Your job contains 1 sequence.
>039337
MFQKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISR
DDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVL
WAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAET
EREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGL
QLSLEKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRS
IFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVT
IKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMS
GRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDS
SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDD
IYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALG
RYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAI
HREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVR
RSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRD
RPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGET
EDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTC
KIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYYHEERSSRQSEQEKARKEKELAKKH
FKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDII
EGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAE
VDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFE
DIDRLVAYFQRHIDDPQGDSAPSIRSVAAMVPMRSPANGGSTASAGSGWGGSTNEGGWNR
DRSSTPGSRTGRNDYRNGGGRDGHPSGLPRPYGGRGRGRGSNNSNRGNSSNSERQDSSYD
TPKWDSANKSGDDSWGNFPGAKAQNPAGREAFPGGWGSSGGGGSSGWGGASDGDNGGWGH
SSGGADKDSGWGGGGSKRSSDGGW
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039337
(1344 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206330 - symbol:GTB1 "global transcription fa... 4474 0. 2
TAIR|locus:2015198 - symbol:AT1G63210 species:3702 "Arabi... 3683 0. 2
UNIPROTKB|E2R4A3 - symbol:SUPT6H "Uncharacterized protein... 818 2.0e-121 4
UNIPROTKB|E1BEB8 - symbol:SUPT6H "Uncharacterized protein... 818 2.0e-121 4
UNIPROTKB|Q7KZ85 - symbol:SUPT6H "Transcription elongatio... 812 1.2e-120 4
UNIPROTKB|F1RNB0 - symbol:F1RNB0 "Uncharacterized protein... 811 1.7e-120 4
UNIPROTKB|F1LR36 - symbol:Supt6h "Protein Supt6h" species... 810 2.3e-120 4
UNIPROTKB|E1C1S5 - symbol:Gga.31080 "Uncharacterized prot... 821 6.0e-120 3
MGI|MGI:107726 - symbol:Supt6 "suppressor of Ty 6" specie... 813 7.8e-120 4
ZFIN|ZDB-GENE-030131-7949 - symbol:supt6h "suppressor of ... 797 8.4e-113 4
DICTYBASE|DDB_G0272354 - symbol:spt6 "SH2 domain-containi... 510 7.5e-104 4
FB|FBgn0028982 - symbol:Spt6 "Spt6" species:7227 "Drosoph... 703 2.0e-103 3
WB|WBGene00001259 - symbol:emb-5 species:6239 "Caenorhabd... 694 1.8e-93 2
POMBASE|SPAC1F7.01c - symbol:spt6 "nucleosome remodeling ... 628 1.3e-83 3
ASPGD|ASPL0000037137 - symbol:AN3423 species:162425 "Emer... 782 1.4e-74 1
UNIPROTKB|G4NEB7 - symbol:MGG_11491 "Transcription elonga... 717 2.3e-67 1
CGD|CAL0002923 - symbol:SPT6 species:5476 "Candida albica... 551 2.8e-64 3
UNIPROTKB|Q3MNT0 - symbol:SPT6 "Transcription elongation ... 551 2.8e-64 3
SGD|S000003348 - symbol:SPT6 "Nucleosome remodeling prote... 440 2.1e-53 4
UNIPROTKB|I3LVH3 - symbol:I3LVH3 "Uncharacterized protein... 537 1.3e-50 1
UNIPROTKB|Q74GL1 - symbol:tex "S1 RNA-binding domain-cont... 156 6.0e-14 4
TIGR_CMR|GSU_0235 - symbol:GSU_0235 "S1 RNA binding domai... 156 6.0e-14 4
UNIPROTKB|Q81VF3 - symbol:BA_0255 "S1 RNA binding domain ... 141 3.6e-12 3
TIGR_CMR|BA_0255 - symbol:BA_0255 "S1 RNA binding domain ... 141 3.6e-12 3
UNIPROTKB|Q88AQ9 - symbol:PSPTO_0327 "S1 RNA binding doma... 159 1.9e-10 5
UNIPROTKB|Q721R8 - symbol:LMOf2365_0917 "S1 RNA binding d... 150 4.4e-10 3
FB|FBgn0051156 - symbol:CG31156 species:7227 "Drosophila ... 176 3.4e-09 1
UNIPROTKB|Q5LKS3 - symbol:Q5LKS3 "S1 RNA binding domain p... 175 4.2e-09 4
TIGR_CMR|SPO_A0306 - symbol:SPO_A0306 "S1 RNA binding dom... 175 4.2e-09 4
UNIPROTKB|Q8E8N3 - symbol:tex "Transcriptional accessory ... 160 7.2e-08 4
TIGR_CMR|SO_4629 - symbol:SO_4629 "conserved hypothetical... 160 7.2e-08 4
TIGR_CMR|CPS_4965 - symbol:CPS_4965 "putative transcripti... 157 1.0e-07 4
UNIPROTKB|E1C8S3 - symbol:SRBD1 "Uncharacterized protein"... 104 7.5e-06 4
UNIPROTKB|Q60A39 - symbol:MCA1032 "S1 RNA binding domain ... 144 0.00015 3
UNIPROTKB|F1S5K6 - symbol:SRBD1 "Uncharacterized protein"... 113 0.00032 4
RGD|1562788 - symbol:Srbd1 "S1 RNA binding domain 1" spec... 111 0.00067 2
UNIPROTKB|J9P9N1 - symbol:SRBD1 "Uncharacterized protein"... 112 0.00087 4
>TAIR|locus:2206330 [details] [associations]
symbol:GTB1 "global transcription factor group B1"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0009630
"gravitropism" evidence=RCA] InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 PIRSF:PIRSF036947
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 EMBL:CP002684
GO:GO:0005829 GO:GO:0009506 GO:GO:0006139 GO:GO:0006357
GO:GO:0003746 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 EMBL:AC010795
GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 OMA:YRKFRKG IPI:IPI00846769
RefSeq:NP_176723.3 UniGene:At.20510 ProteinModelPortal:A8MS85
SMR:A8MS85 PaxDb:A8MS85 PRIDE:A8MS85 EnsemblPlants:AT1G65440.1
GeneID:842855 KEGG:ath:AT1G65440 TAIR:At1g65440
HOGENOM:HOG000241511 InParanoid:A8MS85 PhylomeDB:A8MS85
ProtClustDB:CLSN2682387 Genevestigator:A8MS85 Uniprot:A8MS85
Length = 1647
Score = 4474 (1580.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 883/1284 (68%), Positives = 1000/1284 (77%)
Query: 11 KALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLL 70
++ PP D SI +ES WIY QL S R + +G S+++DDI +FL+L
Sbjct: 280 ESTGSPPVDEISIEEESNWIYAQLASQL------RESDGTFDGRGFSVNKDDIAKFLELH 333
Query: 71 HLQKLDIPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTPTLKWHKVLWAIHDLDKKW 130
H+QKL+IPFIAMYRKE+C SLL + + P KWHKV W IHDLDKKW
Sbjct: 334 HVQKLEIPFIAMYRKEQCRSLL------DTGDFDGANQGKKPETKWHKVFWMIHDLDKKW 387
Query: 131 LLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLK 190
LLL+KRK AL YY KRYEEESRR+YDETRL LNQ LF+S+ KSL+ AETEREVDDVD K
Sbjct: 388 LLLRKRKMALHGYYTKRYEEESRRVYDETRLNLNQYLFESVIKSLKVAETEREVDDVDSK 447
Query: 191 FNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDE 250
FNLHFPPGE+GVDEGQYKRPKR ++YS CSKAGLWEVA+KFGY K+ DE
Sbjct: 448 FNLHFPPGEIGVDEGQYKRPKRKSQYSICSKAGLWEVANKFGYSAEQLGLALSLEKLVDE 507
Query: 251 LEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVST 310
LED KETPEEMA NF CAMF +S AVL+GARHMAAVEISCEP V+KYVR I+M+NAVVST
Sbjct: 508 LEDAKETPEEMAKNFVCAMFENSLAVLKGARHMAAVEISCEPSVKKYVRGIYMENAVVST 567
Query: 311 CPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNK 370
PT DG++ IDSFHQF+G+KWLREKPL KFE AQWLLIQK EEEKLLQVT KLPE+ +N+
Sbjct: 568 SPTADGNTVIDSFHQFSGIKWLREKPLSKFEGAQWLLIQKGEEEKLLQVTFKLPENYMNR 627
Query: 371 LFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLME 430
L SDC EHYLS GVSK AQLWN+QR+LIL+DAL FLLPSM KEARSL++ RAKS LL E
Sbjct: 628 LISDCNEHYLSVGVSKYAQLWNEQRKLILEDALHAFLLPSMEKEARSLLTSRAKSRLLSE 687
Query: 431 YGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVMLDSSGEVVDVLFT 490
YG+ALWNKVS GPYQ+K+ DI DEEAAPRV+ACCWGPGKP TFVMLDSSGEV+DVL+
Sbjct: 688 YGQALWNKVSAGPYQKKEMDINLDEEAAPRVMACCWGPGKPPNTFVMLDSSGEVLDVLYA 747
Query: 491 GCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVE 550
G LT RSQNV DQQ KK+DQ+R+LKFMMDHQPHVV LGAVNLSCT LKDDIYE+IF+MVE
Sbjct: 748 GSLTSRSQNVNDQQRKKSDQDRVLKFMMDHQPHVVALGAVNLSCTRLKDDIYEVIFQMVE 807
Query: 551 EHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMV 610
E PRDVGH MD+LSIVY DESLPRLYENSRIS +QLP Q GNV+RAVALGRYLQNPLAMV
Sbjct: 808 EKPRDVGHGMDDLSIVYVDESLPRLYENSRISGEQLPQQSGNVRRAVALGRYLQNPLAMV 867
Query: 611 ATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQ 670
ATLCGPGREILSWKL PLENFL DEKYGM+EQVMVD+TNQVG+DINLA +W F+PLQ
Sbjct: 868 ATLCGPGREILSWKLHPLENFLQLDEKYGMVEQVMVDITNQVGIDINLAASHDWFFSPLQ 927
Query: 671 FISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQ 730
FISGLGPRKAASLQRSLVRAG+IF RKD + HGLGKKVFVNA GFLR+RRSG AASSSQ
Sbjct: 928 FISGLGPRKAASLQRSLVRAGSIFVRKDLIM-HGLGKKVFVNAAGFLRIRRSGLAASSSQ 986
Query: 731 FIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLL 790
FIDLLDDTRIHPESY LAQELAK++Y+ D+ GD NDDEDA+EMAIEHVRDRP L+ +L
Sbjct: 987 FIDLLDDTRIHPESYSLAQELAKDIYDEDVRGDSNDDEDAIEMAIEHVRDRPASLRKVVL 1046
Query: 791 DRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVV 850
D ++ KKRENK+ET I REL GFQDWR +KEPS DEEFYMISGETEDT+AEGR+V
Sbjct: 1047 DEYLASKKRENKKETYSNIIRELSCGFQDWRIPFKEPSPDEEFYMISGETEDTIAEGRIV 1106
Query: 851 QATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDS-ELSDKLHEGDILTCKIKSIQKNR 909
QA+VRR+Q RAICVL+SGL GMLMKED+SDD RD +L+D+L EGDILTCKIKSIQK R
Sbjct: 1107 QASVRRLQNGRAICVLDSGLTGMLMKEDFSDDGRDIVDLADQLKEGDILTCKIKSIQKQR 1166
Query: 910 YQVFLVCRESEMRNNRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHP 969
YQVFL+C+ESEMRNNR+QH QN+D YYH HFK R+IVHP
Sbjct: 1167 YQVFLICKESEMRNNRHQHNQNVDAYYHEDRNSLQLVKEKARKEKELVRKHFKSRMIVHP 1226
Query: 970 CFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDI 1029
FQN+TAD+A + LS K+ GESI+RPSSRG ++LTLTLK+YDGVYAHK+I EGGK++KDI
Sbjct: 1227 RFQNITADQATEYLSDKDFGESIVRPSSRGLNFLTLTLKIYDGVYAHKEIAEGGKENKDI 1286
Query: 1030 KSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEK 1089
SL IGKTL IGEDTFEDLDEV+DRY+DPLVSHLK ML+YRKFRKG+K+EVD+LLRIEK
Sbjct: 1287 TSLQCIGKTLTIGEDTFEDLDEVMDRYVDPLVSHLKTMLNYRKFRKGTKSEVDDLLRIEK 1346
Query: 1090 AEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYF 1149
E P+RIVY FGISHEHPGTFIL+YIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYF
Sbjct: 1347 GENPSRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYF 1406
Query: 1150 QRHIDDPQGDSAPSIRSVAAMVPMRSPANXXXXXXXXXXXXXXXXXXXXXRDRSSTPGSX 1209
QRHIDDP +SAPSIRS+AA VPMRSPA+ DRS GS
Sbjct: 1407 QRHIDDPLQESAPSIRSIAAKVPMRSPADHGSSGGSGWGSSQSEGGWKGNSDRS---GSG 1463
Query: 1210 XXXXXXXXXXXXXXHPSGLPRPYXXXXXXXXXXXXXXXXXXXXERQDSSYDTPKWDSANK 1269
HPSG PRPY +RQD + D W + N
Sbjct: 1464 RGGEYRNGGGRDG-HPSGAPRPYGGRGRGRGRGRRDDMNS---DRQDGNGD---WGN-ND 1515
Query: 1270 SG--DDSWGNFPGAK-AQNPAGRE 1290
+G D WGN G AG++
Sbjct: 1516 TGTADGGWGNSGGGGWGSESAGKK 1539
Score = 42 (19.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 1264 WDSANKSGDDS-WGNFPGAKAQNPAG 1288
W S + G WGN G K + G
Sbjct: 1563 WGSGSGGGGSGGWGNDSGGKKSSEDG 1588
Score = 42 (19.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1264 WDSAN---KS-GDDSWGNFPGAKAQNPAG 1288
W S + KS G+ WGN P ++ + G
Sbjct: 1616 WGSESGGKKSDGEGGWGNEPSSRKSDGGG 1644
Score = 41 (19.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1266 SANKSGDDSWGNFPGAKAQNPAG 1288
S + G WGN G K + G
Sbjct: 1592 SGSGGGGSDWGNESGGKKSSADG 1614
Score = 39 (18.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 1257 SSYDTPKWDSANKSGDDSWGNFPGAKAQNPAGREAFP 1293
S + + + + K D G+ G + +N GR+ P
Sbjct: 1442 SGWGSSQSEGGWKGNSDRSGSGRGGEYRNGGGRDGHP 1478
Score = 37 (18.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 1270 SGDDSWGNFPGAKAQNPAG 1288
S D WG+ G K + G
Sbjct: 1611 SADGGWGSESGGKKSDGEG 1629
>TAIR|locus:2015198 [details] [associations]
symbol:AT1G63210 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0009790 "embryo development" evidence=IMP]
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006139
GO:GO:0006357 GO:GO:0009790 GO:GO:0003746 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:AC010795 GO:GO:0032784
Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 HOGENOM:HOG000241511 ProtClustDB:CLSN2682387
IPI:IPI00542270 RefSeq:NP_176510.1 UniGene:At.52337
ProteinModelPortal:Q9CAM1 SMR:Q9CAM1 PaxDb:Q9CAM1 PRIDE:Q9CAM1
EnsemblPlants:AT1G63210.1 GeneID:842626 KEGG:ath:AT1G63210
TAIR:At1g63210 InParanoid:Q9CAM1 OMA:ISECSEH PhylomeDB:Q9CAM1
Genevestigator:Q9CAM1 Uniprot:Q9CAM1
Length = 1197
Score = 3683 (1301.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 718/1109 (64%), Positives = 876/1109 (78%)
Query: 51 KEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFER 110
++G I++DDI++FL++ H+QKL+IPFIAMYRKE+C SLL D ++ ++
Sbjct: 109 EQGQGCLINKDDIVKFLEMFHVQKLEIPFIAMYRKEQCRSLL-DSSDDDHDGSDFNLDKK 167
Query: 111 TPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDS 170
T KWHKVLW I DLD+KW+LL+KRK+AL YY KR+EEE+ + D LN+ LF+S
Sbjct: 168 LET-KWHKVLWMIQDLDRKWVLLRKRKTALFGYYTKRFEEETC-MSD-----LNKSLFES 220
Query: 171 ISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASK 230
+ KSL+AAETEREVDDVD KFNLHFP E+ DEGQYKRP R ++YS CSK G+ E A+K
Sbjct: 221 VIKSLQAAETEREVDDVDSKFNLHFPHCEI--DEGQYKRPNRKSQYSICSKFGIKEFANK 278
Query: 231 FGYXXXXXXXXXXXXKMG-DELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEIS 289
FGY K+ DELED K+TPEEMA N++CAMF SQAVL+GARHMAAVEIS
Sbjct: 279 FGYSAEQLGLALSLEKVFVDELEDAKKTPEEMALNYECAMFGDSQAVLKGARHMAAVEIS 338
Query: 290 CEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQ 349
CEP +RKYVR IFM+NAVVST PTPDG+ IDSFH+F+ VKWL EKPLRKF+ QWLLIQ
Sbjct: 339 CEPSIRKYVRGIFMENAVVSTSPTPDGNVVIDSFHRFSAVKWLSEKPLRKFDGVQWLLIQ 398
Query: 350 KAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLP 409
KAEEEKLLQVT KLPE+ +N++ S+C EHYLS GVSK AQLWN+QR+LIL+DA+ F+LP
Sbjct: 399 KAEEEKLLQVTFKLPENQMNRIISECSEHYLSVGVSKYAQLWNEQRKLILEDAVHGFVLP 458
Query: 410 SMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPG 469
SM KEARSL++ RAK+ LL EYG+ LWNKVS GPY+R +N T +EEAAPRVLACCWGPG
Sbjct: 459 SMEKEARSLLTSRAKTQLLSEYGQVLWNKVSSGPYRRNNN--TSEEEAAPRVLACCWGPG 516
Query: 470 KPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGA 529
PETTFVMLDSSGE+VDVL++G + LRS++V DQ+ KK DQ+R LKF+ DHQP V+ L A
Sbjct: 517 NPETTFVMLDSSGELVDVLYSGSIGLRSRDVNDQKRKKMDQDRFLKFIRDHQPDVLALAA 576
Query: 530 VNLSCTSLKDDIYEIIFKMVEEHPRD-VGHEMDELSIVYGDESLPRLYENSRISSDQLPG 588
VNLSC LKD+IYE IF+MVEE P + V + + +VY DESLPRLYENSRISS+QLP
Sbjct: 577 VNLSCVRLKDEIYEAIFQMVEELPLNYVDDRIYDFPLVYADESLPRLYENSRISSEQLPQ 636
Query: 589 QKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDV 648
Q G VKRAV+LGRYLQNPLAM++TLCGPGR+ILSWKL ++FL PDEKY M+EQVMVD+
Sbjct: 637 QAGIVKRAVSLGRYLQNPLAMISTLCGPGRDILSWKLHSFQDFLDPDEKYEMVEQVMVDI 696
Query: 649 TNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKK 708
TNQVG+DINLA EW F+PLQF+SGLGPRKAASLQ+SLVRAG+IF RK+ + HG+GKK
Sbjct: 697 TNQVGIDINLAASHEWLFSPLQFVSGLGPRKAASLQKSLVRAGSIFVRKELIN-HGIGKK 755
Query: 709 VFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRD-IEGDLNDD 767
VFVNA GFLR+RRSG A SSSQFIDLLDDTRIHPESYGLAQELAK+VY D + GD +
Sbjct: 756 VFVNAAGFLRIRRSGLACSSSQFIDLLDDTRIHPESYGLAQELAKDVYAHDTVRGD---E 812
Query: 768 EDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEP 827
+DA+EMAIEHVRD P L+ +LD +++ K +ENK+ET LI REL GFQDWR+ +KE
Sbjct: 813 DDAIEMAIEHVRDEPASLRKIVLDEYLRSKNQENKKETYSLIMRELSCGFQDWRSLFKEV 872
Query: 828 SQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDS- 886
DEEFYMISGET++T+ EGR+VQATV++V +A CVL+ GL G+L+KEDYSDD RD
Sbjct: 873 DSDEEFYMISGETKETIGEGRIVQATVKKVTSGKAKCVLDCGLPGILLKEDYSDDGRDIV 932
Query: 887 ELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYYHXXXXXXXXX 946
+LS+KL EGDI+TCK+KSI K RY V LVC+ESEMR +R + ++D YYH
Sbjct: 933 DLSNKLCEGDIVTCKVKSILKQRYHVLLVCKESEMRKHR--NLGDVDDYYHEEKRNSVLI 990
Query: 947 XXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLT 1006
FK R+IVHP FQN+TA++A LS K GESI+RPSSRG ++LTL
Sbjct: 991 EKEKVPKEKK---QFKSRMIVHPRFQNITAEQATVYLSDKNIGESIVRPSSRGLNHLTLM 1047
Query: 1007 LKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKA 1066
+K+ D VYA+K+IIEG K++KDI SL IGKTLKIG +TFEDLDEV+DRY+DPLV+HL
Sbjct: 1048 IKISDNVYANKEIIEGEKENKDIVSLQRIGKTLKIGNETFEDLDEVMDRYVDPLVTHLMT 1107
Query: 1067 MLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIG 1126
ML++RKFR G+K+E+D+LLR+EK P +VY FG+SHEHPG+FIL+YIRS NPHHEYIG
Sbjct: 1108 MLNHRKFRTGTKSEIDDLLRVEKGVNPKMVVYSFGVSHEHPGSFILSYIRSANPHHEYIG 1167
Query: 1127 LYPKGFKFRKRMFEDIDRLVAYFQRHIDD 1155
LYPKGFKFRKRMF D+D+L AYF+RHID+
Sbjct: 1168 LYPKGFKFRKRMFGDLDKLAAYFKRHIDN 1196
Score = 298 (110.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 64/134 (47%), Positives = 87/134 (64%)
Query: 19 DGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIP 78
D SI +ES WIY +LL ++G I++DDI++FL++ H+QKL+IP
Sbjct: 91 DDMSIQEESNWIYARLLQ--------------EQGQGCLINKDDIVKFLEMFHVQKLEIP 136
Query: 79 FIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTPTLKWHKVLWAIHDLDKKWLLLQKRKS 138
FIAMYRKE+C SLL D ++ ++ T KWHKVLW I DLD+KW+LL+KRK+
Sbjct: 137 FIAMYRKEQCRSLL-DSSDDDHDGSDFNLDKKLET-KWHKVLWMIQDLDRKWVLLRKRKT 194
Query: 139 ALQSYYKKRYEEES 152
AL YY KR+EEE+
Sbjct: 195 ALFGYYTKRFEEET 208
>UNIPROTKB|E2R4A3 [details] [associations]
symbol:SUPT6H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 Pfam:PF00575
PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 Gene3D:3.30.505.10 GO:GO:0006139 GO:GO:0006357
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0032784
Gene3D:3.30.420.140 GeneTree:ENSGT00510000047446 KO:K11292
OMA:EADWIYR Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145 CTD:6830
EMBL:AAEX03006666 RefSeq:XP_537747.2 ProteinModelPortal:E2R4A3
Ensembl:ENSCAFT00000029797 GeneID:480627 KEGG:cfa:480627
NextBio:20855619 Uniprot:E2R4A3
Length = 1726
Score = 818 (293.0 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 216/705 (30%), Positives = 351/705 (49%)
Query: 198 GEVGVDEGQ----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELED 253
GE DE Q K+ R Y+ C AGL +A KFG E E
Sbjct: 502 GEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQ 561
Query: 254 PKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313
P E+A ++ C+ F + +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT
Sbjct: 562 FPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPT 621
Query: 314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN---- 369
G +D H K+L+ KP+++ D Q+L I AE+E LL + I + +
Sbjct: 622 KKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTIDISIDMKGVEGYGN 681
Query: 370 --KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWL 427
F + K+ Y D S Q WN QR + ++ AL FL M KE ++ + AK ++
Sbjct: 682 DQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYV 741
Query: 428 LMEYGKALWNKVSVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDS 480
+ + L+N + V PY+ +D+D + + RVL + + F +++
Sbjct: 742 IKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNG 801
Query: 481 SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLK 538
GEV D L T R R+++ +K Q E L KF+++ +PHVV + N L
Sbjct: 802 EGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLI 861
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVA 598
+D+ I+ H D G ++ + + D L LY NS+ S + +++AV+
Sbjct: 862 EDVKRIV------HELDQGQQLSSVGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
Query: 599 LGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINL 658
L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N
Sbjct: 916 LARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNR 975
Query: 659 AIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFL 717
AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 718 RVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIE 776
++ + S+ +I++LD +R+HPE+Y A+++A + D EDA A+E
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALE 1090
Query: 777 HVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEF 833
+ + P+ LK LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F
Sbjct: 1091 EILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIF 1150
Query: 834 YMISGETEDTLAEGRVVQATV-----RRVQGQ---RAICVLESGL 870
M++ ET +T G+++ V RR QG+ +AI E+GL
Sbjct: 1151 NMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGL 1195
Score = 409 (149.0 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 97/306 (31%), Positives = 158/306 (51%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+ G + + SD +++ G + C+I I ++ L CR S++ RN
Sbjct: 1232 LDNGVTGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRN 1290
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N+ +A K++
Sbjct: 1291 NEWKLPK--DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMM 1347
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV DG+Y H D+ E GK++ +G TL I
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA-----FSLGATLWINS 1402
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G + +++ELL K E PT I Y
Sbjct: 1403 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFI 1462
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
E PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1463 CACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI 1522
Query: 1161 APSIRS 1166
PS S
Sbjct: 1523 TPSSSS 1528
Score = 67 (28.6 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 19 DGESIVDESTWIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHL 72
+ + + +E+ WIY N + T+ L + RG + + I L +
Sbjct: 309 EDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPTSSFSRKGPSTIQKIKEALGFMRN 368
Query: 73 QKLDIPFIAMYRKE 86
Q ++PFIA YRKE
Sbjct: 369 QHFEVPFIAFYRKE 382
Score = 67 (28.6 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW + D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 393 LWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 447
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 448 MERLKDVQSMDELKDVYN-HF 467
Score = 52 (23.4 bits), Expect = 4.3e-117, Sum P(3) = 4.3e-117
Identities = 29/125 (23%), Positives = 50/125 (40%)
Query: 141 QSYYKKRYEEES--RRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPG 198
+ Y K+ +E+E+ I+ + Q+ ++ E E + E D+D F
Sbjct: 133 EEYGKEEHEKEAIAEEIFQDGEGEEGQEAVEAPMAPPEEEEEDDEESDID-DF------- 184
Query: 199 EVGVDEGQ-YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKET 257
+ D+GQ K+PK K + A L E FG + +ELE+ E
Sbjct: 185 -IVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYN-EYDEELEEEYEY 242
Query: 258 PEEMA 262
++ A
Sbjct: 243 EDDEA 247
Score = 43 (20.2 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 37/149 (24%), Positives = 65/149 (43%)
Query: 759 DIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLY-----LIRREL 813
+++G +NDD+D E + D D D K++KR + + L LI L
Sbjct: 53 NLKGFINDDDDEDEGEEDEGSDSGDSED----DVGHKKRKRTSFDDRLEDDDFDLIEENL 108
Query: 814 ---IHGFQDWRNQYK---EPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLE 867
+ Q +R K + DEE Y ++ +AE + Q +GQ A+ E
Sbjct: 109 GVKVKRGQKYRRVKKMSDDEDDDEEEYGKEEHEKEAIAE-EIFQDGEGE-EGQEAV---E 163
Query: 868 SGLAGMLMKEDYSDDWRDSELSDKLHEGD 896
+ +A +E+ DD +S++ D + + D
Sbjct: 164 APMAPP--EEEEEDD-EESDIDDFIVDDD 189
>UNIPROTKB|E1BEB8 [details] [associations]
symbol:SUPT6H "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 KO:K11292 OMA:EADWIYR
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 CTD:6830 EMBL:DAAA02048604
IPI:IPI00703031 RefSeq:NP_001180055.1 UniGene:Bt.8439
ProteinModelPortal:E1BEB8 PRIDE:E1BEB8 Ensembl:ENSBTAT00000011900
GeneID:538671 KEGG:bta:538671 NextBio:20877509 Uniprot:E1BEB8
Length = 1726
Score = 818 (293.0 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 216/705 (30%), Positives = 351/705 (49%)
Query: 198 GEVGVDEGQ----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELED 253
GE DE Q K+ R Y+ C AGL +A KFG E E
Sbjct: 502 GEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQ 561
Query: 254 PKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313
P E+A ++ C+ F + +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT
Sbjct: 562 FPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNISPT 621
Query: 314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN---- 369
G +D H K+L+ KP+++ D Q+L I AE+E LL + I + +
Sbjct: 622 KKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTIDISIDMKGVEGYGS 681
Query: 370 --KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWL 427
F + K+ Y D S Q WN QR + ++ AL FL M KE ++ + AK ++
Sbjct: 682 DQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYV 741
Query: 428 LMEYGKALWNKVSVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDS 480
+ + L+N + V PY+ +D+D + + RVL + + F +++
Sbjct: 742 IKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNG 801
Query: 481 SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLK 538
GEV D L T R R+++ +K Q E L KF+++ +PHVV + N L
Sbjct: 802 EGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLI 861
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVA 598
+D+ I+ H D G ++ + + D L LY NS+ S + +++AV+
Sbjct: 862 EDVKRIV------HELDQGQQLSSIGVELIDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
Query: 599 LGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINL 658
L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N
Sbjct: 916 LARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNR 975
Query: 659 AIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFL 717
AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 718 RVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIE 776
++ + S+ +I++LD +R+HPE+Y A+++A + D EDA A+E
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALE 1090
Query: 777 HVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEF 833
+ + P+ LK LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F
Sbjct: 1091 EILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIF 1150
Query: 834 YMISGETEDTLAEGRVVQATV-----RRVQGQ---RAICVLESGL 870
M++ ET +T G+++ V RR QG+ +AI E+GL
Sbjct: 1151 NMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGL 1195
Score = 409 (149.0 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 97/306 (31%), Positives = 158/306 (51%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+ G + + SD +++ G + C+I I ++ L CR S++ RN
Sbjct: 1232 LDNGVTGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRN 1290
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N+ +A K++
Sbjct: 1291 NEWKLPK--DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMM 1347
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV DG+Y H D+ E GK++ +G TL I
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA-----FSLGATLWINS 1402
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G + +++ELL K E PT I Y
Sbjct: 1403 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFI 1462
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
E PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1463 CACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPTVNGLFRWFKDHYQDPVPGI 1522
Query: 1161 APSIRS 1166
PS S
Sbjct: 1523 TPSSSS 1528
Score = 67 (28.6 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 19 DGESIVDESTWIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHL 72
+ + + +E+ WIY N + T+ L + RG + + I L +
Sbjct: 309 EDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPTSSFSRKGPSTIQKIKEALGFMRN 368
Query: 73 QKLDIPFIAMYRKE 86
Q ++PFIA YRKE
Sbjct: 369 QHFEVPFIAFYRKE 382
Score = 67 (28.6 bits), Expect = 2.0e-121, Sum P(4) = 2.0e-121
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW + D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 393 LWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 447
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 448 MERLKDVQSMDELKDVYN-HF 467
Score = 52 (23.4 bits), Expect = 4.3e-117, Sum P(3) = 4.3e-117
Identities = 29/125 (23%), Positives = 50/125 (40%)
Query: 141 QSYYKKRYEEES--RRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPG 198
+ Y K+ +E+E+ I+ + Q+ ++ E E + E D+D F
Sbjct: 133 EEYGKEEHEKEAIAEEIFQDGEGEEGQEAVEAHMAPPEEEEEDDEESDID-DF------- 184
Query: 199 EVGVDEGQ-YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKET 257
+ D+GQ K+PK K + A L E FG + +ELE+ E
Sbjct: 185 -IVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYN-EYDEELEEEYEY 242
Query: 258 PEEMA 262
++ A
Sbjct: 243 EDDEA 247
Score = 41 (19.5 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
Identities = 33/146 (22%), Positives = 64/146 (43%)
Query: 759 DIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRET--LYLIRREL--- 813
+++G +NDD+D E + D D + + + K +++ E LI L
Sbjct: 53 NLKGFINDDDDEEEGEEDEGSDSGDS-EDEVSHKKRKRTSFDDRLEDDDFDLIEENLGVK 111
Query: 814 IHGFQDWRNQYK---EPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGL 870
+ Q +R K + +EE Y ++ +AE + Q +GQ A+ E+ +
Sbjct: 112 VKRGQKYRRVKKVSDDEDDEEEEYGKEEHEKEAIAE-EIFQDGEGE-EGQEAV---EAHM 166
Query: 871 AGMLMKEDYSDDWRDSELSDKLHEGD 896
A +E+ DD +S++ D + + D
Sbjct: 167 APP--EEEEEDD-EESDIDDFIVDDD 189
>UNIPROTKB|Q7KZ85 [details] [associations]
symbol:SUPT6H "Transcription elongation factor SPT6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 GO:GO:0005634
GO:GO:0019048 Gene3D:3.30.505.10 GO:GO:0003700 GO:GO:0006357
GO:GO:0006351 GO:GO:0003723 GO:GO:0006338 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH471159
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
eggNOG:COG2183 KO:K11292 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 CTD:6830 HOVERGEN:HBG093994 EMBL:U38623
EMBL:U38658 EMBL:U46691 EMBL:D79984 EMBL:BC003692 EMBL:BC003696
EMBL:BC017105 EMBL:BC033074 EMBL:BC073963 EMBL:BC136522
EMBL:BC136524 EMBL:BC150268 EMBL:AF070532 IPI:IPI00430770
IPI:IPI00456683 IPI:IPI00784161 RefSeq:NP_003161.2
UniGene:Hs.250429 ProteinModelPortal:Q7KZ85 SMR:Q7KZ85
DIP:DIP-42615N IntAct:Q7KZ85 MINT:MINT-1491202 STRING:Q7KZ85
PhosphoSite:Q7KZ85 DMDM:51701986 PaxDb:Q7KZ85 PeptideAtlas:Q7KZ85
PRIDE:Q7KZ85 Ensembl:ENST00000314616 Ensembl:ENST00000347486
GeneID:6830 KEGG:hsa:6830 UCSC:uc002hby.3 GeneCards:GC17P026989
HGNC:HGNC:11470 HPA:CAB012416 MIM:601333 neXtProt:NX_Q7KZ85
PharmGKB:PA36256 InParanoid:Q7KZ85 ChiTaRS:SUPT6H GenomeRNAi:6830
NextBio:26667 PMAP-CutDB:Q7KZ85 Bgee:Q7KZ85 Genevestigator:Q7KZ85
GermOnline:ENSG00000109111 Uniprot:Q7KZ85
Length = 1726
Score = 812 (290.9 bits), Expect = 1.2e-120, Sum P(4) = 1.2e-120
Identities = 215/705 (30%), Positives = 350/705 (49%)
Query: 198 GEVGVDEGQ----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELED 253
G+ DE Q K+ R Y+ C AGL +A KFG E E
Sbjct: 502 GDEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQ 561
Query: 254 PKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313
P E+A ++ C+ F + +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT
Sbjct: 562 FPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPT 621
Query: 314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN---- 369
G +D H K+L+ KP+++ D Q+L I AE+E LL I + +
Sbjct: 622 KKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTTDISIDLKGVEGYGN 681
Query: 370 --KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWL 427
F + K+ Y D S Q WN QR + ++ AL FL M KE ++ + AK ++
Sbjct: 682 DQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYV 741
Query: 428 LMEYGKALWNKVSVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDS 480
+ + L+N + V PY+ +D+D + + RVL + + F +++
Sbjct: 742 IKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNG 801
Query: 481 SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLK 538
GEV D L T R R+++ +K Q E L KF+++ +PHVV + N L
Sbjct: 802 EGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLI 861
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVA 598
+D+ I+ H D G ++ + + D L LY NS+ S + +++AV+
Sbjct: 862 EDVKRIV------HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
Query: 599 LGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINL 658
L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N
Sbjct: 916 LARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNR 975
Query: 659 AIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFL 717
AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 718 RVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIE 776
++ + S+ +I++LD +R+HPE+Y A+++A + D EDA A+E
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALE 1090
Query: 777 HVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEF 833
+ + P+ LK LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F
Sbjct: 1091 EILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIF 1150
Query: 834 YMISGETEDTLAEGRVVQATV-----RRVQGQ---RAICVLESGL 870
M++ ET +T G+++ V RR QG+ +AI E+GL
Sbjct: 1151 NMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGL 1195
Score = 409 (149.0 bits), Expect = 1.2e-120, Sum P(4) = 1.2e-120
Identities = 97/306 (31%), Positives = 158/306 (51%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+ G + + SD +++ G + C+I I ++ L CR S++ RN
Sbjct: 1232 LDNGVTGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRN 1290
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N+ +A K++
Sbjct: 1291 NEWKLPK--DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMM 1347
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV DG+Y H D+ E GK++ +G TL I
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA-----FSLGATLWINS 1402
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G + +++ELL K E PT I Y
Sbjct: 1403 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFI 1462
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
E PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1463 CACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI 1522
Query: 1161 APSIRS 1166
PS S
Sbjct: 1523 TPSSSS 1528
Score = 67 (28.6 bits), Expect = 1.2e-120, Sum P(4) = 1.2e-120
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 19 DGESIVDESTWIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHL 72
+ + + +E+ WIY N + T+ L + RG + + I L +
Sbjct: 309 EDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIKEALGFMRN 368
Query: 73 QKLDIPFIAMYRKE 86
Q ++PFIA YRKE
Sbjct: 369 QHFEVPFIAFYRKE 382
Score = 67 (28.6 bits), Expect = 1.2e-120, Sum P(4) = 1.2e-120
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW + D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 393 LWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 447
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 448 MERLKDVQSMDELKDVYN-HF 467
Score = 53 (23.7 bits), Expect = 1.9e-116, Sum P(3) = 1.9e-116
Identities = 29/125 (23%), Positives = 50/125 (40%)
Query: 141 QSYYKKRYEEES--RRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPG 198
+ Y K+ +E+E+ I+ + Q+ ++ E E + E D+D F
Sbjct: 133 EEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESDID-DF------- 184
Query: 199 EVGVDEGQ-YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKET 257
+ D+GQ K+PK K + A L E FG + +ELE+ E
Sbjct: 185 -IVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYN-EYDEELEEEYEY 242
Query: 258 PEEMA 262
++ A
Sbjct: 243 EDDEA 247
Score = 42 (19.8 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 37/149 (24%), Positives = 65/149 (43%)
Query: 759 DIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLY-----LIRREL 813
+++G +NDD+D E + D D D K++KR + + L LI L
Sbjct: 53 NLKGFINDDDDEDEGEEDEGSDSGDSED----DVGHKKRKRTSFDDRLEDDDFDLIEENL 108
Query: 814 ---IHGFQDWRNQYK---EPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLE 867
+ Q +R K + DEE Y ++ +AE + Q +GQ A +E
Sbjct: 109 GVKVKRGQKYRRVKKMSDDEDDDEEEYGKEEHEKEAIAE-EIFQDGEGE-EGQEA---ME 163
Query: 868 SGLAGMLMKEDYSDDWRDSELSDKLHEGD 896
+ +A +E+ DD +S++ D + + D
Sbjct: 164 APMAPP--EEEEEDD-EESDIDDFIVDDD 189
>UNIPROTKB|F1RNB0 [details] [associations]
symbol:F1RNB0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 EMBL:FP312642 EMBL:FP016171
Ensembl:ENSSSCT00000019345 Uniprot:F1RNB0
Length = 1725
Score = 811 (290.5 bits), Expect = 1.7e-120, Sum P(4) = 1.7e-120
Identities = 216/705 (30%), Positives = 351/705 (49%)
Query: 198 GEVGVDEGQ----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELED 253
GE DE Q K+ R Y+ C AGL +A KFG E E
Sbjct: 502 GEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQ 561
Query: 254 PKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313
P E+A ++ C+ F + +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT
Sbjct: 562 FPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPT 621
Query: 314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN---- 369
G +D H K+L+ KP+++ D Q+L I AE+E LL + I + +
Sbjct: 622 KKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTIDISIDMKGVEGYGN 681
Query: 370 --KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWL 427
F + K+ Y D S Q WN QR + ++ AL FL M KE ++ + AK ++
Sbjct: 682 DQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYV 741
Query: 428 LMEYGKALWNKVSVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDS 480
+ + L+N + V PY+ +D+D + + RVL + + F +++
Sbjct: 742 IKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNG 801
Query: 481 SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLK 538
GEV D L T R R+++ +K Q E L KF+++ +PHVV + N L
Sbjct: 802 EGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLI 861
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVA 598
+D+ I+ H D G ++ + + D L LY NS+ S + +++AV+
Sbjct: 862 EDVKRIV------HELDQGQQLSSIGVELIDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
Query: 599 LGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINL 658
L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N
Sbjct: 916 LARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNR 975
Query: 659 AIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFL 717
AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 718 RVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIE 776
++ + S+ +I++LD +R+HPE+Y A+++A + D EDA A+E
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALE 1090
Query: 777 HVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEF 833
+ + P+ LK LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F
Sbjct: 1091 EILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKD-RTAYRSPNTEEIF 1149
Query: 834 YMISGETEDTLAEGRVVQATV-----RRVQGQ---RAICVLESGL 870
M++ ET +T G+++ V RR QG+ +AI E+GL
Sbjct: 1150 NMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGL 1194
Score = 409 (149.0 bits), Expect = 1.7e-120, Sum P(4) = 1.7e-120
Identities = 97/306 (31%), Positives = 158/306 (51%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+ G + + SD +++ G + C+I I ++ L CR S++ RN
Sbjct: 1231 LDNGVTGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRN 1289
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N+ +A K++
Sbjct: 1290 NEWKLPK--DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMM 1346
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV DG+Y H D+ E GK++ +G TL I
Sbjct: 1347 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA-----FSLGATLWINS 1401
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G + +++ELL K E PT I Y
Sbjct: 1402 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFI 1461
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
E PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1462 CACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI 1521
Query: 1161 APSIRS 1166
PS S
Sbjct: 1522 TPSSSS 1527
Score = 67 (28.6 bits), Expect = 1.7e-120, Sum P(4) = 1.7e-120
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 19 DGESIVDESTWIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHL 72
+ + + +E+ WIY N + T+ L + RG + + I L +
Sbjct: 309 EDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPTSSFSRKGPSTIQKIKEALGFMRN 368
Query: 73 QKLDIPFIAMYRKE 86
Q ++PFIA YRKE
Sbjct: 369 QHFEVPFIAFYRKE 382
Score = 67 (28.6 bits), Expect = 1.7e-120, Sum P(4) = 1.7e-120
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW + D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 393 LWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 447
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 448 MERLKDVQSMDELKDVYN-HF 467
Score = 53 (23.7 bits), Expect = 2.5e-116, Sum P(3) = 2.5e-116
Identities = 29/125 (23%), Positives = 50/125 (40%)
Query: 141 QSYYKKRYEEES--RRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPG 198
+ Y K+ +E+E+ I+ + Q+ ++ E E + E D+D F
Sbjct: 133 EEYGKEEHEKEAIAEEIFQDGEGEEGQEAIEAPMAPPEEEEEDDEESDID-DF------- 184
Query: 199 EVGVDEGQ-YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKET 257
+ D+GQ K+PK K + A L E FG + +ELE+ E
Sbjct: 185 -IVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYN-EYDEELEEEYEY 242
Query: 258 PEEMA 262
++ A
Sbjct: 243 EDDEA 247
Score = 44 (20.5 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 38/149 (25%), Positives = 65/149 (43%)
Query: 759 DIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLY-----LIRREL 813
+++G +NDD+D E + D D D K++KR + + L LI L
Sbjct: 53 NLKGFINDDDDEDEGEEDEGSDSGDSED----DVGHKKRKRTSFDDRLEDDDFDLIEENL 108
Query: 814 ---IHGFQDWRNQYK---EPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLE 867
+ Q +R K + DEE Y ++ +AE + Q +GQ AI E
Sbjct: 109 GVKVKRGQKYRRVKKMSDDEDDDEEEYGKEEHEKEAIAE-EIFQDGEGE-EGQEAI---E 163
Query: 868 SGLAGMLMKEDYSDDWRDSELSDKLHEGD 896
+ +A +E+ DD +S++ D + + D
Sbjct: 164 APMAPP--EEEEEDD-EESDIDDFIVDDD 189
>UNIPROTKB|F1LR36 [details] [associations]
symbol:Supt6h "Protein Supt6h" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 IPI:IPI00364864 PRIDE:F1LR36
Ensembl:ENSRNOT00000016759 RGD:1309290 ArrayExpress:F1LR36
Uniprot:F1LR36
Length = 1726
Score = 810 (290.2 bits), Expect = 2.3e-120, Sum P(4) = 2.3e-120
Identities = 215/705 (30%), Positives = 350/705 (49%)
Query: 198 GEVGVDEGQ----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELED 253
GE DE Q K+ R Y+ C AGL +A KFG E E
Sbjct: 502 GEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQ 561
Query: 254 PKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313
P E+A ++ C+ F + +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT
Sbjct: 562 FPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPT 621
Query: 314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN---- 369
G +D H K+L+ KP+++ D Q+L I AE+E LL + I + +
Sbjct: 622 KKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKIGLAEDEGLLTIDISIDMKGVEGYGN 681
Query: 370 --KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWL 427
F + K+ Y D S Q WN QR + ++ AL FL M KE ++ + A+ +
Sbjct: 682 DQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEARESV 741
Query: 428 LMEYGKALWNKVSVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDS 480
+ + L+N + V PY+ +D+D + + RVL + + F +++
Sbjct: 742 VKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNG 801
Query: 481 SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLK 538
GEV D L T R R+++ +K Q E L KF+++ +PHVV + N L
Sbjct: 802 EGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLVNKKPHVVTVAGENRDAQMLI 861
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVA 598
+D+ I+ H D G ++ + + D L LY NS+ S + +++AV+
Sbjct: 862 EDVKRIV------HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
Query: 599 LGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINL 658
L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N
Sbjct: 916 LARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNR 975
Query: 659 AIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFL 717
AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 718 RVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIE 776
++ + S+ +I++LD +R+HPE+Y A+++A + D EDA A+E
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALE 1090
Query: 777 HVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEF 833
+ + P+ LK LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F
Sbjct: 1091 EILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIF 1150
Query: 834 YMISGETEDTLAEGRVVQATV-----RRVQGQ---RAICVLESGL 870
M++ ET +T G+++ V RR QG+ +AI E+GL
Sbjct: 1151 NMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGL 1195
Score = 409 (149.0 bits), Expect = 2.3e-120, Sum P(4) = 2.3e-120
Identities = 97/306 (31%), Positives = 158/306 (51%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+ G + + SD +++ G + C+I I ++ L CR S++ RN
Sbjct: 1232 LDNGVTGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRN 1290
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N+ +A K++
Sbjct: 1291 NEWKLPK--DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMM 1347
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV DG+Y H D+ E GK++ +G TL I
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENA-----FSLGATLWINS 1402
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G + +++ELL K E PT I Y
Sbjct: 1403 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFI 1462
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
E PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1463 CACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI 1522
Query: 1161 APSIRS 1166
PS S
Sbjct: 1523 TPSSSS 1528
Score = 67 (28.6 bits), Expect = 2.3e-120, Sum P(4) = 2.3e-120
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 19 DGESIVDESTWIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHL 72
+ + + +E+ WIY N + T+ L + RG + + I L +
Sbjct: 309 EDDELEEEADWIYRNAFATPTISLQDSCDYLDRGQPTSSFSRKGPSTVQKIKEALGFMRN 368
Query: 73 QKLDIPFIAMYRKE 86
Q ++PFIA YRKE
Sbjct: 369 QHFEVPFIAFYRKE 382
Score = 67 (28.6 bits), Expect = 2.3e-120, Sum P(4) = 2.3e-120
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW + D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 393 LWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 447
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 448 MERLKDVQSMDELKDVYN-HF 467
Score = 48 (22.0 bits), Expect = 1.2e-115, Sum P(3) = 1.2e-115
Identities = 28/125 (22%), Positives = 50/125 (40%)
Query: 141 QSYYKKRYEEES--RRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPG 198
+ Y K+ +E+E+ I+ + Q+ ++ + E + E D+D F
Sbjct: 133 EEYGKEEHEKEAIAGEIFQDEEGEEGQEAVEAPMAPPDEEEEDDEESDID-DF------- 184
Query: 199 EVGVDEGQ-YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKET 257
+ D+GQ K+PK K + A L E FG + +ELE+ E
Sbjct: 185 -IVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYN-EYDEELEEDYEY 242
Query: 258 PEEMA 262
++ A
Sbjct: 243 EDDEA 247
>UNIPROTKB|E1C1S5 [details] [associations]
symbol:Gga.31080 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
ester bonds" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 Gene3D:3.30.505.10
GO:GO:0006139 GO:GO:0006357 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
GeneTree:ENSGT00510000047446 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 EMBL:AADN02025866 EMBL:AADN02025867
IPI:IPI00583816 Ensembl:ENSGALT00000000200 Uniprot:E1C1S5
Length = 1659
Score = 821 (294.1 bits), Expect = 6.0e-120, Sum P(3) = 6.0e-120
Identities = 212/693 (30%), Positives = 347/693 (50%)
Query: 206 QYKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEMASNF 265
+ K+ R Y+ C AGL +A KFG E E P E+A ++
Sbjct: 447 ELKQASRRDMYTICQTAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDY 506
Query: 266 KCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQ 325
C+ F S +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT G ID H
Sbjct: 507 VCSQFPSPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKINISPTKKGKKDIDEAHY 566
Query: 326 FAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN------KLFSDCKEHY 379
K+L+ KP+++ D Q+L + AEEE LL + I + + F + K+ Y
Sbjct: 567 AYSFKYLKNKPVKELRDDQFLKMSLAEEEALLTIDISIDMKGVEGYGSDQTYFEEIKQFY 626
Query: 380 LSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKV 439
D S Q WN QR + ++ +L+ FL M KE ++ + AK ++L + L+N +
Sbjct: 627 YRDEFSHQVQEWNRQRTMAIERSLNQFLYVQMAKELKNKLLVEAKEYVLKACSRKLYNWL 686
Query: 440 SVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDSSGEVVDVLFTGC 492
V Y+ +D+D + + RVL + + F +++ GEV D L
Sbjct: 687 KVASYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPH 746
Query: 493 LTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVE 550
T R R+++ +K Q E L KF+++ +PHVV + N L +D+ I+
Sbjct: 747 FTKRRNAWREEEREKKAQDIETLKKFLLNKKPHVVTIAGENRDAQMLMEDVKRIV----- 801
Query: 551 EHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMV 610
H D G ++ + + D L LY NS+ S ++ +++AV+L R +Q+PL
Sbjct: 802 -HELDQGQQLSSIGVELVDNELAILYMNSKKSENEFRDYPPLLRQAVSLARRIQDPLIEF 860
Query: 611 ATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQ 670
A +C +IL KL PL+ + ++ + ++ N+VG+D+N AI A LQ
Sbjct: 861 AQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDVNRAIAHPHSQALLQ 920
Query: 671 FISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSS 729
++ GLGPRK L + L + + R VT +G KVF+N GF+++ + S+
Sbjct: 921 YVCGLGPRKGTHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTASLGDSTD 980
Query: 730 QFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIEHVRDRPDLLKTY 788
+I++LD +R+HPE+Y A+++A + D EDA A+E + + P+ LK
Sbjct: 981 SYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALEEILENPERLKDL 1035
Query: 789 LLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLA 845
LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F M++ ET +T
Sbjct: 1036 DLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTPYRSPNTEEVFNMLTKETPETFY 1095
Query: 846 EGRVVQATV-----RRVQGQ---RAICVLESGL 870
G+++ V RR QG+ +AI E+GL
Sbjct: 1096 IGKMIICNVTGIAHRRPQGESYDQAIRNDETGL 1128
Score = 414 (150.8 bits), Expect = 6.0e-120, Sum P(3) = 6.0e-120
Identities = 97/306 (31%), Positives = 160/306 (52%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+AG + + SD +++ G + C+I I ++ L CR S++ +N
Sbjct: 1165 LDNGVAGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDKN 1223
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N++ +A K++
Sbjct: 1224 NEWKLPK--DTYYDFDTEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNISFKQAEKMM 1280
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV DG+Y H D+ E GK++ +G TL I
Sbjct: 1281 ETMDQGDVIIRPSSKGENHLTVTWKVNDGIYQHVDVREEGKENA-----FSLGSTLWINT 1335
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G K +++ELL K E PT I Y
Sbjct: 1336 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCNGGDKKKLEELLIKTKKEKPTFIPYFI 1395
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
+ PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1396 SACKDLPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQVFPTVNGLFRWFKDHYQDPVPGI 1455
Query: 1161 APSIRS 1166
PS S
Sbjct: 1456 TPSSSS 1461
Score = 69 (29.3 bits), Expect = 6.0e-120, Sum P(3) = 6.0e-120
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW++ D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 325 LWSVWQWDEKWTQLKIRKQNLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 379
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 380 MERLKDVQSMDELKDVYN-HF 399
Score = 52 (23.4 bits), Expect = 6.3e-34, Sum P(2) = 6.3e-34
Identities = 29/130 (22%), Positives = 56/130 (43%)
Query: 729 SQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTY 788
S F++ + E Y E+ V + +E D DDE+ E ++ +D LK +
Sbjct: 2 SDFVE--SEAEESEEEYNQDGEVVPRVTKKFVEED-EDDEEEEEENLDD-QDEQGNLKGF 57
Query: 789 LLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGR 848
+ D +E++ E + ++ H + R + + +D++F +I E+ L
Sbjct: 58 INDDDDEEEEEEEEASDSGDSEDDVGHKKRK-RIAFDDRLEDDDFDLI----EENLGVKV 112
Query: 849 VVQATVRRVQ 858
Q RRV+
Sbjct: 113 KRQQKFRRVR 122
Score = 45 (20.9 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 30/147 (20%), Positives = 63/147 (42%)
Query: 759 DIEGDLNDDEDALEMAIEHVRDRPDL--------LKTYLLDRHIKEKKRENKRETLYL-I 809
+++G +NDD+D E E D D K D +++ + E L + +
Sbjct: 53 NLKGFINDDDDEEEEEEEEASDSGDSEDDVGHKKRKRIAFDDRLEDDDFDLIEENLGVKV 112
Query: 810 RRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESG 869
+R+ F+ R + +EE Y ++ +AE + Q +G+ +E+
Sbjct: 113 KRQ--QKFRRVRKMSDDEDDEEEDYGKEEHEKEAIAE-EIFQDG----EGEEGGEAVEAP 165
Query: 870 LAGMLMKEDYSDDWRDSELSDKLHEGD 896
+A +E+ +D +S++ D + + D
Sbjct: 166 VAPPEEEEEEEED--ESDIDDFIVDDD 190
Score = 43 (20.2 bits), Expect = 3.3e-117, Sum P(3) = 3.3e-117
Identities = 22/76 (28%), Positives = 28/76 (36%)
Query: 203 DEGQ-YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEM 261
D+GQ K+PK K + A L E FG DE E E EEM
Sbjct: 189 DDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDY-----------DEFEKYNEYDEEM 237
Query: 262 ASNFKCAMFNSSQAVL 277
++ + AVL
Sbjct: 238 EEEYEYEDEEAEGAVL 253
>MGI|MGI:107726 [details] [associations]
symbol:Supt6 "suppressor of Ty 6" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] Pfam:PF00017
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 SMART:SM00732 MGI:MGI:107726
GO:GO:0005634 Gene3D:3.30.505.10 GO:GO:0006357 GO:GO:0006351
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 GO:GO:0032784
EMBL:AL591070 Gene3D:3.30.420.140 UniGene:Mm.20755 eggNOG:COG2183
GeneTree:ENSGT00510000047446 HOGENOM:HOG000001562 KO:K11292
OMA:EADWIYR Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
HOVERGEN:HBG093994 OrthoDB:EOG44F687 ChiTaRS:SUPT6H EMBL:U40375
EMBL:BC072657 EMBL:AK129069 EMBL:AK046156 IPI:IPI00454050
PIR:T30810 RefSeq:NP_033323.2 ProteinModelPortal:Q62383 SMR:Q62383
IntAct:Q62383 STRING:Q62383 PhosphoSite:Q62383 PaxDb:Q62383
PRIDE:Q62383 Ensembl:ENSMUST00000002121 GeneID:20926 KEGG:mmu:20926
UCSC:uc007kip.2 CTD:20926 InParanoid:Q62383 NextBio:299837
Bgee:Q62383 CleanEx:MM_SUPT6H Genevestigator:Q62383
GermOnline:ENSMUSG00000002052 Uniprot:Q62383
Length = 1726
Score = 813 (291.2 bits), Expect = 7.8e-120, Sum P(4) = 7.8e-120
Identities = 215/705 (30%), Positives = 350/705 (49%)
Query: 198 GEVGVDEGQ----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELED 253
GE DE Q K+ R Y+ C AGL +A KFG E E
Sbjct: 502 GEEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQ 561
Query: 254 PKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313
P E+A ++ C+ F + +AVL+GAR+M A++I+ EP VR+ +R F + A ++ PT
Sbjct: 562 FPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPT 621
Query: 314 PDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN---- 369
G +D H K+L+ KP+++ D Q+L I AE+E LL + I + +
Sbjct: 622 KKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKIGLAEDEGLLTIDISIDMKGVEGYGN 681
Query: 370 --KLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWL 427
F + K+ Y D S Q WN QR + ++ AL FL M KE ++ + A+ +
Sbjct: 682 DQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEARESV 741
Query: 428 LMEYGKALWNKVSVGPYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTF-VMLDS 480
+ + L+N + V PY+ +D+D + + RVL + + F +++
Sbjct: 742 VKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNG 801
Query: 481 SGEVVDVLFTGCLTLRSQNVRDQQSKKNDQ--ERLLKFMMDHQPHVVVLGAVNLSCTSLK 538
GEV D L T R R+++ +K Q E L KF+++ +PHVV + N L
Sbjct: 802 EGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLVNKKPHVVTIAGENRDAQMLT 861
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVA 598
+D+ I+ H D G ++ + + D L LY NS+ S + +++AV+
Sbjct: 862 EDVKRIV------HELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVS 915
Query: 599 LGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINL 658
L R +Q+PL A +C +IL K PL+ + +E + ++ N+VG+D+N
Sbjct: 916 LARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNR 975
Query: 659 AIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFL 717
AI + A +Q++ GLGPRK L + L + + +R VT +G KVF+N GFL
Sbjct: 976 AIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFL 1035
Query: 718 RVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIE 776
++ + S+ +I++LD +R+HPE+Y A+++A + D EDA A+E
Sbjct: 1036 KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALE 1090
Query: 777 HVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEF 833
+ + P+ LK LD +E +R+ +K TLY IR EL ++D R Y+ P+ +E F
Sbjct: 1091 EILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIF 1150
Query: 834 YMISGETEDTLAEGRVVQATV-----RRVQGQ---RAICVLESGL 870
M++ ET +T G+++ V RR QG+ +AI E+GL
Sbjct: 1151 NMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGL 1195
Score = 400 (145.9 bits), Expect = 7.8e-120, Sum P(4) = 7.8e-120
Identities = 95/303 (31%), Positives = 156/303 (51%)
Query: 866 LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RN 923
L++G+ G + + SD +++ G + C+I I ++ L CR S++ RN
Sbjct: 1232 LDNGVTGFIPTKFLSDKVVKRP-EERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRN 1290
Query: 924 NRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLL 983
N ++ + D YY + K R+I HP F N+ +A K++
Sbjct: 1291 NEWKLPK--DTYYDFDAEAADHKQEEDMKRKQQRTTYIK-RVIAHPSFHNINFKQAEKMM 1347
Query: 984 SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043
+ G+ IIRPSS+G ++LT+T KV G+Y H D+ E GK++ +G TL I
Sbjct: 1348 ETMDQGDVIIRPSSKGENHLTVTWKVSAGIYQHVDVREEGKENA-----FSLGATLWINS 1402
Query: 1044 DTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGF 1100
+ FEDLDE+V RY+ P+ S + +L+++ ++ G + +++ELL K E PT I Y
Sbjct: 1403 EEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFI 1462
Query: 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQGDS 1160
E PG F+L Y P EY+ + P+GF++R ++F ++ L +F+ H DP
Sbjct: 1463 CACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGI 1522
Query: 1161 APS 1163
PS
Sbjct: 1523 TPS 1525
Score = 67 (28.6 bits), Expect = 7.8e-120, Sum P(4) = 7.8e-120
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 19 DGESIVDESTWIY-NQLLSGTLPL-----FGQRGAGSPKEGHDLSISRDDIMRFLDLLHL 72
+ + + +E+ WIY N + T+ L + RG + + I L +
Sbjct: 309 EDDELEEEADWIYRNAFATPTISLQDSCDYLDRGQPTSSFSRKGPSTVQKIKEALGFMRN 368
Query: 73 QKLDIPFIAMYRKE 86
Q ++PFIA YRKE
Sbjct: 369 QHFEVPFIAFYRKE 382
Score = 67 (28.6 bits), Expect = 7.8e-120, Sum P(4) = 7.8e-120
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW + D+KW L+ RK L ++K + Y++ ++ L D I ++L+ +
Sbjct: 393 LWRVWQWDEKWTQLRIRKENLTRLFEKMQAYQ----YEQISADPDKPLADGI-RALDTTD 447
Query: 180 TER--EVDDVD-LK--FNLHF 195
ER +V +D LK +N HF
Sbjct: 448 MERLKDVQSMDELKDVYN-HF 467
Score = 47 (21.6 bits), Expect = 5.4e-115, Sum P(3) = 5.4e-115
Identities = 23/95 (24%), Positives = 40/95 (42%)
Query: 141 QSYYKKRYEEES--RRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPG 198
+ Y K+ +E+E+ I+ + Q+ ++ + E + E D+D F
Sbjct: 133 EEYGKEEHEKEAIAGEIFQDEEGEEGQEAVEAPMAPPDEEEEDDEESDID-DF------- 184
Query: 199 EVGVDEGQ-YKRPKRSTKYSSCSKAGLWEVASKFG 232
+ D+GQ K+PK K + A L E FG
Sbjct: 185 -IVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFG 218
>ZFIN|ZDB-GENE-030131-7949 [details] [associations]
symbol:supt6h "suppressor of Ty 6 homolog"
species:7955 "Danio rerio" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0071599 "otic vesicle development" evidence=IMP] [GO:0035050
"embryonic heart tube development" evidence=IMP] [GO:0001756
"somitogenesis" evidence=IMP] [GO:0007507 "heart development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 Pfam:PF00575
PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 ZFIN:ZDB-GENE-030131-7949 GO:GO:0005634 GO:GO:0006357
GO:GO:0006351 GO:GO:0003723 GO:GO:0001756 GO:GO:0016788
GO:GO:0071599 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0035050 GO:GO:0032784
Gene3D:3.30.420.140 eggNOG:COG2183 GeneTree:ENSGT00510000047446
HOGENOM:HOG000001562 KO:K11292 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 EMBL:AF421378 EMBL:BC063248 EMBL:BC097046
IPI:IPI00504681 RefSeq:NP_660094.1 UniGene:Dr.81053
ProteinModelPortal:Q8UVK2 STRING:Q8UVK2 Ensembl:ENSDART00000028007
GeneID:337866 KEGG:dre:337866 CTD:6830 HOVERGEN:HBG093994
InParanoid:Q8UVK2 OrthoDB:EOG44F687 NextBio:20812449 Bgee:Q8UVK2
InterPro:IPR018974 Pfam:PF09371 Uniprot:Q8UVK2
Length = 1726
Score = 797 (285.6 bits), Expect = 8.4e-113, Sum P(4) = 8.4e-113
Identities = 215/690 (31%), Positives = 344/690 (49%)
Query: 208 KRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEMASNFKC 267
K+ R YS C AGL +A KFG E E P E+A ++ C
Sbjct: 508 KQASRRDMYSICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVC 567
Query: 268 AMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFA 327
+ FN+ +AVL+GAR+M A++I+ EP VR +R F + A ++ PT G +D H
Sbjct: 568 SQFNTPEAVLEGARYMVAMQIAREPLVRHVLRQTFQERAKINIKPTKKGKKDVDEAHFAY 627
Query: 328 GVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLN-----KLFSDCKEHYLSD 382
K+L+ KP+++ Q+L + AEEE LL + I + + F + K+ Y D
Sbjct: 628 SFKYLKNKPVKELSGDQFLKMCLAEEEGLLAIDICIDLVGVKGYGDQTYFDEIKQFYYRD 687
Query: 383 GVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVG 442
S Q WN QR L ++ +L FL P M KE ++ + AK ++ K L+N + V
Sbjct: 688 EFSHQVQEWNKQRTLAIERSLQQFLYPQMAKELKNKLIAEAKDNIVKSCCKKLYNWLKVA 747
Query: 443 PYQ-----RKDNDITPDEEAAP-RVLACCWGPGKPETTFV-MLDSSGEVVDVLFTGCLTL 495
PY+ +D+D+ + + RVL + G+ F +++ GEVVD L
Sbjct: 748 PYRPDQQVEEDDDLMDESQGKGIRVLGVAFASGRDTPVFCSLINGEGEVVDFLRLPYFLK 807
Query: 496 RSQNVR-DQQSKKN-DQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHP 553
R R D++ KK D E L KF++ +PHVV + N + +DI I ++ +
Sbjct: 808 RRNAWREDEREKKQQDVENLKKFLLSKKPHVVAVSGENRDAHMVMEDIKRTISELEQNSS 867
Query: 554 RDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATL 613
V + + D L LY NS+ S +++AV++ R +Q+PL A +
Sbjct: 868 LPV------VGVELVDNELAVLYMNSKKSEADFRDYPPLLRQAVSVARKIQDPLVEFAQV 921
Query: 614 CGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFIS 673
C +IL KL PL+ + +E + ++ N+VG+D+N AI + + +Q+I
Sbjct: 922 CSTDDDILCLKLHPLQEHVVKEELLSALYCEFINRVNEVGVDVNRAIAHPYTQSLVQYIC 981
Query: 674 GLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFI 732
GLGPRK + L + L + + R VT +G KVF+N GF+++ + S+ +I
Sbjct: 982 GLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTASLGDSTDSYI 1041
Query: 733 DLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEM-AIEHVRDRPDLLKTYLLD 791
++LD +R+HPE+Y A+++A + D EDA A+E + + P+ LK LD
Sbjct: 1042 EVLDGSRVHPETYEWARKMAVDALEYD-----ESAEDANPAGALEEILENPERLKDLDLD 1096
Query: 792 RHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGR 848
+E +R+ NK TLY IR EL ++D R Y+ P+ +E F M++ ET +T G+
Sbjct: 1097 AFAEELERQGYGNKGITLYDIRAELSCRYKDLRAPYRPPNTEEVFNMLTKETPETFYIGK 1156
Query: 849 VVQATV-----RRVQGQ---RAICVLESGL 870
++ V RR QG+ +AI E+GL
Sbjct: 1157 LITCVVTNIAHRRPQGESYDQAIRNDETGL 1186
Score = 401 (146.2 bits), Expect = 8.4e-113, Sum P(4) = 8.4e-113
Identities = 92/295 (31%), Positives = 153/295 (51%)
Query: 890 DKLHEGDILTCKIKSIQKNRYQVFLVCRESEM--RNNRYQHCQNLDPYYHXXXXXXXXXX 947
+++ G + C+I I ++ V L CR S++ +NN ++ + D YY
Sbjct: 1246 ERVKPGMTVHCRIMKIDIEKFNVDLTCRTSDLSDKNNEWKLPK--DTYYDFDAETDDVKQ 1303
Query: 948 XXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTL 1007
+ K R+I HP F N+ +A K++ + + G+ +IRPSS+G ++LT+T
Sbjct: 1304 EEEQKKKQQRTTYIK-RVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTW 1362
Query: 1008 KVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAM 1067
KV DG+Y H D+ E GK++ +G TL I + FEDLDE+ RY+ P+ + + +
Sbjct: 1363 KVADGIYQHVDVREEGKENA-----FSLGHTLWINTEEFEDLDEITARYVQPMAAFARDL 1417
Query: 1068 LSYRKFRK---GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEY 1124
L ++ F + G + +++ELL K E PT I Y + PG F+L Y P EY
Sbjct: 1418 LGHKYFHECNGGDRKKMEELLVRTKKEKPTFIPYYISACRDLPGKFLLGYQPRGKPRIEY 1477
Query: 1125 IGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDP-QGDSAPSIRSVAAMVPMRSPAN 1178
+ + P GF++R ++F ++ L +F+ H DP G + S R+ +PAN
Sbjct: 1478 VTITPDGFRYRSQIFPTVNGLFRWFKDHYQDPVPGVTPASSRTRTPASVNATPAN 1532
Score = 247 (92.0 bits), Expect = 5.9e-53, Sum P(2) = 5.9e-53
Identities = 94/376 (25%), Positives = 158/376 (42%)
Query: 11 KALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDD------IM 64
+A+ P + + + +E+ WIY S T + Q G + SR I
Sbjct: 290 RAIPVKPAEDDELEEEAEWIYRNAFS-TPTISMQESTDYLDRGTTTNFSRKGPSTIAKIK 348
Query: 65 RFLDLLHLQKLDIPFIAMYRKE--ECLSLLKDL----EQNEVXXXXXXX-------FERT 111
L+ + Q ++PFIA YRKE E + DL + +E F+R
Sbjct: 349 EALNFMRNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLTRLFQRM 408
Query: 112 PTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYE--EESRRIYDETRLALNQQLFD 169
+ ++ ++ D DK + K + +E +Y+ L + +
Sbjct: 409 QSYQFEQIS---ADPDKPLADSTRPLDTADMERLKDVQSIDELGDVYNHFLLYYGRDIPK 465
Query: 170 SISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQ----YKRPKRSTKYSSCSKAGLW 225
+ + + +++ +V + E +E Q K+ R YS C AGL
Sbjct: 466 MQNAAKGGKKKLKKIKEVSEEDGEEAEVEEEEEEEEQKGPDLKQASRRDMYSICQSAGLD 525
Query: 226 EVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAA 285
+A KFG E E P E+A ++ C+ FN+ +AVL+GAR+M A
Sbjct: 526 GLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFNTPEAVLEGARYMVA 585
Query: 286 VEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQW 345
++I+ EP VR +R F + A ++ PT G +D H K+L+ KP+++ Q+
Sbjct: 586 MQIAREPLVRHVLRQTFQERAKINIKPTKKGKKDVDEAHFAYSFKYLKNKPVKELSGDQF 645
Query: 346 LLIQKAEEEKLLQVTI 361
L + AEEE LL + I
Sbjct: 646 LKMCLAEEEGLLAIDI 661
Score = 54 (24.1 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 719 VRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNR----DIEGDLNDDEDAL 771
VR + S ++D DD + E+ G+ + K+ Y+R D EGD +D++D +
Sbjct: 82 VRHRRRKRSFDDYLDD-DDLDLIEENLGVKVKRRKKKYSRVKTMDDEGDDDDEKDLI 137
Score = 46 (21.3 bits), Expect = 8.4e-113, Sum P(4) = 8.4e-113
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 203 DEGQYKRPKRSTKYSSCSKAGLWEVASKFG 232
D+GQ K+ K+S + A L E FG
Sbjct: 184 DDGQPITKKKGKKFSGYTDAALQEAQEIFG 213
Score = 43 (20.2 bits), Expect = 1.1e-112, Sum P(3) = 1.1e-112
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 156 YDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTK 215
Y + L Q++F + AE + E D H E D+ + RPK+ TK
Sbjct: 200 YTDAALQEAQEIFGG---DFDFAEFDTEAYD-------HAEEEEEDQDDESWDRPKKQTK 249
Query: 216 YSSCSKAGLWEV 227
S+ ++E+
Sbjct: 250 -RRVSRRSIFEI 260
Score = 40 (19.1 bits), Expect = 8.4e-113, Sum P(4) = 8.4e-113
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 176 EAAETEREVDDVDLK 190
EA E+E E ++ DLK
Sbjct: 8 EAEESEEEFEEKDLK 22
>DICTYBASE|DDB_G0272354 [details] [associations]
symbol:spt6 "SH2 domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=ISS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006334 "nucleosome assembly"
evidence=ISS] [GO:0006325 "chromatin organization" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR000959
InterPro:IPR000980 InterPro:IPR003029 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50078
PROSITE:PS50126 SMART:SM00252 dictyBase:DDB_G0272354 GO:GO:0006355
GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0006352 GO:GO:0006357
GO:GO:0003723 EMBL:AAFI02000008 GO:GO:0016788 GO:GO:0006368
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006334
GO:GO:0008023 InterPro:IPR022967 SMART:SM00316 GO:GO:0032784
Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292 OMA:EADWIYR
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 RefSeq:XP_645136.1
ProteinModelPortal:Q55A48 EnsemblProtists:DDB0231554 GeneID:8618306
KEGG:ddi:DDB_G0272354 InParanoid:Q55A48 ProtClustDB:CLSZ2729239
Uniprot:Q55A48
Length = 1754
Score = 510 (184.6 bits), Expect = 7.5e-104, Sum P(4) = 7.5e-104
Identities = 138/481 (28%), Positives = 236/481 (49%)
Query: 448 DNDITPDEEAAP---RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLR-SQNVRDQ 503
D ++ D + P ++L+ CWG K T +L+S GEV+ + + R ++++++
Sbjct: 772 DEEVDYDRDGNPIPFKILSLCWGSDKIPTMGAVLNSDGEVLSHIKLDFICDRLGESLKEK 831
Query: 504 QSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDEL 563
+ K D +RL + ++QP +V++ A + L +++ + + + R + + L
Sbjct: 832 KEK--DIKRLEEICQEYQPRLVLVSATEMDSKRLYEEVKDHLQRWSNGERRIIRKSV--L 887
Query: 564 SIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSW 623
Y E L +SR+ ++ ++ +A+GR +P+ A+LC EIL
Sbjct: 888 LNYYSPEIGLSLQTSSRLQ-EEFKEYPPILRHTIAVGRCALDPITEYASLCNDHNEILFL 946
Query: 624 KLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASL 683
KL PL++ + D ++ + ++V N VG+DIN I + A LQF+SGLG RKA L
Sbjct: 947 KLHPLQDMIGKDYLVKLLHRCFINVVNAVGVDINRMIQCRFTSATLQFVSGLGSRKAQML 1006
Query: 684 QRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPE 743
SL R G T + + ++ N +GF+++R A + DLLDDTRIHP
Sbjct: 1007 LNSLFRRGGFVTSRQSLEKVLSQDVIYRNCIGFIQIRERHAADYKA---DLLDDTRIHPT 1063
Query: 744 SYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRH---IKEKKRE 800
SY + +A E ++++ DE IE + RP L LD I+ +
Sbjct: 1064 SYPITYRIAAEALDKNL------DERNFHSYIEDIIKRPKKLDRLDLDGFADIIESHEDR 1117
Query: 801 NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQ 860
R+ LY I++EL + F D R+ Y+EPS D F ++GET +L G +V T R
Sbjct: 1118 PARKLLYFIKKELTNPFADIRHPYEEPSADTIFEWLTGETNQSLRRGTLVTVTTIRTFDN 1177
Query: 861 RAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESE 920
C L++GL G + + SD+ L G + C++ + K ++ V L C+ S+
Sbjct: 1178 SVKCRLDNGLEGSIPTDCISDNGETKSLG----RGVTINCRVMGVDKYQFTVSLSCKPSD 1233
Query: 921 M 921
+
Sbjct: 1234 L 1234
Score = 365 (133.5 bits), Expect = 7.5e-104, Sum P(4) = 7.5e-104
Identities = 106/342 (30%), Positives = 164/342 (47%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYE-EESRRIYDETRL--ALNQ-----QLFDSI 171
LW I DLD+KW ++ K L+ + E + + E+R +++ Q+ + I
Sbjct: 396 LWNIFDLDEKWAHMKVNKRNLEQIGSNNQQLEPYKSVLLESRSEESISDLYDLFQMINGI 455
Query: 172 SKSLEAAETEREV----DDVDLKFNLHFPPGEVGVDEGQYKRPKRSTK---YSSCSKAGL 224
K+ + D D K G G R K++ K Y+ +KAGL
Sbjct: 456 QKNTNLLNGSSSLGSGGDGYDDKEG--GSSATQGNTVGGLSRQKKAIKRDLYTIYTKAGL 513
Query: 225 WEVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMA 284
+ FG ++ D P MA C ++ VLQ R+M
Sbjct: 514 SKFLPNFGMTAQEFGQNLMDNYTTNKPRDQMAEPSTMALVHICLEADNKDRVLQATRYMM 573
Query: 285 AVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQ 344
A EI +P VR VR I+ A ++T PT G ID FH + VK ++EKP FED+Q
Sbjct: 574 AQEIGYDPHVRYSVRMIYRKYAHITTTPTLKGFKEIDVFHPYFTVKSIQEKPAHLFEDSQ 633
Query: 345 WLLIQKAEEEKLLQVTIKLPEDSLNK-LFSDCKEHYLSDGVSKSAQLWNDQRELILKDAL 403
+LLI KAE+E ++ T+ + E + N + + + YLSDG S Q WN+QR+LI+++AL
Sbjct: 634 YLLILKAEKEGFIKSTMAITEKTHNSVIIPEMESLYLSDGTSAITQQWNEQRKLIIREAL 693
Query: 404 DNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQ 445
+ FL P + KE R+ + A + + E K L +K+ V P++
Sbjct: 694 NKFLYPVLEKELRNKLLTEASNRVAFECAKKLEDKIRVAPWR 735
Score = 310 (114.2 bits), Expect = 7.5e-104, Sum P(4) = 7.5e-104
Identities = 64/191 (33%), Positives = 112/191 (58%)
Query: 963 ERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEG 1022
+R +VHP + + + EA LS K G+ ++RPSS+G ++T T K D ++ H DI E
Sbjct: 1279 KRTVVHPLWHDFSCLEAETYLSDKPIGDVLLRPSSKGHDHITATFKFADSIFLHHDIKEA 1338
Query: 1023 GKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRK-FRKGSKAEV 1081
K + V +GK+ +G+ ++ LDE++ R+++ L+++L + S ++ G++++V
Sbjct: 1339 DKPNA-----VSLGKSFYMGDVKYDSLDEILARHVEYLINNLNEVKSNTAHWKDGNRSDV 1393
Query: 1082 DELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFED 1141
D+L+R EK + P I Y FG EHPG L ++ S P HE + + GF RK+++
Sbjct: 1394 DDLIREEKKKNPKTIPYYFGYDFEHPGFLTLYHVPSNTPRHEPVLVKADGFILRKKLYPT 1453
Query: 1142 IDRLVAYFQRH 1152
L+ YF+R+
Sbjct: 1454 YYELIKYFKRN 1464
Score = 56 (24.8 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 31/129 (24%), Positives = 58/129 (44%)
Query: 757 NRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIR-RELIH 815
+ DI+GD + D+ + E + + + +R K ++ KRE L R ++L
Sbjct: 128 DEDIDGDEDGDDGSDGSESESESEEDEEVAQARRERRRKRREERRKREKGGLQRLKKLRA 187
Query: 816 GFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQG--QRAICVLESGLAGM 873
+D + KE ++ + +GE ED +G VV + + V+ +R ES
Sbjct: 188 SNKDLSD--KEDDVEDGY---NGEQED---DGFVVDSHGKPVKRSHERERMSYESSNRSR 239
Query: 874 LMKEDYSDD 882
+M + + DD
Sbjct: 240 IMSDIFDDD 248
Score = 46 (21.3 bits), Expect = 7.5e-104, Sum P(4) = 7.5e-104
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 63 IMRFLDLLHLQKLDIPFIAMYRKE 86
I + L + L+IPFI Y K+
Sbjct: 362 IFKILQFIQRDLLEIPFIYTYEKD 385
>FB|FBgn0028982 [details] [associations]
symbol:Spt6 "Spt6" species:7227 "Drosophila melanogaster"
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEP] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IDA] [GO:0008023
"transcription elongation factor complex" evidence=IPI] [GO:0035101
"FACT complex" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IMP] [GO:0002805 "regulation
of antimicrobial peptide biosynthetic process" evidence=IMP]
[GO:0035363 "histone locus body" evidence=IDA] InterPro:IPR000980
InterPro:IPR003029 InterPro:IPR006641 InterPro:IPR017072
Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126
SMART:SM00252 SMART:SM00732 EMBL:AE014298 GO:GO:0003682
GO:GO:0003723 GO:GO:0006366 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0035327 GO:GO:0002805
GO:GO:0032968 GO:GO:0008023 GO:GO:0005703 GO:GO:0005705
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
GeneTree:ENSGT00510000047446 KO:K11292 OMA:EADWIYR
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 EMBL:AF104400 EMBL:AF104401
EMBL:AY052030 RefSeq:NP_651962.2 UniGene:Dm.7373
ProteinModelPortal:Q9W420 SMR:Q9W420 STRING:Q9W420 PaxDb:Q9W420
PRIDE:Q9W420 EnsemblMetazoa:FBtr0070896 GeneID:44000
KEGG:dme:Dmel_CG12225 CTD:44000 FlyBase:FBgn0028982
InParanoid:Q9W420 OrthoDB:EOG4PRR5K PhylomeDB:Q9W420
GenomeRNAi:44000 NextBio:836551 Bgee:Q9W420 GermOnline:CG12225
GO:GO:0035363 Uniprot:Q9W420
Length = 1831
Score = 703 (252.5 bits), Expect = 2.0e-103, Sum P(3) = 2.0e-103
Identities = 240/897 (26%), Positives = 415/897 (46%)
Query: 3 QKECRSLRKALAGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDD 62
++E R+ + PPT I +I NQ L F ++ P +L+I DD
Sbjct: 329 EQEKPESREKMRKPPTTVNKIKQTLEFIRNQQLEVPFIAFYRKEYVKP----ELNI--DD 382
Query: 63 IMR--FLDLLHLQ------KLDIPFIAMYRKEECLSLLKDLEQ---NEVXXXXXXXFERT 111
+ + + D + Q KL + F M R+ + +L D +Q ++V FER
Sbjct: 383 LWKVYYYDGIWCQLNERKRKLKVLFEKM-RQFQLDTLCADTDQPVPDDVRLILDSDFERL 441
Query: 112 PTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSI 171
++ + L +H +LL + ++R + RR R A + D
Sbjct: 442 ADVQSMEELKDVH---MYFLLNYSHELPRMQAEQRRKAIQERREAKARRQAAAAENGDDA 498
Query: 172 SKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGLWEVASKF 231
++++ E E + DD +L +D Q K+ S+ Y+ KAG+ A F
Sbjct: 499 AEAIVVPEPEDD-DDPEL------------IDY-QLKQASNSSPYAVFRKAGICGFAKHF 544
Query: 232 GYXXXXXXXXXXXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCE 291
G +E+ P E+A + F ++ V+ A+++ A +++ E
Sbjct: 545 GLTPEQYAENLRDNYQRNEITQESIGPTELAKQYLSPRFMTTDEVIHAAKYVVARQLAQE 604
Query: 292 PCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKA 351
P +RK +R ++ D A ++ PT +G ID +K++ +KP+ Q++ + A
Sbjct: 605 PLLRKTMREVYFDRARINIRPTKNGMVLIDENSPVYSMKYVAKKPVSDLFGDQFIKLMMA 664
Query: 352 EEEKLLQVTIKLPEDSLNKLFS--------DCKEHYLSDGVSKSAQLWNDQRELILKDAL 403
EEEKLL++T L E N + + K Y D +K Q WN R ++ AL
Sbjct: 665 EEEKLLEITF-LEEFEGNACANGTPGDYVEESKALYQLDQFAKHVQEWNKLRAECVQLAL 723
Query: 404 DNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPD---EEAAP- 459
+++P ++KE RS + A+ ++L L+ + V PY+ + + PD EE +
Sbjct: 724 QKWVIPDLIKELRSTLHEEAQQFVLRSCTGKLYKWLKVAPYKPQ---LPPDFGYEEWSTL 780
Query: 460 ---RVLACCWGPGKPETTFVMLDS-SGEVVDVLFTGCLTLR--SQNVRDQQSKKNDQERL 513
RVL + P F + + G++ D L + R S N+ ++ K D +L
Sbjct: 781 RGIRVLGLAYDPDHSVAAFCAVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLRKL 840
Query: 514 LKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLP 573
F+ +PH+VV+GA + +++ DI EI+ H + + + + D L
Sbjct: 841 SDFIKMKKPHIVVIGAESRDAQNIQADIKEIL------HELETSEQFPPIEVEIIDNELA 894
Query: 574 RLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLT 633
++Y NS+ +K+A +L R +Q+PL + LC EIL + PL+ +
Sbjct: 895 KIYANSKKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQERVP 954
Query: 634 PDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA- 692
++ + ++ T++VGLDINL + LQ+I GLGPRK +L + L ++
Sbjct: 955 REQLLEQLSLQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRKGQALLKLLKQSNQR 1014
Query: 693 IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELA 752
+ R VT LG +VF+N GF+++ S S+ ++++LD +R+HPE+Y A+++A
Sbjct: 1015 LENRTQLVTVCHLGPRVFINCSGFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMA 1074
Query: 753 KEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRE---NKRETLYLI 809
+ D D+E A+E + + P+ LK LD E +R+ +K TLY I
Sbjct: 1075 IDAMEYD------DEETNPAGALEEILESPERLKDLDLDAFAVELERQGFGSKSITLYDI 1128
Query: 810 RRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQA-----TVRRVQGQR 861
R EL ++D+R Y +PS +E F M++ ET D+ G+ V A T RR QG +
Sbjct: 1129 RNELSCLYKDYRTPYTKPSAEELFDMLTKETPDSFYVGKCVTAMVTGFTYRRPQGDQ 1185
Score = 385 (140.6 bits), Expect = 2.0e-103, Sum P(3) = 2.0e-103
Identities = 96/322 (29%), Positives = 167/322 (51%)
Query: 866 LESGLAGMLMKEDYSD-DWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNN 924
LE+GL G + ++ SD R+ E +++ ++ +I I +R+ V R +++++
Sbjct: 1236 LENGLPGFIHIKNLSDRQVRNPE--ERVRVSQMIHVRIIKIDIDRFSVECSSRTADLKDV 1293
Query: 925 RYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLLS 984
+ D YY + R+I HP F N + E + +L+
Sbjct: 1294 NNEWRPRRDNYYDYVTEEQDNRKVSDAKARALKRKIYARRVIAHPSFFNKSYAEVVAMLA 1353
Query: 985 AKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044
+ GE +RPSS+ +LT T KV D ++ H D+ E GK++ D +G++L IG +
Sbjct: 1354 EADQGEVALRPSSKSKDHLTATWKVADDIFQHIDVREEGKEN-DFS----LGRSLWIGTE 1408
Query: 1045 TFEDLDEVVDRYIDPLVSHLKAMLSYRKFRK----GSKAEVD---ELLRIEKAEFPTRIV 1097
FEDLDE++ R+I P+ + ++ Y+ ++ G + E D +LLR EKA P +I
Sbjct: 1409 EFEDLDEIIARHIMPMALAARELIQYKYYKPNMVTGDENERDVMEKLLREEKANDPKKIH 1468
Query: 1098 YGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQ 1157
Y F S PG F+L+Y+ T HEY+ + P+G++FR ++F+ ++ L+ +F+ H DP
Sbjct: 1469 YFFTASRAMPGKFLLSYLPKTKVRHEYVTVMPEGYRFRGQIFDTVNSLLRWFKEHWLDPT 1528
Query: 1158 GDSAPSIRSVAAMVP---MRSP 1176
+ P+ S + + P MR P
Sbjct: 1529 --ATPASASASNLTPLHLMRPP 1548
Score = 78 (32.5 bits), Expect = 2.0e-103, Sum P(3) = 2.0e-103
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 5 ECRSLRKALAGPPTDGESIVD-ESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDI 63
E LR+ P +G +D E+ WIY + Q S ++ + + I
Sbjct: 291 ERMQLREVPVTPVPEGSDELDLEAEWIYKYAFCKHT-VSEQEKPESREKMRKPPTTVNKI 349
Query: 64 MRFLDLLHLQKLDIPFIAMYRKE 86
+ L+ + Q+L++PFIA YRKE
Sbjct: 350 KQTLEFIRNQQLEVPFIAFYRKE 372
>WB|WBGene00001259 [details] [associations]
symbol:emb-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR000980 InterPro:IPR003029
InterPro:IPR006641 InterPro:IPR017072 Pfam:PF00575
PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126 SMART:SM00252
SMART:SM00732 EMBL:Z35663 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0006351 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0032784 Gene3D:3.30.420.140
EMBL:D14635 EMBL:Z35719 PIR:S35241 RefSeq:NP_497969.1
ProteinModelPortal:P34703 SMR:P34703 STRING:P34703 PaxDb:P34703
EnsemblMetazoa:T04A8.14 GeneID:175621 KEGG:cel:CELE_T04A8.14
UCSC:T04A8.14 CTD:175621 WormBase:T04A8.14 eggNOG:COG2183
GeneTree:ENSGT00510000047446 HOGENOM:HOG000001562 InParanoid:P34703
KO:K11292 OMA:EADWIYR NextBio:888936 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 Uniprot:P34703
Length = 1521
Score = 694 (249.4 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
Identities = 214/774 (27%), Positives = 363/774 (46%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW ++D D+KW L ++K+ + Y R E + + D+ A + + D+ + AE
Sbjct: 387 LWRVYDFDEKWCHLSEKKNKI--YDLMRRMREYQELSDDLT-AKRRPISDADLMDTKYAE 443
Query: 180 TEREVDDVDLKFNL----------HFPPGEV-GVDEGQYKRPK-----RSTKYSSCSKAG 223
T ++ D+ F L + G + G +E Q R K R+ KY C + G
Sbjct: 444 TLEQLTDIHANFQLLYGALLDDMIRWEKGRLTGEEEEQEYRVKFKSSIRNDKYQMCVENG 503
Query: 224 LWEVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHM 283
+ E+A +FG K E +DP P E A + C F+ S VL GA+ M
Sbjct: 504 IGELAGRFGLTAKQFSENLNWKKHDIE-QDPM-LPLEAAEEYVCPAFSDSDMVLNGAKFM 561
Query: 284 AAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDA 343
A EIS +P VR VR F +A PT G ID H ++++ KP+R
Sbjct: 562 LAKEISRQPQVRHSVRQEFRQSAHFWIKPTKKGRDTIDQTHPLYDKRYIKSKPVRSLTAE 621
Query: 344 QWLLIQKAEEEKLLQVTIKLP----EDS----LNKLFSDCKEHYLSDGVSKSAQLWNDQR 395
++L KA+E+ L+ V I +DS +NK SD + D +++ + WN R
Sbjct: 622 EFLFYHKAKEDGLVDVLIMYESEEDQDSNNYLVNKYLSD--SIFQKDEYTENVEQWNSVR 679
Query: 396 ELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPY-----QRKDND 450
+ + A+ L+P M E + + AK+ + + K +++S Y D+D
Sbjct: 680 DECVNMAITEMLVPYMRDELYNTILEEAKTAVAKKCRKEFASRISRSGYLPDFDNNDDDD 739
Query: 451 ITPDEEAAPRVLACCWGPGKPETTF-VMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKND 509
D+ A R++A C+ + E +F VM+D +G +VD L T R+ + +K +
Sbjct: 740 DGMDQHGARRIMAVCYPTERDEASFGVMVDENGAIVDYLRMVHFTKRTFGGGNNGLRKAE 799
Query: 510 QERLLK-FMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYG 568
L K F+ +PH + L ++ CT LK D+ E + + ++ + ++ + +
Sbjct: 800 SMDLFKKFVQRRKPHAIGLNIEDMECTRLKRDLEEAVADLFSQN---LIYK--PIPVFLM 854
Query: 569 DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPL 628
D ++Y S +S + P +++A++L R L +P+ A L +I L PL
Sbjct: 855 DNEAAKVYMRSNVSLAENPDHPPTLRQALSLARLLLDPIPEYAHLWNIDEDIFCLSLHPL 914
Query: 629 ENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL- 687
+ + ++ ++ +V+ N+ G+DIN LQF GLGPRKA L +S+
Sbjct: 915 QRDIDQEQLALVLSHELVNKVNEEGVDINKCAEFPHYTNMLQFTCGLGPRKATDLLKSIK 974
Query: 688 VRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGL 747
I +R V LG KVF+N GF+++ + + ++++LD +R+HPE+Y
Sbjct: 975 ANDNLIESRSKLVVGCKLGPKVFMNCAGFIKIDTIKVSEKTDAYVEVLDGSRVHPETYEW 1034
Query: 748 AQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKREN---KRE 804
A+++A + +E D + D A A++ + + PD L+ LD E R+ K+
Sbjct: 1035 ARKMAVDA----LEVDDSADPTA---ALQEIMESPDRLRDLDLDAFADELSRQGFGEKKS 1087
Query: 805 TLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQ 858
TLY I EL ++D R ++EP+ E Y + + + EG V TV+ VQ
Sbjct: 1088 TLYDISSELSARYKDLRQPFQEPT-GELLYDLLARSGKEIREGAKVLGTVQSVQ 1140
Score = 325 (119.5 bits), Expect = 1.8e-93, Sum P(2) = 1.8e-93
Identities = 81/297 (27%), Positives = 146/297 (49%)
Query: 867 ESGLAGMLMKEDYSDDWRDSELSD-KLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNR 925
++G+ G ++ S D+ L+ K+++ K+ + K R+ +FL C+ S+++ +
Sbjct: 1203 DNGMTGFCPNKNISSSHVDNPLTRVKINQPYYF--KVLKLDKERFSLFLSCKSSDLKED- 1259
Query: 926 YQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLLSA 985
D Y+ +R+I HP F NV+ + A K+L
Sbjct: 1260 --DLSQRDQYWDEHQYQADLELMKSESKKKTEANTRVKRVIAHPNFHNVSYEAATKMLDE 1317
Query: 986 KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDT 1045
+ E IIRPS+ S L++T K+ D VY + + E KD + IG+ L +G +
Sbjct: 1318 MDWSECIIRPSANKDSGLSVTWKICDRVYHNFFVKESAKDQ-----VFSIGRQLSVGGED 1372
Query: 1046 FEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAE----VDELLRIEKAEFPTRIVYGFG 1101
FEDLDE++ R++ P++ + +++ F E V++ +R +K E R Y F
Sbjct: 1373 FEDLDELIARFVQPMIQISHEITTHKYFFPNGTCEETEAVEQFVREKKRELG-RSPYVFS 1431
Query: 1102 ISHEHPGTFILTYI--RSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDP 1156
S+ P F ++Y+ + HEY + P G +FR + F+ +DR++A+F+RH +P
Sbjct: 1432 ASYRQPCQFCISYMFDNTERIRHEYFKIVPHGVRFRHQNFDTLDRMMAWFKRHFHEP 1488
>POMBASE|SPAC1F7.01c [details] [associations]
symbol:spt6 "nucleosome remodeling protein Spt6"
species:4896 "Schizosaccharomyces pombe" [GO:0000183 "chromatin
silencing at rDNA" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006348 "chromatin silencing at
telomere" evidence=IMP;IDA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IDA] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP;IDA] [GO:0031454 "regulation
of extent of heterochromatin assembly" evidence=IMP] [GO:0031618
"nuclear centromeric heterochromatin" evidence=IDA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0034401 "regulation of transcription by chromatin
organization" evidence=ISO] [GO:0043486 "histone exchange"
evidence=NAS] [GO:0044382 "CLRC ubiquitin ligase complex
localization to heterochromatin" evidence=IMP] [GO:0060147
"regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:1900111 "positive regulation of histone H3-K9
dimethylation" evidence=IMP] [GO:1900114 "positive regulation of
histone H3-K9 trimethylation" evidence=IMP] [GO:0016584 "nucleosome
positioning" evidence=IMP] Pfam:PF00017 InterPro:IPR000980
InterPro:IPR003029 InterPro:IPR006641 InterPro:IPR017072
Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126
SMART:SM00252 SMART:SM00732 PomBase:SPAC1F7.01c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0003723 GO:GO:0030466
GO:GO:0030702 GO:GO:0016788 GO:GO:0000183 GO:GO:0006348
GO:GO:0034401 GO:GO:0043486 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0031618 GO:GO:0071441 InterPro:IPR022967
SMART:SM00316 GO:GO:0032784 GO:GO:0031454 Gene3D:3.30.420.140
eggNOG:COG2183 KO:K11292 OMA:EADWIYR Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 InterPro:IPR018974 Pfam:PF09371
HOGENOM:HOG000193710 OrthoDB:EOG47DDQ9 PIR:T38095 PIR:T50252
RefSeq:NP_594487.2 ProteinModelPortal:Q09915 STRING:Q09915
EnsemblFungi:SPAC1F7.01c.1 GeneID:2541605 KEGG:spo:SPAC1F7.01c
NextBio:20802699 GO:GO:0044382 GO:GO:1900111 GO:GO:1900114
GO:GO:0060147 Uniprot:Q09915
Length = 1365
Score = 628 (226.1 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 179/616 (29%), Positives = 304/616 (49%)
Query: 549 VEEHPRD--VGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNP 606
+ +H +D HE +L I+ DE + RLY+NS + D+ P VAL RY+QNP
Sbjct: 756 IRQHVQDSLTSHEPVDL-IMVNDE-VARLYQNSTRAVDEFPTLPTISCYCVALARYVQNP 813
Query: 607 LAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQF 666
L A + GR+++S P ++ L PD + +E +VD+++ VG+DIN A+ +++
Sbjct: 814 LFEYAAM---GRDLMSLSFDPWQHLLPPDVLWKYLETALVDISSLVGIDINEAVTNKYEA 870
Query: 667 APLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQA 725
L +I+GLGPRKA + + + G I R D ++ + +KVF+N F +
Sbjct: 871 NILPYIAGLGPRKADYVLKKIAATGGRIDNRSDLISKQIMSRKVFINCSSFFIIPNDEYP 930
Query: 726 ASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDL- 784
+D+LD TRIH E Y LA+++A + D E D+ + E + + H+ + +
Sbjct: 931 N-----MDILDSTRIHNEDYELARKMASDALELD-EEDIEELETNRGV-VYHLLEENETG 983
Query: 785 -LKTYLLDRHIKEKKRE---NKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGET 840
L +L+ + + +RE KR TL IR EL + + RN + + + E F M++GE
Sbjct: 984 KLDELVLEEYADQLEREFHQKKRNTLEKIRLELKDPYGEQRNVFHKLTPSEIFLMLTGEN 1043
Query: 841 EDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTC 900
+ L +V VRRV + L+ G+ G + ++ SDD+ L G +
Sbjct: 1044 PEELQADAIVPVNVRRVTNRFVAVKLDCGIDGNIKADEVSDDFIPPP--QLLQVGQTVEG 1101
Query: 901 KIKSIQKNRYQVFLVCRESEMR--NNRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXX 958
I S+ + + V L R S ++ N++ Q + Y+
Sbjct: 1102 VIISLDEANFMVDLSLRNSVLQSANSKRQTSSHRTSYWDTEAEKRDTERMQAETQAEQRV 1161
Query: 959 XHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKD 1018
R+I HP F+++ A +A LS + G+ +IRPSS+G ++ +T KV +G Y H D
Sbjct: 1162 A----RVIKHPLFKDLNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHID 1217
Query: 1019 IIEGGKDHKDI--KSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKG 1076
++E K+++ + L+ G+ K+ + DLDE++ +I + + M + KFRKG
Sbjct: 1218 VLELEKENEFTIGQKLLVKGRFEKMTYQ-YSDLDELIVLHIKAIAKKIDEMCIHDKFRKG 1276
Query: 1077 SKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTN-PHHEY-IGLYPKGFKF 1134
++AE ++ L P R Y F H+HPG FIL + S N P + + + P F
Sbjct: 1277 TQAETEKWLESYSEANPKRSCYAFCFDHQHPGYFILCFKASVNSPVTAWPVKVIPNAFFL 1336
Query: 1135 RKRMFEDIDRLVAYFQ 1150
+ ++ D+ L F+
Sbjct: 1337 QGNVYGDMTALCNGFK 1352
Score = 301 (111.0 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 115/432 (26%), Positives = 193/432 (44%)
Query: 149 EEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDE---- 204
+++ ++Y + L +N L + EAA + +DD L +HF E D
Sbjct: 380 KQDILKLYSD--LGINDDL---VVPFCEAASSLDAIDD--LNDYIHFTYSEQIRDRALLM 432
Query: 205 GQYKRPKRSTKYS---SCSKAGLWEVASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEM 261
G R + +KYS K+ L+ + +FG +ED +PEE+
Sbjct: 433 GTGLRRPQGSKYSFFEKFRKSSLYNLVKEFGMSAKDFSFNVAQGARLRFVEDNTLSPEEL 492
Query: 262 ASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAID 321
+ + +S + VLQ AR + A EI +P RK R + VV+ T G I
Sbjct: 493 SRTYVTNELSSPEQVLQKARRVLAEEIIHDPQFRKSFRDKLYNAGVVTVLATQKGVRKIG 552
Query: 322 SFHQFAGVKWLREKPLRKFEDAQWLLIQ--KAEEEKLLQVTIKLPEDSLNKLFSDCKEHY 379
S H + K+L+ KPL FE L ++ KAEEE L+Q++I+ ED + +F E +
Sbjct: 553 SEHPYYEFKYLKRKPLGSFELEPILFLKMLKAEEEGLIQLSIEF-EDP-DDVFKGLLELF 610
Query: 380 LSDGVSKSAQLWNDQRELILKDALDNF--LLPSMVKEARSLMSGRAKSWLLMEYGKALWN 437
+SD S++A WN QREL+LK+ F L P ++E + R L M L++
Sbjct: 611 VSDNFSENAMQWNAQRELVLKEVFKRFSALAPDAIRET---LRSRYLDELGMRCRNQLFS 667
Query: 438 KVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTF--VMLDSSGEVVDVLFTGCLTL 495
++ PY+ + D P VLA G G+ V +D GE D +L
Sbjct: 668 RLDQAPYEPSTKNF--DRGTIPSVLAVSNGKGESSDAIICVFVDDVGEPTD-------SL 718
Query: 496 RSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRD 555
+ ++RD + Q +F+ +P V+ + +++S ++ + + + P D
Sbjct: 719 KLADLRDLAN----QAMFAEFVEKVKPDVIGVSGMSVSAHKIRQHVQD---SLTSHEPVD 771
Query: 556 VGHEMDELSIVY 567
+ DE++ +Y
Sbjct: 772 LIMVNDEVARLY 783
Score = 46 (21.3 bits), Expect = 1.3e-83, Sum P(3) = 1.3e-83
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 75 LDIPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTPTLKWHKVLWAIHDLDKK-WLLL 133
L++PFI +R++ + + E+N + TP L + LW I L K W L
Sbjct: 331 LEVPFIWQHRRDYIVH--NNRERNTI----------TPLLSQND-LWNIFFLCTKFWSLH 377
Query: 134 QKRKSALQSY 143
K++ L+ Y
Sbjct: 378 SKKQDILKLY 387
Score = 40 (19.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 1253 ERQDSSYDTPKWDSANKSGD 1272
+RQ SS+ T WD+ + D
Sbjct: 1128 KRQTSSHRTSYWDTEAEKRD 1147
Score = 37 (18.1 bits), Expect = 5.1e-56, Sum P(2) = 5.1e-56
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 136 RKSALQSYYKKRYEEESRRIYDET--RLALNQQ-LFDSISKSLEAAETEREVDDVDLKFN 192
++ L++ + + EEE + DE R ++ + D + +E E E E + + K+
Sbjct: 134 QEETLENIFSEEEEEEENEVDDEAPNRTQGHRAGVIDEFADFIEQDEFEDE-ERQEEKYE 192
Query: 193 LHFP-----PGEVGVDEGQY 207
P P +G+ + Y
Sbjct: 193 TGPPIESVRPEALGISDDDY 212
>ASPGD|ASPL0000037137 [details] [associations]
symbol:AN3423 species:162425 "Emericella nidulans"
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031618 "nuclear
centromeric heterochromatin" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0030466 "chromatin silencing
at silent mating-type cassette" evidence=IEA] [GO:0060147
"regulation of posttranscriptional gene silencing" evidence=IEA]
[GO:0031454 "regulation of extent of heterochromatin assembly"
evidence=IEA] [GO:0044382 "CLRC ubiquitin ligase complex
localization to heterochromatin" evidence=IEA] [GO:0071441
"negative regulation of histone H3-K14 acetylation" evidence=IEA]
[GO:0006348 "chromatin silencing at telomere" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
[GO:1900111 "positive regulation of histone H3-K9 dimethylation"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:1900114 "positive regulation of histone H3-K9
trimethylation" evidence=IEA] InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001
PROSITE:PS50126 SMART:SM00252 GO:GO:0005634 EMBL:BN001306
GO:GO:0006357 GO:GO:0006351 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183 KO:K11292
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 EMBL:AACD01000056
RefSeq:XP_661027.1 STRING:Q5B7Q7 GeneID:2874464 KEGG:ani:AN3423.2
HOGENOM:HOG000193710 OMA:YRKFRKG OrthoDB:EOG47DDQ9 Uniprot:Q5B7Q7
Length = 1417
Score = 782 (280.3 bits), Expect = 1.4e-74, P = 1.4e-74
Identities = 284/1140 (24%), Positives = 514/1140 (45%)
Query: 63 IMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTPTLKWHKVL-- 120
+ + L+ L ++PFI +RK+ + +K + T+K K+L
Sbjct: 324 VAKVLEFLVTDDWEVPFIFQHRKDYMIHTVKVPVNGASADDSSSQY----TIKAEKLLNM 379
Query: 121 ---WAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSI-SKSLE 176
W I D D K+ L ++++ +Q + YD R + + D I + L
Sbjct: 380 TDLWDIFDYDLKFKALVEKRNTIQ------------KTYDNIRSVFSVE--DPIVEEMLP 425
Query: 177 AAETEREVDDVDLKFNLHFP-PGEV-------GVDEGQYKRPKRSTK--YSSCSKAGLWE 226
A T E+ D+ + LHF ++ G G+ +R K T+ + + +
Sbjct: 426 IATTMEELQDI--QDYLHFQYASQIRDLTLTNGDTNGEVQRRKALTRNFFERVRNSKAYG 483
Query: 227 VASKFGYXXXXXXXXXXXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAV 286
+ FG ED E PE+MA FN+S VL+ A+ M A
Sbjct: 484 LVRAFGITADAFAQNALKEGRRQYTEDASERPEDMADGLVDNDFNNSSQVLKAAKGMFAE 543
Query: 287 EISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWL 346
EI P +RK +R + N V T G ID H + K+LR++ L + L
Sbjct: 544 EIVMSPKMRKVIRQAYYMNGAVDCFRTEKGLRRIDEQHPYYEFKYLRDQQLSDIARSPEL 603
Query: 347 LIQ--KAEEEKLLQVTIKLP--EDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDA 402
++ KAEEE L++V ++ E+ +L+ + + SD S+ A WN R + A
Sbjct: 604 FLRMLKAEEEGLIEVKVRFENFENFRKRLYPNIE----SDNYSELADSWNRLRREAVDLA 659
Query: 403 LDNF--LLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPR 460
L ++ VKE + ++ + E +A ++ PY+ K + PR
Sbjct: 660 LGKLERVINRSVKEN---IRQECENHVAKECREAFSQRLDQAPYKPKGMILG----TVPR 712
Query: 461 VLACCWGPG---KPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQ-SKKNDQERLLKF 516
VLA G G + + ++ G V++ G T S +D+ + D E L++
Sbjct: 713 VLALSTGTGIIGRAPIHWAYVEEDGRVLE---NGKFTDLSLGDKDRGIADGKDLEALVEL 769
Query: 517 MMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEE-------HPRDVGHEM-DELSIVYG 568
+ +P V+ G +S + + +Y+++ ++V+ + D E+ D L +V
Sbjct: 770 VNRRRPDVI--GVSGMSPETRR--LYKLLTEIVDAKDLRGALYTDDRDEEVSDRLEVVIV 825
Query: 569 DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPL 628
++ + RLY+NS + P V L +YLQ+PL A+L GR+I+S + P
Sbjct: 826 NDEVARLYQNSDRAKKDHPSFAPLTHYCVGLAKYLQSPLKEYASL---GRDIVSIQFKPG 882
Query: 629 ENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLV 688
+ + + +E +VD+ N VG+DIN A+ L ++ GLGPRKAA L + +
Sbjct: 883 QQLVAQELLLKQLETALVDMVNLVGVDINEAVSDPATANLLPYVCGLGPRKAAHLLKIVN 942
Query: 689 RAGAIFTRKDFVTAHG-----LGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPE 743
G + + + G +G KV+ N+ FL + A S D LD+TR+HPE
Sbjct: 943 MTGGVVNSRFSLLGVGVQYPAMGVKVWNNSASFLYIDYESADADS----DPLDNTRVHPE 998
Query: 744 SYGLAQELAKEVYNRDIEGDLN--DDEDALEMAIEHV--RDRPDLLKTYLLDRHIKEKKR 799
Y +A+++A + D E D+ DE+ + + D D + +L+ + ++ ++
Sbjct: 999 DYDIARKMAADALELD-EEDIKAETDENGPGAIVRKLFREDAQDRVNDLILEEYAEQLEK 1057
Query: 800 ---ENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRR 856
+ KR TL IR EL +++ R + S D+ F M++GET TLAEG VV +++
Sbjct: 1058 NLNQRKRATLETIRAELQQPYEELRKHFVFLSTDDIFTMLTGETAQTLAEGMVVPISIKS 1117
Query: 857 VQGQRAICVLESGLAGMLMKEDYSDDWRDSELSD--KLHEGDILTCKIKSIQKNRYQVFL 914
++ L+ G+ ++ + + +D + D + LH+ + K+ + + + +
Sbjct: 1118 IRDDHIEGKLDCGVDALVGESEMTDRY-DIPVRAIYSLHQ--TVPAKVMFLNRKTFTCNV 1174
Query: 915 VCRESEM-RNNRYQHCQNLDPYYHXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQN 973
RE ++ R +R D + R+I HP F+
Sbjct: 1175 SLREEQVSRPSR----PAADRAHAGEWDYRQEEQDREALEAKTQDGGRTMRVIKHPLFRP 1230
Query: 974 VTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLV 1033
+ +A++ L ++ G+ +IRPSS+GP +L +T KV DG++ H D++E K+++
Sbjct: 1231 FNSTQAVEFLGSQSRGDVVIRPSSKGPDHLAVTWKVADGIFQHIDVLELDKENE-----F 1285
Query: 1034 GIGKTLKIG-EDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEF 1092
+G+TLK+G T+ DLD+++ ++ + + M+ + K+++GSK + L
Sbjct: 1286 SVGRTLKVGGRFTYSDLDDLIFNHVKAMAKKVDEMMLHEKYQEGSKDSTYQWLETYTKAN 1345
Query: 1093 PTRIVYGFGISHEHPGTFILTYIRSTNPH-HEY-IGLYPKGFKFRKRMFEDIDRLVAYFQ 1150
P R Y F I +H G F L + + H + + + P+G++ ++ + D+ L F+
Sbjct: 1346 PRRSAYAFCIDPKHAGYFFLCFKAGEHAQVHSWPVKVIPQGYELQRNPYPDMRALCNGFK 1405
>UNIPROTKB|G4NEB7 [details] [associations]
symbol:MGG_11491 "Transcription elongation factor SPT6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] Pfam:PF00017 InterPro:IPR000980
InterPro:IPR003029 InterPro:IPR006641 InterPro:IPR017072
Pfam:PF00575 PIRSF:PIRSF036947 PROSITE:PS50001 PROSITE:PS50126
SMART:SM00252 Gene3D:3.30.505.10 EMBL:CM001235 GO:GO:0006139
GO:GO:0006357 GO:GO:0003746 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0032784 Gene3D:3.30.420.140 KO:K11292 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
PANTHER:PTHR10145 RefSeq:XP_003718184.1 ProteinModelPortal:G4NEB7
EnsemblFungi:MGG_11491T0 GeneID:2675197 KEGG:mgr:MGG_11491
Uniprot:G4NEB7
Length = 1407
Score = 717 (257.5 bits), Expect = 2.3e-67, P = 2.3e-67
Identities = 265/1057 (25%), Positives = 468/1057 (44%)
Query: 131 LLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQ-LFDSI-SKSLEAAETEREVDDVD 188
LLL+ + K R E R I D++ L + D + + + AET E+ DV
Sbjct: 373 LLLEDLWRIVDLDLKFRSFVEKRNILDKSYQNLKTAGIQDDVFDEMVYRAETIEELQDVQ 432
Query: 189 LKFNLHFPP-----GEVGVDEGQYKRPKRSTK-YSSCSKAGLWEVASKFGYXXXXXXXXX 242
+ H+ G +G KR +ST + + ++ +G
Sbjct: 433 DYMHFHYSSQMKDLAAAGAIKG-VKRVAKSTGVFERVRNSTVYNFVKAYGITPDKLAQNA 491
Query: 243 XXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIF 302
ED + P ++A + + F+++ V++ AR M A E+ P +R++ + +
Sbjct: 492 LREGKKTSAEDNSKMPLDLADSLTDSYFDTADHVIKAARSMFAEELFLNPRMRRHFKVAY 551
Query: 303 MDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQ--WLLIQKAEEEKLLQVT 360
+ +V T G ID H F +K+L + + +L + KAEEE L++V
Sbjct: 552 YNMGIVDCRRTEKGLRKIDESHPFYEIKYLINQTIGDLARRPEIFLKMMKAEEEGLVEVK 611
Query: 361 IKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNF--LLPSMVKEARSL 418
+ L + + + + S+ S+ A WN++R+ L A ++ VKE SL
Sbjct: 612 LTLQNE--REFRKNLLSEFQSENFSERADAWNEERKKALDLAFPKLEKIITKGVKE--SL 667
Query: 419 MSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETTFVM- 477
+ + LL + +V P++ K + PR L G P +
Sbjct: 668 RTA-CQDELLKICREEFSKRVDQAPFRPKGFMLG----MTPRCLVISNGMADPNRDLLCW 722
Query: 478 -LDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTS 536
L G++V+ G L RD+ ++ ++ + + +P V+ + +
Sbjct: 723 ALVDDGKLVEQGKFGSLG------RDEAARTAFEDVVERA----RPDVIGVSGWSADTQR 772
Query: 537 LKDDIYEIIFK---MVEEHPR-DVGHEMDELS--IVYGDESLPRLYENSRISSDQLPGQK 590
L D+ +I + M E D EL +V DE+ RLY++S P
Sbjct: 773 LVKDLETLISEKGLMGNEFDDPDTDEVRTELLEVVVVNDETA-RLYKDSARGVSDYPNLN 831
Query: 591 GNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTN 650
+ V L RY+QNPL L G++ S + P +N L P + +E V+VD+ N
Sbjct: 832 PVTRYCVGLARYMQNPLKEYCLL---GKDNTSLAIHPCQNLLPPAKLLRTMETVLVDIVN 888
Query: 651 QVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGLGK-- 707
G+DIN AI + A L +++GLGPRKA ++ +++ G + TR + V GK
Sbjct: 889 LCGVDINDAISDPREAALLPYVAGLGPRKATAVLKAINANGGVVNTRDELVGDPDSGKLQ 948
Query: 708 ----KVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGD 763
+V+ N F + S + A+ D LD TRIHP Y LA+++A + + D E D
Sbjct: 949 VVGPRVWNNCASFFII--SYEHATPEA--DPLDATRIHPMDYELARKMAADALDMD-EED 1003
Query: 764 LND--DEDALEMAIEHV--RDRPDLLKTYLLDRHIKEKKREN--KRETLYLIRRELIHGF 817
+ DE + + +R + L ++ + ++ +R+ K+ TLY IR E +
Sbjct: 1004 IKAEVDEGGPPAVVRRLFKENRQETLYDLSMEDYAEQLERQGLLKKATLYAIRGEFQSPY 1063
Query: 818 QDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKE 877
++ R+ + + + D+ F M +GET+D+L E +V VR V+ AI L+ G+ G +
Sbjct: 1064 EELRHSFVQLTADQIFTMFTGETKDSLCEQMIVPVNVRVVKEDFAIVKLDCGIEGRIEAH 1123
Query: 878 DYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNN-RYQHCQNLDPYY 936
+ S E+ L G K+ + + + + RE +R R H + D +
Sbjct: 1124 EVSSRHTPREI---LQTGQTTRAKVLELNRKDFMCKMSVREDALRYPYRKMHDHDRDNWD 1180
Query: 937 HXXXXXXXXXXXXXXXXXXXXXXHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPS 996
+R+I HP F++ + EA + L ++ PGE +IR S
Sbjct: 1181 FRQEEKDAADLTEKDVVTGRA-----QRVIKHPMFKSFNSTEAEQYLGSQPPGELVIRSS 1235
Query: 997 SRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED-TFEDLDEVVDR 1055
S+G +L +T KV DGV H D++E K+++ +G+TLK+ T+ DLDE++
Sbjct: 1236 SKGSDHLAITWKVADGVIQHIDVLELDKENE-----FALGRTLKVANKYTYSDLDELIVE 1290
Query: 1056 YIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTY- 1114
++ + + ++ KF+KGS+++++ L PTR Y F + +HPG F+L +
Sbjct: 1291 HVKAMARKVDELMQSDKFQKGSRSDLERWLTTYMDANPTRSTYAFCLDTKHPGYFVLCFK 1350
Query: 1115 -IRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQ 1150
RS+ + + P ++ + D+ L F+
Sbjct: 1351 ASRSSKIGSWSVRVIPGAYEMMGSQYPDVRALCNGFK 1387
Score = 174 (66.3 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 70/302 (23%), Positives = 128/302 (42%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW I DLD K+ ++++ L Y+ ++ I D+ +FD + + AE
Sbjct: 378 LWRIVDLDLKFRSFVEKRNILDKSYQNL---KTAGIQDD--------VFDEM---VYRAE 423
Query: 180 TEREVDDVDLKFNLHFPP-----GEVGVDEGQYKRPKRSTK-YSSCSKAGLWEVASKFGY 233
T E+ DV + H+ G +G KR +ST + + ++ +G
Sbjct: 424 TIEELQDVQDYMHFHYSSQMKDLAAAGAIKG-VKRVAKSTGVFERVRNSTVYNFVKAYGI 482
Query: 234 XXXXXXXXXXXXKMGDELEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPC 293
ED + P ++A + + F+++ V++ AR M A E+ P
Sbjct: 483 TPDKLAQNALREGKKTSAEDNSKMPLDLADSLTDSYFDTADHVIKAARSMFAEELFLNPR 542
Query: 294 VRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQ--WLLIQKA 351
+R++ + + + +V T G ID H F +K+L + + +L + KA
Sbjct: 543 MRRHFKVAYYNMGIVDCRRTEKGLRKIDESHPFYEIKYLINQTIGDLARRPEIFLKMMKA 602
Query: 352 EEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSM 411
EEE L++V + L + + + + S+ S+ A WN++R K ALD P +
Sbjct: 603 EEEGLVEVKLTLQNE--REFRKNLLSEFQSENFSERADAWNEER----KKALD-LAFPKL 655
Query: 412 VK 413
K
Sbjct: 656 EK 657
>CGD|CAL0002923 [details] [associations]
symbol:SPT6 species:5476 "Candida albicans" [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IGI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IEA] [GO:0071931
"positive regulation of transcription involved in G1/S phase of
mitotic cell cycle" evidence=IEA] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0000433 "negative regulation of
transcription from RNA polymerase II promoter by glucose"
evidence=IEA] [GO:0070827 "chromatin maintenance" evidence=IEA]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
[GO:0031564 "transcription antitermination" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0000414
"regulation of histone H3-K36 methylation" evidence=IEA]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:1900436
"positive regulation of filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=IEA] [GO:0001073 "DNA
binding transcription antitermination factor activity"
evidence=IEA] Pfam:PF00017 InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001 SMART:SM00252
CGD:CAL0002923 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 Gene3D:3.30.505.10 GO:GO:0006357 GO:GO:0009267
GO:GO:0016788 GO:GO:0006368 EMBL:AP006852 GO:GO:0036170
GO:GO:1900436 GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183
KO:K11292 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
EMBL:AACQ01000089 RefSeq:XP_715187.1 RefSeq:XP_889033.1
ProteinModelPortal:Q3MNT0 STRING:Q3MNT0 GeneID:3643171
GeneID:3704048 KEGG:cal:CaO19.7136 KEGG:cal:CaO19_7136
Uniprot:Q3MNT0
Length = 1401
Score = 551 (199.0 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 191/754 (25%), Positives = 347/754 (46%)
Query: 127 DKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDD 186
D W ++ K S Y+KR E +I D L ++ +L I K+L++ +++ D
Sbjct: 375 DDVWRIV-KLDIEYHSLYEKRLNTE--KIIDS--LEIDDELVKDI-KTLDSMVAIQDMHD 428
Query: 187 -VDLKFNLHFPPGEVGVDEGQ-----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXX 240
+ ++ E + Y+R + + Y + G+ A +FG
Sbjct: 429 YIQFTYSKEIRQREETQNRKHSKFALYERIRENVLYDAVKAYGI--TAKEFGENVQDQSS 486
Query: 241 XXXXXKMG-DELEDPKETPEEMASNF---KCAMFNSSQAVLQGARHMAAVEISCEPCVRK 296
+DP E+P++M +F + R A EI P +R
Sbjct: 487 KGFEVPYRIHATDDPWESPDDMIERLIQDDEVIFRDEKTARDAVRRTFADEIFYNPKIRH 546
Query: 297 YVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKW-LREKPLRKFEDAQWLLIQKAEEEK 355
VRS + A +S T G ++ID+ FA +K+ + P +L++ E E+
Sbjct: 547 EVRSTYKLYASISVAVTEKGRASIDAHSPFADIKYAINRSPADLIAKPD-VLLRMLEAER 605
Query: 356 LLQVTIKLPEDSLNKLFSDCKEHYL-SDGVSKSAQLWNDQRELILKDALDNFLLPSMVKE 414
L V IK+ F DC + L SDG S ++ WN +R+ +L+ A+ L +
Sbjct: 606 LGLVVIKVETKDFANWF-DCLFNCLKSDGFSDISEKWNQERQAVLRTAISR-LCAVVALN 663
Query: 415 ARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETT 474
+ + + + + L K+ P+ DI + VLA +G G ++
Sbjct: 664 TKEDLRRECERLIASKVRHGLLAKIEQAPFTPYGFDIG----SKANVLALTFGKGDYDSA 719
Query: 475 FV--MLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNL 532
V + G+V F S+N + + K ++ F D P VVV+ N
Sbjct: 720 VVGVYIKHDGKVSR--FFKSTENPSRNRETEDAFKGQLKQF--FDEDETPDVVVVSGYNA 775
Query: 533 SCTSLKDDIYEIIFKMVEEHPRDVGHEMDE-----LSIVYGDESLPRLYENSRISSDQLP 587
+ L D +++ V E+ V E D+ + +++G + RLY+NS + + P
Sbjct: 776 NTKRLHD----VVYNFVSEYGISVKSEFDDGSSQLVKVIWGQDETARLYQNSERAKKEFP 831
Query: 588 GQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVD 647
+ VK A++LGRYLQ+PL TL G +ILS + ++ D ++E VD
Sbjct: 832 DKPTLVKYAISLGRYLQDPLLEYITL---GDDILSLTFHEHQKLISNDLVKEVVESAFVD 888
Query: 648 VTNQVGLDINLAIHREWQFAP-LQFISGLGPRKAASLQRSLV-RAGAIFTRKDFVTAHGL 705
+ N VG+DIN ++ R+ + A L+++ GLGPRKA+ + R++ + G++ T + + + L
Sbjct: 889 LVNAVGVDINESV-RDSRLAQTLKYVGGLGPRKASGMLRNIAQKLGSVLTTRSQLIEYEL 947
Query: 706 GKK-VFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQELAKEVYNRDIEGD 763
+ +F+N L++ + ++ + F I++LD TRIHPE Y LA ++A + + D E +
Sbjct: 948 TTRTIFINCSAALKISLN-KSINVKDFEIEILDTTRIHPEDYQLAMKMAADALDMDEESE 1006
Query: 764 LNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQ 823
L++ ++ +E+ + +LL I + + K +L IR ELI GF + R+
Sbjct: 1007 LHEKGGVIKELLENDPSKLNLLNLNDFANQIYKLTHKLKFRSLQAIRLELIQGFAEIRSP 1066
Query: 824 YKEPSQDEEFYMISGETEDTLAEGRVVQATVRRV 857
++ + ++ F++++GE L + V+ AT+ +V
Sbjct: 1067 FRILTNEDAFFILTGEKPQML-KNTVIPATITKV 1099
Score = 200 (75.5 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 49/153 (32%), Positives = 81/153 (52%)
Query: 962 KERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIE 1021
K R I HP ++N +A + L+ + G+ +IRPSS+G SYLT+T KV + ++ H + E
Sbjct: 1202 KTRNIQHPFYRNFNYKQAEEYLAPQNVGDYVIRPSSKGASYLTITWKVGNNLFQHLLVEE 1261
Query: 1022 GGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEV 1081
+ K + GKT +EDLD++ ++I + ++ M+ + KFR+G+ + V
Sbjct: 1262 RSRGR--FKEYIVDGKT-------YEDLDQLAFQHIQVIAKNVTDMVRHPKFREGTLSVV 1312
Query: 1082 DELLRIEKAEFPTRIVYGFGISHEHPGTFILTY 1114
E L P Y F H+ PG F+L +
Sbjct: 1313 HEWLESYTRANPKSSAYVFCYDHKSPGNFLLLF 1345
Score = 54 (24.1 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 29/143 (20%), Positives = 56/143 (39%)
Query: 50 PKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKE-ECLSLLKDLEQNEVXXXXXXXF 108
P +L IS DD+ R + KLDI + ++Y K ++ LE ++
Sbjct: 364 PGSVRELMISEDDVWRIV------KLDIEYHSLYEKRLNTEKIIDSLEIDDELVKDIKTL 417
Query: 109 ERTPTLK-WHKVLWAIHDLD-KKWLLLQKRKSALQSYYKKRYEE---ESRRIYDETRLAL 163
+ ++ H + + + ++ Q RK + + Y++ E ++ + Y T
Sbjct: 418 DSMVAIQDMHDYIQFTYSKEIRQREETQNRKHSKFALYERIRENVLYDAVKAYGITAKEF 477
Query: 164 NQQLFDSISKSLEAAETEREVDD 186
+ + D SK E DD
Sbjct: 478 GENVQDQSSKGFEVPYRIHATDD 500
Score = 46 (21.3 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 10 RKALAGPPTDGESIVDESTWIYNQLL 35
R AL D E + E TW+ N LL
Sbjct: 285 RSALTYIDLDDEELELEKTWVANTLL 310
Score = 41 (19.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 33/157 (21%), Positives = 60/157 (38%)
Query: 736 DDTRIHPESYGLAQELAKEVYNRDIEGDLNDDED---ALEMAIEHVRDRPDLLKTYLLDR 792
+D R P E +E + EG + DDE+ + H R R Y D
Sbjct: 38 EDVRDSPSDSSEESEDDEEEIQKVREGFIVDDEEDEVQTKKRKSHKRKRDKERPHY--DD 95
Query: 793 HIKEKKRENKRETLYLIRRELIHG-FQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQ 851
+ + E E L R G F+ + + E +DE I + + R +
Sbjct: 96 ALDDDDLELLLENSGLKRGSSSSGKFKRLKRKQIEDDEDE----IESQDHQGEQQLRDIF 151
Query: 852 ATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSEL 888
+ V+ + A +++ G + ++D+SD+ + L
Sbjct: 152 SDDEEVEEEAAPRIMDE-FDGFIEEDDFSDEDEQTRL 187
Score = 40 (19.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 442 GPYQRKD---NDITPDEEAAPRVL 462
G Q +D +D +EEAAPR++
Sbjct: 143 GEQQLRDIFSDDEEVEEEAAPRIM 166
Score = 39 (18.8 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 15/57 (26%), Positives = 20/57 (35%)
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKR 595
D+ E+ K + H R E D+ L L ENS + G KR
Sbjct: 69 DEEDEVQTKKRKSHKRKRDKERPHYDDALDDDDLELLLENSGLKRGS--SSSGKFKR 123
>UNIPROTKB|Q3MNT0 [details] [associations]
symbol:SPT6 "Transcription elongation factor SPT6"
species:237561 "Candida albicans SC5314" [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IGI]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] [GO:1900436 "positive regulation of
filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001 SMART:SM00252
CGD:CAL0002923 GO:GO:0005634 GO:GO:0071216 GO:GO:0036180
GO:GO:1900445 Gene3D:3.30.505.10 GO:GO:0006357 GO:GO:0009267
GO:GO:0016788 GO:GO:0006368 EMBL:AP006852 GO:GO:0036170
GO:GO:1900436 GO:GO:0032784 Gene3D:3.30.420.140 eggNOG:COG2183
KO:K11292 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
EMBL:AACQ01000089 RefSeq:XP_715187.1 RefSeq:XP_889033.1
ProteinModelPortal:Q3MNT0 STRING:Q3MNT0 GeneID:3643171
GeneID:3704048 KEGG:cal:CaO19.7136 KEGG:cal:CaO19_7136
Uniprot:Q3MNT0
Length = 1401
Score = 551 (199.0 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 191/754 (25%), Positives = 347/754 (46%)
Query: 127 DKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDD 186
D W ++ K S Y+KR E +I D L ++ +L I K+L++ +++ D
Sbjct: 375 DDVWRIV-KLDIEYHSLYEKRLNTE--KIIDS--LEIDDELVKDI-KTLDSMVAIQDMHD 428
Query: 187 -VDLKFNLHFPPGEVGVDEGQ-----YKRPKRSTKYSSCSKAGLWEVASKFGYXXXXXXX 240
+ ++ E + Y+R + + Y + G+ A +FG
Sbjct: 429 YIQFTYSKEIRQREETQNRKHSKFALYERIRENVLYDAVKAYGI--TAKEFGENVQDQSS 486
Query: 241 XXXXXKMG-DELEDPKETPEEMASNF---KCAMFNSSQAVLQGARHMAAVEISCEPCVRK 296
+DP E+P++M +F + R A EI P +R
Sbjct: 487 KGFEVPYRIHATDDPWESPDDMIERLIQDDEVIFRDEKTARDAVRRTFADEIFYNPKIRH 546
Query: 297 YVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKW-LREKPLRKFEDAQWLLIQKAEEEK 355
VRS + A +S T G ++ID+ FA +K+ + P +L++ E E+
Sbjct: 547 EVRSTYKLYASISVAVTEKGRASIDAHSPFADIKYAINRSPADLIAKPD-VLLRMLEAER 605
Query: 356 LLQVTIKLPEDSLNKLFSDCKEHYL-SDGVSKSAQLWNDQRELILKDALDNFLLPSMVKE 414
L V IK+ F DC + L SDG S ++ WN +R+ +L+ A+ L +
Sbjct: 606 LGLVVIKVETKDFANWF-DCLFNCLKSDGFSDISEKWNQERQAVLRTAISR-LCAVVALN 663
Query: 415 ARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGKPETT 474
+ + + + + L K+ P+ DI + VLA +G G ++
Sbjct: 664 TKEDLRRECERLIASKVRHGLLAKIEQAPFTPYGFDIG----SKANVLALTFGKGDYDSA 719
Query: 475 FV--MLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNL 532
V + G+V F S+N + + K ++ F D P VVV+ N
Sbjct: 720 VVGVYIKHDGKVSR--FFKSTENPSRNRETEDAFKGQLKQF--FDEDETPDVVVVSGYNA 775
Query: 533 SCTSLKDDIYEIIFKMVEEHPRDVGHEMDE-----LSIVYGDESLPRLYENSRISSDQLP 587
+ L D +++ V E+ V E D+ + +++G + RLY+NS + + P
Sbjct: 776 NTKRLHD----VVYNFVSEYGISVKSEFDDGSSQLVKVIWGQDETARLYQNSERAKKEFP 831
Query: 588 GQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVD 647
+ VK A++LGRYLQ+PL TL G +ILS + ++ D ++E VD
Sbjct: 832 DKPTLVKYAISLGRYLQDPLLEYITL---GDDILSLTFHEHQKLISNDLVKEVVESAFVD 888
Query: 648 VTNQVGLDINLAIHREWQFAP-LQFISGLGPRKAASLQRSLV-RAGAIFTRKDFVTAHGL 705
+ N VG+DIN ++ R+ + A L+++ GLGPRKA+ + R++ + G++ T + + + L
Sbjct: 889 LVNAVGVDINESV-RDSRLAQTLKYVGGLGPRKASGMLRNIAQKLGSVLTTRSQLIEYEL 947
Query: 706 GKK-VFVNAVGFLRVRRSGQAASSSQF-IDLLDDTRIHPESYGLAQELAKEVYNRDIEGD 763
+ +F+N L++ + ++ + F I++LD TRIHPE Y LA ++A + + D E +
Sbjct: 948 TTRTIFINCSAALKISLN-KSINVKDFEIEILDTTRIHPEDYQLAMKMAADALDMDEESE 1006
Query: 764 LNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQ 823
L++ ++ +E+ + +LL I + + K +L IR ELI GF + R+
Sbjct: 1007 LHEKGGVIKELLENDPSKLNLLNLNDFANQIYKLTHKLKFRSLQAIRLELIQGFAEIRSP 1066
Query: 824 YKEPSQDEEFYMISGETEDTLAEGRVVQATVRRV 857
++ + ++ F++++GE L + V+ AT+ +V
Sbjct: 1067 FRILTNEDAFFILTGEKPQML-KNTVIPATITKV 1099
Score = 200 (75.5 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 49/153 (32%), Positives = 81/153 (52%)
Query: 962 KERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIE 1021
K R I HP ++N +A + L+ + G+ +IRPSS+G SYLT+T KV + ++ H + E
Sbjct: 1202 KTRNIQHPFYRNFNYKQAEEYLAPQNVGDYVIRPSSKGASYLTITWKVGNNLFQHLLVEE 1261
Query: 1022 GGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEV 1081
+ K + GKT +EDLD++ ++I + ++ M+ + KFR+G+ + V
Sbjct: 1262 RSRGR--FKEYIVDGKT-------YEDLDQLAFQHIQVIAKNVTDMVRHPKFREGTLSVV 1312
Query: 1082 DELLRIEKAEFPTRIVYGFGISHEHPGTFILTY 1114
E L P Y F H+ PG F+L +
Sbjct: 1313 HEWLESYTRANPKSSAYVFCYDHKSPGNFLLLF 1345
Score = 54 (24.1 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 29/143 (20%), Positives = 56/143 (39%)
Query: 50 PKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKE-ECLSLLKDLEQNEVXXXXXXXF 108
P +L IS DD+ R + KLDI + ++Y K ++ LE ++
Sbjct: 364 PGSVRELMISEDDVWRIV------KLDIEYHSLYEKRLNTEKIIDSLEIDDELVKDIKTL 417
Query: 109 ERTPTLK-WHKVLWAIHDLD-KKWLLLQKRKSALQSYYKKRYEE---ESRRIYDETRLAL 163
+ ++ H + + + ++ Q RK + + Y++ E ++ + Y T
Sbjct: 418 DSMVAIQDMHDYIQFTYSKEIRQREETQNRKHSKFALYERIRENVLYDAVKAYGITAKEF 477
Query: 164 NQQLFDSISKSLEAAETEREVDD 186
+ + D SK E DD
Sbjct: 478 GENVQDQSSKGFEVPYRIHATDD 500
Score = 46 (21.3 bits), Expect = 2.8e-64, Sum P(3) = 2.8e-64
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 10 RKALAGPPTDGESIVDESTWIYNQLL 35
R AL D E + E TW+ N LL
Sbjct: 285 RSALTYIDLDDEELELEKTWVANTLL 310
Score = 41 (19.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 33/157 (21%), Positives = 60/157 (38%)
Query: 736 DDTRIHPESYGLAQELAKEVYNRDIEGDLNDDED---ALEMAIEHVRDRPDLLKTYLLDR 792
+D R P E +E + EG + DDE+ + H R R Y D
Sbjct: 38 EDVRDSPSDSSEESEDDEEEIQKVREGFIVDDEEDEVQTKKRKSHKRKRDKERPHY--DD 95
Query: 793 HIKEKKRENKRETLYLIRRELIHG-FQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQ 851
+ + E E L R G F+ + + E +DE I + + R +
Sbjct: 96 ALDDDDLELLLENSGLKRGSSSSGKFKRLKRKQIEDDEDE----IESQDHQGEQQLRDIF 151
Query: 852 ATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSEL 888
+ V+ + A +++ G + ++D+SD+ + L
Sbjct: 152 SDDEEVEEEAAPRIMDE-FDGFIEEDDFSDEDEQTRL 187
Score = 40 (19.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 442 GPYQRKD---NDITPDEEAAPRVL 462
G Q +D +D +EEAAPR++
Sbjct: 143 GEQQLRDIFSDDEEVEEEAAPRIM 166
Score = 39 (18.8 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 15/57 (26%), Positives = 20/57 (35%)
Query: 539 DDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKR 595
D+ E+ K + H R E D+ L L ENS + G KR
Sbjct: 69 DEEDEVQTKKRKSHKRKRDKERPHYDDALDDDDLELLLENSGLKRGS--SSSGKFKR 123
>SGD|S000003348 [details] [associations]
symbol:SPT6 "Nucleosome remodeling protein" species:4932
"Saccharomyces cerevisiae" [GO:0006334 "nucleosome assembly"
evidence=IDA] [GO:0000433 "negative regulation of transcription
from RNA polymerase II promoter by glucose" evidence=IMP]
[GO:0070827 "chromatin maintenance" evidence=IMP] [GO:0000414
"regulation of histone H3-K36 methylation" evidence=IMP;IDA]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=IMP;IPI] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IMP]
[GO:0031491 "nucleosome binding" evidence=IMP;IDA] [GO:0034401
"regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0042393 "histone binding" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IMP] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IMP] [GO:0031564 "transcription antitermination"
evidence=IGI;IMP] [GO:0001073 "DNA binding transcription
antitermination factor activity" evidence=IGI;IMP;IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0071931 "positive regulation of
transcription involved in G1/S phase of mitotic cell cycle"
evidence=IMP] [GO:0060303 "regulation of nucleosome density"
evidence=IMP] [GO:0034728 "nucleosome organization" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016788
"hydrolase activity, acting on ester bonds" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0031440
"regulation of mRNA 3'-end processing" evidence=IGI;IMP]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA]
Pfam:PF00017 InterPro:IPR000980 InterPro:IPR006641
InterPro:IPR017072 PIRSF:PIRSF036947 PROSITE:PS50001 SMART:SM00252
SMART:SM00732 SGD:S000003348 GO:GO:0005739 GO:GO:0005634
EMBL:BK006941 Gene3D:3.30.505.10 GO:GO:0006338 GO:GO:0016788
GO:GO:0034401 GO:GO:0042393 GO:GO:0001073 GO:GO:0031491
GO:GO:0000991 GO:GO:0006334 GO:GO:0043618 GO:GO:0035327
GO:GO:0071931 GO:GO:0001178 GO:GO:0000433 GO:GO:0016973
GO:GO:0032784 GO:GO:0031440 GO:GO:0060303 PDB:3OAK PDBsum:3OAK
Gene3D:3.30.420.140 eggNOG:COG2183 GeneTree:ENSGT00510000047446
KO:K11292 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 PANTHER:PTHR10145
HOGENOM:HOG000193710 OMA:YRKFRKG OrthoDB:EOG47DDQ9 EMBL:M34391
EMBL:Z72899 EMBL:Z72902 PIR:A36468 RefSeq:NP_011631.1 PDB:2L3T
PDB:3PSF PDB:3PSI PDB:3PSJ PDB:3PSK PDBsum:2L3T PDBsum:3PSF
PDBsum:3PSI PDBsum:3PSJ PDBsum:3PSK ProteinModelPortal:P23615
SMR:P23615 DIP:DIP-2630N IntAct:P23615 MINT:MINT-427185
STRING:P23615 PaxDb:P23615 PeptideAtlas:P23615 EnsemblFungi:YGR116W
GeneID:853011 KEGG:sce:YGR116W CYGD:YGR116w
EvolutionaryTrace:P23615 NextBio:972872 Genevestigator:P23615
GermOnline:YGR116W GO:GO:0070827 GO:GO:0000414 Uniprot:P23615
Length = 1451
Score = 440 (159.9 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 172/771 (22%), Positives = 331/771 (42%)
Query: 120 LWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAE 179
LW I LD ++ L +K +Q +Y + + ++ I T NQ + S+
Sbjct: 414 LWDIVSLDIEFHSLVNKKDYVQRFYAELHIDDP--IV--TEYFKNQN-----TASIAELN 464
Query: 180 TEREVDDVDLKFNLHFPPGEVGVDE-GQY-KRPKRSTKYSSCSKAGLWEVASKFGYXXXX 237
+ +++ D L+F E+ ++ G+ K+ +++ Y + L++ S G
Sbjct: 465 SLQDIYDY-LEFKYANEINEMFINHTGKTGKKHLKNSSYEKFKASPLYQAVSDIGISAED 523
Query: 238 XXXXXXXX-KMGDELEDPKETPEEM------ASNFKCAMFNSS-QAVLQGARHMAAVEIS 289
++ ++ P P E+ A++ +F S+ + + + ++E+S
Sbjct: 524 VGENISSQHQIHPPVDHPSSKPVEVIESILNANSGDLQVFTSNTKLAIDTVQKYYSLELS 583
Query: 290 CEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKW-LREKPLRKFEDAQWLLI 348
+R+ VRS F + T G I + +K+ + P+ D + +
Sbjct: 584 KNTKIREKVRSDFSKYYLADVVLTAKGKKEIQKGSLYEDIKYAINRTPMHFRRDPD-VFL 642
Query: 349 QKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYL-SDGVSKSAQLWNDQRELILKDALDNFL 407
+ E E L +++KL S + + L + S A WN+ R+L A+D +
Sbjct: 643 KMVEAESLNLLSVKLHMSSQAQYIEHLFQIALETTNTSDIAIEWNNFRKLAFNQAMDK-I 701
Query: 408 LPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWG 467
+ +E + ++ + + K+ P+ D P P++L+ G
Sbjct: 702 FQDISQEVKDNLTKNCQKLVAKTVRHKFMTKLDQAPFIPNVRD--PK---IPKILSLTCG 756
Query: 468 PGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVL 527
G+ ++ D + + N D+ + + ++ L + QP+ + +
Sbjct: 757 QGRFGADAIIAVYVNRKGDFIRDYKIV---DNPFDKTNPEKFEDTLDNIIQSCQPNAIGI 813
Query: 528 GAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLP 587
N + E++ K R GH + I+Y ++ + Y+NS ++ + P
Sbjct: 814 NGPNPKTQKFYKRLQEVLHKKQIVDSR--GHT---IPIIYVEDEVAIRYQNSERAAQEFP 868
Query: 588 GQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVD 647
+ VK +AL RY+ +PL A L E+ S + P +N L+ ++ +E VD
Sbjct: 869 NKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIHPHQNLLSSEQLSWALETAFVD 926
Query: 648 VTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTAHGLG 706
+ N V +++N A + + L++ISG G RKA +SL R + R+ +T + L
Sbjct: 927 IVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILH 986
Query: 707 KKVFVNAVGFLRVRRSGQAASSSQFI-DLLDDTRIHPESYGLAQELAKEV--YNRDIEGD 763
K +F+N+ GFL + + + D LD TRIHPE Y LA ++A + Y+ D +
Sbjct: 987 KTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPDTIAE 1046
Query: 764 LNDDEDALEMAIEHVRDRPDL---LKTYLLDRHIKEKKREN---KRETLYLIRRELIHGF 817
+++ + IE +R+ PD L++ L+ + +E ++ K L I EL+ GF
Sbjct: 1047 -KEEQGTMSEFIELLREDPDRRAKLESLNLESYAEELEKNTGLRKLNNLNTIVLELLDGF 1105
Query: 818 QDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLES 868
++ RN + DE F ++GE+E T +G ++ V R IC S
Sbjct: 1106 EELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHNDIICTTNS 1156
Score = 214 (80.4 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 50/156 (32%), Positives = 82/156 (52%)
Query: 964 RLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGG 1023
R+I HP + +A L +KE GE +IR SSRG +L +T K+ ++ H DI E
Sbjct: 1252 RVINHPYYFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLDKDLFQHIDIQELE 1311
Query: 1024 KDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDE 1083
K++ + +GK L + + DLD+++ Y+ V L M S KF+ G+K +V +
Sbjct: 1312 KENP-----LALGKVLIVDNQKYNDLDQIIVEYLQNKVRLLNEMTSSEKFKSGTKKDVVK 1366
Query: 1084 LLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTN 1119
+ P + VY F ++H++PG F L + + N
Sbjct: 1367 FIEDYSRVNPNKSVYYFSLNHDNPGWFYLMFKINAN 1402
Score = 55 (24.4 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 302 FMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTI 361
F N ++ C T + + + AG + LR +P + + I K K++ +
Sbjct: 1145 FWHNDII--CTTNSEVECVVNAQRHAGAQ-LR-RPANEIYE-----IGKTYPAKVIYIDY 1195
Query: 362 KLPEDSLNKLFSDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSG 421
++ L D K+ Y+ SK +W+ ++EL +DA + L M+ EAR+ +
Sbjct: 1196 ANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQEL--EDAEEERKL--MMAEARAKRTH 1251
Query: 422 R 422
R
Sbjct: 1252 R 1252
Score = 52 (23.4 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 54 HDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKD 94
+DL+ ++ I + + + L++PFI YR+ S KD
Sbjct: 365 YDLTEFKEAIGNAIKFITKENLEVPFIYAYRRNYISSREKD 405
Score = 47 (21.6 bits), Expect = 6.9e-53, Sum P(4) = 6.9e-53
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 52 EGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDL 95
E H L +D + RF LH+ D P + Y K + + + +L
Sbjct: 423 EFHSLVNKKDYVQRFYAELHI---DDPIVTEYFKNQNTASIAEL 463
Score = 47 (21.6 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 746 GLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPD 783
GL+ + E+Y DI GD +D + ALE+ E + + D
Sbjct: 236 GLSSDKIDEMY--DIFGDGHDYDWALEIENEELENGND 271
Score = 47 (21.6 bits), Expect = 1.8e-11, Sum P(4) = 1.8e-11
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 545 IFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALG 600
I K +H R E D LS ++ L L EN+ + + G KR +G
Sbjct: 75 ISKKRRKHKRREREEDDRLS----EDDLDLLMENAGVERTKASSSSGKFKRLKRVG 126
Score = 41 (19.5 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 819 DWRNQYK--EPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAI 863
D + QY S+D + + E ED E +++ A R + R I
Sbjct: 1208 DVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVI 1254
>UNIPROTKB|I3LVH3 [details] [associations]
symbol:I3LVH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0016788 "hydrolase activity, acting
on ester bonds" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] InterPro:IPR006641 InterPro:IPR017072 SMART:SM00732
GO:GO:0006139 GO:GO:0006357 GO:GO:0016788 GO:GO:0032784
Gene3D:3.30.420.140 GeneTree:ENSGT00510000047446
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 PANTHER:PTHR10145 Ensembl:ENSSSCT00000028350
OMA:GWETENG Uniprot:I3LVH3
Length = 455
Score = 537 (194.1 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 134/453 (29%), Positives = 224/453 (49%)
Query: 283 MAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFED 342
M A++I+ EP VR+ +R F + A ++ PT G +D H K+L+ KP+++ D
Sbjct: 1 MVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRD 60
Query: 343 AQWLLIQKAEEEKLLQVTIKLPEDSLN------KLFSDCKEHYLSDGVSKSAQLWNDQRE 396
Q+L I AE+E LL + I + + F + K+ Y D S Q WN QR
Sbjct: 61 DQFLKICLAEDEGLLTIDISIDMKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRT 120
Query: 397 LILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQ-----RKDNDI 451
+ ++ AL FL M KE ++ + AK +++ + L+N + V PY+ +D+D
Sbjct: 121 MAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDF 180
Query: 452 TPDEEAAP-RVLACCWGPGKPETTF-VMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKND 509
+ + RVL + + F +++ GEV D L T R R+++ +K
Sbjct: 181 MDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKA 240
Query: 510 Q--ERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVY 567
Q E L KF+++ +PHVV + N L +D+ I+ H D G ++ + +
Sbjct: 241 QDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIV------HELDQGQQLSSIGVEL 294
Query: 568 GDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCP 627
D L LY NS+ S + +++AV+L R +Q+PL A +C +IL K P
Sbjct: 295 IDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHP 354
Query: 628 LENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL 687
L+ + +E + ++ N+VG+D+N AI + A +Q++ GLGPRK L + L
Sbjct: 355 LQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKIL 414
Query: 688 VRAGA-IFTRKDFVTAHGLGKKVFVNAVGFLRV 719
+ + +R VT +G KVF+N GFL++
Sbjct: 415 KQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKI 447
>UNIPROTKB|Q74GL1 [details] [associations]
symbol:tex "S1 RNA-binding domain-containing
transcriptional accessory protein" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_951296.1
ProteinModelPortal:Q74GL1 SMR:Q74GL1 GeneID:2687602
KEGG:gsu:GSU0235 PATRIC:22023214 ProtClustDB:CLSK2306712
BioCyc:GSUL243231:GH27-222-MONOMER Uniprot:Q74GL1
Length = 761
Score = 156 (60.0 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 51/193 (26%), Positives = 89/193 (46%)
Query: 563 LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILS 622
+ +V E+ +Y S I+ ++ P V+ A+++ R LQ+PLA + + +
Sbjct: 409 IPVVMVSEAGASVYSASEIAREEFPDLDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQ 468
Query: 623 WKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAAS 682
++ + L ++ V+ N VG+D+N A W A L ++SG+GP A +
Sbjct: 469 YQHDVDQRALKKS-----LDAVVESCVNYVGVDLNTA---SW--ALLSYVSGVGPSLARA 518
Query: 683 LQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHP 742
+ R G R+ + G K F A GFLR+R G+ LD T +HP
Sbjct: 519 IVRHRDEHGPFPARRALMKVPRFGDKAFEQAAGFLRIR-GGEHP--------LDATAVHP 569
Query: 743 ESYGLAQELAKEV 755
E Y + + +A ++
Sbjct: 570 ERYPVVEAMATDL 582
Score = 108 (43.1 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 42/189 (22%), Positives = 79/189 (41%)
Query: 257 TPEEMASNF--KCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTP 314
TPEE F + A L+GA H+ A ++ + R +VR + D + +
Sbjct: 144 TPEEATLPFVDPAGEVPDAAAALEGAGHILAERLADDADARAFVRRLTADQGIFCSRVAA 203
Query: 315 DGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSD 374
D A+ F + + +PL+ + L +++ E+E++L +TI+ P + + L
Sbjct: 204 DRKGAVTKFEMY----YDHREPLKSVPSHRMLAMRRGEKEEVLVLTIEAPTEEI--LAG- 256
Query: 375 CKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKA 434
L ++ A ++ E +DA + PS+ E R RA + + +
Sbjct: 257 -----LRARIAGRASIFRQLLEGAAEDAYKRLIAPSIEVELRLEAKQRADEAAITVFAQN 311
Query: 435 LWNKVSVGP 443
L N + P
Sbjct: 312 LRNLLLAPP 320
Score = 54 (24.1 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 25/108 (23%), Positives = 47/108 (43%)
Query: 818 QDWRNQYKEPSQD--EEFYMISGETEDT----LAEGRVVQATVRRVQGQRAICVLESGLA 871
+D + K+P +D EEF + + T L EG V+Q V V A +
Sbjct: 615 RDIMEELKKPGRDPREEFRTAAFRDDVTEIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQD 674
Query: 872 GMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919
G++ S + + ++ + G ++ K+ S+ R ++ L RE+
Sbjct: 675 GLVHVSHLSVKFV-KDPAEAVRVGQVVQVKVLSVDVQRKRISLSIREA 721
Score = 45 (20.9 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PFIA YRKE
Sbjct: 39 VPFIARYRKE 48
Score = 37 (18.1 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 469 GKPE-TTFVMLDSSGEVVD 486
G PE T +D +GEV D
Sbjct: 143 GTPEEATLPFVDPAGEVPD 161
>TIGR_CMR|GSU_0235 [details] [associations]
symbol:GSU_0235 "S1 RNA binding domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:NP_951296.1 ProteinModelPortal:Q74GL1 SMR:Q74GL1
GeneID:2687602 KEGG:gsu:GSU0235 PATRIC:22023214
ProtClustDB:CLSK2306712 BioCyc:GSUL243231:GH27-222-MONOMER
Uniprot:Q74GL1
Length = 761
Score = 156 (60.0 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 51/193 (26%), Positives = 89/193 (46%)
Query: 563 LSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILS 622
+ +V E+ +Y S I+ ++ P V+ A+++ R LQ+PLA + + +
Sbjct: 409 IPVVMVSEAGASVYSASEIAREEFPDLDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQ 468
Query: 623 WKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAAS 682
++ + L ++ V+ N VG+D+N A W A L ++SG+GP A +
Sbjct: 469 YQHDVDQRALKKS-----LDAVVESCVNYVGVDLNTA---SW--ALLSYVSGVGPSLARA 518
Query: 683 LQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHP 742
+ R G R+ + G K F A GFLR+R G+ LD T +HP
Sbjct: 519 IVRHRDEHGPFPARRALMKVPRFGDKAFEQAAGFLRIR-GGEHP--------LDATAVHP 569
Query: 743 ESYGLAQELAKEV 755
E Y + + +A ++
Sbjct: 570 ERYPVVEAMATDL 582
Score = 108 (43.1 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 42/189 (22%), Positives = 79/189 (41%)
Query: 257 TPEEMASNF--KCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTP 314
TPEE F + A L+GA H+ A ++ + R +VR + D + +
Sbjct: 144 TPEEATLPFVDPAGEVPDAAAALEGAGHILAERLADDADARAFVRRLTADQGIFCSRVAA 203
Query: 315 DGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSD 374
D A+ F + + +PL+ + L +++ E+E++L +TI+ P + + L
Sbjct: 204 DRKGAVTKFEMY----YDHREPLKSVPSHRMLAMRRGEKEEVLVLTIEAPTEEI--LAG- 256
Query: 375 CKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKA 434
L ++ A ++ E +DA + PS+ E R RA + + +
Sbjct: 257 -----LRARIAGRASIFRQLLEGAAEDAYKRLIAPSIEVELRLEAKQRADEAAITVFAQN 311
Query: 435 LWNKVSVGP 443
L N + P
Sbjct: 312 LRNLLLAPP 320
Score = 54 (24.1 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 25/108 (23%), Positives = 47/108 (43%)
Query: 818 QDWRNQYKEPSQD--EEFYMISGETEDT----LAEGRVVQATVRRVQGQRAICVLESGLA 871
+D + K+P +D EEF + + T L EG V+Q V V A +
Sbjct: 615 RDIMEELKKPGRDPREEFRTAAFRDDVTEIGDLKEGMVLQGVVTNVTAFGAFVDVGVHQD 674
Query: 872 GMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919
G++ S + + ++ + G ++ K+ S+ R ++ L RE+
Sbjct: 675 GLVHVSHLSVKFV-KDPAEAVRVGQVVQVKVLSVDVQRKRISLSIREA 721
Score = 45 (20.9 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PFIA YRKE
Sbjct: 39 VPFIARYRKE 48
Score = 37 (18.1 bits), Expect = 6.1e-07, Sum P(4) = 6.1e-07
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 469 GKPE-TTFVMLDSSGEVVD 486
G PE T +D +GEV D
Sbjct: 143 GTPEEATLPFVDPAGEVPD 161
>UNIPROTKB|Q81VF3 [details] [associations]
symbol:BA_0255 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00732 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0006139 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371
HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
ProteinModelPortal:Q81VF3 DNASU:1087362
EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
PATRIC:18778014 ProtClustDB:CLSK2391234
BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
Length = 722
Score = 141 (54.7 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 56/231 (24%), Positives = 100/231 (43%)
Query: 562 ELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREIL 621
E+ + +E+ +Y S ++ ++ P + + AV++GR LQ+PLA + + +
Sbjct: 405 EVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVG 464
Query: 622 SWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAA 681
++ + L +E + + V NQVG+++N A A LQ++SGL A
Sbjct: 465 QYQHDVSQKRL--NESLTFVVETAV---NQVGVNVNTA-----SVALLQYVSGLSKTVAK 514
Query: 682 SLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIH 741
++ G R D LG K + +GFLR+ LD T IH
Sbjct: 515 NIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANP---------LDRTGIH 565
Query: 742 PESYGLAQELAKEV-YNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLD 791
PE Y + L K + ++D G + E+ I + + + + L+D
Sbjct: 566 PEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEISKLSEETGIGEPTLVD 616
Score = 116 (45.9 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 45/195 (23%), Positives = 90/195 (46%)
Query: 255 KETPEEMASNFKCAM--FNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCP 312
KE P + A F A S++ LQGA+ + A +S E R ++R++ V+S+
Sbjct: 139 KEDPNQKAMEFINAEKEVQSAEEALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSVV 198
Query: 313 TPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLF 372
+ + + + E+PL+K + L + + E+E +L+V++ P D ++
Sbjct: 199 KDEEKDEKNIYEMYYDY----EEPLQKVVPHRVLAMNRGEKEDILRVSVVPPVD---EIV 251
Query: 373 SDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYG 432
+ + + D SKSAQ +L ++D + S+ +E R ++ A+ + +
Sbjct: 252 TFLYKKVIRDNDSKSAQYV----KLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFS 307
Query: 433 KALWNKVSVGPYQRK 447
+ L N + P + K
Sbjct: 308 ENLRNLLLQPPMKGK 322
Score = 45 (20.9 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PFIA YRKE
Sbjct: 38 VPFIARYRKE 47
>TIGR_CMR|BA_0255 [details] [associations]
symbol:BA_0255 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575
PROSITE:PS50126 SMART:SM00732 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0006139
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
ProteinModelPortal:Q81VF3 DNASU:1087362
EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
PATRIC:18778014 ProtClustDB:CLSK2391234
BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
Length = 722
Score = 141 (54.7 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 56/231 (24%), Positives = 100/231 (43%)
Query: 562 ELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREIL 621
E+ + +E+ +Y S ++ ++ P + + AV++GR LQ+PLA + + +
Sbjct: 405 EVFYIIVNEAGASVYSASDLAREEFPDLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVG 464
Query: 622 SWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAA 681
++ + L +E + + V NQVG+++N A A LQ++SGL A
Sbjct: 465 QYQHDVSQKRL--NESLTFVVETAV---NQVGVNVNTA-----SVALLQYVSGLSKTVAK 514
Query: 682 SLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIH 741
++ G R D LG K + +GFLR+ LD T IH
Sbjct: 515 NIVAKREEEGKFTKRTDLKKIPRLGAKTYEQCIGFLRILEGANP---------LDRTGIH 565
Query: 742 PESYGLAQELAKEV-YNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLD 791
PE Y + L K + ++D G + E+ I + + + + L+D
Sbjct: 566 PEQYKNVELLLKSLGLSKDDVGQPQLQKSLEEVEISKLSEETGIGEPTLVD 616
Score = 116 (45.9 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 45/195 (23%), Positives = 90/195 (46%)
Query: 255 KETPEEMASNFKCAM--FNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCP 312
KE P + A F A S++ LQGA+ + A +S E R ++R++ V+S+
Sbjct: 139 KEDPNQKAMEFINAEKEVQSAEEALQGAQDIIAEIVSDEAAYRSWIRNVTFRKGVMSSVV 198
Query: 313 TPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLF 372
+ + + + E+PL+K + L + + E+E +L+V++ P D ++
Sbjct: 199 KDEEKDEKNIYEMYYDY----EEPLQKVVPHRVLAMNRGEKEDILRVSVVPPVD---EIV 251
Query: 373 SDCKEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYG 432
+ + + D SKSAQ +L ++D + S+ +E R ++ A+ + +
Sbjct: 252 TFLYKKVIRDNDSKSAQYV----KLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFS 307
Query: 433 KALWNKVSVGPYQRK 447
+ L N + P + K
Sbjct: 308 ENLRNLLLQPPMKGK 322
Score = 45 (20.9 bits), Expect = 3.6e-12, Sum P(3) = 3.6e-12
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PFIA YRKE
Sbjct: 38 VPFIARYRKE 47
>UNIPROTKB|Q88AQ9 [details] [associations]
symbol:PSPTO_0327 "S1 RNA binding domain protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_790177.1
ProteinModelPortal:Q88AQ9 SMR:Q88AQ9 GeneID:1181936
KEGG:pst:PSPTO_0327 PATRIC:19991830 ProtClustDB:CLSK2299216
BioCyc:PSYR223283:GJIX-323-MONOMER Uniprot:Q88AQ9
Length = 773
Score = 159 (61.0 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 60/219 (27%), Positives = 106/219 (48%)
Query: 548 MVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPL 607
+++++P G +M ++ + E+ +Y S +++ + P +++ AV++ R LQ+PL
Sbjct: 399 LIKKYP---GLKMTKVMV---SEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDPL 452
Query: 608 AMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFA 667
A + + + S + ++ ++ + ++ V+ D N VG+D+N A A
Sbjct: 453 AELVKI-----DPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTA-----SVA 502
Query: 668 PLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAAS 727
L ISGL A ++ GA TR LG+K F A GFLRV +G
Sbjct: 503 LLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRLGEKTFEQAAGFLRVM-TGD--- 558
Query: 728 SSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLND 766
+ LD + +HPE+Y L Q +A E +RDI + D
Sbjct: 559 -----NPLDSSAVHPEAYPLVQRIAAET-DRDIRSLIGD 591
Score = 81 (33.6 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 34/153 (22%), Positives = 64/153 (41%)
Query: 246 KMGDEL-EDPKETPEEMASNFKCAMFNSS--QAVLQGARHMAAVEISCEPCVRKYVRSIF 302
++ D L DP TP+ A+ F A + +A L+GA+++ + + + +RS
Sbjct: 123 ELADGLFNDPSLTPDAEAARFVDAEKGVADVKAALEGAKYILMERFAEDASLLDKLRSFL 182
Query: 303 MDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIK 362
AV+S P + F + + ++PL+ + L I + E L +K
Sbjct: 183 KQEAVISARVVPGKEEEGSKFRDY----FEHDEPLKSMPSHRALAIFRGRNEGFLSSALK 238
Query: 363 LPEDSLNKLFSDCK----EHYLSDGVSKSAQLW 391
+ E+ L C+ E + S++A W
Sbjct: 239 VGEE-LPGAMHPCELMIGERFGIQNQSRAADKW 270
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 77 IPFIAMYRKEECLSL----LKDLEQ 97
+PFI+ YRKE SL L+ LE+
Sbjct: 32 VPFISRYRKEVTGSLDDTQLRHLEE 56
Score = 43 (20.2 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 31/130 (23%), Positives = 54/130 (41%)
Query: 809 IRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRA---ICV 865
I +EL +D R ++K EF + +D L G +++ V V A I V
Sbjct: 616 ILQELEKPGRDPRPEFKTA----EFQEGVEDLKD-LQPGMILEGVVTNVTNFGAFVDIGV 670
Query: 866 LESGLAGM-LMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNN 924
+ GL + + E + D R++ + GD++ K+ I R +V L R S+
Sbjct: 671 HQDGLVHISALSEKFIKDPREA-----VKAGDVVKVKVMEIDIPRKRVGLSMRMSDTPGE 725
Query: 925 RYQHCQNLDP 934
+ + P
Sbjct: 726 KIDGARGARP 735
Score = 41 (19.5 bits), Expect = 1.9e-10, Sum P(5) = 1.9e-10
Identities = 12/62 (19%), Positives = 31/62 (50%)
Query: 147 RY--EEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNL-HFPPGEVGVD 203
RY E + RR+ + +L +++ ++ A+T+ ++D+ L + G++ ++
Sbjct: 59 RYLRELDDRRVSILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALE 118
Query: 204 EG 205
G
Sbjct: 119 AG 120
Score = 39 (18.8 bits), Expect = 3.0e-10, Sum P(5) = 3.0e-10
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 207 YKRPKRSTKYSSCSKAGLWEVA 228
YK+ KR TK +AGL E+A
Sbjct: 105 YKQ-KRRTKGQIALEAGLGELA 125
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 400 KDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAA 458
K L++ LP K+ R R K + +E G +++ G + D +TPD EAA
Sbjct: 95 KTRLEDLYLP--YKQKR-----RTKGQIALEAGLG---ELADGLFN--DPSLTPDAEAA 141
>UNIPROTKB|Q721R8 [details] [associations]
symbol:LMOf2365_0917 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 eggNOG:COG2183 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 RefSeq:YP_013519.1
ProteinModelPortal:Q721R8 STRING:Q721R8 GeneID:2798896
KEGG:lmf:LMOf2365_0917 PATRIC:20323050 ProtClustDB:CLSK2391096
Uniprot:Q721R8
Length = 725
Score = 150 (57.9 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 49/185 (26%), Positives = 92/185 (49%)
Query: 569 DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPL 628
+E+ +Y S + ++ P + + AV++GR LQ+PLA + + + ++
Sbjct: 411 NEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVA 470
Query: 629 ENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLV 688
+ L +E + + V NQVG+++N A + LQ+++GL A ++++
Sbjct: 471 QKRL--NETLTFVVETAV---NQVGVNVNTA-----SASLLQYVAGLNKTVANNIRKYRE 520
Query: 689 RAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLA 748
G+ +RK+ LG K + ++GFLR+ G+ + LD T IHPESY A
Sbjct: 521 ENGSFASRKELKKVPRLGAKSYEQSIGFLRILE-GE--------NPLDKTAIHPESYKAA 571
Query: 749 QELAK 753
+++ K
Sbjct: 572 EQIVK 576
Score = 78 (32.5 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 37/175 (21%), Positives = 81/175 (46%)
Query: 272 SSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVV-STCPTPDGDS--AIDSFHQFAG 328
S++A L GA + A +IS EP R+++R+ ++ S + D + +++F
Sbjct: 157 SAEAALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEF-- 214
Query: 329 VKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSA 388
+ + K + L + E+E +L+V +++ D+ K+F E + + S +
Sbjct: 215 -----NEMIGKVASHRILAFNRGEKEDILRVQVQV--DT-TKIFQYLFEKVIQNRNSATR 266
Query: 389 QLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGP 443
E I+ DA F+ P++ +E R ++ + + + + + L K+ + P
Sbjct: 267 PY---VEEAIM-DAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENL-RKLLLQP 316
Score = 53 (23.7 bits), Expect = 4.4e-10, Sum P(3) = 4.4e-10
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 77 IPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFERTPTLKWHKVLWAIHDLDKKWLLLQKR 136
+PFIA YRKE SL ++E ++ FE L+ K I +D++ L +
Sbjct: 36 VPFIARYRKEMTGSL-DEVEIRDIEET----FEYVTKLENRKEE-IIRLIDEQGKLTDEL 89
Query: 137 KSALQSYYKKRYEEESRRIYDETR 160
++A+ K + E+ R Y + +
Sbjct: 90 RAAITKAEKHQALEDLYRPYKQKK 113
Score = 37 (18.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 8 SLRKALAGPPTDGESIV 24
+LRK L PP G+ I+
Sbjct: 308 NLRKLLLQPPLKGKIIL 324
>FB|FBgn0051156 [details] [associations]
symbol:CG31156 species:7227 "Drosophila melanogaster"
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00732 EMBL:AE014297 GO:GO:0006139 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
GeneTree:ENSGT00510000047850 EMBL:AY061151 RefSeq:NP_651070.3
UniGene:Dm.1281 SMR:Q9VCX7 IntAct:Q9VCX7 MINT:MINT-295399
STRING:Q9VCX7 EnsemblMetazoa:FBtr0084277 GeneID:42669
KEGG:dme:Dmel_CG31156 UCSC:CG31156-RA FlyBase:FBgn0051156
InParanoid:Q9VCX7 OrthoDB:EOG4D7WMN GenomeRNAi:42669 NextBio:829972
Uniprot:Q9VCX7
Length = 948
Score = 176 (67.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 70/262 (26%), Positives = 123/262 (46%)
Query: 564 SIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSW 623
SIV +E+ +Y S +++ + P N + AV++ R L +PL+ + + +
Sbjct: 616 SIV--NENGASIYSCSNVAAKEFPKMDTNERSAVSIARRLNDPLSEYVKIEPRHLGVGMY 673
Query: 624 KLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASL 683
+ E LT + V+ + + VG+D+N A + L+ I+GL +KA +
Sbjct: 674 QHDVPEKILTAS-----LNDVVSECVSYVGVDLNTA-----SLSVLKHIAGLSEKKAEKI 723
Query: 684 QRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPE 743
+ G TRKD ++ +G+K FV GF+R+ + Q + LD T +HPE
Sbjct: 724 IEHRTQKGPFKTRKDLLSVRSIGEKSFVQCAGFVRIE---PRSVGGQLQNPLDCTWVHPE 780
Query: 744 SYGLAQELAKEVYNRDIEGDLNDDEDALEMAI--EHVRDRPDLLKTYLLDRHIKEKKREN 801
SY + + + E D++ L+D A +A + +P+L DR K+ K
Sbjct: 781 SYNVVESIVGEC---DLK--LSDVGKAAFIASIKQFASSQPNL------DRIAKQHKLPM 829
Query: 802 KRETLYLI--RRELIHGFQDWR 821
+R L+ +REL+ QD+R
Sbjct: 830 ERLEFLLVALQRELL---QDYR 848
>UNIPROTKB|Q5LKS3 [details] [associations]
symbol:Q5LKS3 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000032 GenomeReviews:CP000032_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_165135.1 ProteinModelPortal:Q5LKS3 SMR:Q5LKS3
GeneID:3196926 KEGG:sil:SPOA0306 PATRIC:23381958
ProtClustDB:CLSK2308454 Uniprot:Q5LKS3
Length = 765
Score = 175 (66.7 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 60/199 (30%), Positives = 98/199 (49%)
Query: 575 LYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTP 634
+Y S +++ + PG +++ AV++ R LQ+PLA + + E S + ++ +
Sbjct: 416 VYSASELAAREFPGLDVSLRGAVSIARRLQDPLAELVKI-----EPKSIGVGQYQHDVDQ 470
Query: 635 DEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPL-QFISGLGPRKAASLQRSLVRAGAI 693
M+E V+ DV N VG+D+N A APL +SGLGP A ++ GA
Sbjct: 471 HRLGQMLEAVIEDVVNAVGVDLNTAS------APLLAHVSGLGPGLAEAIVAHRDMNGAF 524
Query: 694 FTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAK 753
R+D + LG + F GFLR+R G+ + LD + +HPE+Y +A+ +
Sbjct: 525 AARRDLLKVARLGPRAFEQCAGFLRIR-DGK--------EPLDASAVHPEAYEVARRIVG 575
Query: 754 EVYNRDIEGDLNDDEDALE 772
RDI + E AL+
Sbjct: 576 AC-GRDIR-QIMGHEGALK 592
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 251 LEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVST 310
L D K PE +A + +++ L GAR + A ++ + + +R+ A++S
Sbjct: 129 LADRKAEPETLAQAYLSEGVPTTKDALNGARDIVAERLTEDATLLGELRAFLHREAMLSA 188
Query: 311 CPTPDGDSAIDSFHQ-FA-GVKW 331
+ A F FA KW
Sbjct: 189 KVIEGQEQAGAKFSDYFAHSEKW 211
Score = 46 (21.3 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 149 EEESRRIYDETRL-ALNQQ--LFDSISKSLEAAETEREVDDVDLKF 191
E E+RR ET L ++ Q L D +S + AET+ +++D+ L +
Sbjct: 63 ELEARR---ETILGSIRDQGKLTDELSLMIARAETKAQLEDIYLPY 105
Score = 44 (20.5 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PF+A YRKE
Sbjct: 32 VPFVARYRKE 41
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
Identities = 27/131 (20%), Positives = 54/131 (41%)
Query: 333 REKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWN 392
RE L +A L +KAE E L Q + + + ++ +++ +++ A L
Sbjct: 117 RENGLEPLAEAI-LADRKAEPETLAQAYLSEGVPTTKDALNGARD-IVAERLTEDATLLG 174
Query: 393 DQRELILKDALDNFLLPSMVKEARSLMS---GRAKSWLLMEYGKALWNKVSVGPYQRKDN 449
+ R + ++A+ + + ++A + S ++ W +AL +
Sbjct: 175 ELRAFLHREAMLSAKVIEGQEQAGAKFSDYFAHSEKWATTPSHRAL-AMLRAQKEGVVTL 233
Query: 450 DITPDEEAAPR 460
DI PD E A R
Sbjct: 234 DIAPDAEGAAR 244
>TIGR_CMR|SPO_A0306 [details] [associations]
symbol:SPO_A0306 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000032
GenomeReviews:CP000032_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_165135.1
ProteinModelPortal:Q5LKS3 SMR:Q5LKS3 GeneID:3196926
KEGG:sil:SPOA0306 PATRIC:23381958 ProtClustDB:CLSK2308454
Uniprot:Q5LKS3
Length = 765
Score = 175 (66.7 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 60/199 (30%), Positives = 98/199 (49%)
Query: 575 LYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTP 634
+Y S +++ + PG +++ AV++ R LQ+PLA + + E S + ++ +
Sbjct: 416 VYSASELAAREFPGLDVSLRGAVSIARRLQDPLAELVKI-----EPKSIGVGQYQHDVDQ 470
Query: 635 DEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPL-QFISGLGPRKAASLQRSLVRAGAI 693
M+E V+ DV N VG+D+N A APL +SGLGP A ++ GA
Sbjct: 471 HRLGQMLEAVIEDVVNAVGVDLNTAS------APLLAHVSGLGPGLAEAIVAHRDMNGAF 524
Query: 694 FTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAK 753
R+D + LG + F GFLR+R G+ + LD + +HPE+Y +A+ +
Sbjct: 525 AARRDLLKVARLGPRAFEQCAGFLRIR-DGK--------EPLDASAVHPEAYEVARRIVG 575
Query: 754 EVYNRDIEGDLNDDEDALE 772
RDI + E AL+
Sbjct: 576 AC-GRDIR-QIMGHEGALK 592
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 251 LEDPKETPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVST 310
L D K PE +A + +++ L GAR + A ++ + + +R+ A++S
Sbjct: 129 LADRKAEPETLAQAYLSEGVPTTKDALNGARDIVAERLTEDATLLGELRAFLHREAMLSA 188
Query: 311 CPTPDGDSAIDSFHQ-FA-GVKW 331
+ A F FA KW
Sbjct: 189 KVIEGQEQAGAKFSDYFAHSEKW 211
Score = 46 (21.3 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 149 EEESRRIYDETRL-ALNQQ--LFDSISKSLEAAETEREVDDVDLKF 191
E E+RR ET L ++ Q L D +S + AET+ +++D+ L +
Sbjct: 63 ELEARR---ETILGSIRDQGKLTDELSLMIARAETKAQLEDIYLPY 105
Score = 44 (20.5 bits), Expect = 4.2e-09, Sum P(4) = 4.2e-09
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PF+A YRKE
Sbjct: 32 VPFVARYRKE 41
Score = 40 (19.1 bits), Expect = 2.6e-08, Sum P(4) = 2.6e-08
Identities = 27/131 (20%), Positives = 54/131 (41%)
Query: 333 REKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKEHYLSDGVSKSAQLWN 392
RE L +A L +KAE E L Q + + + ++ +++ +++ A L
Sbjct: 117 RENGLEPLAEAI-LADRKAEPETLAQAYLSEGVPTTKDALNGARD-IVAERLTEDATLLG 174
Query: 393 DQRELILKDALDNFLLPSMVKEARSLMS---GRAKSWLLMEYGKALWNKVSVGPYQRKDN 449
+ R + ++A+ + + ++A + S ++ W +AL +
Sbjct: 175 ELRAFLHREAMLSAKVIEGQEQAGAKFSDYFAHSEKWATTPSHRAL-AMLRAQKEGVVTL 233
Query: 450 DITPDEEAAPR 460
DI PD E A R
Sbjct: 234 DIAPDAEGAAR 244
>UNIPROTKB|Q8E8N3 [details] [associations]
symbol:tex "Transcriptional accessory protein Tex"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 160 (61.4 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 61/233 (26%), Positives = 104/233 (44%)
Query: 521 QPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSR 580
Q H V L A+ S + D K+ E + +L+ V E+ +Y S
Sbjct: 375 QMHKVELIAIGNGTASRETD------KLAAELIASLKDSQPQLTKVMVSEAGASVYSASE 428
Query: 581 ISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGM 640
+++ + P +++ AV++ R LQ+PLA + + E S + ++ ++ +
Sbjct: 429 LAALEFPELDVSIRGAVSIARRLQDPLAELVKI-----EPKSIGVGQYQHDVSQSQLSSS 483
Query: 641 IEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFV 700
+E V+ D N VG+D+N+A L ++GL A ++ GA RK+ +
Sbjct: 484 LEAVVEDCVNGVGVDLNMA-----SVPLLSQVAGLNKTLAKNVVDYRDANGAFKNRKELL 538
Query: 701 TAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAK 753
LG K F A GFLR+R LD + +HPE+Y L + +AK
Sbjct: 539 KVPRLGPKAFEQAAGFLRIRHGDNP---------LDMSAVHPEAYSLVETIAK 582
Score = 53 (23.7 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 55 DLSISRDDIMRFLDLLHLQKLDIPFIAMYRKE 86
+L++ + +DLL +PF+A YRKE
Sbjct: 11 ELNVREHQVTATIDLLD-NGATVPFVARYRKE 41
Score = 49 (22.3 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 19/94 (20%), Positives = 42/94 (44%)
Query: 268 AMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFA 327
A F+ ++AVL+GAR++ + + + + VR N+V+ + + F +
Sbjct: 148 AGFSDTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDY- 206
Query: 328 GVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTI 361
+ +PL K + L + + E L +++
Sbjct: 207 ---FEHNEPLAKVPSHRALAMLRGRNEGFLSLSM 237
Score = 40 (19.1 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 179 ETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGL 224
E +RE+D D K L D +PKR TK +AGL
Sbjct: 84 ELQREIDGADSKTRLE--------DLYLPFKPKRRTKGQIAIEAGL 121
>TIGR_CMR|SO_4629 [details] [associations]
symbol:SO_4629 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 160 (61.4 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 61/233 (26%), Positives = 104/233 (44%)
Query: 521 QPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSR 580
Q H V L A+ S + D K+ E + +L+ V E+ +Y S
Sbjct: 375 QMHKVELIAIGNGTASRETD------KLAAELIASLKDSQPQLTKVMVSEAGASVYSASE 428
Query: 581 ISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGM 640
+++ + P +++ AV++ R LQ+PLA + + E S + ++ ++ +
Sbjct: 429 LAALEFPELDVSIRGAVSIARRLQDPLAELVKI-----EPKSIGVGQYQHDVSQSQLSSS 483
Query: 641 IEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFV 700
+E V+ D N VG+D+N+A L ++GL A ++ GA RK+ +
Sbjct: 484 LEAVVEDCVNGVGVDLNMA-----SVPLLSQVAGLNKTLAKNVVDYRDANGAFKNRKELL 538
Query: 701 TAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAK 753
LG K F A GFLR+R LD + +HPE+Y L + +AK
Sbjct: 539 KVPRLGPKAFEQAAGFLRIRHGDNP---------LDMSAVHPEAYSLVETIAK 582
Score = 53 (23.7 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 55 DLSISRDDIMRFLDLLHLQKLDIPFIAMYRKE 86
+L++ + +DLL +PF+A YRKE
Sbjct: 11 ELNVREHQVTATIDLLD-NGATVPFVARYRKE 41
Score = 49 (22.3 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 19/94 (20%), Positives = 42/94 (44%)
Query: 268 AMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFA 327
A F+ ++AVL+GAR++ + + + + VR N+V+ + + F +
Sbjct: 148 AGFSDTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDY- 206
Query: 328 GVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTI 361
+ +PL K + L + + E L +++
Sbjct: 207 ---FEHNEPLAKVPSHRALAMLRGRNEGFLSLSM 237
Score = 40 (19.1 bits), Expect = 7.2e-08, Sum P(4) = 7.2e-08
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 179 ETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYSSCSKAGL 224
E +RE+D D K L D +PKR TK +AGL
Sbjct: 84 ELQREIDGADSKTRLE--------DLYLPFKPKRRTKGQIAIEAGL 121
>TIGR_CMR|CPS_4965 [details] [associations]
symbol:CPS_4965 "putative transcription accessory protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_271604.1 ProteinModelPortal:Q47UB9 SMR:Q47UB9
STRING:Q47UB9 GeneID:3522134 KEGG:cps:CPS_4965 PATRIC:21472723
BioCyc:CPSY167879:GI48-4966-MONOMER Uniprot:Q47UB9
Length = 796
Score = 157 (60.3 bits), Expect = 1.0e-07, Sum P(4) = 1.0e-07
Identities = 68/297 (22%), Positives = 136/297 (45%)
Query: 507 KNDQERLLKFMMDH-QPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSI 565
+N ++ L+ +++ + H V L A+ S + D +++ ++++ D +L+
Sbjct: 364 QNHWDKSLRTLVNICRQHKVELVAIGNGTGSRESD--KLVAEVIQLFKAD--ESKVQLTK 419
Query: 566 VYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKL 625
+ E+ +Y S ++++ P +++ AV++ R LQ+PLA + + P + I +
Sbjct: 420 MVVSEAGASVYSASEFAANEFPDLDVSLRGAVSIARRLQDPLAELVKI-DP-KAI---GV 474
Query: 626 CPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQR 685
++ ++ + ++ V+ D N VG+D+N A A L +SGL A ++
Sbjct: 475 GQYQHDVSQSQLSKTLDDVVEDCVNAVGVDLNSA-----SAALLTRVSGLNKTMAGNIVA 529
Query: 686 SLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESY 745
G RK LG K F A GFLR+ LD + +HPESY
Sbjct: 530 FRDSQGRFTNRKQLKKVARLGPKAFEQAAGFLRITNGDNP---------LDQSALHPESY 580
Query: 746 GLAQELAKEVYNRDIEGDLNDDEDALEMAIEHVRDRPDLLKTYLLDRHIKEKKRENK 802
+ +++ ++ D+ LN++E + I D D+ + + D IKE + ++
Sbjct: 581 PVVEKILSQL-QLDVSKVLNNNEQLQSLDITQFTDN-DIGEITIKDI-IKELAKPSR 634
Score = 52 (23.4 bits), Expect = 1.0e-07, Sum P(4) = 1.0e-07
Identities = 25/121 (20%), Positives = 51/121 (42%)
Query: 257 TPEEMASNFKCAMFNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPTPDG 316
T E +A + A F+ +AVL+GA ++ A S + + +RS + A +++
Sbjct: 137 TTEAVAFINETAGFSDVKAVLEGASYILAERFSEDANLLAKLRSHLLKQAHLASKLVKGQ 196
Query: 317 DSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCK 376
+ A F + + + LR + L + + E LQ+ I + F+ +
Sbjct: 197 ERAGAKFRDY----FEHSEKLRTVPSHRMLAMLRGRNEGFLQLNIDVDPGQTITTFNSAE 252
Query: 377 E 377
+
Sbjct: 253 Q 253
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(4) = 1.0e-07
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 207 YKRPKRSTKYSSCSKAGLWEVASK 230
YK PKR TK ++AG+ +A+K
Sbjct: 105 YK-PKRRTKGKIANEAGITPLANK 127
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(4) = 1.0e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 55 DLSISRDDIMRFLDLLHLQKLDIPFIAMYRKE 86
+L+++ I + LL +PFIA YRKE
Sbjct: 11 ELNVNAVQINAAITLLD-DGATVPFIARYRKE 41
>UNIPROTKB|E1C8S3 [details] [associations]
symbol:SRBD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 GeneTree:ENSGT00510000047850
EMBL:AADN02011981 EMBL:AADN02011982 IPI:IPI00579558
ProteinModelPortal:E1C8S3 Ensembl:ENSGALT00000016234 Uniprot:E1C8S3
Length = 990
Score = 104 (41.7 bits), Expect = 7.5e-06, Sum P(4) = 7.5e-06
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 563 LSIVYG--DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREI 620
L +VY E+ +Y S +S ++P N++ AV++ R +Q+PLA + + P + I
Sbjct: 614 LDVVYCIVSEAGASIYSVSPEASKEMPDLDPNLRSAVSIARRVQDPLAELVKI-EP-KHI 671
Query: 621 LSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKA 680
+ ++ ++ ++ V+ + + VG+DIN+ L+ I+GL +A
Sbjct: 672 ---GVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSE-----ILLRHIAGLNATRA 723
Query: 681 ASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLR 718
++ + G R+ GLG K F GF+R
Sbjct: 724 RNIIEWREKNGPFINREQLKEVKGLGPKTFQQCAGFIR 761
Score = 74 (31.1 bits), Expect = 7.5e-06, Sum P(4) = 7.5e-06
Identities = 34/155 (21%), Positives = 65/155 (41%)
Query: 293 CVRKYVRSIFMDNAVVSTCPTPDGDSAIDSF---HQFAGVKWLREKPLRKFEDAQWLLIQ 349
C ++Y I + +A+ + ID F H+F+ ++ + Q L I
Sbjct: 385 CQQRY---ICIQSALAKVSSKNSNEKDIDKFQLYHEFSC-------NIKNIQHHQILAIN 434
Query: 350 KAEEEKLLQVTIKLPEDSLNKLFSDC-KEHYLSDGVSKSAQLWNDQRELILKDALDNFLL 408
+ E K+L V + +P+ N+ C E + K +L R + +DA +
Sbjct: 435 RGENLKILTVKVNIPDGVKNEFCWWCVNERWRPKQFLKP-ELMRILRNSV-EDAYRRLIY 492
Query: 409 PSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGP 443
P + +E RS ++ A+ +M +G+ L + P
Sbjct: 493 PLLCREFRSKLTSDAEKESVMMFGRNLRQLLLTSP 527
Score = 61 (26.5 bits), Expect = 7.5e-06, Sum P(4) = 7.5e-06
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 720 RRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDALEMAIE 776
++S S+S + LD T IHPESY +A + E +D + + I+
Sbjct: 802 KKSKPTPSASYLPNPLDQTCIHPESYSIAMRFLSFIGGNTNEIGKSDMQQKVNAVIQ 858
Score = 50 (22.7 bits), Expect = 7.5e-06, Sum P(4) = 7.5e-06
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 68 DLLHLQKLD--IPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFE-RTPTLKWHKVL 120
+L+ L K + IPFI YRKE L+ +LE + + E RT K H ++
Sbjct: 225 NLIRLFKEENTIPFIVRYRKE----LINNLEADALREVQQTLEELRTVAKKTHTMI 276
>UNIPROTKB|Q60A39 [details] [associations]
symbol:MCA1032 "S1 RNA binding domain protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE017282
GenomeReviews:AE017282_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_113508.1
ProteinModelPortal:Q60A39 SMR:Q60A39 GeneID:3102226
KEGG:mca:MCA1032 PATRIC:22605872 Uniprot:Q60A39
Length = 735
Score = 144 (55.7 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 50/218 (22%), Positives = 105/218 (48%)
Query: 543 EIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRY 602
+++ +++ HP ++G ++ V E+ +Y S +++ + P +++ AV++ R
Sbjct: 363 QLVADLMQRHP-ELG-----VTRVVVSEAGASVYSASELAAQEFPELDVSLRGAVSIARR 416
Query: 603 LQNPLAMVATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHR 662
LQ+PLA + + + S + ++ + + ++ V+ D N VG+D+N A
Sbjct: 417 LQDPLAELVKI-----DPKSIGVGQYQHDVNQAQLGRTLDAVVEDCVNAVGVDVNTA--- 468
Query: 663 EWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRS 722
+ L+++SGL P ++ + G R+ LG K F A GFLR+ +
Sbjct: 469 --SVSLLRYVSGLSPSLGRNIVEYRNQHGPFANREQLRQVSRLGPKAFEQAAGFLRIA-N 525
Query: 723 GQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDI 760
G+ LD + +HPE+Y + +++ + +DI
Sbjct: 526 GEHP--------LDASAVHPEAYPVVEKIVRRT-GKDI 554
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 77 IPFIAMYRKE 86
+PFIA YRKE
Sbjct: 1 MPFIARYRKE 10
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 209 RPKRSTKYSSCSKAGLWEVA 228
RP+R TK +AGL +A
Sbjct: 75 RPRRRTKAQIAREAGLEPLA 94
>UNIPROTKB|F1S5K6 [details] [associations]
symbol:SRBD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] InterPro:IPR006641 SMART:SM00732
GO:GO:0006139 GO:GO:0016788 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 Gene3D:1.10.10.650
InterPro:IPR023319 GeneTree:ENSGT00510000047850 EMBL:CU582919
EMBL:CU928258 EMBL:CU928384 Ensembl:ENSSSCT00000009247 OMA:EELRXSA
Uniprot:F1S5K6
Length = 827
Score = 113 (44.8 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 40/161 (24%), Positives = 77/161 (47%)
Query: 563 LSIVYG--DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREI 620
L +VY E+ +Y S ++ ++PG N++ AV++ R +Q+PLA + + P + I
Sbjct: 609 LDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKI-EP-KHI 666
Query: 621 LSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKA 680
+ ++ ++ ++ V+ + + VG+DIN+ L+ I+GL +A
Sbjct: 667 ---GVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSE-----VLLRHIAGLNANRA 718
Query: 681 ASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRR 721
++ + G R+ GLG K F GF+RV +
Sbjct: 719 KNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFIRVNQ 759
Score = 61 (26.5 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 31/152 (20%), Positives = 62/152 (40%)
Query: 293 CVRKYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAE 352
C +Y+ I A VS+ + D +D F + +R + Q L I + E
Sbjct: 380 CQNRYI-CIQSSLAKVSSKKVNEKD--VDKFQLYQNFSC----NIRNIQHHQILAINRGE 432
Query: 353 EEKLLQVTIKLPEDSLNKLFSDC-KEHYLSDGVSKSAQLWNDQRELILKDALDNFLLPSM 411
K+L V + + + N+ C + + G ++ +L L D+ + P +
Sbjct: 433 NLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARP-ELMKILYSS-LDDSFKRLIYPLL 490
Query: 412 VKEARSLMSGRAKSWLLMEYGKALWNKVSVGP 443
+E R+ ++ A+ +M +G+ L + P
Sbjct: 491 CREFRAKLTSDAEKESVMMFGRNLRQLLLTSP 522
Score = 52 (23.4 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 735 LDDTRIHPESYGLA 748
LD T IHPESY +A
Sbjct: 812 LDQTCIHPESYDIA 825
Score = 42 (19.8 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 77 IPFIAMYRKEECLSLLKDLEQNEVXXXXXXXFE-RTPTLKWHKVLWAI 123
IPFI YRKE L+ +L+ + + E R K H + I
Sbjct: 231 IPFIIRYRKE----LINNLDADSLREVRQTLEELRAVAKKTHSTIQKI 274
>RGD|1562788 [details] [associations]
symbol:Srbd1 "S1 RNA binding domain 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0016788 "hydrolase activity, acting on ester bonds"
evidence=IEA] InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575
PROSITE:PS50126 SMART:SM00732 RGD:1562788 GO:GO:0006139
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 OrthoDB:EOG44BB1H
GeneTree:ENSGT00510000047850 IPI:IPI00767684
ProteinModelPortal:D4A9B0 Ensembl:ENSRNOT00000019894
UCSC:RGD:1562788 Uniprot:D4A9B0
Length = 612
Score = 111 (44.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 40/161 (24%), Positives = 76/161 (47%)
Query: 563 LSIVYG--DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREI 620
L +VY E+ +Y S ++ ++PG N++ AV++ R +Q+PLA + P + I
Sbjct: 245 LDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKF-DP-KHI 302
Query: 621 LSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKA 680
+ ++ ++ ++ V+ + + VG+DIN+ L+ I+GL +A
Sbjct: 303 ---GVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSE-----VLLRHIAGLNANRA 354
Query: 681 ASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRR 721
++ + G R+ GLG K F GF+RV +
Sbjct: 355 KNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFVRVNQ 395
Score = 63 (27.2 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 22/108 (20%), Positives = 47/108 (43%)
Query: 337 LRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDC-KEHYLSDGVSKSAQLWNDQR 395
+R Q L I + E K+L V + + + N+ C + + G ++ +L
Sbjct: 53 IRNIHHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARP-ELMKILH 111
Query: 396 ELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGP 443
L D+ ++P + +E R+ ++ A+ +M +G+ L + P
Sbjct: 112 NS-LDDSFKRLIVPLLCRELRAKLTSDAEKQSVMMFGQNLRQLLLTSP 158
>UNIPROTKB|J9P9N1 [details] [associations]
symbol:SRBD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016788 "hydrolase activity, acting on ester
bonds" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] InterPro:IPR006641 SMART:SM00732
GO:GO:0006139 GO:GO:0016788 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 Gene3D:1.10.10.650
InterPro:IPR023319 GeneTree:ENSGT00510000047850 EMBL:AAEX03007486
Ensembl:ENSCAFT00000049409 Uniprot:J9P9N1
Length = 942
Score = 112 (44.5 bits), Expect = 0.00088, Sum P(4) = 0.00087
Identities = 39/161 (24%), Positives = 77/161 (47%)
Query: 563 LSIVYG--DESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREI 620
L +VY E+ +Y S ++ ++PG N++ AV++ R +Q+PLA + + P + I
Sbjct: 630 LDVVYCIVSEAGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKI-EP-KHI 687
Query: 621 LSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKA 680
+ ++ ++ ++ V+ + + VG+DIN+ L+ I+GL +A
Sbjct: 688 ---GVGMYQHDVSQTLLKATLDSVVEECVSFVGVDINICSE-----VLLRHIAGLNANRA 739
Query: 681 ASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRR 721
++ + G R+ GLG K F GF+R+ +
Sbjct: 740 KNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFIRINQ 780
Score = 59 (25.8 bits), Expect = 0.00088, Sum P(4) = 0.00087
Identities = 21/108 (19%), Positives = 47/108 (43%)
Query: 337 LRKFEDAQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDC-KEHYLSDGVSKSAQLWNDQR 395
+R + Q L I + E K+L V + + + N+ C + + G ++ +L
Sbjct: 438 IRNIQHHQILAINRGENLKILTVKVNISDGVKNEFCRWCIQNRWRPRGFARP-ELMKILH 496
Query: 396 ELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGP 443
L D+ + P + +E R+ ++ A+ ++ +G+ L + P
Sbjct: 497 NS-LDDSFKRLIYPLLCREFRAKLTSDAEKESVLMFGRNLRQLLLTSP 543
Score = 54 (24.1 bits), Expect = 0.00088, Sum P(4) = 0.00087
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 735 LDDTRIHPESYGLAQELAK-------EVYNRDIEGDLND--DEDALEMAIEHVR 779
LD T IHPESY +A E+ ++E +N ++D +E E ++
Sbjct: 834 LDQTCIHPESYDIAMRFLSFFRGTLCEIGKPEMEQKINSFLEKDGIEKIAESLQ 887
Score = 41 (19.5 bits), Expect = 0.00088, Sum P(4) = 0.00087
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 77 IPFIAMYRKE 86
IPFI YRKE
Sbjct: 252 IPFIIRYRKE 261
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1344 1196 0.00097 123 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 633 (67 KB)
Total size of DFA: 568 KB (2256 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 107.77u 0.17s 107.94t Elapsed: 00:00:06
Total cpu time: 107.79u 0.17s 107.96t Elapsed: 00:00:06
Start: Fri May 10 21:26:17 2013 End: Fri May 10 21:26:23 2013