Query 039336
Match_columns 167
No_of_seqs 231 out of 1986
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3egn_A RNA-binding protein 40; 99.9 3.8E-26 1.3E-30 162.5 10.0 120 42-162 10-131 (143)
2 4fxv_A ELAV-like protein 1; RN 99.9 2.4E-24 8.4E-29 144.5 11.4 81 76-160 18-98 (99)
3 2lxi_A RNA-binding protein 10; 99.9 1.8E-23 6.2E-28 138.1 9.2 84 77-164 1-86 (91)
4 2cpx_A Hypothetical protein FL 99.9 3E-23 1E-27 142.1 10.4 107 55-165 3-109 (115)
5 3s8s_A Histone-lysine N-methyl 99.9 7.2E-23 2.5E-27 139.9 12.2 85 74-162 3-87 (110)
6 4f25_A Polyadenylate-binding p 99.9 1.3E-22 4.5E-27 139.4 11.4 82 77-164 5-86 (115)
7 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.3E-22 7.7E-27 131.0 11.3 84 74-161 3-86 (87)
8 2lkz_A RNA-binding protein 5; 99.9 6.8E-23 2.3E-27 136.6 8.7 79 78-160 10-94 (95)
9 2x1f_A MRNA 3'-END-processing 99.9 4.8E-22 1.6E-26 132.1 11.7 84 76-163 1-84 (96)
10 3md1_A Nuclear and cytoplasmic 99.9 5.4E-22 1.8E-26 128.1 11.5 82 77-162 1-82 (83)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.8E-22 1.7E-26 128.9 11.3 82 74-159 4-85 (85)
12 2dnz_A Probable RNA-binding pr 99.9 7.1E-22 2.4E-26 130.8 12.0 88 74-165 2-89 (95)
13 2cpz_A CUG triplet repeat RNA- 99.9 7.1E-22 2.4E-26 135.4 12.2 90 73-166 21-110 (115)
14 3r27_A HnRNP L, heterogeneous 99.9 4.9E-22 1.7E-26 133.3 10.8 84 69-162 13-98 (100)
15 2jrs_A RNA-binding protein 39; 99.9 6.5E-22 2.2E-26 134.5 11.4 89 71-163 20-108 (108)
16 1whw_A Hypothetical protein ri 99.9 1E-21 3.5E-26 131.0 12.1 87 74-164 5-91 (99)
17 2cq0_A Eukaryotic translation 99.9 8.5E-22 2.9E-26 132.4 11.7 89 74-166 12-100 (103)
18 1x5t_A Splicing factor 3B subu 99.9 8.1E-22 2.8E-26 130.7 11.4 86 75-164 3-89 (96)
19 2la6_A RNA-binding protein FUS 99.9 1.2E-21 4.2E-26 130.8 11.8 85 71-159 7-99 (99)
20 1x5s_A Cold-inducible RNA-bind 99.9 1.1E-21 3.8E-26 131.5 11.5 89 73-165 8-96 (102)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.2E-21 4.2E-26 131.3 11.7 87 74-164 9-95 (102)
22 2dgs_A DAZ-associated protein 99.9 1.7E-21 5.7E-26 130.0 12.2 88 73-165 6-93 (99)
23 2dgo_A Cytotoxic granule-assoc 99.9 2.2E-21 7.7E-26 132.8 13.1 88 73-164 11-98 (115)
24 1oo0_B CG8781-PA, drosophila Y 99.9 1.1E-21 3.7E-26 133.4 11.4 87 74-164 23-109 (110)
25 2cqc_A Arginine/serine-rich sp 99.9 1.1E-21 3.7E-26 129.7 11.1 85 72-160 10-94 (95)
26 1x5u_A Splicing factor 3B subu 99.9 1.6E-21 5.5E-26 131.4 12.1 89 72-164 10-98 (105)
27 2cpf_A RNA binding motif prote 99.9 1.1E-21 3.9E-26 130.6 11.0 90 75-165 3-92 (98)
28 1x4h_A RNA-binding protein 28; 99.9 1.8E-21 6.2E-26 132.3 12.3 88 74-165 12-105 (111)
29 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.9E-21 1E-25 129.7 13.1 88 73-166 11-98 (103)
30 2do4_A Squamous cell carcinoma 99.9 2.1E-21 7.3E-26 129.7 12.3 87 72-163 12-98 (100)
31 2dnh_A Bruno-like 5, RNA bindi 99.9 2.4E-21 8.2E-26 130.5 12.5 88 74-166 12-102 (105)
32 2e5h_A Zinc finger CCHC-type a 99.9 1.5E-21 5.2E-26 128.9 11.0 82 74-159 13-94 (94)
33 2dnm_A SRP46 splicing factor; 99.9 1.3E-21 4.3E-26 131.6 10.7 87 73-163 9-95 (103)
34 3p5t_L Cleavage and polyadenyl 99.9 2.1E-22 7E-27 132.5 6.7 83 78-164 2-86 (90)
35 2d9p_A Polyadenylate-binding p 99.9 2.1E-21 7.3E-26 130.4 11.7 88 72-165 10-97 (103)
36 1p27_B RNA-binding protein 8A; 99.9 1.4E-21 4.8E-26 131.9 10.9 85 74-162 20-104 (106)
37 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.9E-21 6.4E-26 141.5 11.6 87 74-164 69-155 (165)
38 2a3j_A U1 small nuclear ribonu 99.9 1.4E-21 4.7E-26 136.7 10.4 85 72-163 24-112 (127)
39 2dng_A Eukaryotic translation 99.9 3.5E-21 1.2E-25 129.4 11.9 88 72-165 10-97 (103)
40 2dgv_A HnRNP M, heterogeneous 99.9 2.6E-21 8.8E-26 127.3 10.9 85 74-164 5-89 (92)
41 2cph_A RNA binding motif prote 99.9 3.8E-21 1.3E-25 129.9 11.8 89 73-165 11-101 (107)
42 2cpe_A RNA-binding protein EWS 99.9 4.4E-21 1.5E-25 130.9 12.1 87 74-164 12-106 (113)
43 3ns6_A Eukaryotic translation 99.9 5.4E-22 1.9E-26 133.1 7.4 82 76-161 5-93 (100)
44 1wi8_A EIF-4B, eukaryotic tran 99.9 4.1E-21 1.4E-25 129.3 11.6 86 73-164 11-97 (104)
45 2cq3_A RNA-binding protein 9; 99.9 9.8E-21 3.4E-25 127.1 13.4 87 72-164 10-96 (103)
46 1sjq_A Polypyrimidine tract-bi 99.9 2.6E-21 8.9E-26 130.9 10.2 82 73-164 12-95 (105)
47 2dgp_A Bruno-like 4, RNA bindi 99.9 4.1E-21 1.4E-25 129.6 11.2 88 73-164 9-99 (106)
48 2cqp_A RNA-binding protein 12; 99.9 5E-21 1.7E-25 127.4 11.3 85 74-162 12-96 (98)
49 4a8x_A RNA-binding protein wit 99.9 4.1E-21 1.4E-25 125.1 10.6 83 76-162 3-86 (88)
50 2div_A TRNA selenocysteine ass 99.9 3.9E-21 1.3E-25 128.2 10.7 85 74-162 6-95 (99)
51 3ex7_B RNA-binding protein 8A; 99.9 4.1E-21 1.4E-25 133.5 10.9 90 72-165 17-106 (126)
52 1x4d_A Matrin 3; structural ge 99.9 2.5E-21 8.6E-26 130.5 9.3 81 74-164 12-95 (102)
53 3ulh_A THO complex subunit 4; 99.9 9.1E-21 3.1E-25 128.1 12.1 84 72-160 24-107 (107)
54 1u6f_A Tcubp1, RNA-binding pro 99.9 1E-20 3.4E-25 133.6 12.8 88 73-164 38-125 (139)
55 2ywk_A Putative RNA-binding pr 99.9 5.2E-21 1.8E-25 126.5 10.6 82 74-160 13-94 (95)
56 2khc_A Testis-specific RNP-typ 99.9 3.3E-21 1.1E-25 132.5 9.6 83 73-159 36-118 (118)
57 1wex_A Hypothetical protein (r 99.9 6.1E-21 2.1E-25 129.1 10.7 84 72-165 10-95 (104)
58 2dgx_A KIAA0430 protein; RRM d 99.9 1E-20 3.6E-25 125.8 11.7 84 74-164 6-93 (96)
59 2ek1_A RNA-binding protein 12; 99.9 3.8E-21 1.3E-25 127.2 9.4 82 75-160 13-94 (95)
60 2cq1_A PTB-like protein L; RRM 99.8 1.9E-20 6.4E-25 126.0 12.7 83 72-164 10-94 (101)
61 2do0_A HnRNP M, heterogeneous 99.8 2.1E-20 7.3E-25 127.6 13.2 85 72-161 10-94 (114)
62 2kxn_B Transformer-2 protein h 99.8 4.2E-21 1.4E-25 134.5 9.7 89 70-162 39-127 (129)
63 2fy1_A RNA-binding motif prote 99.8 1.2E-20 4.2E-25 129.8 11.7 84 75-163 5-88 (116)
64 2err_A Ataxin-2-binding protei 99.8 8.8E-21 3E-25 129.0 10.8 84 73-162 25-108 (109)
65 1x4a_A Splicing factor, argini 99.8 2.2E-20 7.4E-25 126.8 12.7 86 73-165 18-103 (109)
66 2cqd_A RNA-binding region cont 99.8 1.4E-20 4.7E-25 129.1 11.8 86 73-163 13-98 (116)
67 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-20 3.6E-25 130.7 11.2 84 71-164 25-110 (119)
68 3ucg_A Polyadenylate-binding p 99.8 9E-21 3.1E-25 123.8 10.4 80 77-161 6-85 (89)
69 2dhg_A TRNA selenocysteine ass 99.8 5.6E-21 1.9E-25 128.5 9.6 89 73-165 5-94 (104)
70 2cpi_A CCR4-NOT transcription 99.8 3E-21 1E-25 131.7 8.4 87 75-162 13-102 (111)
71 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-20 4.6E-25 135.6 12.0 87 74-164 67-153 (158)
72 2rs2_A Musashi-1, RNA-binding 99.8 1E-20 3.6E-25 128.7 10.7 89 72-165 20-108 (109)
73 3n9u_C Cleavage and polyadenyl 99.8 9.4E-21 3.2E-25 136.9 11.0 82 76-161 54-137 (156)
74 1x4e_A RNA binding motif, sing 99.8 1.2E-21 4.1E-26 127.2 5.6 83 74-160 2-84 (85)
75 1p1t_A Cleavage stimulation fa 99.8 5.7E-21 1.9E-25 128.4 9.1 84 76-163 7-90 (104)
76 3s7r_A Heterogeneous nuclear r 99.8 1.7E-20 5.8E-25 122.2 11.1 81 73-158 7-87 (87)
77 2m2b_A RNA-binding protein 10; 99.8 3.1E-21 1E-25 135.3 7.5 84 74-162 20-109 (131)
78 2dh8_A DAZ-associated protein 99.8 8.2E-21 2.8E-25 128.0 9.3 87 73-164 12-98 (105)
79 2jvr_A Nucleolar protein 3; RN 99.8 1E-20 3.5E-25 129.4 9.9 82 75-164 26-108 (111)
80 1s79_A Lupus LA protein; RRM, 99.8 5.6E-21 1.9E-25 129.0 8.5 81 74-160 8-88 (103)
81 2dis_A Unnamed protein product 99.8 1.2E-20 4.2E-25 127.8 10.2 87 74-163 5-94 (109)
82 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.9E-21 1E-25 129.4 7.0 83 74-162 16-99 (100)
83 2dgw_A Probable RNA-binding pr 99.8 3.8E-20 1.3E-24 121.6 12.2 83 74-163 7-89 (91)
84 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.6E-20 1.2E-24 133.3 13.0 86 75-164 37-122 (156)
85 2kt5_A RNA and export factor-b 99.8 3.2E-20 1.1E-24 128.8 12.2 86 73-163 31-116 (124)
86 1nu4_A U1A RNA binding domain; 99.8 6.9E-21 2.4E-25 126.4 8.5 83 74-163 5-91 (97)
87 2fc9_A NCL protein; structure 99.8 3.3E-20 1.1E-24 124.2 11.5 84 73-164 11-94 (101)
88 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-20 5.6E-25 122.4 9.5 73 76-158 6-78 (89)
89 2e5j_A Methenyltetrahydrofolat 99.8 2.2E-20 7.4E-25 124.3 10.4 81 74-163 16-96 (97)
90 2cqg_A TDP-43, TAR DNA-binding 99.8 6.7E-20 2.3E-24 123.1 12.7 85 74-164 12-96 (103)
91 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-20 4.6E-25 128.9 9.3 82 74-162 5-86 (115)
92 1fj7_A Nucleolin RBD1, protein 99.8 4.9E-21 1.7E-25 128.2 6.8 85 74-164 14-98 (101)
93 2dnq_A RNA-binding protein 4B; 99.8 3.9E-20 1.3E-24 121.4 11.0 79 74-164 5-83 (90)
94 2nlw_A Eukaryotic translation 99.8 2E-20 7E-25 126.3 9.9 82 75-162 13-101 (105)
95 2fc8_A NCL protein; structure 99.8 4.1E-20 1.4E-24 123.8 11.2 85 73-164 11-95 (102)
96 1x4f_A Matrin 3; structural ge 99.8 8.3E-21 2.8E-25 129.9 7.8 81 74-164 22-105 (112)
97 2dgt_A RNA-binding protein 30; 99.8 7.4E-20 2.5E-24 120.5 12.0 82 73-166 6-87 (92)
98 2mss_A Protein (musashi1); RNA 99.8 1E-20 3.5E-25 119.9 7.4 75 79-158 1-75 (75)
99 1x4b_A Heterogeneous nuclear r 99.8 3E-20 1E-24 127.4 10.2 85 76-165 26-110 (116)
100 1why_A Hypothetical protein ri 99.8 4.9E-20 1.7E-24 122.5 11.0 83 71-163 11-95 (97)
101 2xnq_A Nuclear polyadenylated 99.8 6.4E-20 2.2E-24 122.3 11.5 80 71-162 16-96 (97)
102 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.4E-20 1.5E-24 130.1 11.2 81 74-158 60-140 (140)
103 1x4g_A Nucleolysin TIAR; struc 99.8 5.4E-20 1.8E-24 124.9 11.1 82 75-166 23-104 (109)
104 2jvo_A Nucleolar protein 3; nu 99.8 5.2E-20 1.8E-24 125.1 10.6 83 69-163 23-105 (108)
105 2ytc_A PRE-mRNA-splicing facto 99.8 5.1E-20 1.7E-24 119.3 10.1 76 74-159 9-85 (85)
106 2jwn_A Embryonic polyadenylate 99.8 5.2E-20 1.8E-24 127.5 10.8 81 77-162 36-116 (124)
107 2lea_A Serine/arginine-rich sp 99.8 1.5E-20 5.1E-25 132.7 8.2 87 74-164 44-130 (135)
108 2la4_A Nuclear and cytoplasmic 99.8 3.4E-20 1.2E-24 124.1 9.4 76 76-161 26-101 (101)
109 2cq4_A RNA binding motif prote 99.8 2.7E-20 9.1E-25 127.3 9.0 80 77-161 25-104 (114)
110 1x5o_A RNA binding motif, sing 99.8 8.4E-20 2.9E-24 124.7 11.4 83 75-162 23-113 (114)
111 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-19 4.7E-24 120.8 12.2 79 74-164 12-92 (99)
112 2cpj_A Non-POU domain-containi 99.8 8.2E-20 2.8E-24 121.8 11.0 80 74-163 12-91 (99)
113 2krb_A Eukaryotic translation 99.8 9.6E-21 3.3E-25 122.0 6.1 74 77-156 1-81 (81)
114 1fjc_A Nucleolin RBD2, protein 99.8 3E-20 1E-24 123.2 8.6 82 74-164 13-94 (96)
115 2cqh_A IGF-II mRNA-binding pro 99.8 8.1E-20 2.8E-24 120.5 10.6 80 74-164 5-86 (93)
116 2dnp_A RNA-binding protein 14; 99.8 1.3E-19 4.3E-24 118.9 11.3 78 74-163 6-83 (90)
117 2ki2_A SS-DNA binding protein 99.8 5.6E-21 1.9E-25 125.3 4.7 81 78-163 2-82 (90)
118 2dgu_A Heterogeneous nuclear r 99.8 1.6E-19 5.4E-24 121.3 11.8 80 74-165 8-87 (103)
119 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-20 5.4E-25 119.5 6.4 76 78-158 1-76 (77)
120 1wel_A RNA-binding protein 12; 99.8 3E-20 1E-24 129.0 8.4 83 74-161 22-104 (124)
121 2kvi_A Nuclear polyadenylated 99.8 4.9E-20 1.7E-24 122.4 9.0 80 73-164 6-86 (96)
122 2diu_A KIAA0430 protein; struc 99.8 8.5E-20 2.9E-24 120.2 9.8 77 74-164 5-87 (96)
123 1x4c_A Splicing factor, argini 99.8 1.8E-19 6.3E-24 122.1 11.8 80 74-164 12-96 (108)
124 2cpy_A RNA-binding protein 12; 99.8 7.3E-20 2.5E-24 125.4 9.7 82 74-161 12-94 (114)
125 3q2s_C Cleavage and polyadenyl 99.8 3E-20 1E-24 142.0 8.6 81 76-160 67-149 (229)
126 1whx_A Hypothetical protein ri 99.8 8.7E-20 3E-24 124.5 10.0 77 76-162 9-85 (111)
127 2cq2_A Hypothetical protein LO 99.8 1.1E-19 3.7E-24 124.6 10.1 83 74-166 22-111 (114)
128 1wf1_A RNA-binding protein RAL 99.8 1.5E-19 5.1E-24 122.8 10.7 80 73-164 23-103 (110)
129 1wg5_A Heterogeneous nuclear r 99.8 1.7E-19 5.9E-24 121.6 10.8 83 74-162 12-95 (104)
130 2db1_A Heterogeneous nuclear r 99.8 1.1E-19 3.9E-24 125.2 10.1 81 74-160 14-97 (118)
131 2hvz_A Splicing factor, argini 99.8 7.6E-20 2.6E-24 122.3 8.1 76 78-162 1-76 (101)
132 2hgl_A HNRPF protein, heteroge 99.8 9.9E-20 3.4E-24 128.7 9.0 81 74-160 41-124 (136)
133 4f02_A Polyadenylate-binding p 99.8 3.4E-19 1.2E-23 134.2 11.8 85 73-161 11-95 (213)
134 2i2y_A Fusion protein consists 99.8 1.7E-19 5.8E-24 129.0 9.6 81 73-162 69-149 (150)
135 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-19 7E-24 121.0 9.3 82 74-162 12-93 (102)
136 1b7f_A Protein (SXL-lethal pro 99.8 5E-19 1.7E-23 127.4 11.8 85 76-164 2-86 (168)
137 1iqt_A AUF1, heterogeneous nuc 99.8 6.1E-20 2.1E-24 116.3 5.9 75 79-158 1-75 (75)
138 1wg1_A KIAA1579 protein, homol 99.8 4E-19 1.4E-23 116.2 9.8 76 76-162 4-79 (88)
139 3md3_A Nuclear and cytoplasmic 99.8 8.6E-19 2.9E-23 125.7 12.3 84 73-160 83-166 (166)
140 2lcw_A RNA-binding protein FUS 99.7 3.9E-21 1.3E-25 131.9 0.0 86 75-164 5-98 (116)
141 1x5p_A Negative elongation fac 99.8 1.4E-18 4.6E-23 115.5 12.4 79 74-164 12-90 (97)
142 1fxl_A Paraneoplastic encephal 99.8 7.5E-19 2.6E-23 126.1 11.9 84 76-163 1-84 (167)
143 2lmi_A GRSF-1, G-rich sequence 99.8 1.4E-19 4.7E-24 122.6 6.9 81 74-160 8-91 (107)
144 2dnn_A RNA-binding protein 12; 99.8 3.1E-19 1.1E-23 121.6 8.7 77 77-160 16-92 (109)
145 2f3j_A RNA and export factor b 99.8 5.4E-19 1.8E-23 130.1 10.3 85 73-162 84-168 (177)
146 2e44_A Insulin-like growth fac 99.8 8.5E-19 2.9E-23 116.1 9.8 81 75-163 13-94 (96)
147 3tyt_A Heterogeneous nuclear r 99.8 7.5E-19 2.6E-23 132.1 10.7 78 75-161 2-80 (205)
148 2xs2_A Deleted in azoospermia- 99.8 2.1E-19 7.1E-24 120.4 6.5 80 76-162 8-87 (102)
149 2qfj_A FBP-interacting repress 99.8 1.6E-18 5.5E-23 129.6 11.9 87 75-165 123-209 (216)
150 3pgw_S U1-70K; protein-RNA com 99.8 1.2E-18 4.2E-23 144.3 11.9 85 74-162 99-183 (437)
151 3zzy_A Polypyrimidine tract-bi 99.8 2E-18 6.9E-23 120.8 11.1 76 78-162 29-107 (130)
152 4f02_A Polyadenylate-binding p 99.8 1.2E-18 4E-23 131.3 10.7 80 77-162 103-182 (213)
153 1sjr_A Polypyrimidine tract-bi 99.8 1E-18 3.6E-23 126.6 9.8 77 78-162 47-125 (164)
154 3d2w_A TAR DNA-binding protein 99.8 1.4E-18 4.9E-23 114.0 9.5 78 73-163 7-86 (89)
155 2g4b_A Splicing factor U2AF 65 99.8 2E-18 7E-23 124.8 10.9 82 73-158 90-171 (172)
156 2yh0_A Splicing factor U2AF 65 99.8 3.4E-18 1.2E-22 126.3 12.0 85 75-163 112-196 (198)
157 2dha_A FLJ20171 protein; RRM d 99.8 1E-18 3.6E-23 121.4 8.1 80 75-160 21-104 (123)
158 2e5g_A U6 snRNA-specific termi 99.8 3.9E-18 1.3E-22 112.7 10.0 78 76-163 7-84 (94)
159 2cjk_A Nuclear polyadenylated 99.8 9.3E-19 3.2E-23 126.0 7.4 81 76-161 86-166 (167)
160 2bz2_A Negative elongation fac 99.8 4.4E-18 1.5E-22 117.9 10.3 81 72-164 34-114 (121)
161 3md3_A Nuclear and cytoplasmic 99.8 5.1E-18 1.8E-22 121.6 10.8 81 78-163 1-81 (166)
162 1l3k_A Heterogeneous nuclear r 99.8 5E-18 1.7E-22 125.2 10.9 86 75-165 102-187 (196)
163 2hgm_A HNRPF protein, heteroge 99.8 1.9E-18 6.5E-23 120.5 8.2 82 73-161 38-121 (126)
164 2hzc_A Splicing factor U2AF 65 99.8 3.2E-18 1.1E-22 111.1 8.7 72 75-157 4-86 (87)
165 1l3k_A Heterogeneous nuclear r 99.8 4.8E-18 1.7E-22 125.2 10.8 84 74-162 10-93 (196)
166 2hgn_A Heterogeneous nuclear r 99.7 7.8E-19 2.7E-23 124.5 5.2 81 75-162 44-124 (139)
167 2pe8_A Splicing factor 45; RRM 99.7 1.6E-17 5.5E-22 112.3 11.2 83 74-160 5-93 (105)
168 1fje_B Nucleolin RBD12, protei 99.7 8.1E-18 2.8E-22 122.2 10.4 80 74-162 96-175 (175)
169 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-17 4.6E-22 119.9 11.4 81 74-158 86-168 (168)
170 2e5i_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 116.5 10.2 78 75-162 21-103 (124)
171 2j8a_A Histone-lysine N-methyl 99.7 5E-18 1.7E-22 117.9 8.3 78 78-159 3-94 (136)
172 2dnl_A Cytoplasmic polyadenyla 99.7 5.3E-18 1.8E-22 116.0 8.2 75 75-156 6-83 (114)
173 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-17 6.1E-22 129.2 11.6 84 73-163 5-92 (282)
174 1wf0_A TDP-43, TAR DNA-binding 99.7 4.8E-18 1.7E-22 110.8 7.0 79 75-164 3-81 (88)
175 3beg_B Splicing factor, argini 99.7 7.1E-18 2.4E-22 115.6 7.9 77 75-162 14-95 (115)
176 3nmr_A Cugbp ELAV-like family 99.7 1.6E-17 5.4E-22 120.1 10.1 79 75-158 93-174 (175)
177 1fxl_A Paraneoplastic encephal 99.7 2.2E-17 7.5E-22 118.4 10.7 80 75-158 86-167 (167)
178 2qfj_A FBP-interacting repress 99.7 1.5E-17 5.1E-22 124.3 10.0 83 76-162 27-109 (216)
179 2dit_A HIV TAT specific factor 99.7 7E-17 2.4E-21 110.1 11.9 86 72-165 10-106 (112)
180 1fje_B Nucleolin RBD12, protei 99.7 1E-17 3.4E-22 121.7 7.3 85 73-163 9-93 (175)
181 2voo_A Lupus LA protein; RNA-b 99.7 4.8E-17 1.7E-21 121.1 10.7 83 77-165 109-191 (193)
182 3u1l_A PRE-mRNA-splicing facto 99.7 1.5E-17 5.3E-22 127.5 8.1 78 75-162 132-230 (240)
183 3nmr_A Cugbp ELAV-like family 99.7 4.7E-17 1.6E-21 117.6 9.9 83 76-162 2-89 (175)
184 2cjk_A Nuclear polyadenylated 99.7 2.7E-17 9.2E-22 118.3 8.5 80 76-161 2-81 (167)
185 2adc_A Polypyrimidine tract-bi 99.7 5.8E-17 2E-21 123.2 10.1 80 73-161 30-110 (229)
186 3pgw_A U1-A; protein-RNA compl 99.7 9.9E-17 3.4E-21 124.9 11.5 80 72-160 202-282 (282)
187 2ghp_A U4/U6 snRNA-associated 99.7 5.7E-17 2E-21 126.9 10.1 84 74-162 207-292 (292)
188 3smz_A Protein raver-1, ribonu 99.7 8.8E-17 3E-21 125.3 11.1 84 75-163 182-266 (284)
189 3v4m_A Splicing factor U2AF 65 99.7 1.6E-16 5.4E-21 107.4 9.6 82 74-159 2-95 (105)
190 3smz_A Protein raver-1, ribonu 99.7 2.5E-16 8.7E-21 122.7 12.0 84 75-162 93-176 (284)
191 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.3E-21 118.2 8.8 79 74-161 117-197 (198)
192 1qm9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 118.4 8.1 76 77-161 3-79 (198)
193 2g4b_A Splicing factor U2AF 65 99.7 1.8E-16 6.1E-21 114.5 8.8 85 76-162 3-89 (172)
194 2adc_A Polypyrimidine tract-bi 99.7 2.6E-16 8.8E-21 119.6 10.0 79 74-161 148-228 (229)
195 3sde_A Paraspeckle component 1 99.7 3.4E-16 1.2E-20 121.2 10.7 76 75-160 20-95 (261)
196 2yh0_A Splicing factor U2AF 65 99.7 2E-16 6.9E-21 116.6 8.9 84 76-161 3-88 (198)
197 3tyt_A Heterogeneous nuclear r 99.7 2.6E-16 8.8E-21 118.2 8.9 79 74-158 120-204 (205)
198 3sde_A Paraspeckle component 1 99.6 1.1E-15 3.9E-20 118.2 10.8 83 75-162 94-180 (261)
199 3ue2_A Poly(U)-binding-splicin 99.6 2E-15 6.8E-20 104.0 10.7 84 75-159 18-107 (118)
200 1jmt_A Splicing factor U2AF 35 99.6 1.5E-16 5E-21 107.4 4.5 72 82-158 20-103 (104)
201 2ghp_A U4/U6 snRNA-associated 99.6 1.1E-15 3.8E-20 119.5 10.1 82 76-162 116-198 (292)
202 3tht_A Alkylated DNA repair pr 99.6 8.9E-15 3E-19 117.5 9.9 76 74-159 15-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.2E-14 4E-19 97.4 8.5 68 87-165 27-94 (100)
204 3s6e_A RNA-binding protein 39; 99.5 7.8E-14 2.7E-18 95.5 10.9 78 74-159 4-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 1.4E-12 4.8E-17 85.0 8.1 77 74-163 4-88 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 3.8E-11 1.3E-15 82.6 9.2 77 74-160 15-95 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 6.3E-11 2.1E-15 89.3 8.7 81 78-159 125-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.8E-15 76.4 7.1 72 74-158 12-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.5 8.8E-07 3E-11 59.3 9.6 72 76-157 20-96 (117)
210 1wey_A Calcipressin 1; structu 97.9 4.6E-05 1.6E-09 50.5 7.3 74 78-161 6-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.8 0.00044 1.5E-08 45.7 10.0 73 76-160 7-83 (104)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00039 1.3E-08 45.1 9.5 80 78-161 2-88 (91)
213 1whv_A Poly(A)-specific ribonu 97.6 0.00028 9.6E-09 46.1 7.2 55 77-144 16-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.1 0.003 1E-07 42.8 7.8 69 77-157 24-93 (119)
215 3ctr_A Poly(A)-specific ribonu 97.0 0.00092 3.2E-08 43.8 4.4 54 78-144 7-60 (101)
216 2l08_A Regulator of nonsense t 96.9 0.0057 1.9E-07 39.9 7.5 80 78-160 10-95 (97)
217 2kn4_A Immunoglobulin G-bindin 96.8 0.0012 4.2E-08 46.2 4.5 27 120-146 10-36 (158)
218 3p3d_A Nucleoporin 53; structu 96.8 0.0057 1.9E-07 42.1 7.2 78 78-158 8-96 (132)
219 2i2y_A Fusion protein consists 96.6 0.00078 2.7E-08 47.0 2.2 41 119-160 9-50 (150)
220 3pq1_A Poly(A) RNA polymerase; 96.0 0.0053 1.8E-07 50.9 3.9 53 78-140 54-106 (464)
221 3d45_A Poly(A)-specific ribonu 91.9 0.55 1.9E-05 39.3 7.7 54 78-144 441-494 (507)
222 1xn9_A 30S ribosomal protein S 77.4 5.8 0.0002 25.7 5.3 52 87-139 28-80 (101)
223 1ywx_A 30S ribosomal protein S 74.2 13 0.00044 24.1 6.3 51 87-138 28-79 (102)
224 2v94_A RPS24, 30S ribosomal pr 73.4 7.7 0.00027 25.4 5.1 51 87-138 37-88 (107)
225 2g0c_A ATP-dependent RNA helic 72.4 2.2 7.6E-05 25.6 2.2 73 79-159 2-75 (76)
226 3u5c_Y RP50, 40S ribosomal pro 68.1 16 0.00054 24.9 5.9 51 87-138 33-84 (135)
227 2xzm_P RPS24E; ribosome, trans 60.2 17 0.00057 25.2 4.9 51 87-138 31-82 (149)
228 2g1d_A 30S ribosomal protein S 59.0 6.8 0.00023 25.2 2.6 51 87-138 29-80 (98)
229 4e8u_A Putative uncharacterize 57.3 24 0.00082 25.1 5.4 49 78-133 13-72 (172)
230 2lea_A Serine/arginine-rich sp 43.7 4.9 0.00017 26.9 0.0 30 123-152 4-33 (135)
231 3lpe_A Putative transcription 40.6 25 0.00086 21.9 3.1 27 121-147 48-74 (92)
232 3iz6_U 40S ribosomal protein S 29.8 24 0.00083 24.1 1.7 50 88-138 39-90 (138)
233 2gu3_A YPMB protein; APC1927, 29.8 1.2E+02 0.0041 20.3 5.3 51 82-132 68-127 (136)
234 4eyt_A Telomerase associated p 28.3 1.2E+02 0.0039 19.2 8.1 58 74-143 9-66 (129)
235 2e5p_A Protein PHF1, PHD finge 27.2 39 0.0013 20.0 2.1 13 121-133 35-47 (68)
236 3p8b_B Transcription antitermi 26.0 57 0.002 22.1 3.2 26 122-147 42-67 (152)
237 2m0o_A PHD finger protein 1; t 25.1 45 0.0015 20.3 2.1 13 121-133 52-64 (79)
238 2eqj_A Metal-response element- 24.9 46 0.0016 19.7 2.1 12 121-132 39-50 (66)
239 3h7h_B Transcription elongatio 24.4 57 0.0019 21.0 2.7 27 120-146 48-74 (106)
240 3ts2_A Protein LIN-28 homolog 24.1 18 0.00062 24.9 0.3 10 122-131 20-29 (148)
241 2e5q_A PHD finger protein 19; 23.4 34 0.0012 19.9 1.3 13 121-133 33-45 (63)
242 2w7a_A LINE-1 ORF1P; RNA-bindi 20.2 1.8E+02 0.0061 18.5 4.5 34 123-156 62-98 (100)
No 1
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=162.51 Aligned_cols=120 Identities=39% Similarity=0.733 Sum_probs=107.9
Q ss_pred CCCCCCCHHHHhcCCCChhhhhcCCCCCCCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeee--eeeeeeeecCC
Q 039336 42 DVKPFATPEELEMGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAA--KCGLTVKLMQE 119 (167)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~--~~~~~i~~~~~ 119 (167)
...+.++.+++..++++.+++...+.++++.+..++++|||+|||+.+|+++|+.+|++ ||.|..+ ++++++....+
T Consensus 10 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~~ 88 (143)
T 3egn_A 10 MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMKE 88 (143)
T ss_dssp ---CCCCHHHHHHHBCCHHHHHHCGGGTTCCCCSCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEEE
T ss_pred cccccccHHHHHhccCCHHHHhhcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEeccC
Confidence 36778899999999999999999999999999999999999999999999999999999 9999876 44556666678
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeecCCC
Q 039336 120 GRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPA 162 (167)
Q Consensus 120 g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~~~~ 162 (167)
|+++|||||+|.+.++|.+|+..|||..|.|++|.|+||++..
T Consensus 89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999999999997654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=144.52 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=75.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+++|||+|||+++|+++|+.+|++ ||.|.+++++. +..+|.++|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4688999999999999999999999 99999998653 3678999999999999999999999999999999999999
Q ss_pred EeecC
Q 039336 156 QFGRN 160 (167)
Q Consensus 156 ~~a~~ 160 (167)
+||++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99964
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=138.13 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=74.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccC-CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCeeeE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN-GYVFKGKPMI 154 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G-~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~-g~~l~gr~l~ 154 (167)
+++|||+|||+++|+++|+.+|++ || .|.+++++ ++..+|.++|||||+|.+.++|.+|++.++ +..++|++|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~---~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLM---RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSS---SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEE---ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 468999999999999999999999 99 79888864 336789999999999999999999998874 5679999999
Q ss_pred EEeecCCCCC
Q 039336 155 IQFGRNPAAA 164 (167)
Q Consensus 155 v~~a~~~~~~ 164 (167)
|+||.++...
T Consensus 77 V~~a~~~~~~ 86 (91)
T 2lxi_A 77 MHYSDPKPKI 86 (91)
T ss_dssp EECCCSCCCC
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 4
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3e-23 Score=142.09 Aligned_cols=107 Identities=42% Similarity=0.738 Sum_probs=91.2
Q ss_pred CCCChhhhhcCCCCCCCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHH
Q 039336 55 GKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVE 134 (167)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~ 134 (167)
++++.++....+......+..++++|||+|||+.+++++|+.+|++ ||.|..+.+.+++. +|+++|||||+|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~ 78 (115)
T 2cpx_A 3 SGSSGEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM---TGRMRGQAFITFPNKE 78 (115)
T ss_dssp SCCCCSSSCCCSCCCCCCCCSCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE---CSSSCSEEEEECSSHH
T ss_pred CCCChhhhhhcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC---CCccceEEEEEECCHH
Confidence 3455556666676777777888999999999999999999999999 99997765443322 8899999999999999
Q ss_pred HHHHHHHHhCCceeCCeeeEEEeecCCCCCC
Q 039336 135 LAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165 (167)
Q Consensus 135 ~A~~Al~~l~g~~l~gr~l~v~~a~~~~~~k 165 (167)
+|.+|+..|||..|.|++|+|.||+.+....
T Consensus 79 ~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 79 IAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp HHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 9999999999999999999999998876543
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=7.2e-23 Score=139.87 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=77.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..|.++|||+|||+.+++++|+++|++ ||.|..++++. +..+|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~---d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILL---HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEE---CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346789999999999999999999999 99999998753 36789999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
+|.+|....
T Consensus 79 ~V~~a~~~~ 87 (110)
T 3s8s_A 79 HAQLDIKGQ 87 (110)
T ss_dssp EEEECSTTH
T ss_pred EEEECCCCc
Confidence 999997543
No 6
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=1.3e-22 Score=139.37 Aligned_cols=82 Identities=26% Similarity=0.432 Sum_probs=74.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+++|||+|||+.+++++|+.+|++ ||.|.+|+++.+ .+.++|||||+|.+.++|++||..|+|..|.|+.|+|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d-----~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCD-----ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-----TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeec-----CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 468999999999999999999999 999999987543 45689999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 039336 157 FGRNPAAA 164 (167)
Q Consensus 157 ~a~~~~~~ 164 (167)
+|+++...
T Consensus 79 ~a~~~~~~ 86 (115)
T 4f25_A 79 RFKSRKER 86 (115)
T ss_dssp ESSCCCC-
T ss_pred ECCCcccc
Confidence 99876544
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=131.01 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=73.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 346789999999999999999999999 99999888643 35689999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
+|.+|+++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999876
No 8
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=6.8e-23 Score=136.57 Aligned_cols=79 Identities=22% Similarity=0.377 Sum_probs=70.9
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCC--eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGS--IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY----VFKGK 151 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~--i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~----~l~gr 151 (167)
.||||+|||+.+|+++|+++|++ ||. +..++++ ++..+|++||||||+|.+.++|.+|++.|||. .+.||
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~---~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLI---KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECC---CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEE---ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 68999999999999999999999 996 4566654 34678999999999999999999999999996 48999
Q ss_pred eeEEEeecC
Q 039336 152 PMIIQFGRN 160 (167)
Q Consensus 152 ~l~v~~a~~ 160 (167)
+|.|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999986
No 9
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=4.8e-22 Score=132.06 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=77.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
|+++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMF---DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCB---CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 5789999999999999999999999 99999888643 3567999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
.+|+.+..
T Consensus 77 ~~a~~~~~ 84 (96)
T 2x1f_A 77 GYSSNSDI 84 (96)
T ss_dssp EECSCSSG
T ss_pred EEcCCCCC
Confidence 99988764
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=5.4e-22 Score=128.11 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=75.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
+++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~---~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVM---WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEE---ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEE---EcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 368999999999999999999999 9999988864 335689999999999999999999999999999999999999
Q ss_pred eecCCC
Q 039336 157 FGRNPA 162 (167)
Q Consensus 157 ~a~~~~ 162 (167)
+|+++.
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 998764
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=4.8e-22 Score=128.89 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=75.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+.++ ....+|.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIP---LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECC---EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEE---ECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 346789999999999999999999999 9999988864 335789999999999999999999999999999999999
Q ss_pred EEEeec
Q 039336 154 IIQFGR 159 (167)
Q Consensus 154 ~v~~a~ 159 (167)
+|+||+
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.1e-22 Score=130.75 Aligned_cols=88 Identities=31% Similarity=0.446 Sum_probs=78.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+++++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMK---DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEC---CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 346789999999999999999999999 99999888643 35579999999999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 039336 154 IIQFGRNPAAAK 165 (167)
Q Consensus 154 ~v~~a~~~~~~k 165 (167)
+|.+|+.+....
T Consensus 78 ~V~~a~~~~~~~ 89 (95)
T 2dnz_A 78 RVGHVTERLDGG 89 (95)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEEcccccCCC
Confidence 999998776543
No 13
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=7.1e-22 Score=135.38 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=80.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3446689999999999999999999999 99999888643 3558999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCC
Q 039336 153 MIIQFGRNPAAAKP 166 (167)
Q Consensus 153 l~v~~a~~~~~~k~ 166 (167)
|+|.||+.+...++
T Consensus 97 l~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 97 LKVQLKRSKNDSKS 110 (115)
T ss_dssp CEEECCCCSCCCCC
T ss_pred EEEEEcCCCCcCCC
Confidence 99999998776553
No 14
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=133.27 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce-
Q 039336 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV- 147 (167)
Q Consensus 69 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~- 147 (167)
.......|+++|||+|||+.+|+++|+.+|++ ||.|.+++++ ++||||||+|.+.++|.+|+..|+|..
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~---------~~kg~AFVef~~~~~A~~Av~~ln~~~~ 82 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVM---------PKKRQALVEFEDVLGACNAVNYAADNQI 82 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhcCCCc
Confidence 34555678999999999999999999999999 9999887643 368999999999999999999999875
Q ss_pred -eCCeeeEEEeecCCC
Q 039336 148 -FKGKPMIIQFGRNPA 162 (167)
Q Consensus 148 -l~gr~l~v~~a~~~~ 162 (167)
+.||+|+|+||+++.
T Consensus 83 ~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 83 YIAGHPAFVNYSTSQK 98 (100)
T ss_dssp EETTEEEEEEECSCSC
T ss_pred eeCCcEEEEEeccccc
Confidence 789999999999875
No 15
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=134.53 Aligned_cols=89 Identities=27% Similarity=0.436 Sum_probs=79.8
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 71 YAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
..+..++++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~---~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLM---MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEE---EETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE---EcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 344556789999999999999999999999 9999998864 335689999999999999999999999999999999
Q ss_pred eeeEEEeecCCCC
Q 039336 151 KPMIIQFGRNPAA 163 (167)
Q Consensus 151 r~l~v~~a~~~~~ 163 (167)
++|+|++|+.+.+
T Consensus 96 ~~l~V~~a~~k~d 108 (108)
T 2jrs_A 96 RPMKVGHVTERTD 108 (108)
T ss_dssp SCCEEECSCSSCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999988764
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=131.00 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=78.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..++++.+ ..+|.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPID---SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCC---TTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEec---CCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 356789999999999999999999999 999998876432 4589999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+.+...
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999987654
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.5e-22 Score=132.39 Aligned_cols=89 Identities=25% Similarity=0.415 Sum_probs=79.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+.++ ....+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLA---KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEE---ECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEe---ecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 456789999999999999999999999 9999998864 335689999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCC
Q 039336 154 IIQFGRNPAAAKP 166 (167)
Q Consensus 154 ~v~~a~~~~~~k~ 166 (167)
+|.+|+.+....+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988765543
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.1e-22 Score=130.70 Aligned_cols=86 Identities=22% Similarity=0.387 Sum_probs=77.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeee-eeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAA-KCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~-~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
.++++|||+|||+.+++++|+.+|++ ||.|..+ +++. ...+|.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMR---DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECC---CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEE---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 46789999999999999999999999 9999888 7542 35689999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+++...
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 99999877643
No 19
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=130.78 Aligned_cols=85 Identities=20% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeee--------eeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHH
Q 039336 71 YAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA--------AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNL 142 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~--------~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~ 142 (167)
..+..+.++|||+|||+.+++++|+.+|++ ||.|.. ++++ ....+|+++|||||+|.+.++|.+|+..
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~---~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLY---TDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEE---ECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEE---ecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 344567799999999999999999999999 999988 7754 3356899999999999999999999999
Q ss_pred hCCceeCCeeeEEEeec
Q 039336 143 VNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 143 l~g~~l~gr~l~v~~a~ 159 (167)
|||..|.|+.|+|++|+
T Consensus 83 l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HTTCBSSSSBCEEEECC
T ss_pred hCCCEeCCcEEEEEecC
Confidence 99999999999999985
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=131.49 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVK---DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECC---CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456789999999999999999999999 99999888643 3567899999999999999999999999999999999
Q ss_pred eEEEeecCCCCCC
Q 039336 153 MIIQFGRNPAAAK 165 (167)
Q Consensus 153 l~v~~a~~~~~~k 165 (167)
|+|.+|+.+...+
T Consensus 84 l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 84 IRVDQAGKSSDNR 96 (102)
T ss_dssp CEEEEEECCCCCC
T ss_pred EEEEECCCCCCCC
Confidence 9999999876554
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.2e-21 Score=131.29 Aligned_cols=87 Identities=25% Similarity=0.339 Sum_probs=78.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCC---CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 346789999999999999999999999 99999888643 35678999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999877544
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=130.03 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=78.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+. |+|..|.|+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIY---DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECC---CTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe---CCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 3456789999999999999999999999 99999888643 35678999999999999999999997 9999999999
Q ss_pred eEEEeecCCCCCC
Q 039336 153 MIIQFGRNPAAAK 165 (167)
Q Consensus 153 l~v~~a~~~~~~k 165 (167)
|+|.+|+++....
T Consensus 81 l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 81 VEVKRAEPRDSKS 93 (99)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEECCCCcccC
Confidence 9999998776543
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=2.2e-21 Score=132.78 Aligned_cols=88 Identities=22% Similarity=0.368 Sum_probs=78.8
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVV---KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE---EcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3456789999999999999999999999 9999988864 33468999999999999999999999999999999999
Q ss_pred eEEEeecCCCCC
Q 039336 153 MIIQFGRNPAAA 164 (167)
Q Consensus 153 l~v~~a~~~~~~ 164 (167)
|+|.||+.+...
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999877543
No 24
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=1.1e-21 Score=133.37 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=78.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCB---CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 456789999999999999999999999 99999887642 35689999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
.|.||+++...
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 99999877644
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=129.74 Aligned_cols=85 Identities=26% Similarity=0.311 Sum_probs=76.8
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....++++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34456789999999999999999999999 99999888643 356789999999999999999999999999999999
Q ss_pred eeEEEeecC
Q 039336 152 PMIIQFGRN 160 (167)
Q Consensus 152 ~l~v~~a~~ 160 (167)
+|+|++|++
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999975
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=131.36 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=79.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCB---CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe---cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34456789999999999999999999999 99999888643 245899999999999999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
+|+|.+|+.+...
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999877654
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=130.57 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=77.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.++++|||+|||+.+++++|+.+|++ ||.|..+.++.+-....++.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46789999999999999999999999 99999888653311011558999999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 039336 155 IQFGRNPAAAK 165 (167)
Q Consensus 155 v~~a~~~~~~k 165 (167)
|.+|+.+...+
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99998776543
No 28
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=132.29 Aligned_cols=88 Identities=19% Similarity=0.337 Sum_probs=79.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC------Cce
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN------GYV 147 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~------g~~ 147 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..|+++.+ ..+|.++|||||+|.+.++|.+|+..|| |..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLH---PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBC---SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEec---CCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 456789999999999999999999999 999998886533 5678999999999999999999999999 999
Q ss_pred eCCeeeEEEeecCCCCCC
Q 039336 148 FKGKPMIIQFGRNPAAAK 165 (167)
Q Consensus 148 l~gr~l~v~~a~~~~~~k 165 (167)
|.|++|+|.+|+++....
T Consensus 88 ~~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSSCEEEEECCCCCCCCC
T ss_pred EcCEEEEEEECCCCccCC
Confidence 999999999998876543
No 29
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-21 Score=129.74 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=77.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ .+.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITE-----HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECC-----CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEec-----CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3456789999999999999999999999 999998886533 3447999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCC
Q 039336 153 MIIQFGRNPAAAKP 166 (167)
Q Consensus 153 l~v~~a~~~~~~k~ 166 (167)
|+|.||+.+...+.
T Consensus 85 l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 85 VKVNWATTPSSQKS 98 (103)
T ss_dssp EEEEECCCTTCCCC
T ss_pred EEEEECCCCccccc
Confidence 99999998766554
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=129.74 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=78.3
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....+.++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~----~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVT----NRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEE----CTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEE----CCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34456789999999999999999999999 99999888643 34899999999999999999999999999999999
Q ss_pred eeEEEeecCCCC
Q 039336 152 PMIIQFGRNPAA 163 (167)
Q Consensus 152 ~l~v~~a~~~~~ 163 (167)
.|+|.+|+++..
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 999999988764
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=2.4e-21 Score=130.52 Aligned_cols=88 Identities=25% Similarity=0.420 Sum_probs=79.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--- 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g--- 150 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~----~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLR----GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEE----CSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE----CCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 346789999999999999999999999 99999888543 3478999999999999999999999999999988
Q ss_pred eeeEEEeecCCCCCCC
Q 039336 151 KPMIIQFGRNPAAAKP 166 (167)
Q Consensus 151 r~l~v~~a~~~~~~k~ 166 (167)
++|+|.+|+.+...++
T Consensus 87 ~~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 87 SSLVVKFADTDKESGP 102 (105)
T ss_dssp SCCEEEESCSSCCCSC
T ss_pred ccEEEEECccCcccCC
Confidence 9999999998876654
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=128.89 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=74.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMK---DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECC---CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 346689999999999999999999999 99999888643 35578999999999999999999999999999999999
Q ss_pred EEEeec
Q 039336 154 IIQFGR 159 (167)
Q Consensus 154 ~v~~a~ 159 (167)
+|+||+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999986
No 33
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=131.56 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=77.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPR---EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCB---CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3456789999999999999999999999 99999888643 3567999999999999999999999999999999999
Q ss_pred eEEEeecCCCC
Q 039336 153 MIIQFGRNPAA 163 (167)
Q Consensus 153 l~v~~a~~~~~ 163 (167)
|.|.+|+....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 LRVQVARYGRR 95 (103)
T ss_dssp CEEEECSSCCS
T ss_pred EEEEECCcCCC
Confidence 99999986643
No 34
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=2.1e-22 Score=132.48 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=69.5
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccC--CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFG--SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G--~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+|||+|||+.+++++|+.+|++ || .|.+++++ ....+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~---~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFF---ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEE---ECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEE---ecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 47999999999999999999999 99 89888864 33568999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 039336 156 QFGRNPAAA 164 (167)
Q Consensus 156 ~~a~~~~~~ 164 (167)
.+|.+....
T Consensus 78 ~~~~~~~~~ 86 (90)
T 3p5t_L 78 TPSNKLEHH 86 (90)
T ss_dssp CCC------
T ss_pred EECCCCccc
Confidence 999876543
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=130.43 Aligned_cols=88 Identities=28% Similarity=0.458 Sum_probs=78.7
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....+.++|||+|||+.+++++|+.+|++ ||.|..+.++. . +|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~----~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMM----E-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEE----C-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEc----C-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 33456789999999999999999999999 99999887542 2 889999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCC
Q 039336 152 PMIIQFGRNPAAAK 165 (167)
Q Consensus 152 ~l~v~~a~~~~~~k 165 (167)
.|.|.+|+.+...+
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 84 PLYVALAQRKEERQ 97 (103)
T ss_dssp BCEEEECSSCCCCC
T ss_pred EEEEEEecccccCC
Confidence 99999998876544
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=131.86 Aligned_cols=85 Identities=18% Similarity=0.362 Sum_probs=77.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEE---CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEe---cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 345689999999999999999999999 99999888643 35679999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
+|.+|+++.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998765
No 37
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=1.9e-21 Score=141.49 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=76.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..|.++ ....+|.++|||||+|.+.++|.+||..|||..|.|++|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLN---LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE---ECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEEE---ecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345688999999999999999999999 9999988864 335689999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
.|.||+++...
T Consensus 145 ~V~~a~~~~~~ 155 (165)
T 1rk8_A 145 QVDWCFVKGPK 155 (165)
T ss_dssp EEEESEECC--
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 38
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=136.75 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=75.1
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHH----HHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFF----FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 147 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~----~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~ 147 (167)
....|+++|||+|||+.+++++|+ .+|++ ||.|..|.+ ..+|+++|||||+|.+.++|..|+..|||..
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i------~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVV------DLSDDNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEE------CCCCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEe------ccCCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 345678999999999999999876 69999 999976542 3578999999999999999999999999999
Q ss_pred eCCeeeEEEeecCCCC
Q 039336 148 FKGKPMIIQFGRNPAA 163 (167)
Q Consensus 148 l~gr~l~v~~a~~~~~ 163 (167)
|.|++|+|+||+.++.
T Consensus 97 l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 97 FQGNPLVITFSETPQS 112 (127)
T ss_dssp CTTSCCEEEECCCCCH
T ss_pred eCCCEEEEEEccCcch
Confidence 9999999999987753
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=3.5e-21 Score=129.44 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=77.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
.+..+.++|||+|||+.+++++|+.+|++ || |..++++. ...+|+++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVR---DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEee---cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 34456789999999999999999999999 87 88888643 3567999999999999999999999 9999999999
Q ss_pred eeEEEeecCCCCCC
Q 039336 152 PMIIQFGRNPAAAK 165 (167)
Q Consensus 152 ~l~v~~a~~~~~~k 165 (167)
.|+|.+|+.+...+
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 84 SLRVDIAEGRKQDK 97 (103)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEecCCCCCC
Confidence 99999998776443
No 40
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.6e-21 Score=127.31 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=77.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+++.. .+|.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKM-----ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEE-----SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEc-----cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456789999999999999999999999 99999887542 488999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|++....
T Consensus 79 ~v~~a~~~~~~ 89 (92)
T 2dgv_A 79 DVRIDRNASGP 89 (92)
T ss_dssp CCEECSCCSSC
T ss_pred EEEEcCCCCCC
Confidence 99999987654
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.8e-21 Score=129.85 Aligned_cols=89 Identities=18% Similarity=0.372 Sum_probs=78.8
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeee-cCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCC
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLV-NGYVFKG 150 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~-~~~g~~kg~aFV~f~~~~~A~~Al~~l-~g~~l~g 150 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++ .. ..+|.++|||||+|.+.++|.+|+..| ||..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLP---KKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECC---CCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEe---cCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 3456789999999999999999999999 9999988753 22 347899999999999999999999999 9999999
Q ss_pred eeeEEEeecCCCCCC
Q 039336 151 KPMIIQFGRNPAAAK 165 (167)
Q Consensus 151 r~l~v~~a~~~~~~k 165 (167)
+.|+|.||+.+....
T Consensus 87 ~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 87 RRLVLEWADSEVTVQ 101 (107)
T ss_dssp CBCEEEECCCCCCCC
T ss_pred CEEEEEeCCCCCCCC
Confidence 999999998876543
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.4e-21 Score=130.93 Aligned_cols=87 Identities=21% Similarity=0.352 Sum_probs=77.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCee--------eeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSID--------AAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 145 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~--------~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g 145 (167)
..++++|||+|||+.+++++|+.+|++ ||.|. .++++ ....+|+++|||||+|.+.++|.+|+..|||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIY---LDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECC---BCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEE---EeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 346789999999999999999999999 99998 46654 2356899999999999999999999999999
Q ss_pred ceeCCeeeEEEeecCCCCC
Q 039336 146 YVFKGKPMIIQFGRNPAAA 164 (167)
Q Consensus 146 ~~l~gr~l~v~~a~~~~~~ 164 (167)
..|.|+.|+|.+|+.+...
T Consensus 88 ~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CEETTEECEEECSSCCCCS
T ss_pred CccCCCEEEEEECCCCCCC
Confidence 9999999999999887654
No 43
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=5.4e-22 Score=133.07 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=75.5
Q ss_pred CCCEEEecCCCC------CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 76 PASVLYIKNLAK------DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 76 ~~~~lfV~nLp~------~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
.+++|||+|||+ .+++++|+.+|++ ||.|..++++.+ ..+|+++|||||+|.+.++|.+|+..|||..|.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d---~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPID---EATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEE---TTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 468899999999 9999999999999 999999987543 678999999999999999999999999999999
Q ss_pred C-eeeEEEeecCC
Q 039336 150 G-KPMIIQFGRNP 161 (167)
Q Consensus 150 g-r~l~v~~a~~~ 161 (167)
| ++|+|.+|.++
T Consensus 81 g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 81 LKHRLFLYTMKDV 93 (100)
T ss_dssp SSCBCEEEESHHH
T ss_pred CCeEEEEEECchh
Confidence 9 99999999754
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=129.31 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE-GRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~-g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
+..+.++|||+|||+.+++++|+.+|++ || |..++++.+ ..+ |+++|||||+|.+.++|.+|| .|||..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPRE---PSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBC---SSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecC---CCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3456789999999999999999999999 99 988886432 445 899999999999999999999 9999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
.|.|.+|+.+...
T Consensus 85 ~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 85 RIRVDVADQAQDK 97 (104)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999887654
No 45
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.8e-21 Score=127.15 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=76.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ .+.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFN-----ERGSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECC-----TTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec-----CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34456789999999999999999999999 999998886432 334899999999999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
.|+|.+|+.+...
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 84 KIEVNNATARVMT 96 (103)
T ss_dssp ECEEEECCSSCCC
T ss_pred EEEEEEcccCCCC
Confidence 9999999877544
No 46
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=130.88 Aligned_cols=82 Identities=26% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCC
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVFKG 150 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g--~~l~g 150 (167)
...++++|||+|||+.+++++|+.+|++ ||.|.+++++ +.||||||+|.+.++|..|+..|++ ..|.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~---------~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLML---------KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 3457799999999999999999999999 9999888753 1389999999999999999998874 78999
Q ss_pred eeeEEEeecCCCCC
Q 039336 151 KPMIIQFGRNPAAA 164 (167)
Q Consensus 151 r~l~v~~a~~~~~~ 164 (167)
++|+|+||+.+...
T Consensus 82 r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 82 QPIYIQFSNHKELK 95 (105)
T ss_dssp EECCBCCCSSSSCC
T ss_pred EEEEEEEcCCCCCC
Confidence 99999999877543
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.86 E-value=4.1e-21 Score=129.59 Aligned_cols=88 Identities=19% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---C
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF---K 149 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l---~ 149 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+..|||..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLK---DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCC---CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3456789999999999999999999999 99999888643 356799999999999999999999999999997 8
Q ss_pred CeeeEEEeecCCCCC
Q 039336 150 GKPMIIQFGRNPAAA 164 (167)
Q Consensus 150 gr~l~v~~a~~~~~~ 164 (167)
|++|+|.+|+.+...
T Consensus 85 g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 NRPIQVKPADSESRG 99 (106)
T ss_dssp SSCCEEEECCCCSCC
T ss_pred CceEEEEECCccccc
Confidence 999999999877643
No 48
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=127.43 Aligned_cols=85 Identities=21% Similarity=0.330 Sum_probs=76.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
....++|||+|||+.+++++|+.+|++ ||.|..+.++ ....+|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCL---KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEE---EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEE---EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 345688999999999999999999999 9999877654 346789999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
+|.+|+.+.
T Consensus 88 ~V~~a~~~~ 96 (98)
T 2cqp_A 88 KLVLGSGPS 96 (98)
T ss_dssp EEEESSCSS
T ss_pred EEEEcCCCC
Confidence 999998654
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=4.1e-21 Score=125.14 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGR-MRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~-~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+++|||+|||+.+++++|+.+|++ ||.|..+.++.+ ..++. ++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVE---RMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEE---TTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeC---CCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 4578999999999999999999999 999998886533 33444 899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 039336 155 IQFGRNPA 162 (167)
Q Consensus 155 v~~a~~~~ 162 (167)
|++|.+..
T Consensus 79 v~~a~~~~ 86 (88)
T 4a8x_A 79 ATAVLAPW 86 (88)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99998765
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=128.17 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=77.2
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCee-eeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSID-AAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~-~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
..++++|||+|||+.+++++|+.+|++ ||.|. .++++. ...+|+++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 456789999999999999999999999 99998 888643 3568999999999999999999999999999999999
Q ss_pred ----eEEEeecCCC
Q 039336 153 ----MIIQFGRNPA 162 (167)
Q Consensus 153 ----l~v~~a~~~~ 162 (167)
|+|+||+...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999998764
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=4.1e-21 Score=133.47 Aligned_cols=90 Identities=18% Similarity=0.353 Sum_probs=79.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....++++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCB---CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 33456789999999999999999999999 99999887643 255899999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCC
Q 039336 152 PMIIQFGRNPAAAK 165 (167)
Q Consensus 152 ~l~v~~a~~~~~~k 165 (167)
.|.|+||+.+...+
T Consensus 93 ~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 93 PISVDWCFVRGPPK 106 (126)
T ss_dssp BCEEEESEESSSCC
T ss_pred EEEEEEecCCCCCC
Confidence 99999998765443
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=130.49 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=71.4
Q ss_pred CCCCCEEEecCCCC-CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCC
Q 039336 74 GNPASVLYIKNLAK-DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY--VFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~-~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~--~l~g 150 (167)
..|+++|||+|||+ .+++++|+.+|++ ||.|.++.++ +.+|||||+|.+.++|..|+..|||. .|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLIL---------NKINEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEEC---------SSSSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 45789999999999 9999999999999 9999888753 24699999999999999999999864 5999
Q ss_pred eeeEEEeecCCCCC
Q 039336 151 KPMIIQFGRNPAAA 164 (167)
Q Consensus 151 r~l~v~~a~~~~~~ 164 (167)
|+|+|+||+.....
T Consensus 82 r~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 82 KPVRVHLSQKYKRI 95 (102)
T ss_dssp EECEEEEECCCTTS
T ss_pred cEEEEEECCCCCCC
Confidence 99999999965543
No 53
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=9.1e-21 Score=128.06 Aligned_cols=84 Identities=30% Similarity=0.381 Sum_probs=75.9
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
.+..++++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~----~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHY----DRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEE----CTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 34456799999999999999999999999 99998888543 34899999999999999999999999999999999
Q ss_pred eeEEEeecC
Q 039336 152 PMIIQFGRN 160 (167)
Q Consensus 152 ~l~v~~a~~ 160 (167)
.|+|++|.+
T Consensus 99 ~l~V~~a~s 107 (107)
T 3ulh_A 99 PMNIQLVTS 107 (107)
T ss_dssp ECEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999864
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=133.60 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=79.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIV---CDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEE---EETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE---EcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3456789999999999999999999999 9999998864 33567899999999999999999999999999999999
Q ss_pred eEEEeecCCCCC
Q 039336 153 MIIQFGRNPAAA 164 (167)
Q Consensus 153 l~v~~a~~~~~~ 164 (167)
|+|.+|+.+...
T Consensus 114 l~v~~a~~~~~~ 125 (139)
T 1u6f_A 114 LKVALAASGHQR 125 (139)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999877543
No 55
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=126.54 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=74.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~----~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICK----DREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEE----CTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEE----CCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345689999999999999999999999 99999887543 3458999999999999999999999999999999999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
+|.+|++
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999875
No 56
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=3.3e-21 Score=132.49 Aligned_cols=83 Identities=24% Similarity=0.355 Sum_probs=74.7
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECC---CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3456789999999999999999999999 99999888643 3567999999999999999999999999999999999
Q ss_pred eEEEeec
Q 039336 153 MIIQFGR 159 (167)
Q Consensus 153 l~v~~a~ 159 (167)
|+|+||+
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999985
No 57
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.1e-21 Score=129.08 Aligned_cols=84 Identities=15% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeC
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY--VFK 149 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~--~l~ 149 (167)
....|+++|||+|||+.+++++|+.+|++ ||.|..+.++ +.||||||+|.+.++|.+|+..|+|. .|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMM---------PFKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE---------CCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 34567899999999999999999999999 9999887642 14899999999999999999988765 489
Q ss_pred CeeeEEEeecCCCCCC
Q 039336 150 GKPMIIQFGRNPAAAK 165 (167)
Q Consensus 150 gr~l~v~~a~~~~~~k 165 (167)
|++|+|+||+.+...+
T Consensus 80 Gr~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 80 GQQAFFNYSTSKRITR 95 (104)
T ss_dssp SSBCEEEECSSSSCCC
T ss_pred CEEEEEEEccCccccC
Confidence 9999999998776544
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=125.75 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHH----HHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFF----FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~----~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
...+++|||+|||+.+++++|+ .+|++ ||.|..++++.+ .. + +|||||+|.+.++|.+|+..|||..|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~---~~-~--rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPH---TD-Y--QLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSC---CS-T--TCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeC---CC-C--CeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999 99999 999998886432 22 2 899999999999999999999999999
Q ss_pred CeeeEEEeecCCCCC
Q 039336 150 GKPMIIQFGRNPAAA 164 (167)
Q Consensus 150 gr~l~v~~a~~~~~~ 164 (167)
|++|+|++|+.....
T Consensus 79 gr~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 79 SKKILVSLATGASGP 93 (96)
T ss_dssp TEEEEEEECCCSSCC
T ss_pred CeEEEEEEcCCCCCC
Confidence 999999999877643
No 59
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=3.8e-21 Score=127.21 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=73.3
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
++.++|||+|||+.+++++|+.+|.+ ||.|..+.++ ....+|+++|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~---~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCL---KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEE---EECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEE---EeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 45689999999999999999999999 9999877754 3467899999999999999999999999999999999999
Q ss_pred EEeecC
Q 039336 155 IQFGRN 160 (167)
Q Consensus 155 v~~a~~ 160 (167)
|.+|.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 999864
No 60
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=126.03 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeC
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV--NGYVFK 149 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l--~g~~l~ 149 (167)
....|+++|||+|||+.+++++|+.+|++ ||.|..+.++ +.||||||+|.+.++|..|+..| ++..|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILML---------KGKNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE---------CCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 34567899999999999999999999999 9999887643 13899999999999999999987 467899
Q ss_pred CeeeEEEeecCCCCC
Q 039336 150 GKPMIIQFGRNPAAA 164 (167)
Q Consensus 150 gr~l~v~~a~~~~~~ 164 (167)
|++|+|+||+.+...
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 NQPIYIQYSNHKELK 94 (101)
T ss_dssp TEECEEEECSCSSCC
T ss_pred CcEEEEEEcCcccCc
Confidence 999999999977643
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=127.59 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=76.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....++++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~----~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILE----DKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEE----CTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEE----CCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 44566789999999999999999999999 99999887543 34689999999999999999999999999999999
Q ss_pred eeEEEeecCC
Q 039336 152 PMIIQFGRNP 161 (167)
Q Consensus 152 ~l~v~~a~~~ 161 (167)
.|+|.+|+..
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999999744
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=4.2e-21 Score=134.53 Aligned_cols=89 Identities=27% Similarity=0.346 Sum_probs=79.6
Q ss_pred CCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 70 NYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 70 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
......++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEEC---CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3344567799999999999999999999999 99999888643 3567899999999999999999999999999999
Q ss_pred CeeeEEEeecCCC
Q 039336 150 GKPMIIQFGRNPA 162 (167)
Q Consensus 150 gr~l~v~~a~~~~ 162 (167)
|++|.|.||+.+.
T Consensus 115 g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 115 GRRIRVDFSITKR 127 (129)
T ss_dssp SSCCEESCCSSSS
T ss_pred CEEEEEEEecCCC
Confidence 9999999998765
No 63
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=129.78 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=76.1
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..+.++. ..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~----~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIK----DRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEEC----STTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEE----CCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 45689999999999999999999999 99998887543 33899999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 039336 155 IQFGRNPAA 163 (167)
Q Consensus 155 v~~a~~~~~ 163 (167)
|.+|+.+..
T Consensus 80 V~~a~~~~~ 88 (116)
T 2fy1_A 80 VEQAKKPSF 88 (116)
T ss_dssp EEECCCSSC
T ss_pred EEECCCCCC
Confidence 999986653
No 64
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.8e-21 Score=129.04 Aligned_cols=84 Identities=24% Similarity=0.323 Sum_probs=75.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ .+.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-----~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFN-----ERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCB-----TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEEC-----CCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3456789999999999999999999999 999998876432 3458999999999999999999999999999999
Q ss_pred eEEEeecCCC
Q 039336 153 MIIQFGRNPA 162 (167)
Q Consensus 153 l~v~~a~~~~ 162 (167)
|+|.+|+++.
T Consensus 99 l~V~~a~~~~ 108 (109)
T 2err_A 99 IEVNNATARV 108 (109)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=126.76 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=76.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..+.+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDL------KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEE------CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEE------EECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3456789999999999999999999999 999987764 335678999999999999999999999999999999
Q ss_pred eEEEeecCCCCCC
Q 039336 153 MIIQFGRNPAAAK 165 (167)
Q Consensus 153 l~v~~a~~~~~~k 165 (167)
|+|+||+.+....
T Consensus 91 l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 91 LRVEFPRSGRGTG 103 (109)
T ss_dssp CEEECCCCCCCCC
T ss_pred EEEEEcccCCCCC
Confidence 9999998776443
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=129.11 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+++++|||||+|.+.++|.+||..+++ .|.|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVIT---DRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESC---CSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 3456789999999999999999999999 99999888643 356799999999999999999999999998 899999
Q ss_pred eEEEeecCCCC
Q 039336 153 MIIQFGRNPAA 163 (167)
Q Consensus 153 l~v~~a~~~~~ 163 (167)
|+|.+|+....
T Consensus 88 l~V~~a~~~~~ 98 (116)
T 2cqd_A 88 ANVNLAYLGAK 98 (116)
T ss_dssp CEEEESTTTCC
T ss_pred EEEEEcccCCC
Confidence 99999976543
No 67
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=130.70 Aligned_cols=84 Identities=26% Similarity=0.406 Sum_probs=73.4
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--cee
Q 039336 71 YAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVF 148 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g--~~l 148 (167)
.....|+++|||+|||+.+++++|+.+|++ ||.|..++++ ..||||||+|.+.++|.+|+..|++ ..|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~---------~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l 94 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLML---------KGKNQAFIEMNTEEAANTMVNYYTSVTPVL 94 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEE---------GGGTEEEEECSCHHHHHHHHHHHHHHCCCB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 344567899999999999999999999999 9999888753 1389999999999999999999985 679
Q ss_pred CCeeeEEEeecCCCCC
Q 039336 149 KGKPMIIQFGRNPAAA 164 (167)
Q Consensus 149 ~gr~l~v~~a~~~~~~ 164 (167)
.|++|+|+||+.+...
T Consensus 95 ~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 95 RGQPIYIQFSNHKELK 110 (119)
T ss_dssp TTBCCEEEECSSSSCC
T ss_pred CCeEEEEEEccCCCCC
Confidence 9999999999877543
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=9e-21 Score=123.85 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=73.5
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILC---DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEE---SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 478999999999999999999999 99999888643 2568999999999999999999999 999999999999999
Q ss_pred eecCC
Q 039336 157 FGRNP 161 (167)
Q Consensus 157 ~a~~~ 161 (167)
+|++.
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99864
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=128.50 Aligned_cols=89 Identities=25% Similarity=0.354 Sum_probs=78.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCe
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV-FKGK 151 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~-l~gr 151 (167)
...++++|||+|||+.+++++|+.+|++.||.|..++++.+ . +|.++|||||+|.+.++|.+|+..|+|.. |.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~---~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD---Q-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEEC---T-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEEC---C-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 34567899999999999999999999865999998886432 3 89999999999999999999999999999 9999
Q ss_pred eeEEEeecCCCCCC
Q 039336 152 PMIIQFGRNPAAAK 165 (167)
Q Consensus 152 ~l~v~~a~~~~~~k 165 (167)
+|+|.+|+.+...+
T Consensus 81 ~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 81 PVRLSVAIPKASRV 94 (104)
T ss_dssp CCCCCBCCCCCSCC
T ss_pred eEEEEEccCCCcCC
Confidence 99999998765543
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=131.69 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=74.8
Q ss_pred CCCCEEEecCCCCCCCHHHHH---HHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 75 NPASVLYIKNLAKDVIPDDFF---FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~---~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
.+.++|||+|||+.+++++|+ .+|++ ||.|..+.++.+-....+++++|||||+|.+.++|++|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 346789999999999999999 99999 99999988643311112346779999999999999999999999999999
Q ss_pred eeEEEeecCCC
Q 039336 152 PMIIQFGRNPA 162 (167)
Q Consensus 152 ~l~v~~a~~~~ 162 (167)
+|+|++|+++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998875
No 71
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=1.3e-20 Score=135.59 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ ..+|+++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~v~~~~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPRD---RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEECCCC---SSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeec---CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345689999999999999999999999 999999886533 4689999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+.+...
T Consensus 143 ~v~~a~~~~~~ 153 (158)
T 2kn4_A 143 RVQMARYGRPP 153 (158)
T ss_dssp EEEEECCSSCC
T ss_pred EEEECCCCCCC
Confidence 99999876544
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=1e-20 Score=128.71 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=74.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..+ |..|.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~---~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECC---CTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEE---CCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 33456789999999999999999999999 99999988643 3567999999999999999999999776 5889999
Q ss_pred eeEEEeecCCCCCC
Q 039336 152 PMIIQFGRNPAAAK 165 (167)
Q Consensus 152 ~l~v~~a~~~~~~k 165 (167)
.|.|.+|..+...+
T Consensus 95 ~l~V~~a~~~~~~~ 108 (109)
T 2rs2_A 95 TIDPKVAFPRRAQP 108 (109)
T ss_dssp EEEEEECCCCCCCC
T ss_pred EEEEEEccCCCCCC
Confidence 99999999876544
No 73
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=9.4e-21 Score=136.90 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=74.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccC--CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFG--SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G--~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++|||+|||+++++++|+.+|++ || .|..++++ .+..+|+++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~---~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFA---ENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEE---ECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEE---ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 4579999999999999999999999 99 89888864 336789999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
.|.+|..+
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99999653
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-21 Score=127.19 Aligned_cols=83 Identities=20% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 356789999999999999999999999 99999888643 35679999999999999999999999999999999999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
+++++++
T Consensus 78 ~~~~~~s 84 (85)
T 1x4e_A 78 KQSGPSS 84 (85)
T ss_dssp CSSCCCC
T ss_pred eecCCCC
Confidence 9887654
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.7e-21 Score=128.37 Aligned_cols=84 Identities=17% Similarity=0.318 Sum_probs=76.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEE---ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3478999999999999999999999 99999888643 3568999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
.+|+++..
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99987653
No 76
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.7e-20 Score=122.21 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=72.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+ .++|..|.|+.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~ 81 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKM---DPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRV 81 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEE---CTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEee---cCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEE
Confidence 3456789999999999999999999999 99999988643 3567999999999999999999999 56888999999
Q ss_pred eEEEee
Q 039336 153 MIIQFG 158 (167)
Q Consensus 153 l~v~~a 158 (167)
|.|.+|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 77
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=135.33 Aligned_cols=84 Identities=17% Similarity=0.322 Sum_probs=75.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeee--eeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc----e
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA--AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY----V 147 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~--~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~----~ 147 (167)
..++++|||+|||+.+|+++|+.+|++ ||.|.. |+++. +..+|+++|||||+|.+. +|.+|+..|||. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~---d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIK---DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCB---CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEE---cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 456789999999999999999999999 999976 77643 356899999999999999 999999999999 9
Q ss_pred eCCeeeEEEeecCCC
Q 039336 148 FKGKPMIIQFGRNPA 162 (167)
Q Consensus 148 l~gr~l~v~~a~~~~ 162 (167)
|.||.|+|.+|++..
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998653
No 78
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=8.2e-21 Score=127.97 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+||.. +|..|.|+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEE---CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEee---CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 3456789999999999999999999999 99999988643 356899999999999999999999988 999999999
Q ss_pred eEEEeecCCCCC
Q 039336 153 MIIQFGRNPAAA 164 (167)
Q Consensus 153 l~v~~a~~~~~~ 164 (167)
|.|.+|+++...
T Consensus 87 l~V~~a~~~~~~ 98 (105)
T 2dh8_A 87 IDPKPCTPRGMQ 98 (105)
T ss_dssp EBCCCSCCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999877644
No 79
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=1e-20 Score=129.41 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccC-CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G-~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
...++|||+|||+.+++++|+++|++ || .|..+.+. .+.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~-------~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVN-------TRDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECS-------SCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEE-------cCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45689999999999999999999999 99 88776642 23589999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+.....
T Consensus 98 ~V~~a~~~p~~ 108 (111)
T 2jvr_A 98 TVERDDNPPPI 108 (111)
T ss_dssp EEEESCC----
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-21 Score=129.00 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+++|+++|+.+|++ ||.|.+++++.+ . .|.++|||||+|.+.++|.+|+. ++|..|.|+.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d---~-~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRT---L-HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECC---C-TTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEEC---C-CCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 345678999999999999999999999 999999886533 3 38999999999999999999997 99999999999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998753
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=127.82 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=76.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCC-eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGS-IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN--GYVFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~-i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~--g~~l~g 150 (167)
..++++|||+|||+.+++++|+.+|++ ||. |..+.++ .....+|.++|||||+|.+.++|..|+..|+ +..+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~--~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVY--ASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECC--SSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEE--ccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 346789999999999999999999999 998 9888753 1335678999999999999999999999996 589999
Q ss_pred eeeEEEeecCCCC
Q 039336 151 KPMIIQFGRNPAA 163 (167)
Q Consensus 151 r~l~v~~a~~~~~ 163 (167)
+.|+|.||+++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999987765
No 82
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=129.35 Aligned_cols=83 Identities=17% Similarity=0.291 Sum_probs=72.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
..+.++|||+|||+.+++++|+.+|++ || |..++++.+ . .+|+++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~---~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPRE---PSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCC---TTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEec---CCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 445689999999999999999999999 99 988886422 3 47999999999999999999999 99999999999
Q ss_pred eEEEeecCCC
Q 039336 153 MIIQFGRNPA 162 (167)
Q Consensus 153 l~v~~a~~~~ 162 (167)
|+|.+|+.+.
T Consensus 90 l~V~~a~~~~ 99 (100)
T 2j76_E 90 IRVDVADQAQ 99 (100)
T ss_dssp CCCEECCCSC
T ss_pred EEEEeccCCC
Confidence 9999998765
No 83
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=121.55 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=74.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
....++|||+|||+.+++++|+.+|++ | .|..++++. ..+|+++|||||+|.+.++|.+|+. |||..|.|+.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~----~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVR----NAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEE----CTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEE----CCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 345689999999999999999999999 8 888877542 3689999999999999999999998 99999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
.|.+|..+..
T Consensus 80 ~v~~a~~~~~ 89 (91)
T 2dgw_A 80 EVFREKSGPS 89 (91)
T ss_dssp EEEEESSCCC
T ss_pred EEEECCcCCC
Confidence 9999987754
No 84
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=3.6e-20 Score=133.29 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=77.9
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..|.++. ...++.++|||||+|.+.++|.+||..|||..|.|+.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGL---DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46789999999999999999999999 99999988643 356789999999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 039336 155 IQFGRNPAAA 164 (167)
Q Consensus 155 v~~a~~~~~~ 164 (167)
|+||++....
T Consensus 113 V~~a~~~~~~ 122 (156)
T 1h2v_Z 113 TDWDAGFKEG 122 (156)
T ss_dssp EEEESCCCTT
T ss_pred EEECCCCCCc
Confidence 9999876543
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=3.2e-20 Score=128.76 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=77.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...++++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~----~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDY----DRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEEC----CSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEE----CCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3456789999999999999999999999 99999888543 238899999999999999999999999999999999
Q ss_pred eEEEeecCCCC
Q 039336 153 MIIQFGRNPAA 163 (167)
Q Consensus 153 l~v~~a~~~~~ 163 (167)
|+|++|.....
T Consensus 106 l~V~~a~~~~~ 116 (124)
T 2kt5_A 106 MDIQLVASQID 116 (124)
T ss_dssp EEEEEECCTTC
T ss_pred EEEEEeCCCCC
Confidence 99999987654
No 86
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=6.9e-21 Score=126.40 Aligned_cols=83 Identities=36% Similarity=0.596 Sum_probs=74.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHH----HHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFF----FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~----~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
..++++|||+|||+.+++++|+ .+|++ ||.|..+.++ .+|.++|||||+|.+.++|..|+..|||..+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVS------RSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECC------HHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEE------cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4578999999999999999999 99999 9999877642 36788999999999999999999999999999
Q ss_pred CeeeEEEeecCCCC
Q 039336 150 GKPMIIQFGRNPAA 163 (167)
Q Consensus 150 gr~l~v~~a~~~~~ 163 (167)
|++|+|+||+++..
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 99999999988754
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-20 Score=124.16 Aligned_cols=84 Identities=23% Similarity=0.316 Sum_probs=73.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|. + ....+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~---~----~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEK-ATFIK---V----PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSS-CSEEE---C----CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEEE---E----EECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 3456799999999999999999999999 99882 2 22367899999999999999999999999999999999
Q ss_pred eEEEeecCCCCC
Q 039336 153 MIIQFGRNPAAA 164 (167)
Q Consensus 153 l~v~~a~~~~~~ 164 (167)
|+|.+|+.+...
T Consensus 83 l~v~~a~~~~~~ 94 (101)
T 2fc9_A 83 IRLELQGPRGSP 94 (101)
T ss_dssp EEEEECSSCCCC
T ss_pred EEEEEcCCCCCC
Confidence 999999877543
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.6e-20 Score=122.40 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+.-|||+||++.+|+++|+++|.+ ||+|.++++. .+||||||+|.+.++|.+|+..|||..|.||+|+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3567999999999999999999999 9999888753 27999999999999999999999999999999999
Q ss_pred Eee
Q 039336 156 QFG 158 (167)
Q Consensus 156 ~~a 158 (167)
.+|
T Consensus 76 ~~A 78 (89)
T 2wbr_A 76 ESP 78 (89)
T ss_dssp ECC
T ss_pred EEC
Confidence 999
No 89
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=124.31 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=72.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
....++|||+|||+.+++++|+.+|++ ||.|. +.++ +++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLT-------WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEE-------EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEE-------cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 345689999999999999999999999 99985 4432 34789999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
+|.+|+.+..
T Consensus 87 ~V~~a~~~~~ 96 (97)
T 2e5j_A 87 RVALARQQRD 96 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999988653
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.7e-20 Score=123.06 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=75.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+||. ++..|.|+.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEe---cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 456788999999999999999999999 99999988643 35679999999999999999999997 5789999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
.|.+|.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999887654
No 91
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=1.3e-20 Score=128.89 Aligned_cols=82 Identities=22% Similarity=0.512 Sum_probs=74.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..+.++ .++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVG------NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEE------CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEe------eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456789999999999999999999999 9999887753 356779999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|.||..+.
T Consensus 78 ~v~~a~~~~ 86 (115)
T 3lqv_A 78 VVLYYNANR 86 (115)
T ss_dssp EEEECCHHH
T ss_pred EEEEecCCh
Confidence 999997543
No 92
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-21 Score=128.18 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|.. .++ ....+|.++|||||+|.+.++|.+|+. |||..|.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~---~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAV---VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCC---CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEE---ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 346789999999999999999999999 999876 332 334578999999999999999999998 99999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+++...
T Consensus 88 ~V~~a~~~~~~ 98 (101)
T 1fj7_A 88 KLEKPKGRDGT 98 (101)
T ss_dssp EEECCSCCCCS
T ss_pred EEEEcCCCCCC
Confidence 99999887654
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=121.36 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=72.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++ +|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 456789999999999999999999999 9999887642 7999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+.+...
T Consensus 73 ~v~~a~~~~~~ 83 (90)
T 2dnq_A 73 NVEASKNKSKA 83 (90)
T ss_dssp EEECSSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999877654
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=126.34 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=74.1
Q ss_pred CCCCEEEecCCCCCC------CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 75 NPASVLYIKNLAKDV------IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~------t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
..+++|||+|||+.+ ++++|+.+|++ ||.|..+.++ ..+|+++|||||+|.+.++|.+|+..|||..|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 446899999999999 78999999999 9999988753 46899999999999999999999999999999
Q ss_pred CCe-eeEEEeecCCC
Q 039336 149 KGK-PMIIQFGRNPA 162 (167)
Q Consensus 149 ~gr-~l~v~~a~~~~ 162 (167)
.|+ +|+|.+|....
T Consensus 87 ~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 87 DKQHTFRVNLFTDFD 101 (105)
T ss_dssp STTCEEEEECSCCCC
T ss_pred CCCceEEEEEcchHh
Confidence 998 99999997543
No 95
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=123.78 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=74.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|+. |+.+ .+ +....++.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~---~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDG-SVRA---RI---VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTT-CSEE---EE---EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcC-CeEE---EE---EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3456789999999999999999999998 8644 32 233568999999999999999999999999999999999
Q ss_pred eEEEeecCCCCC
Q 039336 153 MIIQFGRNPAAA 164 (167)
Q Consensus 153 l~v~~a~~~~~~ 164 (167)
|+|.+|+++...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 999999987654
No 96
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.3e-21 Score=129.90 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCC
Q 039336 74 GNPASVLYIKNLAKD-VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG--YVFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~-~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g--~~l~g 150 (167)
..|+++|||+|||++ +++++|+.+|++ ||.|..++++ ++||||||+|.+.++|..|+..|++ ..|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 557899999999998 999999999999 9999887742 4689999999999999999998864 56999
Q ss_pred eeeEEEeecCCCCC
Q 039336 151 KPMIIQFGRNPAAA 164 (167)
Q Consensus 151 r~l~v~~a~~~~~~ 164 (167)
|+|+|+||+.+...
T Consensus 92 r~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 92 RCVKVDLSEKYKKL 105 (112)
T ss_dssp SCCEEEEECSCSSS
T ss_pred EEEEEEECcccccc
Confidence 99999999877654
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=120.51 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..+.++ ++||||+|.+.++|.+|+..|||..|.|+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIV-----------KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEEC-----------SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3456789999999999999999999999 9999887642 559999999999999999999999999999
Q ss_pred eEEEeecCCCCCCC
Q 039336 153 MIIQFGRNPAAAKP 166 (167)
Q Consensus 153 l~v~~a~~~~~~k~ 166 (167)
|+|++|+.+....+
T Consensus 74 l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 74 MHVQLSTSRLRTAS 87 (92)
T ss_dssp EEEEESSCCCSCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99999988765543
No 98
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=1e-20 Score=119.94 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=68.6
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
+|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|++|+. ++|..+.|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCB---CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999 99999887643 24579999999999999999999996 9999999999999986
No 99
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=127.42 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+||.. +|..|.|+.|+|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMR---DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEEC---CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEE---CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3488999999999999999999999 99999888643 356799999999999999999999977 999999999999
Q ss_pred EeecCCCCCC
Q 039336 156 QFGRNPAAAK 165 (167)
Q Consensus 156 ~~a~~~~~~k 165 (167)
.+|+++....
T Consensus 101 ~~a~~~~~~~ 110 (116)
T 1x4b_A 101 KRAVAREESG 110 (116)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCccCC
Confidence 9998876543
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=122.49 Aligned_cols=83 Identities=19% Similarity=0.383 Sum_probs=73.5
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-
Q 039336 71 YAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK- 149 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~- 149 (167)
+....+.++|||+|||+.+++++|+.+|++ ||.|..+.+. + .+|||||+|.+.++|.+|+..|||..|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~-------~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHV-------K--GDSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEEC-------S--SSCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe-------C--CCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 344567789999999999999999999999 9999887642 1 2899999999999999999999999999
Q ss_pred -CeeeEEEeecCCCC
Q 039336 150 -GKPMIIQFGRNPAA 163 (167)
Q Consensus 150 -gr~l~v~~a~~~~~ 163 (167)
|+.|+|+||+++..
T Consensus 81 ~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 81 PDRRLRVDFAKSGPS 95 (97)
T ss_dssp SSCBCEEEECCCCCC
T ss_pred CCcEEEEEECCCCCC
Confidence 99999999998754
No 101
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=6.4e-20 Score=122.30 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=71.1
Q ss_pred CCCCCCCCEEEecCCCC-CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 71 YAAGNPASVLYIKNLAK-DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 71 ~~~~~~~~~lfV~nLp~-~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
....+++++|||+|||+ .+++++|+.+|++ ||.|..+++ ++|||||+|.+.++|.+|+..|||..+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI-----------KNAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34456789999999998 9999999999999 999987763 3899999999999999999999999999
Q ss_pred CeeeEEEeecCCC
Q 039336 150 GKPMIIQFGRNPA 162 (167)
Q Consensus 150 gr~l~v~~a~~~~ 162 (167)
|+.|+|++|+++.
T Consensus 84 g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 84 GKKLILEVSSSNA 96 (97)
T ss_dssp TEECEEEECCCCC
T ss_pred CEEEEEEecCCCC
Confidence 9999999998764
No 102
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=130.07 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=73.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCC---CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEee---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 446789999999999999999999999 99999887643 35679999999999999999999999999999999999
Q ss_pred EEEee
Q 039336 154 IIQFG 158 (167)
Q Consensus 154 ~v~~a 158 (167)
+|.+|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99986
No 103
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.4e-20 Score=124.87 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..++++. .+|||||+|.+.++|.+|+..|+|..|.|++|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 35689999999999999999999999 99998877531 289999999999999999999999999999999
Q ss_pred EEeecCCCCCCC
Q 039336 155 IQFGRNPAAAKP 166 (167)
Q Consensus 155 v~~a~~~~~~k~ 166 (167)
|.||+.+....+
T Consensus 93 v~~a~~~~~~~~ 104 (109)
T 1x4g_A 93 CYWGKESPDMTS 104 (109)
T ss_dssp EECCCCCCSSCC
T ss_pred EEecCCCCCCCC
Confidence 999998765543
No 104
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=5.2e-20 Score=125.13 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=71.5
Q ss_pred CCCCCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 69 KNYAAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 69 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
.......++++|||+|||+.+++++|+.+|++ ||.|..+.+. +|||||+|.+.++|.+|+..|||..|
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34444567799999999999999999999999 9999887642 89999999999999999999999999
Q ss_pred CCeeeEEEeecCCCC
Q 039336 149 KGKPMIIQFGRNPAA 163 (167)
Q Consensus 149 ~gr~l~v~~a~~~~~ 163 (167)
.|+.|.|.||+.+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 91 ANQPLEVVYSKLPAK 105 (108)
T ss_dssp TTEECEEESCSCCC-
T ss_pred CCeEEEEEEecCCCC
Confidence 999999999987754
No 105
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=119.35 Aligned_cols=76 Identities=22% Similarity=0.398 Sum_probs=69.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV-NGYVFKGKP 152 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l-~g~~l~gr~ 152 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++ +++|||||+|.+.++|.+|+..| +|..+.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~---------~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVV---------QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEE---------CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 345689999999999999999999999 9999887753 25899999999999999999989 999999999
Q ss_pred eEEEeec
Q 039336 153 MIIQFGR 159 (167)
Q Consensus 153 l~v~~a~ 159 (167)
|+|+||+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999986
No 106
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=5.2e-20 Score=127.50 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=74.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILC---DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEE---ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 478999999999999999999999 99999888643 3568999999999999999999999 899999999999999
Q ss_pred eecCCC
Q 039336 157 FGRNPA 162 (167)
Q Consensus 157 ~a~~~~ 162 (167)
+++...
T Consensus 111 ~a~~~~ 116 (124)
T 2jwn_A 111 PKRTNM 116 (124)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998654
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=1.5e-20 Score=132.66 Aligned_cols=87 Identities=23% Similarity=0.326 Sum_probs=77.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|+++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGG-GSCCSEEECCC---CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345688999999999999999999999 99998887643 24578999999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.+|+.....
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 108
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.4e-20 Score=124.09 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=70.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+++|||+|||+.+++++|+.+|++ ||.|..+++. +++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4689999999999999999999999 9999887743 57999999999999999999999999999999999
Q ss_pred EeecCC
Q 039336 156 QFGRNP 161 (167)
Q Consensus 156 ~~a~~~ 161 (167)
.||+++
T Consensus 96 ~~a~~~ 101 (101)
T 2la4_A 96 GWGKER 101 (101)
T ss_dssp CBCCCC
T ss_pred EeccCC
Confidence 999864
No 109
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.7e-20 Score=127.29 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|++ ||.|..++++.+ ..+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISD---RNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCS---CCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEec---CCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 478999999999999999999999 999998886533 557899999999999999999999 999999999999999
Q ss_pred eecCC
Q 039336 157 FGRNP 161 (167)
Q Consensus 157 ~a~~~ 161 (167)
+|+.+
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 99754
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.4e-20 Score=124.71 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=74.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee------
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF------ 148 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l------ 148 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ .+|.++|||||+|.+.++|.+|+..|||..|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~----~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRD----SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEEC----SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEEC----CCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 45689999999999999999999999 999999886432 3899999999999999999999999999999
Q ss_pred --CCeeeEEEeecCCC
Q 039336 149 --KGKPMIIQFGRNPA 162 (167)
Q Consensus 149 --~gr~l~v~~a~~~~ 162 (167)
.|++|.|.||.+++
T Consensus 98 ~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPSS 113 (114)
T ss_dssp CCCSSCBEEEECCCSC
T ss_pred cCCCCceeEEccCCCC
Confidence 68889999998654
No 111
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=120.75 Aligned_cols=79 Identities=25% Similarity=0.422 Sum_probs=71.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhcc--CCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLF--GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~--G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
..+.++|||+|||+.+++++|+.+|++ | |.|..+++ .+|||||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKK-----------IRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEE-----------CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEE-----------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 456789999999999999999999999 9 88876652 378999999999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
.|+|.+|+++...
T Consensus 80 ~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 PIEVTLAKPVDKD 92 (99)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999877644
No 112
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.2e-20 Score=121.84 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=72.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..+++. +++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~---------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIH---------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEE---------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 456789999999999999999999999 9999887643 358999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
+|.+|+.+..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 113
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=9.6e-21 Score=122.02 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=67.2
Q ss_pred CCEEEecCCCCCC------CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 77 ASVLYIKNLAKDV------IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 77 ~~~lfV~nLp~~~------t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
+++|||+|||+.+ ++++|+.+|++ ||.|..++++ ..+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence 3689999999999 77999999999 9999888743 4689999999999999999999999999999999
Q ss_pred e-eeEEE
Q 039336 151 K-PMIIQ 156 (167)
Q Consensus 151 r-~l~v~ 156 (167)
+ +|+|+
T Consensus 75 ~~~l~V~ 81 (81)
T 2krb_A 75 QHTFRVN 81 (81)
T ss_dssp SSCCCCC
T ss_pred ceeEEeC
Confidence 9 88763
No 114
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=123.17 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=73.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..+ ..+|.++|||||+|.+.++|.+|+..|+|..|.|++|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~--------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE--------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe--------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346789999999999999999999999 9988533 3478899999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
.|.+|+.+...
T Consensus 84 ~v~~a~~~~~~ 94 (96)
T 1fjc_A 84 SLYYTGEKGGT 94 (96)
T ss_dssp EEEECSSSCCC
T ss_pred EEEEcCCCCCC
Confidence 99999887654
No 115
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=120.45 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=70.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCC-eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCe
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGS-IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG-YVFKGK 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~-i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g-~~l~gr 151 (167)
..+.++|||+|||+.+++++|+.+|++ ||. |..+.+ .++|||||+|.+.++|.+|+..||| ..|.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~----------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVL----------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEE----------EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEE----------cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 346688999999999999999999999 999 554432 2689999999999999999999999 999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
.|+|.+|+++...
T Consensus 74 ~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 74 IMEVDYSVSKKLR 86 (93)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCcccc
Confidence 9999999877543
No 116
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=118.91 Aligned_cols=78 Identities=17% Similarity=0.258 Sum_probs=70.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..++++ ++||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVV-----------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEC-----------SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456788999999999999999999999 9999887642 5699999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
+|.+|+.+..
T Consensus 74 ~v~~a~~~~~ 83 (90)
T 2dnp_A 74 NVELSTKGQK 83 (90)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 117
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=5.6e-21 Score=125.26 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=70.5
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIY---DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECC---CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEE---cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 57999999999999999999999 99999888643 3557999999999999999 9999999999999999999999
Q ss_pred ecCCCC
Q 039336 158 GRNPAA 163 (167)
Q Consensus 158 a~~~~~ 163 (167)
|.....
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 987643
No 118
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.6e-19 Score=121.35 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=71.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..+.++ +|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 346789999999999999999999999 9999877632 6799999999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 039336 154 IIQFGRNPAAAK 165 (167)
Q Consensus 154 ~v~~a~~~~~~k 165 (167)
.|.+|+.+...+
T Consensus 76 ~v~~a~~~~~~~ 87 (103)
T 2dgu_A 76 EIVFAKPPDQKR 87 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEcCCCcccc
Confidence 999998776543
No 119
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-20 Score=119.47 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=69.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|.+|+..++ ..+.|++|.|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEEC---CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEec---CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 47999999999999999999999 99999887643 34578999999999999999999999999 999999999998
Q ss_pred e
Q 039336 158 G 158 (167)
Q Consensus 158 a 158 (167)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 7
No 120
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=129.01 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=74.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..+.+ +....+|+++|||||+|.+.++|.+||. |||..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~---~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIY---IAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCE---EEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEE---EEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 445689999999999999999999999 999987544 3446789999999999999999999998 99999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
.|.+|..+
T Consensus 97 ~V~~a~~~ 104 (124)
T 1wel_A 97 QVHPITKK 104 (124)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998653
No 121
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.9e-20 Score=122.41 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=70.5
Q ss_pred CCCCCCEEEecCCCC-CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 73 AGNPASVLYIKNLAK-DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~-~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
...++++|||+|||+ .+++++|+.+|++ ||.|..+.+ ++|||||+|.+.++|..|+..|||..+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI-----------KNAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEE-----------ETTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 345788999999998 9999999999999 999987763 389999999999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
+|+|++|+++...
T Consensus 74 ~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 74 KLILEVSSSNARP 86 (96)
T ss_dssp TBCEEEEECCCC-
T ss_pred EEEEEEcCcCCCC
Confidence 9999999876543
No 122
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.5e-20 Score=120.22 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred CCCCCE-EEecCCCCCCCHHH----HHHHHhhcc-CCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 039336 74 GNPASV-LYIKNLAKDVIPDD----FFFIFGSLF-GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV 147 (167)
Q Consensus 74 ~~~~~~-lfV~nLp~~~t~~~----L~~~F~~~~-G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~ 147 (167)
.+|+.| |||+|||+.+++++ |+.+|++ | |.|.. | +| |+|||.|.+.++|.+|++.|||..
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~------V----tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLS------I----TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEE------C----CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEE------E----ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 346666 99999999999988 5689999 9 49843 3 33 999999999999999999999999
Q ss_pred eCCeeeEEEeecCCCCC
Q 039336 148 FKGKPMIIQFGRNPAAA 164 (167)
Q Consensus 148 l~gr~l~v~~a~~~~~~ 164 (167)
|.||+|+|+||+.+++.
T Consensus 71 l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 71 VFGNRIIVSFTPKNREL 87 (96)
T ss_dssp SSSSCCEEESSCCSCCC
T ss_pred cCCceEEEEecCCCcce
Confidence 99999999999988653
No 123
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=122.13 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=71.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--- 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g--- 150 (167)
....++|||+|||+.+++++|+.+|++ ||.|..+.++. . |||||+|.+.++|++||..|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~------~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYR------D----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEET------T----TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEec------C----CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 455789999999999999999999999 99998887531 1 999999999999999999999999999
Q ss_pred --eeeEEEeecCCCCC
Q 039336 151 --KPMIIQFGRNPAAA 164 (167)
Q Consensus 151 --r~l~v~~a~~~~~~ 164 (167)
+.|.|.+|+.+...
T Consensus 81 ~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSPS 96 (108)
T ss_dssp CEEEEEEEESSCCSCC
T ss_pred cceEEEEEeCCCCCCC
Confidence 99999999876543
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=125.36 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCe-eeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI-DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i-~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
..+.++|||+|||+.+++++|+.+|++ ||.| ..++++.+ .+|+++|||||+|.+.++|.+||.. ||..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d----~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVD----NNGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCC----TTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEEC----CCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 446789999999999999999999999 9999 77875433 3899999999999999999999966 999999999
Q ss_pred eEEEeecCC
Q 039336 153 MIIQFGRNP 161 (167)
Q Consensus 153 l~v~~a~~~ 161 (167)
|.|.+|..+
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999999654
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=3e-20 Score=142.04 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=73.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccC--CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFG--SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G--~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++|||+|||+.+|+++|+.+|++ || .|..|+++. +..+|+++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~---d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEE---CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 4578999999999999999999999 99 899888653 36789999999999999999999999999999999999
Q ss_pred EEEeecC
Q 039336 154 IIQFGRN 160 (167)
Q Consensus 154 ~v~~a~~ 160 (167)
+|.+|+.
T Consensus 143 ~V~~a~~ 149 (229)
T 3q2s_C 143 VVTPVNK 149 (229)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 9999864
No 126
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=124.54 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=70.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+++|||+|||+.+++++|+.+|++ ||.|..+.++ .++|||||+|.+.++|.+|+..|||..|.|++|.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3578999999999999999999999 9999877643 37899999999999999999999999999999999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
+||+...
T Consensus 79 ~~a~~~~ 85 (111)
T 1whx_A 79 EWAPIGV 85 (111)
T ss_dssp EEEETTT
T ss_pred EECCCCc
Confidence 9998653
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=124.59 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCCEEEe--cCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---
Q 039336 74 GNPASVLYI--KNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF--- 148 (167)
Q Consensus 74 ~~~~~~lfV--~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l--- 148 (167)
..|+++||| +||++.+++++|+++|++ ||.|..+.++ + .||||||+|.+.++|.+|+..|||..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~-------~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMP-------P--NKPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECC-------T--TCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEe-------C--CCCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 456789999 779999999999999999 9999877532 2 489999999999999999999999998
Q ss_pred --CCeeeEEEeecCCCCCCC
Q 039336 149 --KGKPMIIQFGRNPAAAKP 166 (167)
Q Consensus 149 --~gr~l~v~~a~~~~~~k~ 166 (167)
.|++|.|.||+.....+|
T Consensus 92 lg~g~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 92 LGQKITLYLNFVEKVQWSGP 111 (114)
T ss_dssp TSCEEECEEEEESCCCCSSC
T ss_pred cCCCcEEEEEecccCcccCC
Confidence 799999999998776665
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=1.5e-19 Score=122.84 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=71.7
Q ss_pred CCCCCCEEEecCCCCC-CCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 73 AGNPASVLYIKNLAKD-VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~-~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
+..++++|||+|||+. +++++|+.+|++ ||.|..+.+ ++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3445689999999999 999999999999 999987763 589999999999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
.|+|.+|+.....
T Consensus 91 ~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 91 TLDINMAGEPKPD 103 (110)
T ss_dssp ECCEEESCCCCSC
T ss_pred EEEEEECCCCCCC
Confidence 9999999865443
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=121.56 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=73.2
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeee-eeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA-AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~-~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|.. ++++ ...+|+++|||||+|.+.++|.+||.. +|..|+||.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~----~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLP----VDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECC----BCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEE----ECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 445789999999999999999999999 999976 5543 236899999999999999999999976 999999999
Q ss_pred eEEEeecCCC
Q 039336 153 MIIQFGRNPA 162 (167)
Q Consensus 153 l~v~~a~~~~ 162 (167)
|.|.++..+.
T Consensus 86 i~v~~~~~~~ 95 (104)
T 1wg5_A 86 IEIFKSSRAE 95 (104)
T ss_dssp CEEEEECTTT
T ss_pred EEEEECCHHH
Confidence 9999987654
No 130
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=125.23 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=72.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCC---eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGS---IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~---i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
....++|||+|||+.+|+++|+.+|++ ||. |..++++. ...|+++|||||+|.+.++|.+||. +||..|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~----~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIY----TREGRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEE----CSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEE----CCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 345689999999999999999999999 999 77877543 3459999999999999999999997 99999999
Q ss_pred eeeEEEeecC
Q 039336 151 KPMIIQFGRN 160 (167)
Q Consensus 151 r~l~v~~a~~ 160 (167)
|.|.|.+|..
T Consensus 88 r~i~V~~a~~ 97 (118)
T 2db1_A 88 RYIEVFKSHR 97 (118)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 9999999853
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=122.35 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=69.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
++|||+|||+.+++++|+.+|++ ||.|..+.++.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 57999999999999999999999 999988775421 799999999999999999999999999999999999
Q ss_pred ecCCC
Q 039336 158 GRNPA 162 (167)
Q Consensus 158 a~~~~ 162 (167)
|+++.
T Consensus 72 a~~~~ 76 (101)
T 2hvz_A 72 STGMP 76 (101)
T ss_dssp SSSCC
T ss_pred ccCCC
Confidence 98765
No 132
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=9.9e-20 Score=128.71 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCC---eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGS---IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~---i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
....++|||+|||+++|+++|+.+|++ ||. |..++++. ...|+++|||||+|.+.++|.+||. +||..|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~----d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIY----TREGRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEE----CSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEE----CCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 345689999999999999999999999 999 77887543 2349999999999999999999998 99999999
Q ss_pred eeeEEEeecC
Q 039336 151 KPMIIQFGRN 160 (167)
Q Consensus 151 r~l~v~~a~~ 160 (167)
|.|.|.+|..
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 9999999854
No 133
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=3.4e-19 Score=134.22 Aligned_cols=85 Identities=31% Similarity=0.418 Sum_probs=75.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
+..|.++|||+|||+++|+++|+.+|++ ||.|.+|+++ ++..+|+++|||||+|.+.++|.+|+..++|..+.|+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~---~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEe---cccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 3457789999999999999999999999 9999999865 33678999999999999999999999999999999999
Q ss_pred eEEEeecCC
Q 039336 153 MIIQFGRNP 161 (167)
Q Consensus 153 l~v~~a~~~ 161 (167)
|++.++...
T Consensus 87 i~~~~~~~~ 95 (213)
T 4f02_A 87 VRIMWSQRD 95 (213)
T ss_dssp CEEEECCCC
T ss_pred ccccccccc
Confidence 999998754
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=1.7e-19 Score=128.98 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ ++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGY-YGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHH-HSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3456789999999999999999999999 999988875421 6999999999999999999999999999999
Q ss_pred eEEEeecCCC
Q 039336 153 MIIQFGRNPA 162 (167)
Q Consensus 153 l~v~~a~~~~ 162 (167)
|+|+||+++.
T Consensus 140 l~v~~a~~~~ 149 (150)
T 2i2y_A 140 VRVELSNGEK 149 (150)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 135
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=121.00 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=71.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+|+++|+++|++ ||.+ .++++. ..+|+++|||||+|.+.++|.+|| .+|+..|.||.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~----d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 84 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEI----GPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYV 84 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEE----SSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEE----CCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEE
Confidence 345689999999999999999999999 9954 776543 348999999999999999999999 689999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|.++....
T Consensus 85 ~V~~~~~~~ 93 (102)
T 1wez_A 85 ELFLNSTAG 93 (102)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=5e-19 Score=127.43 Aligned_cols=85 Identities=22% Similarity=0.441 Sum_probs=77.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
++++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|+|..+.|++|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIM---RDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECC---EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEE---EeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 5789999999999999999999999 9999988864 33568999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 039336 156 QFGRNPAAA 164 (167)
Q Consensus 156 ~~a~~~~~~ 164 (167)
.++.+....
T Consensus 78 ~~~~~~~~~ 86 (168)
T 1b7f_A 78 SYARPGGES 86 (168)
T ss_dssp EECCCCSST
T ss_pred EecCCCccc
Confidence 999876543
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=6.1e-20 Score=116.25 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=67.9
Q ss_pred EEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEee
Q 039336 79 VLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFG 158 (167)
Q Consensus 79 ~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a 158 (167)
+|||+|||+.+++++|+.+|++ ||.|..+.++.+ ..+|.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMD---NKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCS---CCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEec---CCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999 999988876432 5678999999999999999999996 5999999999999886
No 138
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=4e-19 Score=116.16 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=69.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
.+++|||+|||+.+++++|+.+|++ | .|..+++. +++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 72 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV 72 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 4678999999999999999999999 8 88777631 68999999999999999999999999999999999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
++|..+.
T Consensus 73 ~~a~~~~ 79 (88)
T 1wg1_A 73 QLQPTDA 79 (88)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 9997653
No 139
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.6e-19 Score=125.68 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=76.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...++++|||+|||+.+++++|+.+|++ ||.|..+.++. ...+|.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 4456789999999999999999999999 99999888643 3568999999999999999999999999999999999
Q ss_pred eEEEeecC
Q 039336 153 MIIQFGRN 160 (167)
Q Consensus 153 l~v~~a~~ 160 (167)
|+|.||+.
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999863
No 140
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.9e-21 Score=131.91 Aligned_cols=86 Identities=21% Similarity=0.397 Sum_probs=76.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeee--------eeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDA--------AKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGY 146 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~--------~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~ 146 (167)
.++++|||+|||+.+++++|+.+|++ ||.|.. ++++ ....+|.++|||||+|.+.++|.+|+..|||.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLY---TDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 45688999999999999999999999 999987 6653 22467899999999999999999999999999
Q ss_pred eeCCeeeEEEeecCCCCC
Q 039336 147 VFKGKPMIIQFGRNPAAA 164 (167)
Q Consensus 147 ~l~gr~l~v~~a~~~~~~ 164 (167)
.|.|++|+|.+|+.+...
T Consensus 81 ~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRADF 98 (116)
Confidence 999999999999877543
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-18 Score=115.52 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..++++|||+|| .+++++|+.+|++ ||.|..+.+ +.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i---------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSM---------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEE---------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEe---------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 456789999996 8999999999999 999987763 2689999999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q 039336 154 IIQFGRNPAAA 164 (167)
Q Consensus 154 ~v~~a~~~~~~ 164 (167)
+|.||+++...
T Consensus 80 ~v~~a~~~~~~ 90 (97)
T 1x5p_A 80 KVNIARKQPML 90 (97)
T ss_dssp EEECCSSCCCC
T ss_pred EEEECCCCCCC
Confidence 99999877544
No 142
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=7.5e-19 Score=126.10 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=76.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
++++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|+|..+.|++|.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~---~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLV---RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEE---eCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 3578999999999999999999999 9999988864 33558999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
.++.+...
T Consensus 77 ~~~~~~~~ 84 (167)
T 1fxl_A 77 SYARPSSA 84 (167)
T ss_dssp EECCCCCG
T ss_pred EecCCCcc
Confidence 99986643
No 143
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=122.64 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=72.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCC---eeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGS---IDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~---i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
....++|||+|||+.+|+++|+.+|+. ||. |..++++. ...|+++|||||+|.+.++|.+||. ++|..|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~----~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLL----NRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCC----CTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEE----CCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 345789999999999999999999999 998 77777542 2349999999999999999999997 99999999
Q ss_pred eeeEEEeecC
Q 039336 151 KPMIIQFGRN 160 (167)
Q Consensus 151 r~l~v~~a~~ 160 (167)
|.|.|.+|..
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 9999999864
No 144
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=121.58 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+++|++ | .|..++++. ...|+++|||||+|.+.++|.+|| .+||..|+||.|.|.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~----d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLK----DHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECC----CTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEE----CCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 478999999999999999999999 9 787777543 345999999999999999999999 899999999999998
Q ss_pred eecC
Q 039336 157 FGRN 160 (167)
Q Consensus 157 ~a~~ 160 (167)
.|..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8753
No 145
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=5.4e-19 Score=130.09 Aligned_cols=85 Identities=27% Similarity=0.366 Sum_probs=76.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...++++|||+|||+.+++++|+.+|++ ||.|..|.++.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d----~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYD----RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCC----TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC----CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3456789999999999999999999999 999988885432 38999999999999999999999999999999999
Q ss_pred eEEEeecCCC
Q 039336 153 MIIQFGRNPA 162 (167)
Q Consensus 153 l~v~~a~~~~ 162 (167)
|.|.||....
T Consensus 159 l~V~~a~~~~ 168 (177)
T 2f3j_A 159 MDIQLVASQI 168 (177)
T ss_dssp CEEEEESSGG
T ss_pred EEEEEecCCC
Confidence 9999997654
No 146
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=116.09 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=70.3
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeee-eeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK-CGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~-~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+++|||+|||+.+++++|+.+|++ ||.|..++ ++.+ +..|.|||+|.+.++|.+|+..|||..|.|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~-------~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTD-------SETAVVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCS-------SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecC-------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 44688999999999999999999999 99998874 4321 234449999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
+|.+|..+..
T Consensus 85 ~V~~a~~~~~ 94 (96)
T 2e44_A 85 KVAYIPDEMA 94 (96)
T ss_dssp EEEECCCCCS
T ss_pred EEEEcCcccc
Confidence 9999998743
No 147
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=7.5e-19 Score=132.07 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=70.9
Q ss_pred CCCCEEEecCCC-CCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLA-KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp-~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
.++++|||+||| +.+++++|+.+|++ ||.|.+++++. ..+|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 468999999999 89999999999999 99998887531 258999999999999999999999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
+|.+|+.+
T Consensus 73 ~v~~s~~~ 80 (205)
T 3tyt_A 73 NVCVSKQP 80 (205)
T ss_dssp EEEECSCS
T ss_pred EEEEccCC
Confidence 99999754
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=2.1e-19 Score=120.43 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=72.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
++++|||+|||+.+++++|+.+|++ ||.|..++++.+ . +|.++|||||+|.+.++|.+|+. +|..|+|+.|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITD---R-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEEC---T-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEEC---C-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 4588999999999999999999999 999998886433 3 89999999999999999999996 999999999999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9997654
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=1.6e-18 Score=129.65 Aligned_cols=87 Identities=18% Similarity=0.376 Sum_probs=78.1
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|+++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~---~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLA---RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEE---ecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 34579999999999999999999999 9999998864 3356899999999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 039336 155 IQFGRNPAAAK 165 (167)
Q Consensus 155 v~~a~~~~~~k 165 (167)
|.||+++....
T Consensus 199 V~~a~~~~~~~ 209 (216)
T 2qfj_A 199 VGKAVTPPMPL 209 (216)
T ss_dssp EEECSSCSSTT
T ss_pred EEEecCCCCCC
Confidence 99999875443
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=1.2e-18 Score=144.35 Aligned_cols=85 Identities=19% Similarity=0.378 Sum_probs=77.2
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+|+++|..+|++ ||.|..|.|+.+ ..+|.++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d---~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYS---KRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeecc---CCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 345689999999999999999999999 999999886533 5689999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|.||+++.
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999998653
No 151
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=2e-18 Score=120.81 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=67.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eeeE
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ-AFVTFPSVELAHRALNLVNGYVFKG--KPMI 154 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~-aFV~f~~~~~A~~Al~~l~g~~l~g--r~l~ 154 (167)
..|||+||++.+|+++|+.+|++ ||.|..+++.. +.+|| |||+|.+.++|..|+..|||..|.| ++|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~--------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFT--------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEE--------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEc--------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 45789999999999999999999 99999886431 23677 9999999999999999999999988 9999
Q ss_pred EEeecCCC
Q 039336 155 IQFGRNPA 162 (167)
Q Consensus 155 v~~a~~~~ 162 (167)
|+||+.+.
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998764
No 152
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=1.2e-18 Score=131.26 Aligned_cols=80 Identities=26% Similarity=0.441 Sum_probs=73.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|++ ||.|..++++.+ .+.++|||||+|.+.++|.+|+..|||..|.|++|.|.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d-----~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCD-----ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-----TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cccceECCcccccHHHHHHHHHhh-cCCeEEEEeecc-----CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 478999999999999999999999 999999886533 45689999999999999999999999999999999999
Q ss_pred eecCCC
Q 039336 157 FGRNPA 162 (167)
Q Consensus 157 ~a~~~~ 162 (167)
+|+++.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998753
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=1e-18 Score=126.63 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=68.8
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eeeEE
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--KPMII 155 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g--r~l~v 155 (167)
.+|||+||++.+|+++|+.+|++ ||.|..+.+. +..++|||||+|.+.++|..|+..|||..|.| +.|+|
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~-------~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITF-------TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEE-------ESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEE-------eCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 56899999999999999999999 9999888742 12368999999999999999999999999965 99999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
+||+.+.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9999764
No 154
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=114.00 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=61.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCC
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYV--FKG 150 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~--l~g 150 (167)
...+.++|||+|||+++|+++|+.+|++ ||.|.+++++. .+||||||+|.+.++|.+ ++|.. +.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g 73 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKG 73 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCC
Confidence 3456789999999999999999999999 99999887542 289999999999999983 56655 569
Q ss_pred eeeEEEeecCCCC
Q 039336 151 KPMIIQFGRNPAA 163 (167)
Q Consensus 151 r~l~v~~a~~~~~ 163 (167)
+.|.|.+|+++..
T Consensus 74 ~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 74 ISVHISNAEPKHN 86 (89)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEEEcCCCCc
Confidence 9999999987754
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=2e-18 Score=124.78 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
+....++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLV---KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEE---ECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEE---ecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 3445688999999999999999999999 9999988864 23458999999999999999999999999999999999
Q ss_pred eEEEee
Q 039336 153 MIIQFG 158 (167)
Q Consensus 153 l~v~~a 158 (167)
|.|+||
T Consensus 166 l~V~~A 171 (172)
T 2g4b_A 166 LLVQRA 171 (172)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=3.4e-18 Score=126.26 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=77.1
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEE---CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEee---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 56789999999999999999999999 99998887642 245899999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 039336 155 IQFGRNPAA 163 (167)
Q Consensus 155 v~~a~~~~~ 163 (167)
|.+|+++..
T Consensus 188 v~~a~~~~~ 196 (198)
T 2yh0_A 188 VQRASVGAK 196 (198)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999987653
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=121.43 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=69.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCe----eeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSI----DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i----~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
...++|||+|||+++|+++|+++|++ ||.| ..++++ ...+|+++|||||+|.+.++|.+||.. |+..|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~----~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFV----TYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEE----ECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEE----ECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 35688999999999999999999999 9875 566643 235899999999999999999999965 9999999
Q ss_pred eeeEEEeecC
Q 039336 151 KPMIIQFGRN 160 (167)
Q Consensus 151 r~l~v~~a~~ 160 (167)
|.|.|..|..
T Consensus 95 R~i~V~~a~~ 104 (123)
T 2dha_A 95 RYIELFRSTA 104 (123)
T ss_dssp CEECCEEECH
T ss_pred eEEEEEECCH
Confidence 9999988753
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=112.68 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=67.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
..++|||+|||+.+++++|+.+|++ ||.|..+ +....+|+ ||||+|.+.++|.+|+. |||..|.|+.|.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v-----~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V 76 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV-----VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRV 76 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE-----EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE-----EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEE
Confidence 4578999999999999999999999 9999865 22244454 99999999999999998 9999999999999
Q ss_pred EeecCCCC
Q 039336 156 QFGRNPAA 163 (167)
Q Consensus 156 ~~a~~~~~ 163 (167)
.+|..+..
T Consensus 77 ~~a~~~~~ 84 (94)
T 2e5g_A 77 RPREQKEF 84 (94)
T ss_dssp BCSCCSCC
T ss_pred EECCcCCC
Confidence 99976543
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=9.3e-19 Score=126.01 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=73.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+.++|||+|||+.+++++|+.+|++ ||.|..++++.+ ..+|.++|||||+|.+.++|.+|+. ++|..+.|++|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLD---KDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCS---SSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEc---CCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 3578999999999999999999999 999998886432 4679999999999999999999996 8999999999999
Q ss_pred EeecCC
Q 039336 156 QFGRNP 161 (167)
Q Consensus 156 ~~a~~~ 161 (167)
.+|.++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999876
No 160
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=4.4e-18 Score=117.88 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
....++++|||+|| .+++++|+.+|++ ||.|..+.+. .++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 33456799999996 6999999999999 9999887642 5899999999999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 039336 152 PMIIQFGRNPAAA 164 (167)
Q Consensus 152 ~l~v~~a~~~~~~ 164 (167)
.|.|.||+.+...
T Consensus 102 ~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 102 QLKVNIARKQPML 114 (121)
T ss_dssp BCEEEECCSSCC-
T ss_pred EEEEEEeCCCCCC
Confidence 9999999877543
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.1e-18 Score=121.59 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=72.5
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
++|||+|||+++++++|+.+|++ ||.|.+++++. ..+|+++|||||+|.+.++|.+|+..|+|..+.|++|.|.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMI----DKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEEC----CCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEE----CCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 57999999999999999999999 99999887542 34688999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 039336 158 GRNPAA 163 (167)
Q Consensus 158 a~~~~~ 163 (167)
+.....
T Consensus 76 ~~~~~~ 81 (166)
T 3md3_A 76 AFQSQQ 81 (166)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 976543
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=5e-18 Score=125.17 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.+.++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+.. +|..|.|+.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEee---cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 34589999999999999999999999 99999888643 356899999999999999999999965 89999999999
Q ss_pred EEeecCCCCCC
Q 039336 155 IQFGRNPAAAK 165 (167)
Q Consensus 155 v~~a~~~~~~k 165 (167)
|.+|.++...+
T Consensus 177 v~~a~~k~~~~ 187 (196)
T 1l3k_A 177 VRKALSKQEMA 187 (196)
T ss_dssp EEECC------
T ss_pred EEecCChhHhc
Confidence 99998876543
No 163
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.9e-18 Score=120.54 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=69.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCee--eeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSID--AAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~--~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
...+.++|||+|||+.+|+++|+++|++ |+ |. .|+++. ...|+++|||||+|.+.++|.+||. +++..|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~-~~-i~~~~v~i~~----d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSG-LE-IVPNGITLPV----DPEGKITGEAFVQFASQELAEKALG-KHKERIGH 110 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTT-SC-EEEEEEECCC----CSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc-CC-ceeeEEEEEE----CCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC
Confidence 3445689999999999999999999999 94 55 676543 2349999999999999999999996 58899999
Q ss_pred eeeEEEeecCC
Q 039336 151 KPMIIQFGRNP 161 (167)
Q Consensus 151 r~l~v~~a~~~ 161 (167)
|.|.|..|..+
T Consensus 111 R~I~V~~a~~~ 121 (126)
T 2hgm_A 111 RYIEVFKSSQE 121 (126)
T ss_dssp BCCCCEEECHH
T ss_pred EEEEEEECCHH
Confidence 99999988643
No 164
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=3.2e-18 Score=111.14 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=64.3
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhcc----C-------CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLF----G-------SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV 143 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~----G-------~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l 143 (167)
.+.++|||+|||+.+++++|+.+|++ | | .|..+++. .++|||||+|.+.++|.+|+ .|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~---------~~kg~afV~f~~~~~a~~A~-~l 72 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AF 72 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEEC---------SSSSEEEEEESSHHHHHHHG-GG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEec---------CCCcEEEEEcCCHHHHHHHH-hc
Confidence 45689999999999999999999999 9 8 77666532 34899999999999999999 99
Q ss_pred CCceeCCeeeEEEe
Q 039336 144 NGYVFKGKPMIIQF 157 (167)
Q Consensus 144 ~g~~l~gr~l~v~~ 157 (167)
||..|.|+.|+|+.
T Consensus 73 ~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 73 DGIIFQGQSLKIRR 86 (87)
T ss_dssp TTCEETTEECEEEC
T ss_pred CCCEECCeEEEEeC
Confidence 99999999999974
No 165
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=4.8e-18 Score=125.22 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=73.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+|+++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+.. +|..+.|+.|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~---~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVM---RDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE---EcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 345689999999999999999999999 9999998864 3356799999999999999999999955 9999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|.++....
T Consensus 85 ~v~~~~~~~ 93 (196)
T 1l3k_A 85 EPKRAVSRE 93 (196)
T ss_dssp EEEECCC--
T ss_pred eeecccCcc
Confidence 999997654
No 166
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=7.8e-19 Score=124.51 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=71.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
...++|||+|||+++|+++|+++|++ || +..++++. ..+|+++|||||+|.+.++|.+|| .+|+..|.||.|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~~v~i~~----d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSP-LN-PVRVHIEI----GPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCS-CC-CSEEECCC----SSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEE----CCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 45678999999999999999999999 99 65776543 345999999999999999999999 8999999999999
Q ss_pred EEeecCCC
Q 039336 155 IQFGRNPA 162 (167)
Q Consensus 155 v~~a~~~~ 162 (167)
|.++....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 99987654
No 167
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=1.6e-17 Score=112.33 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCCCEEEecCCCC-----CCCHHHHHHHHhhccCCeeeeeeeeeeeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 039336 74 GNPASVLYIKNLAK-----DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYV 147 (167)
Q Consensus 74 ~~~~~~lfV~nLp~-----~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~-~g~~kg~aFV~f~~~~~A~~Al~~l~g~~ 147 (167)
..|+++|+|+||.. +-++++|+.+|++ ||.|.++.++.+ .. +++++|||||+|.+.++|.+|+..|||..
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~---~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEI---PGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEEC---SSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecC---CCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 35788999999963 2378999999999 999999886422 22 36899999999999999999999999999
Q ss_pred eCCeeeEEEeecC
Q 039336 148 FKGKPMIIQFGRN 160 (167)
Q Consensus 148 l~gr~l~v~~a~~ 160 (167)
+.||.|.|.+|..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999863
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=8.1e-18 Score=122.15 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
..+.++|||+|||+.+++++|+.+|++ ||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~--------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV--------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE--------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe--------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345689999999999999999999999 9988432 4688999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|+||++++
T Consensus 167 ~v~~a~~k~ 175 (175)
T 1fje_B 167 SLYYTGEKG 175 (175)
T ss_dssp EEEECSSCC
T ss_pred EEEecCCCC
Confidence 999998764
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=1.3e-17 Score=119.88 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=73.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--e
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG--K 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g--r 151 (167)
..++++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|||..+.| +
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNIL---RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEE---EcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 346789999999999999999999999 9999988764 334589999999999999999999999999999987 9
Q ss_pred eeEEEee
Q 039336 152 PMIIQFG 158 (167)
Q Consensus 152 ~l~v~~a 158 (167)
+|+|.||
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999987
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1e-17 Score=116.49 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=67.6
Q ss_pred CCCCE--EEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC-
Q 039336 75 NPASV--LYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQ-AFVTFPSVELAHRALNLVNGYVFKG- 150 (167)
Q Consensus 75 ~~~~~--lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~-aFV~f~~~~~A~~Al~~l~g~~l~g- 150 (167)
.|+++ |||+||++.+++++|+.+|++ ||.|..+++. .. .|| |||+|.+.++|..|+..|||..|.|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~-----~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIF-----KR----NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEE-----ES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEE-----eC----CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 45555 679999999999999999999 9999888742 11 386 9999999999999999999999987
Q ss_pred -eeeEEEeecCCC
Q 039336 151 -KPMIIQFGRNPA 162 (167)
Q Consensus 151 -r~l~v~~a~~~~ 162 (167)
++|+|+||+.+.
T Consensus 91 ~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 91 CCTLKIEYARPTR 103 (124)
T ss_dssp BSEEEEECCSCSC
T ss_pred CeEEEEEEecCCc
Confidence 699999998764
No 171
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5e-18 Score=117.85 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=68.9
Q ss_pred CEEEecCC----CCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCC----HHH----HHHHHH--Hh
Q 039336 78 SVLYIKNL----AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS----VEL----AHRALN--LV 143 (167)
Q Consensus 78 ~~lfV~nL----p~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~----~~~----A~~Al~--~l 143 (167)
+.|||+|| |+.+++.+|+.+|++ ||.|.++.++ .++.||.++|||||+|.+ +.. |.+|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li---~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAF---NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEE---ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEE---ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 57999999 999999999999999 9999999875 448899999999999996 433 888988 78
Q ss_pred CCceeCCeeeEEEeec
Q 039336 144 NGYVFKGKPMIIQFGR 159 (167)
Q Consensus 144 ~g~~l~gr~l~v~~a~ 159 (167)
+|..|.||+|+|.+-+
T Consensus 79 ng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNK 94 (136)
T ss_dssp TCEEETTEEEEEEECC
T ss_pred cCCeecCcEEEEEECc
Confidence 9999999999999865
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=116.02 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=60.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQE---GRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~---g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
...++|||+|||+.+++++|+.+|++ ||.|. +.++.+ ..+ |+++|||||+|.+.++|++||..|++ +.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~---~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~ 78 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHK---AESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGK 78 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTS---SSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeec---CCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCc
Confidence 45688999999999999999999999 99997 554322 334 79999999999999999999999832 4444
Q ss_pred eeEEE
Q 039336 152 PMIIQ 156 (167)
Q Consensus 152 ~l~v~ 156 (167)
.|.+.
T Consensus 79 ~~~~~ 83 (114)
T 2dnl_A 79 LYLCV 83 (114)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 44444
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=1.8e-17 Score=129.15 Aligned_cols=84 Identities=36% Similarity=0.584 Sum_probs=75.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHH----HHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFF----FIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~----~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
...++++|||+|||+.+++++|+ .+|++ ||.|..|++ ..+|+++|||||+|.+.++|.+|+..|||..|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILV------SRSLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEE------cCCCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 34678999999999999999966 89999 999987763 24889999999999999999999999999999
Q ss_pred CCeeeEEEeecCCCC
Q 039336 149 KGKPMIIQFGRNPAA 163 (167)
Q Consensus 149 ~gr~l~v~~a~~~~~ 163 (167)
.|+.|+|.|++.+..
T Consensus 78 ~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 78 YDKPMRIQYAKTDSD 92 (282)
T ss_pred CCcEEEEEEeccCcc
Confidence 999999999987653
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-18 Score=110.82 Aligned_cols=79 Identities=19% Similarity=0.292 Sum_probs=65.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.++++|||+|||+.+++++|+.+|++ ||.|..++++. .++|||||+|.+.++|++|+. .+..+.|++|.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~ 71 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPK--------PFRAFAFVTFADDQIAQSLCG--EDLIIKGISVH 71 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCS--------SCCSCCEEECSCHHHHHHTTT--CEEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEec--------CCCCEEEEEECCHHHHHHHhc--CCceeCCEEEE
Confidence 35789999999999999999999999 99998877531 279999999999999975431 13446999999
Q ss_pred EEeecCCCCC
Q 039336 155 IQFGRNPAAA 164 (167)
Q Consensus 155 v~~a~~~~~~ 164 (167)
|.+|+++...
T Consensus 72 v~~a~~~~~~ 81 (88)
T 1wf0_A 72 ISNAEPKHNS 81 (88)
T ss_dssp EECCCCCCCC
T ss_pred EEecCCCCCC
Confidence 9999877654
No 175
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=7.1e-18 Score=115.65 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee--
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP-- 152 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~-- 152 (167)
...++|||+|||+.+++++|+.+|++ ||.|..+.++ .. |||||+|.+.++|.+||..|||..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~------~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVY------RD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEEC------TT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEe------cC----CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 34588999999999999999999999 9999887743 11 99999999999999999999999999998
Q ss_pred ---eEEEeecCCC
Q 039336 153 ---MIIQFGRNPA 162 (167)
Q Consensus 153 ---l~v~~a~~~~ 162 (167)
|+|..+..+.
T Consensus 83 ~~~i~v~~~~~~~ 95 (115)
T 3beg_B 83 TAYIRVKVDGPRS 95 (115)
T ss_dssp CCBCEEEECC---
T ss_pred eEEEEeccCCCCC
Confidence 7777776543
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.6e-17 Score=120.14 Aligned_cols=79 Identities=28% Similarity=0.466 Sum_probs=71.1
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---Ce
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK---GK 151 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~---gr 151 (167)
.++++|||+|||+.+|+++|+.+|++ ||.|..++++. ..+|.++|||||+|.+.++|.+|+..|||..+. |+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~----~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~ 167 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILR----GPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS 167 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE----CTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEE----CCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC
Confidence 35689999999999999999999999 99999888542 357899999999999999999999999998875 49
Q ss_pred eeEEEee
Q 039336 152 PMIIQFG 158 (167)
Q Consensus 152 ~l~v~~a 158 (167)
+|+|.||
T Consensus 168 ~l~V~~a 174 (175)
T 3nmr_A 168 PMVVKFA 174 (175)
T ss_dssp CCEEEEC
T ss_pred CeEEEec
Confidence 9999998
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.2e-17 Score=118.39 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=71.9
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee--
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP-- 152 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~-- 152 (167)
.++++|||+|||+.+++++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 35688999999999999999999999 99999888643 3558999999999999999999999999999999975
Q ss_pred eEEEee
Q 039336 153 MIIQFG 158 (167)
Q Consensus 153 l~v~~a 158 (167)
|+|.||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 888886
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.5e-17 Score=124.32 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+.++|||+|||+++++++|+.+|++ ||.|..++++.+ ..+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWD---SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC----CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeec---CCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3478999999999999999999999 999998886432 457899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 039336 156 QFGRNPA 162 (167)
Q Consensus 156 ~~a~~~~ 162 (167)
.++....
T Consensus 103 ~~~~~~~ 109 (216)
T 2qfj_A 103 GRPSNIG 109 (216)
T ss_dssp ECCSCCG
T ss_pred ecCCCcc
Confidence 9887654
No 179
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7e-17 Score=110.11 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=71.2
Q ss_pred CCCCCCCEEEecCCCCCCC-----------HHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHH
Q 039336 72 AAGNPASVLYIKNLAKDVI-----------PDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRAL 140 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t-----------~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al 140 (167)
....++++|+|+||..... +++|+.+|++ ||.|..+.+ . ...++|||||+|.+.++|.+|+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i----~---~~~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL----F---DRHPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE----E---TTCTTCEEEEECSCHHHHHHHH
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE----e---cCCCCEEEEEEECCHHHHHHHH
Confidence 3456789999999943322 5799999999 999988753 1 2248999999999999999999
Q ss_pred HHhCCceeCCeeeEEEeecCCCCCC
Q 039336 141 NLVNGYVFKGKPMIIQFGRNPAAAK 165 (167)
Q Consensus 141 ~~l~g~~l~gr~l~v~~a~~~~~~k 165 (167)
..|||..|.||+|+|.+|..+...+
T Consensus 82 ~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 82 QTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp HHSTTCEETTEECEEEECCSCCCSS
T ss_pred HHcCCCEECCcEEEEEEeCCCCCcc
Confidence 9999999999999999998765443
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=1e-17 Score=121.65 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 73 AGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
...++++|||+|||+.+++++|+.+|.+ ||.+..+. +....+|.++|||||+|.+.++|.+|+ .|||..+.|++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~~~----~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 82 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISE-LFAKNDLA----VVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNE 82 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHTCC----CCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcceEE----EEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeE
Confidence 4456789999999999999999999999 99876522 333457899999999999999999999 69999999999
Q ss_pred eEEEeecCCCC
Q 039336 153 MIIQFGRNPAA 163 (167)
Q Consensus 153 l~v~~a~~~~~ 163 (167)
|.|.++..+..
T Consensus 83 l~v~~~~~~~~ 93 (175)
T 1fje_B 83 IKLEKPKGRDS 93 (175)
T ss_dssp EEEECCCCSSC
T ss_pred EEEecCCCccc
Confidence 99999987643
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.71 E-value=4.8e-17 Score=121.15 Aligned_cols=83 Identities=24% Similarity=0.327 Sum_probs=70.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~ 156 (167)
.++|||+|||+.+++++|+.+|++ ||.|..++++. ..+|.++|||||+|.+.++|.+|+..+ +..+.|++|.|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~----~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRR----TLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEEEE----CTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEEEE----CCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 478999999999999999999999 99999988543 346899999999999999999999655 459999999999
Q ss_pred eecCCCCCC
Q 039336 157 FGRNPAAAK 165 (167)
Q Consensus 157 ~a~~~~~~k 165 (167)
+++.-...|
T Consensus 183 ~~~~y~~~K 191 (193)
T 2voo_A 183 FKDDYFAKK 191 (193)
T ss_dssp ETTTC----
T ss_pred EhHHHHHHh
Confidence 987554433
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.5e-17 Score=127.51 Aligned_cols=78 Identities=18% Similarity=0.369 Sum_probs=69.4
Q ss_pred CCCCEEEecCCCCCC---------CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 039336 75 NPASVLYIKNLAKDV---------IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 145 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~---------t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g 145 (167)
.++++|||+||++.+ ++++|+.+|++ ||.|.+++++ .++|||||+|.+.++|+.|+..|+|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~---------~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYV---------ESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEE---------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 457899999999998 79999999999 9999988753 2699999999999999999999999
Q ss_pred cee------------CCeeeEEEeecCCC
Q 039336 146 YVF------------KGKPMIIQFGRNPA 162 (167)
Q Consensus 146 ~~l------------~gr~l~v~~a~~~~ 162 (167)
..| .|+.|.|.||+.++
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CEEeccccccccccCCCCEEEEEEccCCC
Confidence 999 89999999998654
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=4.7e-17 Score=117.62 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC---C
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEG--RMRGQAFVTFPSVELAHRALNLVNGYVFK---G 150 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g--~~kg~aFV~f~~~~~A~~Al~~l~g~~l~---g 150 (167)
.+++|||+|||+.+++++|+.+|++ ||.|..++++.+ ..+| +++|||||+|.+.++|.+|+..|+|..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRD---RSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEE---CSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEec---CCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 4578999999999999999999999 999999886533 4454 89999999999999999999999998875 6
Q ss_pred eeeEEEeecCCC
Q 039336 151 KPMIIQFGRNPA 162 (167)
Q Consensus 151 r~l~v~~a~~~~ 162 (167)
+++.+.++....
T Consensus 78 ~~~~~~~~~~~~ 89 (175)
T 3nmr_A 78 HPIQMKPADSEK 89 (175)
T ss_dssp SCCEEEECGGGC
T ss_pred cceEEccccccc
Confidence 888888887554
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=2.7e-17 Score=118.29 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=71.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
++++|||+|||+++|+++|+.+|++ ||.|..++++. ...+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMK---DPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCC---CTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEE---CCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccc
Confidence 5689999999999999999999999 99999888643 35689999999999999999999997 467899999999
Q ss_pred EeecCC
Q 039336 156 QFGRNP 161 (167)
Q Consensus 156 ~~a~~~ 161 (167)
.++..+
T Consensus 76 ~~~~~~ 81 (167)
T 2cjk_A 76 KRAIPR 81 (167)
T ss_dssp EECCCH
T ss_pred ccccch
Confidence 988654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=5.8e-17 Score=123.18 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=71.9
Q ss_pred CCCCCCEEEecCCCC-CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 73 AGNPASVLYIKNLAK-DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 73 ~~~~~~~lfV~nLp~-~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
+..++++|||+|||+ .+++++|+.+|++ ||.|..++++.+ .+|||||+|.+.++|.+|+..|+|..|.|+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~--------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 100 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFN--------KKENALVQMADGNQAQLAMSHLNGHKLHGK 100 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCT--------TSCCEEEEESCHHHHHHHHHHHTTCBCSSS
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEEC--------CCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 346789999999999 9999999999999 999988875422 289999999999999999999999999999
Q ss_pred eeEEEeecCC
Q 039336 152 PMIIQFGRNP 161 (167)
Q Consensus 152 ~l~v~~a~~~ 161 (167)
.|.|.+++..
T Consensus 101 ~l~v~~a~~~ 110 (229)
T 2adc_A 101 PIRITLSKHQ 110 (229)
T ss_dssp BCEEECCSCC
T ss_pred EEEEEEecCc
Confidence 9999999865
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=9.9e-17 Score=124.91 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=70.9
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-C
Q 039336 72 AAGNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-G 150 (167)
Q Consensus 72 ~~~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~-g 150 (167)
....++++|||+|||+.+++++|+.+|++ ||.|..+++. .+ .+|||||+|.+.++|.+|+..|||..|. |
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~-------~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLV-------PG-RHDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEe-------cC-CCcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 34456789999999999999999999999 9999888753 11 2699999999999999999999999999 9
Q ss_pred eeeEEEeecC
Q 039336 151 KPMIIQFGRN 160 (167)
Q Consensus 151 r~l~v~~a~~ 160 (167)
+.|+|+||+.
T Consensus 273 ~~l~v~~akk 282 (282)
T 3pgw_A 273 NAMKISFAKK 282 (282)
T ss_pred CEEEEEEecC
Confidence 9999999973
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=5.7e-17 Score=126.87 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHHhhccCCeeeeeeeeeeeecC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 74 GNPASVLYIKNLAKD-VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ-EGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~-~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~-~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
..++++|||+|||+. +++++|+.+|++ ||.|..++++.+ .. +|.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~---~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~ 281 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAG---QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR 281 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSC---CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEec---CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc
Confidence 346789999999999 999999999999 999998876432 22 4899999999999999999999 9999999999
Q ss_pred eeEEEeecCCC
Q 039336 152 PMIIQFGRNPA 162 (167)
Q Consensus 152 ~l~v~~a~~~~ 162 (167)
+|.|.||+++.
T Consensus 282 ~i~V~~a~~k~ 292 (292)
T 2ghp_A 282 EISVSLADKKP 292 (292)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999998763
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=8.8e-17 Score=125.32 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=76.2
Q ss_pred CCCCEEEecCCCCCC-CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 75 NPASVLYIKNLAKDV-IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~-t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
.++++|||+|||+.+ ++++|+.+|++ ||.|..++++ ...+|+++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~----~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLA----CGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEE----ECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEE----ECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 457899999999995 99999999999 9999988854 34579999999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 039336 154 IIQFGRNPAA 163 (167)
Q Consensus 154 ~v~~a~~~~~ 163 (167)
+|.||.++..
T Consensus 257 ~v~~a~~~~~ 266 (284)
T 3smz_A 257 RVSFCAPGPP 266 (284)
T ss_dssp EEEECCSSSC
T ss_pred EEEEecCCCc
Confidence 9999987764
No 189
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.69 E-value=1.6e-16 Score=107.43 Aligned_cols=82 Identities=21% Similarity=0.371 Sum_probs=69.1
Q ss_pred CCCCCEEEecCC--CCCCC--------HHHHHHHHhhccCCeeeeeeeeeeeecC--CCCcccEEEEEeCCHHHHHHHHH
Q 039336 74 GNPASVLYIKNL--AKDVI--------PDDFFFIFGSLFGSIDAAKCGLTVKLMQ--EGRMRGQAFVTFPSVELAHRALN 141 (167)
Q Consensus 74 ~~~~~~lfV~nL--p~~~t--------~~~L~~~F~~~~G~i~~~~~~~~i~~~~--~g~~kg~aFV~f~~~~~A~~Al~ 141 (167)
+.|+++|.+.|+ |..+. .++|+..|++ ||.|.++.++.+ .. +++++|||||+|.+.++|.+|+.
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~---~~~~~~~~~G~~fV~f~~~~~A~~Ai~ 77 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRP---VDGVEVPGCGKIFVEFTSVFDCQKAMQ 77 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCC---BTTBCCTTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEecc---CCCCCcCCcEEEEEEECCHHHHHHHHH
Confidence 457899999998 33333 3689999999 999999886533 22 24789999999999999999999
Q ss_pred HhCCceeCCeeeEEEeec
Q 039336 142 LVNGYVFKGKPMIIQFGR 159 (167)
Q Consensus 142 ~l~g~~l~gr~l~v~~a~ 159 (167)
.|||..+.||+|+|+|+.
T Consensus 78 ~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 78 GLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCCEEEEEEeC
Confidence 999999999999999975
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=2.5e-16 Score=122.71 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.++++|||+|||+.+++++|+.+|++ ||.|..++++ ....+|.++|||||+|.+.++|.+|+..|+|..+.|++|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLV---YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEE---ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEE---eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35689999999999999999999999 9999988764 3356899999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 039336 155 IQFGRNPA 162 (167)
Q Consensus 155 v~~a~~~~ 162 (167)
|.++....
T Consensus 169 v~~a~~~~ 176 (284)
T 3smz_A 169 VHWTDAGQ 176 (284)
T ss_dssp EEECCGGG
T ss_pred EEECCCCC
Confidence 99997654
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=118.20 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccC-CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GK 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G-~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~-gr 151 (167)
..|+++|||+|||+.+++++|+.+|++ || .|..+++. . ..+|||||+|.+.++|.+|+..|||..+. |+
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~------~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFF------Q--KDRKMALIQMGSVEEAVQALIDLHNHDLGENH 187 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEES------S--TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEE------e--CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCC
Confidence 356899999999999999999999999 99 89877642 1 24899999999999999999999999999 99
Q ss_pred eeEEEeecCC
Q 039336 152 PMIIQFGRNP 161 (167)
Q Consensus 152 ~l~v~~a~~~ 161 (167)
+|+|.||+++
T Consensus 188 ~l~v~~a~~~ 197 (198)
T 1qm9_A 188 HLRVSFSKST 197 (198)
T ss_dssp SCCEEEECCC
T ss_pred eEEEEeeccc
Confidence 9999999864
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=118.43 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=69.0
Q ss_pred CCEEEecCCCC-CCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEE
Q 039336 77 ASVLYIKNLAK-DVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMII 155 (167)
Q Consensus 77 ~~~lfV~nLp~-~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v 155 (167)
+++|||+|||+ .+++++|+.+|++ ||.|..++++.+ .+|||||+|.+.++|.+|+..|||..+.|++|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFN--------KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTT--------CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 57899999999 9999999999999 999988775421 2899999999999999999999999999999999
Q ss_pred EeecCC
Q 039336 156 QFGRNP 161 (167)
Q Consensus 156 ~~a~~~ 161 (167)
.+++.+
T Consensus 74 ~~a~~~ 79 (198)
T 1qm9_A 74 TLSKHQ 79 (198)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.8e-16 Score=114.48 Aligned_cols=85 Identities=20% Similarity=0.318 Sum_probs=66.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeee--eeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCG--LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~--~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
++++|||+|||+++|+++|+.+|++ ||.+..+... ..+.....++++|||||+|.+.++|.+|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 5689999999999999999999999 9432211000 00111223467999999999999999999 999999999999
Q ss_pred EEEeecCCC
Q 039336 154 IIQFGRNPA 162 (167)
Q Consensus 154 ~v~~a~~~~ 162 (167)
.|.++....
T Consensus 81 ~v~~~~~~~ 89 (172)
T 2g4b_A 81 KIRRPHDYQ 89 (172)
T ss_dssp EEECCSSCC
T ss_pred eecCCcccC
Confidence 999987654
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.6e-16 Score=119.61 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=71.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccC-CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK-GK 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G-~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~-gr 151 (167)
..++++|||+|||+.+++++|+.+|++ || .|..+++.. ..+|||||+|.+.++|.+|+..|||..+. |+
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 218 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENH 218 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCC
Confidence 356799999999999999999999999 99 998877421 25899999999999999999999999999 99
Q ss_pred eeEEEeecCC
Q 039336 152 PMIIQFGRNP 161 (167)
Q Consensus 152 ~l~v~~a~~~ 161 (167)
+|+|.||+++
T Consensus 219 ~l~v~~a~~~ 228 (229)
T 2adc_A 219 HLRVSFSKST 228 (229)
T ss_dssp BCEEEECSSC
T ss_pred eEEEEEecCC
Confidence 9999999864
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=3.4e-16 Score=121.18 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=69.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
.++++|||+|||+++|+++|+.+|++ ||.|..+.+. +++|||||+|.+.++|.+|+..|+|..+.|+.|.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~---------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFIN---------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEe---------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 45689999999999999999999999 9999887642 4689999999999999999999999999999999
Q ss_pred EEeecC
Q 039336 155 IQFGRN 160 (167)
Q Consensus 155 v~~a~~ 160 (167)
|.++..
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 999865
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2e-16 Score=116.64 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=67.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeee--eeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeee
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCG--LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPM 153 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~--~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l 153 (167)
.+++|||+|||+++++++|+.+|++ ||.|..+... ..+.....++++|||||+|.+.++|.+|+ .|||..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 5689999999999999999999999 9644322100 00112234678999999999999999999 999999999999
Q ss_pred EEEeecCC
Q 039336 154 IIQFGRNP 161 (167)
Q Consensus 154 ~v~~a~~~ 161 (167)
.|.++...
T Consensus 81 ~v~~~~~~ 88 (198)
T 2yh0_A 81 KIRRPHDY 88 (198)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998765
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=2.6e-16 Score=118.19 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=67.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCe--eeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSI--DAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i--~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
..|+++|||+|||+.+|+++|+++|++ ||.| ..+++. ...|..+|||||+|.+.++|.+||..|||..|.|+
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~-----~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVF-----SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEEC-----SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEE-----cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 356889999999999999999999999 9998 666643 22356679999999999999999999999999886
Q ss_pred ----eeEEEee
Q 039336 152 ----PMIIQFG 158 (167)
Q Consensus 152 ----~l~v~~a 158 (167)
++.|.||
T Consensus 194 ~~~~p~~vk~~ 204 (205)
T 3tyt_A 194 NGPYPYTLKLC 204 (205)
T ss_dssp SSSSCEECEEE
T ss_pred CCCcceEEEec
Confidence 5777765
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=1.1e-15 Score=118.19 Aligned_cols=83 Identities=25% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeC---C
Q 039336 75 NPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN-GYVFK---G 150 (167)
Q Consensus 75 ~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~-g~~l~---g 150 (167)
.++++|||+|||+.+|+++|+.+|++ ||.|..+.++. ..+|+++|||||+|.+.++|.+|+..|| |..+. |
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~----~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVV----DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEE----ETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeee----CCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 45789999999999999999999999 99999988643 3589999999999999999999999995 55554 9
Q ss_pred eeeEEEeecCCC
Q 039336 151 KPMIIQFGRNPA 162 (167)
Q Consensus 151 r~l~v~~a~~~~ 162 (167)
++|.|.++....
T Consensus 169 r~i~v~~~~~~~ 180 (261)
T 3sde_A 169 RPVIVEPMEQFD 180 (261)
T ss_dssp CBCEEEECCCEE
T ss_pred ceEEEeeccccC
Confidence 999999997654
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.64 E-value=2e-15 Score=104.05 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCCCEEEecCCCC--CC---CHHHHHHHHhhccCCeeeeeeeeeeee-cCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 039336 75 NPASVLYIKNLAK--DV---IPDDFFFIFGSLFGSIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVF 148 (167)
Q Consensus 75 ~~~~~lfV~nLp~--~~---t~~~L~~~F~~~~G~i~~~~~~~~i~~-~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l 148 (167)
.|+++|+++|+-. ++ .+++|+..|++ ||.|.++.++.+-.. ..+++++|||||+|.+.++|.+|+..|||..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4789999999842 22 36899999999 999999987644211 12567889999999999999999999999999
Q ss_pred CCeeeEEEeec
Q 039336 149 KGKPMIIQFGR 159 (167)
Q Consensus 149 ~gr~l~v~~a~ 159 (167)
.||.|+|.|+.
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999985
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=1.5e-16 Score=107.40 Aligned_cols=72 Identities=18% Similarity=0.285 Sum_probs=61.4
Q ss_pred ecCCCCCCCHHHHHHHH------------hhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 039336 82 IKNLAKDVIPDDFFFIF------------GSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK 149 (167)
Q Consensus 82 V~nLp~~~t~~~L~~~F------------~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~ 149 (167)
+.|||+.+++++|+..| ++ ||.|.++.++. ..+|+++|||||+|.+.++|.+|+..|||..+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~----~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCD----NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECC----SSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEe----CCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 45677777777777666 99 99999988642 345789999999999999999999999999999
Q ss_pred CeeeEEEee
Q 039336 150 GKPMIIQFG 158 (167)
Q Consensus 150 gr~l~v~~a 158 (167)
||+|+|+|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999987
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=1.1e-15 Score=119.52 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhccC-CeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeE
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLFG-SIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMI 154 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~G-~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~ 154 (167)
+.++|||+|||+.+++++|+.+|++ || .|..++++. ...|.++|||||+|.+.++|.+|+..|+|..+.|+.|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPS----LRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4689999999999999999999999 99 998887542 23478999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 039336 155 IQFGRNPA 162 (167)
Q Consensus 155 v~~a~~~~ 162 (167)
|.+|.+..
T Consensus 191 v~~a~~~~ 198 (292)
T 2ghp_A 191 TKVSNPLE 198 (292)
T ss_dssp EEECCCC-
T ss_pred EEECCCCc
Confidence 99997654
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=8.9e-15 Score=117.54 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=65.8
Q ss_pred CCCCCEEEecC--CCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---
Q 039336 74 GNPASVLYIKN--LAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVF--- 148 (167)
Q Consensus 74 ~~~~~~lfV~n--Lp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l--- 148 (167)
..|+.+|||+| |++.+|+++|+++|++ ||.|.++.+. .+||||||+|.+.++|++|++.|||..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~---------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECC---------TTCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 56789999999 5789999999999999 9999876532 2689999999999999999999999987
Q ss_pred CCe--eeEEEeec
Q 039336 149 KGK--PMIIQFGR 159 (167)
Q Consensus 149 ~gr--~l~v~~a~ 159 (167)
.|+ +|.|.|+.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 355 68888874
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=97.38 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEeecCCCCCC
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQFGRNPAAAK 165 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~a~~~~~~k 165 (167)
..+++++|+.+|++ ||.|..+.++ ++++|||||+|.+.++|..|+..++| +.|++|+|.||+.+...+
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQDA 94 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCCC
Confidence 46899999999999 9999887643 47899999999999999999988555 679999999998776443
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=7.8e-14 Score=95.46 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=64.1
Q ss_pred CCCCCEEEecCCCCCC----------CHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 039336 74 GNPASVLYIKNLAKDV----------IPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV 143 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~----------t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l 143 (167)
..|+++|.+.|+=..- .+++|+..|++ ||.|..+.+. . ..++|||||+|.+.++|.+|+..|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~-----~--~~~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVD-----K--NSAQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEEC-----T--TCTTCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEe-----c--CCCcEEEEEEECCHHHHHHHHHHh
Confidence 3467889999973221 12478999999 9999887643 1 236999999999999999999999
Q ss_pred CCceeCCeeeEEEeec
Q 039336 144 NGYVFKGKPMIIQFGR 159 (167)
Q Consensus 144 ~g~~l~gr~l~v~~a~ 159 (167)
||..+.||.|+|.|+.
T Consensus 76 nG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 76 HGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCEETTEECEEEEEC
T ss_pred CCCEECCEEEEEEEEc
Confidence 9999999999999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=85.00 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=64.0
Q ss_pred CCCCCEEEecCCCC----CCCH----HHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 039336 74 GNPASVLYIKNLAK----DVIP----DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNG 145 (167)
Q Consensus 74 ~~~~~~lfV~nLp~----~~t~----~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g 145 (167)
++|..||+|...+. .+-. .+|...|++ ||.|..+++.. +.+||+|.+.++|.+|+. |||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG 70 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNG 70 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCC
Confidence 56788999988772 3333 568899999 99998887542 238999999999999996 999
Q ss_pred ceeCCeeeEEEeecCCCC
Q 039336 146 YVFKGKPMIIQFGRNPAA 163 (167)
Q Consensus 146 ~~l~gr~l~v~~a~~~~~ 163 (167)
..+.||.|+|+++.+...
T Consensus 71 ~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 71 KELLNRTITIALKSPSGP 88 (91)
T ss_dssp CEETTEEEEEEECCCSSC
T ss_pred eEeCCeEEEEEeCCCCcc
Confidence 999999999999988763
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3.8e-11 Score=82.65 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCC-HHHHHHHHHHhC--CceeC
Q 039336 74 GNPASVLYIKNLAKD-VIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPS-VELAHRALNLVN--GYVFK 149 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~-~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~-~~~A~~Al~~l~--g~~l~ 149 (167)
-.+++.|||+||++. ++.++|+.+|++ ||.|.+|.+. . ....|||.|.+ ..+|..|+..|+ |..|.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~-------~--g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFV-------R--GAKEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECC-------T--TCSEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEe-------c--CCCEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 457899999999999 999999999999 9999887643 1 22369999999 899999999995 77799
Q ss_pred CeeeEEEeecC
Q 039336 150 GKPMIIQFGRN 160 (167)
Q Consensus 150 gr~l~v~~a~~ 160 (167)
|..+.++....
T Consensus 85 g~~~~~evL~G 95 (121)
T 1owx_A 85 NKEVTWEVLEG 95 (121)
T ss_dssp SSSEEEEECCH
T ss_pred CcEEEEEECCC
Confidence 98888876543
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.19 E-value=6.3e-11 Score=89.29 Aligned_cols=81 Identities=19% Similarity=0.339 Sum_probs=64.6
Q ss_pred CEEEecCCC-----CCCCHHHHHHHHhhccCCeeeeeeeeeeee-cCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 78 SVLYIKNLA-----KDVIPDDFFFIFGSLFGSIDAAKCGLTVKL-MQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 78 ~~lfV~nLp-----~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~-~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
..+.+.|+- ..-.+++|+..|++ ||.|.++.++.+... ..+++++|++||+|.+.++|.+|+..|||..+.||
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 445555542 23456789999999 999999887533211 23569999999999999999999999999999999
Q ss_pred eeEEEeec
Q 039336 152 PMIIQFGR 159 (167)
Q Consensus 152 ~l~v~~a~ 159 (167)
.|.+.|+.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.1e-10 Score=76.42 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=59.4
Q ss_pred CCCCCEEEecCCCCC-----CCH----HHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 74 GNPASVLYIKNLAKD-----VIP----DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~-----~t~----~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
++|..||+|..++.. +-. .+|.+.|.+ ||.|..+++..+ -+||+|.+.++|.+||. |+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cC
Confidence 567889999988743 222 458899999 999988775422 29999999999999997 99
Q ss_pred CceeCCeeeEEEee
Q 039336 145 GYVFKGKPMIIQFG 158 (167)
Q Consensus 145 g~~l~gr~l~v~~a 158 (167)
|..++||.|+|++-
T Consensus 79 G~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 79 GMKVKGRAVKISGP 92 (95)
T ss_dssp GSEETTEEEEEECC
T ss_pred CeeeCCeEEEEecc
Confidence 99999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=8.8e-07 Score=59.26 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhcc-----CCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSLF-----GSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG 150 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~~-----G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g 150 (167)
..++|-+-|||..++...++.++.+ + |.+..+.+. -.-|-|+|+|.+...|-+|.-+|+|..|.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~---------pDH~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLV---------SDFNGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEE---------TTTTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEe---------cCCCceEEEEccchhhHHHHhhcCCeeecC
Confidence 3578999999999999999999999 9 888665432 135779999999999999998999999999
Q ss_pred eeeEEEe
Q 039336 151 KPMIIQF 157 (167)
Q Consensus 151 r~l~v~~ 157 (167)
|.|++.-
T Consensus 90 r~Lr~gT 96 (117)
T 2l9w_A 90 KVIRSGT 96 (117)
T ss_dssp EEEEEEC
T ss_pred eEEEecC
Confidence 9999864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=4.6e-05 Score=50.51 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=59.2
Q ss_pred CEEEecCCCCCC-CH----HHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 78 SVLYIKNLAKDV-IP----DDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 78 ~~lfV~nLp~~~-t~----~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
++|+|.||+..+ .. ..++.+|.. |+.+...... ++=.-..|.|.++++|.+|-..|+|..++|+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~l---------kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYF---------KSFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEE---------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeec---------CcceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 679999998765 32 567899999 9987553321 23345689999999999999999999999999
Q ss_pred eEEEeecCC
Q 039336 153 MIIQFGRNP 161 (167)
Q Consensus 153 l~v~~a~~~ 161 (167)
|+|-|+..-
T Consensus 76 ~r~YFgq~~ 84 (104)
T 1wey_A 76 MKLYFAQTL 84 (104)
T ss_dssp CEEECCCCS
T ss_pred eEEEecCCC
Confidence 999999744
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00044 Score=45.66 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=56.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHhhc----cCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 039336 76 PASVLYIKNLAKDVIPDDFFFIFGSL----FGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGK 151 (167)
Q Consensus 76 ~~~~lfV~nLp~~~t~~~L~~~F~~~----~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr 151 (167)
-+.+|.|.|||..+.++.|.-+|.+. -|.|..+.. ..+-|+|+|.+...|++.| .-..+.|+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~-----------~~~~AvItF~d~~va~rVL-~k~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR-----------LGCGGVLTFREPADAERVL-AQADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE-----------ETTEEEEEESSHHHHHHHH-TCSCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE-----------cCCcEEEEEcChHHHHHHh-cCCcceecCe
Confidence 45789999999999999999999872 356655441 1278999999999999988 4445778888
Q ss_pred eeEEEeecC
Q 039336 152 PMIIQFGRN 160 (167)
Q Consensus 152 ~l~v~~a~~ 160 (167)
+|.|...-.
T Consensus 75 ~LsV~P~~~ 83 (104)
T 2dhx_A 75 QLSLRPAPP 83 (104)
T ss_dssp BCEEEECCC
T ss_pred EEEEEcCCC
Confidence 888865443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.74 E-value=0.00039 Score=45.05 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=58.0
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecC--CCCcccEEEEEeCCHHHHHHHHHHhCCceeC---C--
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQ--EGRMRGQAFVTFPSVELAHRALNLVNGYVFK---G-- 150 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~--~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~---g-- 150 (167)
+.|.|++||+.+|++++.+.++. ...+...... .-.. ....-.-|||.|.+.+++....+.++|..+. |
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv---~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~ 77 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFF---SNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQE 77 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEE---ESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEe---CCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCE
Confidence 46889999999999999999998 7765433321 1011 1223467999999999999999999999973 2
Q ss_pred eeeEEEeecCC
Q 039336 151 KPMIIQFGRNP 161 (167)
Q Consensus 151 r~l~v~~a~~~ 161 (167)
.+-.|++|-.+
T Consensus 78 ~~a~VE~AP~q 88 (91)
T 1uw4_A 78 YPAIVEFAPFQ 88 (91)
T ss_dssp EECEEEECSSC
T ss_pred eeeEEEEcCCC
Confidence 23457777544
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.61 E-value=0.00028 Score=46.12 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=45.0
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
.+.++| +.|..+...||..+|+. ||.| .|+++ .-..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~-fggv-~I~Wi----------dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWI----------DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTT-TCSC-CCEEE----------ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhc-cCCE-EEEEE----------cCCeEEEEecCHHHHHHHHHhcc
Confidence 356777 99999999999999999 9965 33332 34689999999999999998763
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.003 Score=42.80 Aligned_cols=69 Identities=13% Similarity=0.196 Sum_probs=53.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eeeEE
Q 039336 77 ASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKG-KPMII 155 (167)
Q Consensus 77 ~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~g-r~l~v 155 (167)
.+.|.|-+.|+.. ...+...|++ ||.|.... . ....++-.|.|.+..+|++|| ..||..|.| -.|-|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~------~---~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHV------M---SNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGV 91 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEE------E---CSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHh-hCcEEEec------c---CCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEE
Confidence 3567888888774 6778889999 99995443 1 134689999999999999999 889999985 44555
Q ss_pred Ee
Q 039336 156 QF 157 (167)
Q Consensus 156 ~~ 157 (167)
..
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.00092 Score=43.79 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=44.4
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
+.++| +.|..+...||..+|+. ||.| .|+++ .-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fggv-~I~Wi----------dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWI----------DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SEEE-EEEEE----------ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cCCE-EEEEE----------cCCeEEEEecCHHHHHHHHHhcc
Confidence 45677 99999999999999999 9955 33332 34689999999999999998774
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.88 E-value=0.0057 Score=39.93 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=53.6
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeee-eeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---C--e
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCG-LTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFK---G--K 151 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~-~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~---g--r 151 (167)
-.|.||+||+.+|++++.+.++. .-.+...... -++. .....-.-|||.|.+.++...-.+.++|..+. | -
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~-~~~~d~~~fv~G~~s--~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRP-LPAHDYFEFFAADLS--LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSC-CSSEEECCCCCCCSS--SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCC-cCccceEEEeCCccC--CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 45899999999999998888776 4333221110 0000 01122357899999999999999999999973 2 2
Q ss_pred eeEEEeecC
Q 039336 152 PMIIQFGRN 160 (167)
Q Consensus 152 ~l~v~~a~~ 160 (167)
+-.|++|-.
T Consensus 87 ~a~VE~APy 95 (97)
T 2l08_A 87 PAVVEFAPF 95 (97)
T ss_dssp EEEEEECCC
T ss_pred eeEEEecCC
Confidence 345777753
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.84 E-value=0.0012 Score=46.24 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 039336 120 GRMRGQAFVTFPSVELAHRALNLVNGY 146 (167)
Q Consensus 120 g~~kg~aFV~f~~~~~A~~Al~~l~g~ 146 (167)
..++|||||+|.+.++|++|+..+++.
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 368999999999999999999888753
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.78 E-value=0.0057 Score=42.08 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=53.1
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeee-eeeeee---------ecCCC-CcccEEEEEeCCHHHHHHHHHHhCCc
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAK-CGLTVK---------LMQEG-RMRGQAFVTFPSVELAHRALNLVNGY 146 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~-~~~~i~---------~~~~g-~~kg~aFV~f~~~~~A~~Al~~l~g~ 146 (167)
+.|.|-+.|.. ....+...|++ ||.|.+-. ...... ....+ ...++-.|+|.++.+|.+|| ..||.
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred eEEEEEecCHH-HHHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 44667788754 45667788999 99985421 000000 00001 13578899999999999999 99999
Q ss_pred eeCCeeeEEEee
Q 039336 147 VFKGKPMIIQFG 158 (167)
Q Consensus 147 ~l~gr~l~v~~a 158 (167)
.|.|..|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999988877665
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.64 E-value=0.00078 Score=47.02 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=37.8
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeeeEEEeecC
Q 039336 119 EGRMRGQAFVTFPSVELAHRALNLV-NGYVFKGKPMIIQFGRN 160 (167)
Q Consensus 119 ~g~~kg~aFV~f~~~~~A~~Al~~l-~g~~l~gr~l~v~~a~~ 160 (167)
....+|+++|+|.+.++|++|+..+ ||..+.| .|.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4567999999999999999999999 9999999 999999875
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.97 E-value=0.0053 Score=50.93 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=37.8
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHH
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRAL 140 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al 140 (167)
++|||. .|..+++.+|.++|++ ||.|..+. + +.. ...||.|+|.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~--~---~~~---~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQ-FGPINNHF--F---YES---FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGG-GSCCCCEE--E---ECS---SSEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHh-cCCcceEE--E---Ecc---CCeEEEEEeCCHHHHHHHH
Confidence 679997 7999999999999999 99997764 1 222 2379999999999998765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.94 E-value=0.55 Score=39.31 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=43.7
Q ss_pred CEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 039336 78 SVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVN 144 (167)
Q Consensus 78 ~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~ 144 (167)
..++|+ +|..+...+|..+|+. ||.+ .+++ -....|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~-fg~v-~V~w----------iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSA-FGNI-QISW----------IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGG-GCCC-EEEE----------CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHh-cCCE-EEEE----------EcCCeEEEEECCHHHHHHHHHHHH
Confidence 456665 8889999999999999 9965 3332 145679999999999999999885
No 222
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=77.42 E-value=5.8 Score=25.72 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHRA 139 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~A 139 (167)
...+..+|+..+.++|+.-..+-++..++.. ..|++.|||.| |.+.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5678899999998877764444444444433 34677788854 7777777653
No 223
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=74.23 E-value=13 Score=24.08 Aligned_cols=51 Identities=8% Similarity=-0.010 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+..+|+..+.++|+.-..+-++..++.. ..|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678899999988877764444343444433 34677888854 777777764
No 224
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=73.42 E-value=7.7 Score=25.39 Aligned_cols=51 Identities=6% Similarity=-0.102 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+..+|++.+.+.|+.-..+-++..++.. ..|++.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4678899999888877764443333333332 34677888854 777777765
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=72.39 E-value=2.2 Score=25.64 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=43.0
Q ss_pred EEEecCC-CCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeeEEEe
Q 039336 79 VLYIKNL-AKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLVNGYVFKGKPMIIQF 157 (167)
Q Consensus 79 ~lfV~nL-p~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~l~v~~ 157 (167)
+|||..= -..+..-+|..++.. -+.+..-.+. .|.. .-.|.||+-.. ..|..++..|++..+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~-~~gi~~~~IG-~I~i-----~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAK-IDGVSADDIG-IITI-----MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHT-STTCCGGGEE-EEEE-----CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHH-ccCCChhhcc-EEEE-----eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 4666321 124677788888877 5555432211 1111 24588888865 457788899999999999999987
Q ss_pred ec
Q 039336 158 GR 159 (167)
Q Consensus 158 a~ 159 (167)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 226
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=68.07 E-value=16 Score=24.93 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+..+|++.+..+|+.-..+-++..+... ..|.+.|||.| |.+.+.|..
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4678899999998878864444444444433 34667777765 777777764
No 227
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=60.16 E-value=17 Score=25.24 Aligned_cols=51 Identities=8% Similarity=0.016 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+..+|++.+..+|+.-..+-++..+... ..|.+.|||.| |.+.+.|..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4678889999988877764343333333322 24667788865 777777764
No 228
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=58.96 E-value=6.8 Score=25.23 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHhhccCCeeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 87 KDVIPDDFFFIFGSLFGSIDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 87 ~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
...+..+|++.+.++|+.-..+-++..++.. ..|++.|||.| |.+.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3678889988888766653333332222221 24667777754 566665553
No 229
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.29 E-value=24 Score=25.08 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=32.5
Q ss_pred CEEEecCCCCC---------CCHHHHHHHH--hhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCH
Q 039336 78 SVLYIKNLAKD---------VIPDDFFFIF--GSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSV 133 (167)
Q Consensus 78 ~~lfV~nLp~~---------~t~~~L~~~F--~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~ 133 (167)
.++.|-|+|.. .+...|.+.| +. |.++. ++ ...... .+.|+|.|.|.+-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~-F~p~k-v~----~l~~~~-Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRG-FNPTR-VR----PLWNYL-GHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTT-CCCSE-EE----EEECSS-BEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcC-CCCce-eE----ecccCC-CCceeEEEEecCC
Confidence 35667788761 4457889877 88 98875 22 222333 4689999999874
No 230
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=43.69 E-value=4.9 Score=26.90 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=0.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 039336 123 RGQAFVTFPSVELAHRALNLVNGYVFKGKP 152 (167)
Q Consensus 123 kg~aFV~f~~~~~A~~Al~~l~g~~l~gr~ 152 (167)
.-++|++|.+...|..|+..++|....|+.
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~ 33 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG 33 (135)
T ss_dssp ------------------------------
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCC
Confidence 347899999999999999999987766644
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=40.57 E-value=25 Score=21.94 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=23.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCce
Q 039336 121 RMRGQAFVTFPSVELAHRALNLVNGYV 147 (167)
Q Consensus 121 ~~kg~aFV~f~~~~~A~~Al~~l~g~~ 147 (167)
..+||-||++...++...++....|..
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred ccCCEEEEEEecchhHHHHHHCCCCce
Confidence 389999999999999998988887765
No 232
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.83 E-value=24 Score=24.10 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHhhccCC-eeeeeeeeeeeec-CCCCcccEEEEEeCCHHHHHH
Q 039336 88 DVIPDDFFFIFGSLFGS-IDAAKCGLTVKLM-QEGRMRGQAFVTFPSVELAHR 138 (167)
Q Consensus 88 ~~t~~~L~~~F~~~~G~-i~~~~~~~~i~~~-~~g~~kg~aFV~f~~~~~A~~ 138 (167)
..+..+|++.+..+|+. -..+-++..+... ..|.+.|||.| |.+.+.|..
T Consensus 39 Tpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk 90 (138)
T 3iz6_U 39 NVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKK 90 (138)
T ss_dssp CCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 56788999999887776 3333233333222 34778888854 777777653
No 233
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=29.80 E-value=1.2e+02 Score=20.27 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=33.4
Q ss_pred ecCCCCCCCHHHHHHHHhhccC--Ceeeeee-------eeeeeecCCCCcccEEEEEeCC
Q 039336 82 IKNLAKDVIPDDFFFIFGSLFG--SIDAAKC-------GLTVKLMQEGRMRGQAFVTFPS 132 (167)
Q Consensus 82 V~nLp~~~t~~~L~~~F~~~~G--~i~~~~~-------~~~i~~~~~g~~kg~aFV~f~~ 132 (167)
+-++...+++++++..+.+..+ .|..+.+ ++.|........-+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 6667788999999999964244 3444443 2444444434557888888876
No 234
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=28.33 E-value=1.2e+02 Score=19.23 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=44.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHHhhccCCeeeeeeeeeeeecCCCCcccEEEEEeCCHHHHHHHHHHh
Q 039336 74 GNPASVLYIKNLAKDVIPDDFFFIFGSLFGSIDAAKCGLTVKLMQEGRMRGQAFVTFPSVELAHRALNLV 143 (167)
Q Consensus 74 ~~~~~~lfV~nLp~~~t~~~L~~~F~~~~G~i~~~~~~~~i~~~~~g~~kg~aFV~f~~~~~A~~Al~~l 143 (167)
...+|.+-|-|+|..+-..++.-.... .|---.|. ..-|.|.+.|.+.+....|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrh-lgyefycd-----------yidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRH-LGYEFYCD-----------YIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHT-TCCCEEEE-----------ECSSCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehh-cCeeEeee-----------eecCeeEEEecCChHHHHHHHHH
Confidence 346788889999999988887766656 67543333 13578999999999999999877
No 235
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.23 E-value=39 Score=20.00 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=10.1
Q ss_pred CcccEEEEEeCCH
Q 039336 121 RMRGQAFVTFPSV 133 (167)
Q Consensus 121 ~~kg~aFV~f~~~ 133 (167)
..++.+||.|.|.
T Consensus 35 ~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 35 SAREVCLVQFEDD 47 (68)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 3578999999873
No 236
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=26.04 E-value=57 Score=22.10 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCce
Q 039336 122 MRGQAFVTFPSVELAHRALNLVNGYV 147 (167)
Q Consensus 122 ~kg~aFV~f~~~~~A~~Al~~l~g~~ 147 (167)
.+||-||.+...++...++..+.|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 79999999999999888988888755
No 237
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=25.12 E-value=45 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=10.1
Q ss_pred CcccEEEEEeCCH
Q 039336 121 RMRGQAFVTFPSV 133 (167)
Q Consensus 121 ~~kg~aFV~f~~~ 133 (167)
..++.+||.|.|.
T Consensus 52 ~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 52 SAREVCLVQFEDD 64 (79)
T ss_dssp TTTTEEEEEETTS
T ss_pred cCCCEEEEEEcCC
Confidence 3578899999873
No 238
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.92 E-value=46 Score=19.69 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=9.9
Q ss_pred CcccEEEEEeCC
Q 039336 121 RMRGQAFVTFPS 132 (167)
Q Consensus 121 ~~kg~aFV~f~~ 132 (167)
..+|.|+|.|.+
T Consensus 39 ~~~gtC~V~F~D 50 (66)
T 2eqj_A 39 ILKQSCFIIFED 50 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred cCCcEEEEEEcc
Confidence 357999999987
No 239
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=24.44 E-value=57 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 039336 120 GRMRGQAFVTFPSVELAHRALNLVNGY 146 (167)
Q Consensus 120 g~~kg~aFV~f~~~~~A~~Al~~l~g~ 146 (167)
...+||-||+=.+..+...|+..+.+.
T Consensus 48 ~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 48 EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 357999999999999999988776544
No 240
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.14 E-value=18 Score=24.85 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=8.2
Q ss_pred cccEEEEEeC
Q 039336 122 MRGQAFVTFP 131 (167)
Q Consensus 122 ~kg~aFV~f~ 131 (167)
.+||+||...
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 5899999865
No 241
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.37 E-value=34 Score=19.95 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=10.1
Q ss_pred CcccEEEEEeCCH
Q 039336 121 RMRGQAFVTFPSV 133 (167)
Q Consensus 121 ~~kg~aFV~f~~~ 133 (167)
..++.|||.|.+.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 4578899999873
No 242
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=20.15 E-value=1.8e+02 Score=18.51 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=22.6
Q ss_pred ccEEEEEeCCHHHHHH---HHHHhCCceeCCeeeEEE
Q 039336 123 RGQAFVTFPSVELAHR---ALNLVNGYVFKGKPMIIQ 156 (167)
Q Consensus 123 kg~aFV~f~~~~~A~~---Al~~l~g~~l~gr~l~v~ 156 (167)
...-.|.|....+-++ |....+...+.|.+|+++
T Consensus 62 PRhIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 62 PRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred CCeEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 3456777777655444 444455677899999876
Done!