=55.26 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeee-eeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA-AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~-~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.+|||..||..++..++..+|.. .-.|+. |. +....+++.++-|||.|..+..+..|+..-+.+.++.|.|
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~-~~~Ved~I~----lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~i 506 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMG-AAAVEDFIE----LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRII 506 (944)
T ss_pred CccceEEeccCCccccccchhhhhhh-hhhhhheeE----eccCCcccccchhhheeccccccchhhhcccccccCceEE
Confidence 44578999999999999999999988 555544 43 3445688999999999999998888876666666778888
Q ss_pred EEEe
Q 039336 154 IIQF 157 (167)
Q Consensus 154 ~v~~ 157 (167)
+|.-
T Consensus 507 rv~s 510 (944)
T KOG4307|consen 507 RVDS 510 (944)
T ss_pred Eeec
Confidence 8874
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.12 E-value=0.085 Score=36.10 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=43.8
Q ss_pred CEEEecCCC-CCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 78 SVLYIKNLA-KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 78 ~~lfV~nLp-~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
+++.|--.| +.++.++|..+.+..-..|..+++. +....++-.+.+.|.+..+|......+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~rii-----rd~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRII-----RDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEe-----eCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444444444 4455566655544422345454432 123346788999999999999999999999975
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.08 E-value=0.0021 Score=51.53 Aligned_cols=83 Identities=19% Similarity=0.373 Sum_probs=57.8
Q ss_pred CEEEecCCCCCCCHHHHH---HHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 78 SVLYIKNLAKDVIPDDFF---FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~---~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.-+||-+|+.....+.+. ..|++ ||.|..+....+-.....-....-++|+|...++|..||...+|..+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 447888898876555443 56888 99997765322110000111122489999999999999999999999999988
Q ss_pred EEeecCC
Q 039336 155 IQFGRNP 161 (167)
Q Consensus 155 v~~a~~~ 161 (167)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8876544
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.04 E-value=0.0015 Score=58.32 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
..+.|||++||+..+++.+|+..|.. +|.+..+. |....-+..--||||.|.+...+-.|+..+.|..|..-.++
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VD----iKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVD----IKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhh-hccccccc----cccCCCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 44589999999999999999999999 99998765 33333455667999999999999999999998887544555
Q ss_pred EEee
Q 039336 155 IQFG 158 (167)
Q Consensus 155 v~~a 158 (167)
+-+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 5444
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.97 E-value=0.051 Score=33.25 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=39.8
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhcc-C--CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLF-G--SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV 143 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~-G--~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l 143 (167)
..|+|+++. .++.+++..+|.. | + ....+.++ .-.-|-|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~-y~~~~~~~~IEWI----------dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSE-YFDEEGPFRIEWI----------DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHH-hcccCCCceEEEe----------cCCcEEEEECCHHHHHHHHHcC
Confidence 359999996 7899999999999 6 2 22234432 1234679999999999999764
No 134
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.92 E-value=0.038 Score=34.26 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 88 DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 88 ~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.++-.+++..|.+ |+-.. |+...+|- ||.|.+..+|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~-y~~~~-------I~~d~tGf-----YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRK-YRWDR-------IRDDRTGF-----YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhc-CCcce-------EEecCCEE-----EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999988 88642 34444444 89999999999999999999998887765
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.28 E-value=0.074 Score=39.73 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeeeEEEeecC
Q 039336 90 IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN--GYVFKGKPMIIQFGRN 160 (167)
Q Consensus 90 t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~--g~~l~gr~l~v~~a~~ 160 (167)
....|+.+|.. |+.+....+. ++-+-..|.|.+.+.|.+|...|+ +..+.|..|+|.|+..
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L---------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPL---------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEE---------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHh-cCCceEEEEc---------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34788999999 9987554321 345567899999999999999999 9999999999999853
No 136
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.17 E-value=0.086 Score=39.35 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=51.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
..|.|++||+..+..+|+.+..+ -|.+....+. --|++.|+|-..++.+-|+..|....+.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~----------rDg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQ----------RDGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHh-hCCeeeeeee----------cccceeeeeeehhhHHHHHHhhcccccc
Confidence 56899999999999999999999 9998554421 2358999999999999999999877653
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.02 E-value=0.022 Score=49.50 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 69 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
+-.++.++..++||+|+...+..+-+..++.. +|-|.+++.. -|||+.|..+.-+.+|+..++-..+
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~------------~fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRD------------KFGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhh------------hhcccchhhHHHHHHHHHHhcccCC
Confidence 34455567789999999999999999999999 9998665421 1999999999999999988888888
Q ss_pred CCeeeEEEe
Q 039336 149 KGKPMIIQF 157 (167)
Q Consensus 149 ~gr~l~v~~ 157 (167)
+|..|.+..
T Consensus 99 ~~~kl~~~~ 107 (668)
T KOG2253|consen 99 DDQKLIENV 107 (668)
T ss_pred Ccchhhccc
Confidence 887766544
No 138
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.19 Score=43.42 Aligned_cols=82 Identities=29% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHHhhcc----CCeeeeeeeee-----------eeec--------------------
Q 039336 74 GNPASVLYIKNLAKD-VIPDDFFFIFGSLF----GSIDAAKCGLT-----------VKLM-------------------- 117 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~-~t~~~L~~~F~~~~----G~i~~~~~~~~-----------i~~~-------------------- 117 (167)
+.++++|-|-||.|+ +...+|..+|+. | |.|.+|.|-.. |..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nS-FlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNS-FLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHh-hcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 456788999999987 788999999887 5 56766654200 0000
Q ss_pred ------------CCCCc-ccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 118 ------------QEGRM-RGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 118 ------------~~g~~-kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.-++. --||.|+|.+...|...+..++|..|...-+.+.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 00111 1388999999999999999999999864443333
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.00 E-value=0.039 Score=46.40 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=57.8
Q ss_pred CEEEecCCCCCC-CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 78 SVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 78 ~~lfV~nLp~~~-t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+.|-+.-.|+.. +-.+|...|.+ ||.|..|.+- .+--.|.|+|.+...|-.|. ..+|..|+||.|+|-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~-fG~i~n~qv~---------~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQ-FGEIENIQVD---------YSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLF 441 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhh-cCcccccccc---------Cchhhheeeeeccccccchh-ccccceecCceeEEE
Confidence 556666667665 55789999999 9999877632 23557899999999998886 899999999999999
Q ss_pred eecC
Q 039336 157 FGRN 160 (167)
Q Consensus 157 ~a~~ 160 (167)
|-..
T Consensus 442 whnp 445 (526)
T KOG2135|consen 442 WHNP 445 (526)
T ss_pred EecC
Confidence 8664
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.86 E-value=0.093 Score=41.87 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..+++|++++.+.+.+.+...+|.. +|....+.. ........++|++++.|...+.+..|+.....+.+.++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~-~g~~~~~~~---S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSE-AGLRVDARS---SSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchh-hcCcccchh---hhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 3578999999999988888888888 887655442 233556789999999999999999999554445666666555
Q ss_pred Eeec
Q 039336 156 QFGR 159 (167)
Q Consensus 156 ~~a~ 159 (167)
.+..
T Consensus 163 dl~~ 166 (285)
T KOG4210|consen 163 DLNT 166 (285)
T ss_pred cccc
Confidence 5543
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.68 E-value=0.31 Score=40.91 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=55.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
++.|+|-.+|..++--||-.+.....-.|..++++ + ..-.++-.+.|.|.+..+|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~iriv---R--d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIV---R--DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEe---e--cCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999887734556666643 2 223456678999999999999999999999753
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.68 E-value=0.052 Score=48.62 Aligned_cols=72 Identities=26% Similarity=0.346 Sum_probs=57.6
Q ss_pred EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--CCeeeEEEe
Q 039336 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF--KGKPMIIQF 157 (167)
Q Consensus 80 lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l--~gr~l~v~~ 157 (167)
.++-|.+-..+...|..+|+. ||.+.++. +-+.-..|.|.|...+.|-.|+++++|..+ .|-+.+|.|
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~-yg~v~s~w---------tlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSD-YGSVASAW---------TLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhcccccchHHHHHHHHHh-hcchhhhe---------ecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEe
Confidence 344455556777889999999 99986654 223557899999999999999999999984 688899999
Q ss_pred ecCC
Q 039336 158 GRNP 161 (167)
Q Consensus 158 a~~~ 161 (167)
|+.-
T Consensus 371 ak~~ 374 (1007)
T KOG4574|consen 371 AKTL 374 (1007)
T ss_pred cccc
Confidence 9854
No 143
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.00 E-value=0.28 Score=39.18 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=45.6
Q ss_pred EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 80 LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 80 lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
|-|-+.|+.- -.-+..+|.+ ||.|.. ..++....+-+|.|.+.-+|++|| ..||..|.|-.
T Consensus 200 VTVfGFppg~-~s~vL~~F~~-cG~Vvk---------hv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSR-CGEVVK---------HVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDV 260 (350)
T ss_pred EEEeccCccc-hhHHHHHHHh-hCeeee---------eecCCCCceEEEEecchhHHHHhh-hhcCeeeccce
Confidence 4455666543 3456678999 999832 224466779999999999999999 89999998855
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.90 E-value=0.57 Score=29.41 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=38.7
Q ss_pred EEEecCCC--CCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 79 VLYIKNLA--KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 79 ~lfV~nLp--~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+||| |+- ..++..+|..++.. .+.|..-.+ -.|.. ...|+||+-.. +.|..++..|++..+.|++|.|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~-~~gi~~~~I-G~I~I-----~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICN-EAGIPGRDI-GRIDI-----FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHT-CTTB-GGGE-EEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHh-ccCCCHHhE-EEEEE-----eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 4555 333 35888999999988 655543222 11111 35689998865 57888999999999999999998
Q ss_pred ee
Q 039336 157 FG 158 (167)
Q Consensus 157 ~a 158 (167)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 76
No 145
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.35 Score=40.10 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=46.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
.+.|-|.++|...-.+||...|.. ||.- .++ |... -...||-.|.+...|..|| .+.--++.=|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~-yq~k-gfd----IkWv----DdthalaVFss~~~AaeaL-t~kh~~lKiRp 455 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFET-YQNK-GFD----IKWV----DDTHALAVFSSVNRAAEAL-TLKHDWLKIRP 455 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHH-hhcC-Cce----eEEe----ecceeEEeecchHHHHHHh-hccCceEEeee
Confidence 378999999999989999999999 8653 222 2222 3567999999999999999 45333333333
No 146
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.70 E-value=0.51 Score=40.75 Aligned_cols=69 Identities=14% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhh-ccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeee
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGS-LFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY--VFKGKPM 153 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~-~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~--~l~gr~l 153 (167)
.|.|.++-||..+-.++++.+|.. .+-.+.+|... .+- -=||+|.+..+|+.|+..|... .|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa---------~N~-nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFA---------HND-NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee---------ecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 477889999999999999999964 13344444321 122 2389999999999999887642 3666665
Q ss_pred EE
Q 039336 154 II 155 (167)
Q Consensus 154 ~v 155 (167)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 43
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.51 E-value=0.093 Score=43.28 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=52.2
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
.+++|.+|+..+...++-+.|.. +|.+.+.+ +..|-...+|-+.|....+...|+ .++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r-~Gev~ya~-------~ask~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFER-KGEVSYAH-------TASKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhh-cchhhhhh-------hhccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 77999999999999999999999 99987655 235666778889999999988888 66776654
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.46 E-value=1.7 Score=34.73 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=35.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCH
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~ 133 (167)
+-||++|||.++.-.||+..+.+ .|.+- +.+.. . .++|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~-~~~~p-----m~isw--k-g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRK-RECTP-----MSISW--K-GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHh-cCCCc-----eeEee--e-cCCcceeEecCCc
Confidence 55999999999999999999988 66542 22222 2 2578899999774
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=77.29 E-value=0.18 Score=42.16 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=59.2
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+.+-|+|+|+....+-|..++.. ||.+..|..+ . +..-.-..-|+|...+.+..||..++|..|....++|.|
T Consensus 81 rk~Qirnippql~wevld~Ll~q-yg~ve~~eqv----n--t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQV----N--TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhh----c--cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 45889999999999999999999 9999887642 1 111223345789999999999999999999888888776
Q ss_pred e
Q 039336 158 G 158 (167)
Q Consensus 158 a 158 (167)
-
T Consensus 154 i 154 (584)
T KOG2193|consen 154 I 154 (584)
T ss_pred C
Confidence 4
No 150
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=75.07 E-value=11 Score=26.02 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 88 DVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 88 ~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
.++.++|++-++++|-.-.++.+++.++.. .+|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 578899999988877665555555555544 45788889865 667666653
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=74.78 E-value=0.81 Score=35.12 Aligned_cols=66 Identities=26% Similarity=0.387 Sum_probs=52.1
Q ss_pred CEEEecC----CCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 78 SVLYIKN----LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 78 ~~lfV~n----Lp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
.+++.|| |...++.+.+...|+. -|.+..+++.. ...|+++.++|+.+.-..+.-.++..+++..+
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~----~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPT----DNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecc-cCCCCCccccc----cccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 4466677 6677889999999999 99998877542 23488999999999988888888877777654
No 152
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.01 E-value=9.5 Score=30.50 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=51.7
Q ss_pred CCCCCCCEEEecCCCCC------------CCHHHHHHHHhhccCCeeeeeeeeeeeecC----CCCccc-----EEE---
Q 039336 72 AAGNPASVLYIKNLAKD------------VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ----EGRMRG-----QAF--- 127 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~------------~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~----~g~~kg-----~aF--- 127 (167)
.|+....|||+.+||-. -+++-|+..|.. ||.|..+.++ +.+.. +|+..| |+|
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~ea-fg~ir~vdip--icdplr~~mn~kisgiq~~gfg~g~d 220 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEA-FGEIRNVDIP--ICDPLREEMNGKISGIQFHGFGFGGD 220 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHH-hccceecCCc--ccchhHHHhcCccccceeeccccCcc
Confidence 34444567888887732 356779999999 9999887765 33321 355433 433
Q ss_pred ------EEeCCHHHHHHHHHHhCCcee----CC----eeeEEEeecCC
Q 039336 128 ------VTFPSVELAHRALNLVNGYVF----KG----KPMIIQFGRNP 161 (167)
Q Consensus 128 ------V~f~~~~~A~~Al~~l~g~~l----~g----r~l~v~~a~~~ 161 (167)
|.|..--....|+.+|.|..+ .| ..++|+|.+++
T Consensus 221 lffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 221 LFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 333333334456667766553 22 35777776654
No 153
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=64.64 E-value=24 Score=23.57 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 88 DVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 88 ~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
..+-.+|+.-+.++|+.=...-++..+... ..|.+.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 567889988888877743333332222221 23667777765 667666654
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=63.65 E-value=11 Score=27.99 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=44.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
...+..+++++++..++...+...|.. +|.+....+... ........+.++.+.....+..++.........+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPS---KDGKIPKSRSFVGNEASKDALESNSRGNKKKILG 294 (306)
T ss_pred ccccceeeccccccccchhHHHHhccc-cccceeeeccCC---CCCcccccccccchhHHHhhhhhhccccceeecc
Confidence 345678999999999999999999999 999854442210 1112233444444444445554444444333333
No 155
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=62.47 E-value=33 Score=28.99 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=23.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 125 QAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 125 ~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
||.|.|.+...+...+.+++|..+..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred EEEEEeccchhhHHHHhccCcccccc
Confidence 78899999999999999999988754
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.91 E-value=11 Score=25.96 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=24.6
Q ss_pred EEEecCCCCC---------CCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCH
Q 039336 79 VLYIKNLAKD---------VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133 (167)
Q Consensus 79 ~lfV~nLp~~---------~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~ 133 (167)
++.|-|++.. .+...|...|+. |.+++ ++. ... ...+.|++.|.|..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~-f~p~k-v~~----l~~-~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAE-FNPLK-VKP----LYG-KQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEE----EEE-TTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHh-cCCce-eEE----CcC-CCCCcEEEEEEECCC
Confidence 4566777543 356789999999 98874 332 222 235689999999774
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.55 E-value=29 Score=27.92 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=55.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeee----cCCCCcccEEEEEeCCHHHHHHH----HHHhCCc--
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKL----MQEGRMRGQAFVTFPSVELAHRA----LNLVNGY-- 146 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~----~~~g~~kg~aFV~f~~~~~A~~A----l~~l~g~-- 146 (167)
.+.|...|+..+++--.+-..|.+ ||+|++++++-+-.. ....+......+.|-+.+.|-.. ++.|..+
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 456888999988888888889999 999999986422100 00123446778888887776543 3334433
Q ss_pred eeCCeeeEEEeec
Q 039336 147 VFKGKPMIIQFGR 159 (167)
Q Consensus 147 ~l~gr~l~v~~a~ 159 (167)
.|....|.+.|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3778888888875
No 158
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=58.06 E-value=24 Score=21.50 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.1
Q ss_pred HHHHHHHhhccCCeeeee
Q 039336 92 DDFFFIFGSLFGSIDAAK 109 (167)
Q Consensus 92 ~~L~~~F~~~~G~i~~~~ 109 (167)
.+|+.+|+. .|.|.-+.
T Consensus 9 ~~iR~~fs~-lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQ-LGEIAVLY 25 (62)
T ss_pred HHHHHHHHh-cCcEEEEE
Confidence 579999999 99996544
No 159
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=57.88 E-value=43 Score=23.64 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHhhccC-Ceeeeeeeeeeee-cCCCCcccEEEEEeCCHHHHHH
Q 039336 88 DVIPDDFFFIFGSLFG-SIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 88 ~~t~~~L~~~F~~~~G-~i~~~~~~~~i~~-~~~g~~kg~aFV~f~~~~~A~~ 138 (167)
..+-.+|++-+..+|+ .=.+.-++..+.. ...|.+.|||.| |.+.+.|..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678899998888777 2222222222222 234677777765 666666554
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.69 E-value=15 Score=30.52 Aligned_cols=69 Identities=12% Similarity=0.237 Sum_probs=45.1
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCC-eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGS-IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~-i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
+.+.|++||+..+..+|..-... |-. +...... .-.........+.|||-|...++...-...++|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~-~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFA-KADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCC-Cccccchheec-cccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45789999999999988876655 322 1111100 000001123467899999999998888888899885
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.50 E-value=2.2 Score=36.06 Aligned_cols=79 Identities=5% Similarity=-0.147 Sum_probs=57.4
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
...|+..+|...+++++.-+|.. ||.|.-+-+. .....|..+..+||+-.. ..|..|+..+.-..+.|..+++.+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~---~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~ 78 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHED-PSIISMEDGS---PYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAV 78 (572)
T ss_pred hhhhHhhcccccccchhhhhccC-CcceeeccCC---ccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhc
Confidence 34678889999999999999998 9998644321 112345667788887654 567778877776778888888888
Q ss_pred ecCC
Q 039336 158 GRNP 161 (167)
Q Consensus 158 a~~~ 161 (167)
|...
T Consensus 79 ~~~s 82 (572)
T KOG4365|consen 79 SPSS 82 (572)
T ss_pred Cchh
Confidence 7643
No 162
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=45.90 E-value=24 Score=30.63 Aligned_cols=41 Identities=37% Similarity=0.594 Sum_probs=35.9
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeecCC
Q 039336 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNP 161 (167)
Q Consensus 121 ~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~~~ 161 (167)
+...|+++.|.++..+.+|+..++|....+..+++..+...
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 45689999999999999999999999999888888877544
No 163
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.87 E-value=3 Score=36.16 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=51.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..|+||++|+++.++-.+|..+... +-......+. ......+...+++|+|.---...-|+.+|||..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~-i~~~lrfals---~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKG-IPGFLRFALS---TINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhcc-Cchheeeecc---CchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 3478999999999999999999877 4333211110 001123456688899988888888888999887755443
No 164
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.76 E-value=41 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=23.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 120 GRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 120 g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
...+||-||+=.+..++..|+..+.+...
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 35899999999999999999988876554
No 165
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=42.10 E-value=90 Score=21.22 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeee-cCCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~-~~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+-.+++..+..++|.=.+..++..+.. ...|+++|||-| |.+.+.|..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 456778999888887776555444333322 134667777765 666666553
No 166
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.78 E-value=46 Score=24.90 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeCCe-eeEEEeec
Q 039336 122 MRGQAFVTFPSVELAHRALNLVNGYVFKGK-PMIIQFGR 159 (167)
Q Consensus 122 ~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr-~l~v~~a~ 159 (167)
+.+..-|-|.++..|..|.-.+++..|.|. .+..-||.
T Consensus 50 sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 50 SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 455566899999999999999999999888 67776665
No 167
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.76 E-value=28 Score=26.63 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=21.0
Q ss_pred HHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCH
Q 039336 92 DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133 (167)
Q Consensus 92 ~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~ 133 (167)
++|...|-+.||.- ..+.-+|.|+||+|.+-
T Consensus 89 edL~~EF~~~~~~~-----------~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKN-----------IIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccc-----------cCCccCCCeeEEehhHH
Confidence 56666776656653 11335799999999874
No 168
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=39.86 E-value=1e+02 Score=19.80 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+-.+|+..+..+|+.=...-++..+... ..+.+.|||.| |.+.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 4567788998888867653232232333322 23556677765 666666554
No 169
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=37.52 E-value=50 Score=20.32 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 124 GQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 124 g~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
.+.+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999888865443
No 170
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=33.26 E-value=1.3e+02 Score=21.02 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=28.9
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeec
Q 039336 121 RMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 121 ~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~ 159 (167)
....+-++.+.+.. ...++..+.|..+.|+++.|..-.
T Consensus 24 ~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 24 PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 34557777777766 445788999999999999998653
No 171
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=31.98 E-value=34 Score=20.13 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=9.0
Q ss_pred CcccEEEEEeCC
Q 039336 121 RMRGQAFVTFPS 132 (167)
Q Consensus 121 ~~kg~aFV~f~~ 132 (167)
+.+|||||...+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 479999999887
No 172
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.09 E-value=50 Score=25.80 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=27.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA 107 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~ 107 (167)
....+||+-|+|..+|++.|..+.+. +|.+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsq-lg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQ-LGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHH-hhhhhh
Confidence 34567999999999999999999998 886543
No 173
>PF14893 PNMA: PNMA
Probab=29.87 E-value=53 Score=26.93 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHh
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFG 99 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~ 99 (167)
...++.+.|.|.+||.++++++|.+.+.
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHH
Confidence 4456667899999999999999887654
No 174
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.07 E-value=42 Score=18.09 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHhh
Q 039336 88 DVIPDDFFFIFGS 100 (167)
Q Consensus 88 ~~t~~~L~~~F~~ 100 (167)
++++++|++.|.+
T Consensus 20 Dtd~~~Lk~vF~~ 32 (36)
T PF11411_consen 20 DTDEDQLKEVFNR 32 (36)
T ss_dssp ---HHHHHHHHHC
T ss_pred cCCHHHHHHHHHH
Confidence 6889999999987
No 175
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=28.01 E-value=30 Score=28.44 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 039336 91 PDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY 146 (167)
Q Consensus 91 ~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~ 146 (167)
.-.+.+++.+ .|.+..-. +..-.+.|.+||..-..+++.++++.|.+.
T Consensus 275 ~p~iF~~i~~-~G~v~~~E-------M~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQK-AGNVEREE-------MYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHH-hcCCCHHH-------HHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3456777777 88764221 223357899999999999999999999864
No 176
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.49 E-value=2.2e+02 Score=24.57 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=43.7
Q ss_pred CCCCCCCCCEEEecCCCCCCC---HHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 039336 70 NYAAGNPASVLYIKNLAKDVI---PDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY 146 (167)
Q Consensus 70 ~~~~~~~~~~lfV~nLp~~~t---~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~ 146 (167)
+..|++++.- +||||+.-.. ...|..+=.+ ||+|-.+++ ...-.|.-.+.+.|..|+ .-+|.
T Consensus 26 ~lPPGP~~lP-iIGnl~~l~~~~~h~~~~~ls~~-yGpi~tl~l------------G~~~~Vviss~~~akE~l-~~~d~ 90 (489)
T KOG0156|consen 26 NLPPGPPPLP-IIGNLHQLGSLPPHRSFRKLSKK-YGPVFTLRL------------GSVPVVVISSYEAAKEVL-VKQDL 90 (489)
T ss_pred CCCcCCCCCC-ccccHHHcCCCchhHHHHHHHHH-hCCeEEEEe------------cCceEEEECCHHHHHHHH-HhCCc
Confidence 3444544443 4889875433 2344444445 999954432 112467778899999998 67788
Q ss_pred eeCCeee
Q 039336 147 VFKGKPM 153 (167)
Q Consensus 147 ~l~gr~l 153 (167)
.+.+|+.
T Consensus 91 ~fa~Rp~ 97 (489)
T KOG0156|consen 91 EFADRPD 97 (489)
T ss_pred cccCCCC
Confidence 8988885
No 177
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=24.76 E-value=1.4e+02 Score=19.29 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=18.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCce
Q 039336 124 GQAFVTFPSVELAHRALNLVNGYV 147 (167)
Q Consensus 124 g~aFV~f~~~~~A~~Al~~l~g~~ 147 (167)
||-||.+........++..+.|..
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v~ 83 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGVR 83 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCcc
Confidence 999999987666677777777744
No 178
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=24.67 E-value=90 Score=28.79 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=25.1
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeec
Q 039336 122 MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 122 ~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~ 159 (167)
..+.|||+|.+...|+.|.+..-+....|.. +|..|-
T Consensus 356 ~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~-~v~iap 392 (827)
T COG5594 356 PTKSGFITFKSQASAQIAAQSQIYSRVLGKL-KVEIAP 392 (827)
T ss_pred ccccEEEEEehhHHHHHHHHhhhhhhhhcce-eeeecC
Confidence 3569999999999999998766444433322 344443
No 179
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=24.49 E-value=1.8e+02 Score=18.90 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCce--eCCeeeEEEe
Q 039336 126 AFVTFPSVELAHRALNLVNGYV--FKGKPMIIQF 157 (167)
Q Consensus 126 aFV~f~~~~~A~~Al~~l~g~~--l~gr~l~v~~ 157 (167)
|.|+|.+..-|++-+ .+.-+. +.+..+.|..
T Consensus 1 AlITF~e~~VA~~i~-~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRIL-KKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHH-hCCEEEEEECCEEEEEEE
Confidence 689999999999887 333333 5666655543
No 180
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.03 E-value=1.4e+02 Score=16.67 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=21.6
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSI 105 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i 105 (167)
..+|+.+.........|.+++.. +|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~-~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEK-LGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHH-cCCE
Confidence 46788887667888999999999 7663
No 181
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=22.93 E-value=1.7e+02 Score=18.97 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=27.4
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~ 132 (167)
.-+||+|++..+.+.-...+... .+.-. + +....+....||+|-++.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~-~~~G~-a-----~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEW-IGDGS-A-----VMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhh-CCCcc-E-----EEEEccCCCCCEEEEEeCC
Confidence 44999999877766544444432 33221 1 1112344488999988743
No 182
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=22.73 E-value=63 Score=17.56 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=8.3
Q ss_pred CcccccCcccc
Q 039336 2 PVIKKKNPVLQ 12 (167)
Q Consensus 2 ~~~~~~~~~~~ 12 (167)
|++||+.|+..
T Consensus 12 p~g~KRRPvKV 22 (39)
T PF00976_consen 12 PVGRKRRPVKV 22 (39)
T ss_pred CCCcccCccee
Confidence 88889888543
No 183
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=22.10 E-value=30 Score=22.30 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=0.0
Q ss_pred CcccccCcc
Q 039336 2 PVIKKKNPV 10 (167)
Q Consensus 2 ~~~~~~~~~ 10 (167)
|+..|.++.
T Consensus 8 PiGRkgk~~ 16 (81)
T PF14812_consen 8 PIGRKGKKS 16 (81)
T ss_dssp ---------
T ss_pred ccCcCCCCC
Confidence 555555554
No 184
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.53 E-value=1.2e+02 Score=19.86 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=26.3
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhc---cCCeeeeeeeeeeeecCCCCcccEEEEEeCC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSL---FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS 132 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~---~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~ 132 (167)
.-+||++++..+.+. |.+...+. -|.+ +....+....||+|-++..
T Consensus 26 ~GVyVg~~s~rVRe~-lW~~v~~~~~~~G~a--------vm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRER-IWDYLAQHCPPKGSL--------VITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHH-HHHHHHHhCCCCccE--------EEEEeCCCCCCcEEEecCC
Confidence 449999988666543 33333331 1333 1223355567899988765
No 185
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.96 E-value=1.9e+02 Score=23.97 Aligned_cols=31 Identities=10% Similarity=0.309 Sum_probs=21.2
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKC 110 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~ 110 (167)
|+|+ .|...++.++|+.+|..+|..-.-+++
T Consensus 248 Ti~~-~l~~~~t~~~i~~~y~~~Y~~epfVrv 278 (349)
T COG0002 248 TIYL-KLKDLVTLEELHAAYEEFYAGEPFVRV 278 (349)
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 3444 344458999999999987766555553
No 186
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=20.83 E-value=2.9e+02 Score=20.76 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.1
Q ss_pred CcccEEEEEeCCHHHHHHHHH
Q 039336 121 RMRGQAFVTFPSVELAHRALN 141 (167)
Q Consensus 121 ~~kg~aFV~f~~~~~A~~Al~ 141 (167)
..+|--||.|...+.|.++++
T Consensus 148 ~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 148 PFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCCCceEEEeecHHHHHhhhh
Confidence 458899999999999998774
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=1.5e+02 Score=23.35 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.5
Q ss_pred CEEEecCCCCCCCHHHHHHHHhh
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGS 100 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~ 100 (167)
....|+|||+.+|..-+..++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhc
Confidence 34679999999999999888865
No 188
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.61 E-value=4.1e+02 Score=22.96 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHhhc---cCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 92 DDFFFIFGSL---FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 92 ~~L~~~F~~~---~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
-+|..+|... +|.|.++.+ +.......+...++.|.+.++|..|+..+-
T Consensus 204 ~dl~~l~~Gs~GtlGIIt~atl----kl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 204 FDLLALFTGSEGMLGVVTEVTV----KLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cchHhhhccCCCccEEEEEEEE----EEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 4566666521 566666553 222333455677889999999999987764
Done!