Query 039337
Match_columns 1344
No_of_seqs 567 out of 2906
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3psi_A Transcription elongatio 100.0 5E-231 2E-235 2210.3 64.3 1074 9-1157 97-1210(1219)
2 3psf_A Transcription elongatio 100.0 3E-174 9E-179 1660.1 57.5 893 9-971 100-1030(1030)
3 3bzc_A TEX; helix-turn-helix, 100.0 9E-140 3E-144 1314.6 60.1 701 58-920 20-727 (785)
4 3or8_A Transcription elongatio 100.0 1.1E-65 3.6E-70 544.3 24.0 189 962-1155 2-192 (197)
5 2xp1_A SPT6; transcription, IW 100.0 2.1E-50 7E-55 424.3 18.4 174 958-1152 4-177 (178)
6 3aev_A Translation initiation 99.5 6.4E-15 2.2E-19 165.7 1.8 185 844-1086 9-200 (275)
7 2k4k_A GSP13, general stress p 99.3 3.6E-12 1.2E-16 128.2 10.6 78 842-920 3-80 (130)
8 1luz_A Protein K3, protein K2; 99.3 3.5E-12 1.2E-16 119.4 7.1 75 842-919 7-84 (88)
9 2khj_A 30S ribosomal protein S 99.3 5.5E-12 1.9E-16 123.1 8.8 77 842-919 27-103 (109)
10 2k52_A Uncharacterized protein 99.3 1.3E-11 4.5E-16 113.6 10.7 72 843-919 2-73 (80)
11 1kl9_A Eukaryotic translation 99.3 7.3E-12 2.5E-16 132.6 9.7 75 844-919 13-89 (182)
12 2khi_A 30S ribosomal protein S 99.2 1.8E-11 6.2E-16 120.5 10.6 78 842-919 26-103 (115)
13 2a19_A EIF-2- alpha, eukaryoti 99.2 1.6E-11 5.4E-16 129.4 10.0 74 845-919 14-89 (175)
14 1a81_A SYK kinase; complex (tr 99.2 8.4E-11 2.9E-15 131.8 15.9 172 966-1153 3-240 (254)
15 2eqs_A ATP-dependent RNA helic 99.2 2.6E-11 8.8E-16 117.1 9.8 79 840-920 6-87 (103)
16 2cqo_A Nucleolar protein of 40 99.2 2E-11 6.7E-16 120.9 8.1 78 842-920 18-98 (119)
17 2oq1_A Tyrosine-protein kinase 99.2 3.4E-10 1.1E-14 126.9 18.1 172 966-1153 4-241 (254)
18 1q8k_A Eukaryotic translation 99.0 4.3E-10 1.5E-14 128.1 10.2 77 842-919 9-87 (308)
19 1wi5_A RRP5 protein homolog; S 99.0 2.5E-10 8.5E-15 113.1 6.5 84 840-923 15-99 (119)
20 3arc_U Photosystem II 12 kDa e 98.9 4.5E-10 1.6E-14 106.1 3.6 61 651-720 15-78 (97)
21 3cw2_C Translation initiation 98.9 7.3E-10 2.5E-14 124.3 3.9 78 841-919 6-85 (266)
22 2shp_A SHP-2, SYP, SHPTP-2; ty 98.8 1.7E-08 5.9E-13 124.7 14.7 171 966-1153 2-201 (525)
23 3go5_A Multidomain protein wit 98.8 7.4E-09 2.5E-13 117.3 10.2 71 841-920 147-218 (285)
24 1go3_E DNA-directed RNA polyme 98.8 1E-08 3.5E-13 109.6 10.2 78 843-922 78-171 (187)
25 1s5l_U Photosystem II 12 kDa e 98.8 3.3E-09 1.1E-13 104.4 5.3 63 652-723 53-118 (134)
26 4fbn_A 1-phosphatidylinositol 98.8 5.1E-08 1.7E-12 108.6 15.6 174 967-1154 3-202 (246)
27 3cdi_A Polynucleotide phosphor 98.8 1.4E-09 4.8E-14 136.8 2.0 117 799-919 575-698 (723)
28 1y14_B B16, RPB7, DNA-directed 98.7 1.6E-08 5.6E-13 106.4 9.3 102 804-918 49-165 (171)
29 2nn6_I 3'-5' exoribonuclease C 98.7 1.3E-08 4.6E-13 110.1 8.7 79 842-921 77-165 (209)
30 2b8k_G B16, DNA-directed RNA p 98.7 1.6E-08 5.6E-13 109.7 9.1 73 844-919 81-166 (215)
31 4aid_A Polyribonucleotide nucl 98.7 1.9E-09 6.6E-14 134.9 0.0 77 842-920 633-709 (726)
32 4ayb_E DNA-directed RNA polyme 98.7 3.8E-08 1.3E-12 104.5 9.6 78 843-921 78-169 (180)
33 2duy_A Competence protein come 98.7 9.7E-09 3.3E-13 93.1 4.2 70 641-719 6-75 (75)
34 3m7n_A Putative uncharacterize 98.7 2.9E-08 9.8E-13 105.2 7.6 73 842-921 54-136 (179)
35 2c35_B Human RPB7, DNA-directe 98.6 6.2E-08 2.1E-12 102.1 8.0 73 844-919 79-166 (172)
36 1e3p_A Guanosine pentaphosphat 98.5 3.9E-09 1.3E-13 133.2 -3.5 76 842-919 663-742 (757)
37 2je6_I RRP4, exosome complex R 98.5 1.4E-07 4.9E-12 104.8 8.6 78 842-921 70-150 (251)
38 3h0g_G DNA-directed RNA polyme 98.5 7.4E-08 2.5E-12 101.5 5.0 74 843-919 81-167 (172)
39 2ozo_A Tyrosine-protein kinase 98.4 2.3E-06 8E-11 107.6 18.4 171 967-1153 7-243 (613)
40 2ba0_A Archeal exosome RNA bin 98.4 4E-07 1.4E-11 100.0 9.5 78 843-921 54-131 (229)
41 2z0s_A Probable exosome comple 98.4 2.7E-07 9.2E-12 102.0 7.3 78 843-921 63-143 (235)
42 2edu_A Kinesin-like protein KI 98.4 3.9E-07 1.3E-11 87.0 6.0 58 651-713 29-86 (98)
43 4fl3_A Tyrosine-protein kinase 98.3 6.4E-06 2.2E-10 104.0 17.6 173 965-1153 10-248 (635)
44 2b3o_A Tyrosine-protein phosph 98.3 1.9E-06 6.7E-11 106.5 12.0 168 968-1152 2-197 (532)
45 3ps5_A Tyrosine-protein phosph 98.3 2.4E-06 8.3E-11 107.0 11.8 168 969-1153 3-198 (595)
46 2i5h_A Hypothetical protein AF 98.2 1.5E-06 5E-11 91.3 5.9 50 658-713 128-185 (205)
47 2id0_A Exoribonuclease 2; RNAs 98.0 8.4E-06 2.9E-10 102.6 9.2 73 845-917 557-643 (644)
48 1r1p_A GRB2-related adaptor pr 98.0 2.4E-05 8.4E-10 74.7 9.7 82 964-1058 5-87 (100)
49 1vhx_A Putative holliday junct 97.9 1.2E-05 4E-10 82.6 7.5 102 460-582 4-110 (150)
50 1rja_A Tyrosine-protein kinase 97.9 1.9E-05 6.4E-10 75.5 8.3 81 967-1059 1-84 (100)
51 1jyr_A Growth factor receptor- 97.9 3.5E-05 1.2E-09 73.1 10.0 80 967-1059 2-83 (96)
52 3go5_A Multidomain protein wit 97.9 1.6E-05 5.5E-10 90.0 9.0 70 843-919 66-137 (285)
53 1lkk_A Human P56 tyrosine kina 97.9 5.8E-05 2E-09 72.6 10.6 83 966-1059 2-91 (105)
54 1hh2_P NUSA, N utilization sub 97.8 3.8E-05 1.3E-09 88.5 9.8 68 844-919 132-201 (344)
55 2eo3_A CRK-like protein; phosp 97.8 4.1E-05 1.4E-09 74.6 8.6 80 966-1058 17-97 (111)
56 2cia_A Cytoplasmic protein NCK 97.8 4.6E-05 1.6E-09 73.1 8.6 78 967-1058 4-83 (102)
57 3ayh_B DNA-directed RNA polyme 97.8 3.2E-05 1.1E-09 83.5 8.3 64 844-908 79-160 (203)
58 2ekx_A Cytoplasmic tyrosine-pr 97.8 4.7E-05 1.6E-09 74.0 8.6 84 964-1059 7-97 (110)
59 3k2m_A Proto-oncogene tyrosine 97.8 9.3E-05 3.2E-09 72.1 10.7 81 966-1058 3-84 (112)
60 1ju5_A CRK; CRK, SH2, SH3, ada 97.8 7.2E-05 2.5E-09 72.6 9.9 89 969-1059 1-96 (109)
61 2dlz_A Protein VAV-2; RHO fami 97.8 7E-05 2.4E-09 73.8 9.2 86 961-1059 9-95 (118)
62 3us4_A Megakaryocyte-associate 97.7 0.00012 4.1E-09 69.5 10.3 81 966-1059 3-84 (98)
63 2ecd_A Tyrosine-protein kinase 97.7 6E-05 2E-09 74.4 8.4 84 964-1059 12-96 (119)
64 1d4t_A T cell signal transduct 97.7 7.6E-05 2.6E-09 71.7 8.7 87 966-1059 2-90 (104)
65 2hdv_A SH2-B PH domain contain 97.7 0.00012 4E-09 71.3 10.1 81 965-1058 6-90 (111)
66 2iug_A Phosphatidylinositol 3- 97.7 8.8E-05 3E-09 73.3 9.3 82 965-1059 8-91 (120)
67 1i3z_A EWS/FLI1 activated tran 97.7 9.6E-05 3.3E-09 70.8 9.1 86 967-1059 2-89 (103)
68 2ckz_B C25, DNA-directed RNA p 97.7 4.4E-05 1.5E-09 83.0 7.5 66 844-909 79-157 (218)
69 2cs0_A Hematopoietic SH2 domai 97.7 9.9E-05 3.4E-09 72.8 9.1 83 964-1058 12-95 (119)
70 1mil_A SHC adaptor protein; SH 97.7 0.00012 4.1E-09 70.4 9.4 79 965-1059 4-83 (104)
71 2vif_A Suppressor of cytokine 97.7 0.0001 3.5E-09 74.9 9.3 85 965-1059 21-106 (141)
72 3eaz_A Tyrosine-protein kinase 97.7 0.00016 5.6E-09 69.6 10.3 82 965-1059 5-87 (106)
73 1h9o_A Phosphatidylinositol 3- 97.7 0.00013 4.5E-09 71.1 9.5 84 962-1058 4-88 (112)
74 2vnu_D Exosome complex exonucl 97.7 3E-05 1E-09 99.2 6.2 70 848-917 671-760 (760)
75 2gsb_A RAS GTPase-activating p 97.7 9E-05 3.1E-09 73.1 8.1 82 964-1058 12-95 (119)
76 2crh_A VAV proto-oncogene; onc 97.6 0.00012 4.1E-09 74.1 9.0 83 964-1059 22-105 (138)
77 3ov1_A Growth factor receptor- 97.6 0.0002 6.8E-09 70.4 10.2 82 965-1059 3-86 (117)
78 2dly_A FYN-related kinase; BRK 97.6 0.00015 5.1E-09 71.7 9.3 84 964-1059 12-98 (121)
79 3s9k_A Tyrosine-protein kinase 97.6 0.0003 1E-08 69.1 11.0 85 965-1059 6-97 (118)
80 1blj_A P55 BLK protein tyrosin 97.6 9.5E-05 3.2E-09 72.2 7.4 85 964-1059 8-98 (114)
81 2nn6_H Exosome complex exonucl 97.6 5.5E-05 1.9E-09 86.2 6.3 78 843-921 92-178 (308)
82 1nrv_A Growth factor receptor- 97.6 0.00028 9.7E-09 67.8 10.1 84 967-1058 4-90 (105)
83 3tkz_A Tyrosine-protein phosph 97.6 0.00026 8.8E-09 68.6 9.9 80 966-1058 5-86 (109)
84 2ysx_A Signaling inositol poly 97.6 0.00023 7.9E-09 70.1 9.5 88 965-1059 7-96 (119)
85 1aot_F FYN protein-tyrosine ki 97.5 5.8E-05 2E-09 72.7 5.0 83 966-1059 3-92 (106)
86 2lnw_A VAV-2, guanine nucleoti 97.5 0.00025 8.6E-09 70.2 9.2 84 963-1059 17-101 (122)
87 3pqz_A Growth factor receptor- 97.5 0.00049 1.7E-08 67.4 11.1 88 963-1058 9-99 (117)
88 2c9w_A Suppressor of cytokine 97.5 0.00033 1.1E-08 73.4 10.3 88 964-1059 13-103 (169)
89 2eob_A 1-phosphatidylinositol- 97.5 0.00035 1.2E-08 69.4 9.9 82 964-1059 15-98 (124)
90 2ge9_A Tyrosine-protein kinase 97.5 0.00023 7.8E-09 70.8 8.5 85 963-1059 6-97 (125)
91 2wp8_J Exosome complex exonucl 97.5 6.3E-05 2.1E-09 98.1 5.4 71 847-917 887-977 (977)
92 2eo6_A B-cell linker protein; 97.5 0.00028 9.6E-09 71.7 9.2 88 965-1059 20-111 (141)
93 1wqu_A C-FES, proto-oncogene t 97.5 0.0003 1E-08 68.7 9.1 78 964-1058 12-90 (114)
94 2bh8_A 1B11; transcription, mo 97.5 7.6E-05 2.6E-09 71.4 4.4 41 842-882 57-97 (101)
95 2kk6_A Proto-oncogene tyrosine 97.5 0.00042 1.4E-08 68.0 9.8 80 963-1058 12-92 (116)
96 2hmh_A Suppressor of cytokine 97.4 0.00026 8.9E-09 72.9 8.5 88 964-1059 30-120 (152)
97 2el8_A Signal-transducing adap 97.4 0.00027 9.1E-09 69.6 8.2 86 962-1059 15-107 (118)
98 2dm0_A Tyrosine-protein kinase 97.4 0.00016 5.5E-09 71.8 6.6 85 963-1059 11-102 (125)
99 2bx2_L Ribonuclease E, RNAse E 97.4 0.00022 7.6E-09 86.3 8.5 75 843-917 42-126 (517)
100 1ka6_A SH2 domain protein 1A; 97.4 0.00033 1.1E-08 69.9 8.4 87 966-1059 2-90 (128)
101 2kno_A Tensin-like C1 domain-c 97.4 0.0002 6.8E-09 71.8 6.5 84 965-1058 17-116 (131)
102 2aug_A Growth factor receptor- 97.3 0.0008 2.7E-08 67.0 10.3 85 964-1058 22-111 (126)
103 2dx0_A Phospholipase C, gamma 97.2 0.00079 2.7E-08 68.1 9.2 86 964-1059 18-112 (138)
104 1k0r_A NUSA; two component arr 97.2 0.00047 1.6E-08 79.6 8.2 69 844-919 128-205 (366)
105 2bbu_A Suppressor of cytokine 97.2 0.00057 2E-08 71.1 7.4 86 965-1058 20-108 (164)
106 2ja9_A Exosome complex exonucl 97.1 0.00072 2.5E-08 70.9 7.9 72 843-917 4-76 (175)
107 4d8k_A Tyrosine-protein kinase 97.1 0.0019 6.4E-08 67.9 11.0 83 965-1058 71-160 (175)
108 3qwx_X Cell death abnormality 97.0 0.0015 5E-08 68.6 8.9 87 964-1057 8-100 (174)
109 2dvj_A V-CRK sarcoma virus CT1 97.0 0.00044 1.5E-08 76.0 4.8 94 964-1059 9-109 (230)
110 2izv_A Suppressor of cytokine 97.0 0.0017 5.8E-08 69.0 9.1 86 965-1059 31-117 (187)
111 2asb_A Transcription elongatio 97.0 0.0014 4.6E-08 72.0 8.3 69 845-920 6-83 (251)
112 2bbu_A Suppressor of cytokine 97.0 0.0066 2.2E-07 63.1 13.1 93 1058-1155 11-112 (164)
113 2oq1_A Tyrosine-protein kinase 96.8 0.0036 1.2E-07 69.8 10.6 82 964-1058 155-239 (254)
114 2dly_A FYN-related kinase; BRK 96.8 0.0016 5.3E-08 64.3 6.3 87 1065-1154 11-100 (121)
115 2gsb_A RAS GTPase-activating p 96.7 0.0074 2.5E-07 59.3 10.5 82 1068-1153 14-97 (119)
116 1r1p_A GRB2-related adaptor pr 96.6 0.004 1.4E-07 59.3 7.9 82 1067-1153 6-89 (100)
117 1a81_A SYK kinase; complex (tr 96.6 0.0055 1.9E-07 68.3 10.2 84 963-1059 153-239 (254)
118 3ov1_A Growth factor receptor- 96.6 0.0046 1.6E-07 60.6 8.4 82 1069-1154 5-88 (117)
119 1iv0_A Hypothetical protein; r 96.6 0.0075 2.6E-07 57.2 9.1 88 460-574 2-97 (98)
120 4fbn_A 1-phosphatidylinositol 96.6 0.0056 1.9E-07 67.9 9.6 77 966-1057 120-198 (246)
121 3maz_A Signal-transducing adap 96.5 0.0087 3E-07 59.0 9.4 78 968-1059 15-99 (125)
122 2vif_A Suppressor of cytokine 96.5 0.0082 2.8E-07 60.8 9.5 96 1050-1154 8-108 (141)
123 2y3a_B Phosphatidylinositol 3- 96.4 0.0042 1.4E-07 70.6 7.7 83 963-1058 189-272 (302)
124 2cia_A Cytoplasmic protein NCK 96.4 0.012 4E-07 56.2 9.5 79 1070-1152 5-84 (102)
125 3hhm_B NISH2 P85alpha; PI3KCA, 96.3 0.0084 2.9E-07 70.2 9.6 83 965-1060 7-91 (373)
126 2eyz_A V-CRK sarcoma virus CT1 96.3 0.0024 8.3E-08 73.1 4.5 96 964-1060 7-108 (304)
127 2dlz_A Protein VAV-2; RHO fami 96.3 0.014 4.9E-07 57.1 9.4 82 1067-1153 13-96 (118)
128 1jyr_A Growth factor receptor- 96.3 0.0088 3E-07 56.4 7.6 73 1077-1153 11-84 (96)
129 2hdv_A SH2-B PH domain contain 96.2 0.011 3.9E-07 57.2 8.3 87 1067-1155 6-94 (111)
130 2cs0_A Hematopoietic SH2 domai 96.2 0.026 8.9E-07 55.3 10.9 78 1070-1153 16-97 (119)
131 2eo3_A CRK-like protein; phosp 96.1 0.015 5.1E-07 56.3 8.8 79 1071-1154 20-100 (111)
132 1d4t_A T cell signal transduct 96.1 0.014 4.7E-07 55.8 8.5 80 1070-1153 4-91 (104)
133 1rja_A Tyrosine-protein kinase 96.1 0.022 7.4E-07 54.0 9.5 81 1071-1154 3-86 (100)
134 1i3z_A EWS/FLI1 activated tran 96.0 0.016 5.4E-07 55.2 8.1 81 1068-1152 1-89 (103)
135 2nn6_G Exosome complex exonucl 96.0 0.0088 3E-07 67.5 7.1 72 843-917 124-195 (289)
136 2c9w_A Suppressor of cytokine 96.0 0.032 1.1E-06 58.2 11.0 93 1058-1155 5-106 (169)
137 3ci0_K Pseudopilin GSPK; gener 95.9 0.0018 6.2E-08 73.9 1.3 66 652-720 186-256 (298)
138 2hmh_A Suppressor of cytokine 95.9 0.02 6.9E-07 58.7 8.9 89 1060-1153 24-121 (152)
139 3qwy_A Cell death abnormality 95.9 0.019 6.4E-07 65.8 9.5 89 963-1058 36-130 (308)
140 2iug_A Phosphatidylinositol 3- 95.9 0.025 8.4E-07 55.6 9.0 85 1065-1154 6-93 (120)
141 1h9o_A Phosphatidylinositol 3- 95.9 0.024 8.4E-07 54.9 8.9 78 1070-1153 10-90 (112)
142 1ka6_A SH2 domain protein 1A; 95.8 0.022 7.5E-07 56.6 8.6 80 1070-1153 4-91 (128)
143 1nu0_A Hypothetical protein YQ 95.8 0.032 1.1E-06 56.2 9.7 97 460-579 4-105 (138)
144 2lnw_A VAV-2, guanine nucleoti 95.7 0.03 1E-06 55.2 9.0 81 1067-1152 19-101 (122)
145 2lqn_A CRK-like protein; SH2, 94.7 0.0018 6.2E-08 74.1 0.0 85 964-1061 8-93 (303)
146 3tkz_A Tyrosine-protein phosph 95.6 0.031 1.1E-06 53.8 8.6 83 1067-1153 4-88 (109)
147 2ekx_A Cytoplasmic tyrosine-pr 95.5 0.038 1.3E-06 53.3 8.8 82 1067-1153 8-98 (110)
148 3pqz_A Growth factor receptor- 95.5 0.027 9.3E-07 54.9 7.7 82 1069-1153 13-101 (117)
149 2kno_A Tensin-like C1 domain-c 95.5 0.022 7.6E-07 56.9 7.2 73 1076-1153 27-118 (131)
150 3k2m_A Proto-oncogene tyrosine 95.5 0.037 1.3E-06 53.5 8.6 79 1069-1152 4-85 (112)
151 2ysx_A Signaling inositol poly 95.5 0.048 1.6E-06 53.4 9.4 81 1069-1153 9-97 (119)
152 2ecd_A Tyrosine-protein kinase 95.5 0.028 9.5E-07 55.1 7.7 82 1066-1152 12-96 (119)
153 1ju5_A CRK; CRK, SH2, SH3, ada 95.5 0.048 1.6E-06 52.5 9.2 73 1076-1153 7-97 (109)
154 3eaz_A Tyrosine-protein kinase 95.4 0.035 1.2E-06 53.2 8.1 80 1069-1153 7-88 (106)
155 3us4_A Megakaryocyte-associate 95.4 0.035 1.2E-06 52.3 7.9 79 1070-1153 5-85 (98)
156 2eo6_A B-cell linker protein; 95.3 0.022 7.5E-07 57.6 6.5 90 1061-1154 14-113 (141)
157 1nrv_A Growth factor receptor- 95.3 0.029 1E-06 53.6 6.9 73 1077-1152 13-91 (105)
158 1blj_A P55 BLK protein tyrosin 95.3 0.025 8.5E-07 54.9 6.5 83 1067-1152 9-98 (114)
159 1mil_A SHC adaptor protein; SH 95.2 0.01 3.6E-07 56.7 3.5 80 1067-1153 4-84 (104)
160 2eob_A 1-phosphatidylinositol- 95.2 0.04 1.4E-06 54.4 7.7 82 1067-1153 16-99 (124)
161 2dm0_A Tyrosine-protein kinase 95.1 0.052 1.8E-06 53.6 8.5 81 1068-1153 14-103 (125)
162 2kk6_A Proto-oncogene tyrosine 95.1 0.027 9.3E-07 55.0 6.2 78 1069-1153 16-94 (116)
163 2aug_A Growth factor receptor- 95.1 0.035 1.2E-06 55.1 7.0 83 1067-1152 23-112 (126)
164 1kft_A UVRC, excinuclease ABC 95.1 0.005 1.7E-07 55.8 0.8 59 654-717 16-76 (78)
165 2dx0_A Phospholipase C, gamma 95.0 0.043 1.5E-06 55.2 7.6 86 1068-1153 20-113 (138)
166 2crh_A VAV proto-oncogene; onc 95.0 0.087 3E-06 53.0 9.7 80 1068-1153 24-106 (138)
167 3cxl_A N-chimerin; SH2, RHO-GA 94.9 0.053 1.8E-06 65.6 9.5 80 965-1060 43-133 (463)
168 2shp_A SHP-2, SYP, SHPTP-2; ty 94.9 0.061 2.1E-06 66.1 10.1 81 966-1058 108-199 (525)
169 1wqu_A C-FES, proto-oncogene t 94.9 0.031 1.1E-06 54.4 6.0 80 1066-1153 12-92 (114)
170 2y3a_B Phosphatidylinositol 3- 94.9 0.041 1.4E-06 62.5 7.7 81 1067-1153 191-274 (302)
171 2ozo_A Tyrosine-protein kinase 94.8 0.066 2.3E-06 67.1 10.3 83 962-1057 155-240 (613)
172 2xp1_A SPT6; transcription, IW 94.6 0.09 3.1E-06 55.2 8.9 82 1063-1151 7-89 (178)
173 1lkk_A Human P56 tyrosine kina 94.5 0.041 1.4E-06 52.4 5.7 80 1070-1152 4-91 (105)
174 3s9k_A Tyrosine-protein kinase 94.5 0.077 2.6E-06 51.6 7.7 83 1066-1153 5-98 (118)
175 2el8_A Signal-transducing adap 94.4 0.042 1.4E-06 53.8 5.6 82 1069-1154 20-109 (118)
176 4fl3_A Tyrosine-protein kinase 94.3 0.18 6.1E-06 63.5 12.6 85 961-1058 159-246 (635)
177 2ge9_A Tyrosine-protein kinase 94.3 0.11 3.7E-06 51.4 8.3 81 1068-1153 9-98 (125)
178 1gri_A Growth factor bound pro 94.3 0.2 6.7E-06 54.0 11.1 82 965-1059 55-138 (217)
179 1aot_F FYN protein-tyrosine ki 93.9 0.027 9.1E-07 53.9 3.0 80 1070-1152 5-92 (106)
180 1z00_A DNA excision repair pro 93.9 0.0084 2.9E-07 55.7 -0.6 61 654-719 11-73 (89)
181 3qwx_X Cell death abnormality 93.8 0.1 3.4E-06 54.5 7.5 83 1068-1154 10-104 (174)
182 1ixr_A Holliday junction DNA h 93.4 0.022 7.5E-07 60.6 1.5 52 667-718 72-128 (191)
183 1hjr_A Holliday junction resol 93.3 0.14 4.8E-06 52.7 7.4 64 460-527 2-65 (158)
184 3maz_A Signal-transducing adap 93.3 0.21 7.2E-06 49.2 8.1 78 1073-1155 19-102 (125)
185 2a1j_B DNA excision repair pro 93.3 0.015 5.2E-07 54.2 -0.0 60 653-717 23-84 (91)
186 2bcq_A DNA polymerase lambda; 93.2 0.051 1.7E-06 62.9 4.3 46 668-714 58-113 (335)
187 1opk_A P150, C-ABL, proto-onco 93.1 0.23 8E-06 60.3 10.2 81 965-1057 102-183 (495)
188 4ep4_A Crossover junction endo 93.0 0.18 6.3E-06 52.2 7.7 67 460-529 2-71 (166)
189 2bh8_A 1B11; transcription, mo 92.9 0.13 4.4E-06 49.0 5.9 60 844-907 11-74 (101)
190 2ztd_A Holliday junction ATP-d 92.8 0.034 1.1E-06 60.0 1.8 50 666-715 87-141 (212)
191 4d8k_A Tyrosine-protein kinase 92.7 0.14 4.9E-06 53.4 6.5 84 1067-1153 71-162 (175)
192 2cr4_A 3BP-2, SH3 domain-bindi 92.4 0.13 4.4E-06 51.0 5.2 71 966-1058 28-102 (126)
193 1x2i_A HEF helicase/nuclease; 92.3 0.047 1.6E-06 48.5 1.8 52 667-718 14-67 (75)
194 3ps5_A Tyrosine-protein phosph 92.3 0.26 8.9E-06 61.5 9.1 81 966-1058 106-196 (595)
195 1cuk_A RUVA protein; DNA repai 92.2 0.043 1.5E-06 58.9 1.7 52 667-718 73-129 (203)
196 1vq8_Y 50S ribosomal protein L 92.2 0.026 8.9E-07 62.1 0.0 63 651-719 5-70 (241)
197 2izv_A Suppressor of cytokine 92.0 0.13 4.4E-06 54.5 5.1 87 1064-1155 28-120 (187)
198 1fmk_A C-SRC, P60-SRC, tyrosin 91.8 0.42 1.4E-05 57.2 9.9 83 965-1058 62-151 (452)
199 2h8h_A Proto-oncogene tyrosine 91.7 0.44 1.5E-05 58.5 10.2 83 965-1058 145-234 (535)
200 2b3o_A Tyrosine-protein phosph 91.6 0.46 1.6E-05 58.5 10.1 81 966-1058 106-196 (532)
201 2lqn_A CRK-like protein; SH2, 90.1 0.046 1.6E-06 62.4 0.0 85 1065-1154 7-93 (303)
202 1k9a_A Carboxyl-terminal SRC k 89.8 0.86 2.9E-05 54.5 10.0 81 964-1057 76-157 (450)
203 1deq_A Fibrinogen (alpha chain 89.6 2.5 8.6E-05 48.4 12.8 25 1045-1069 110-134 (390)
204 3qwy_A Cell death abnormality 88.8 0.75 2.5E-05 52.4 8.1 86 1066-1155 37-134 (308)
205 1deq_A Fibrinogen (alpha chain 88.8 3.9 0.00013 46.9 13.5 14 1045-1058 121-134 (390)
206 2w9m_A Polymerase X; SAXS, DNA 88.6 0.26 8.7E-06 61.3 4.4 50 666-720 96-154 (578)
207 3c65_A Uvrabc system protein C 88.5 0.086 2.9E-06 57.3 0.0 51 666-717 172-224 (226)
208 1qcf_A Haematopoetic cell kina 88.4 1.3 4.5E-05 52.9 10.3 83 965-1058 67-156 (454)
209 3cbl_A C-FES, proto-oncogene t 88.3 0.54 1.8E-05 54.7 6.7 79 963-1058 8-87 (377)
210 2eyz_A V-CRK sarcoma virus CT1 88.2 0.1 3.4E-06 59.6 0.3 83 1067-1154 8-109 (304)
211 2fmp_A DNA polymerase beta; nu 88.2 0.25 8.5E-06 57.2 3.6 45 668-713 58-114 (335)
212 2dvj_A V-CRK sarcoma virus CT1 87.8 0.26 8.7E-06 53.9 3.2 84 1067-1155 10-112 (230)
213 2ihm_A POL MU, DNA polymerase 87.5 0.34 1.2E-05 56.5 4.2 45 668-713 62-118 (360)
214 2cr4_A 3BP-2, SH3 domain-bindi 87.4 0.56 1.9E-05 46.3 5.1 58 1096-1154 45-105 (126)
215 2r7d_A Ribonuclease II family 87.3 0.8 2.7E-05 55.3 7.4 59 846-917 403-461 (469)
216 2pk2_A Cyclin-T1, protein TAT; 87.2 0.11 3.9E-06 60.5 0.0 15 1140-1154 232-246 (358)
217 2bgw_A XPF endonuclease; hydro 87.1 0.13 4.5E-06 55.8 0.3 51 667-717 162-214 (219)
218 3hhm_B NISH2 P85alpha; PI3KCA, 86.6 0.67 2.3E-05 54.2 6.0 82 1067-1153 7-91 (373)
219 2b5u_A Colicin E3; high resolu 85.8 0.15 5.2E-06 59.7 0.0 12 1287-1298 37-48 (551)
220 3or8_A Transcription elongatio 84.9 1.5 5E-05 46.7 7.0 81 1065-1150 3-92 (197)
221 2a1j_A DNA repair endonuclease 82.8 0.17 5.8E-06 43.8 -1.0 49 667-717 4-55 (63)
222 1z00_B DNA repair endonuclease 81.3 0.14 4.8E-06 47.0 -2.2 55 656-717 12-69 (84)
223 1gri_A Growth factor bound pro 78.6 10 0.00034 40.4 11.0 81 1070-1154 58-140 (217)
224 3ci0_K Pseudopilin GSPK; gener 75.6 2.1 7.3E-05 48.5 4.8 68 654-722 78-183 (298)
225 3b0x_A DNA polymerase beta fam 75.2 1.3 4.6E-05 54.9 3.2 46 665-714 91-145 (575)
226 1jms_A Terminal deoxynucleotid 75.2 1.8 6E-05 50.9 4.1 45 668-713 81-137 (381)
227 2rf4_A DNA-directed RNA polyme 74.3 6.5 0.00022 42.3 7.9 66 844-910 127-204 (214)
228 3d0f_A Penicillin-binding 1 tr 73.9 5.5 0.00019 37.8 6.5 56 846-901 33-93 (106)
229 3cxl_A N-chimerin; SH2, RHO-GA 73.3 7 0.00024 47.0 8.8 79 1067-1152 43-132 (463)
230 1fmk_A C-SRC, P60-SRC, tyrosin 71.0 3.4 0.00012 49.3 5.3 85 1066-1153 61-153 (452)
231 4b21_A Probable DNA-3-methylad 68.4 2.7 9.2E-05 45.9 3.3 44 673-716 112-169 (232)
232 2h8h_A Proto-oncogene tyrosine 67.9 3.9 0.00013 50.0 5.0 86 1066-1154 144-237 (535)
233 3s6i_A DNA-3-methyladenine gly 66.2 3.9 0.00013 44.5 4.0 46 671-716 99-158 (228)
234 3bux_B E3 ubiquitin-protein li 65.5 7.8 0.00027 43.5 6.2 52 965-1016 240-294 (329)
235 3psi_A Transcription elongatio 63.0 3.2 0.00011 55.3 3.0 173 970-1149 879-1107(1219)
236 3eiv_A Single-stranded DNA-bin 62.4 1.6 5.5E-05 46.5 0.0 6 1122-1127 52-57 (199)
237 1k9a_A Carboxyl-terminal SRC k 62.1 16 0.00054 43.4 8.7 81 1068-1153 78-160 (450)
238 3op0_A Signal transduction pro 61.4 9.1 0.00031 42.7 5.7 49 966-1014 226-277 (323)
239 1qcf_A Haematopoetic cell kina 61.1 7.9 0.00027 46.0 5.8 85 1066-1153 66-158 (454)
240 3f2b_A DNA-directed DNA polyme 60.2 10 0.00035 49.8 6.8 65 649-714 943-1013(1041)
241 2hnh_A DNA polymerase III alph 58.0 14 0.00048 48.1 7.6 65 648-714 808-883 (910)
242 3cbl_A C-FES, proto-oncogene t 57.7 9.9 0.00034 43.9 5.7 80 1067-1154 10-90 (377)
243 2k5n_A Putative cold-shock pro 57.6 33 0.0011 30.5 7.7 49 848-905 1-53 (74)
244 2nrt_A Uvrabc system protein C 57.5 2 6.8E-05 46.4 -0.3 49 667-717 168-219 (220)
245 2jhn_A ALKA, 3-methyladenine D 57.4 5.1 0.00017 45.3 3.0 44 672-716 177-229 (295)
246 1c9o_A CSPB, cold-shock protei 56.4 44 0.0015 28.8 8.2 51 850-906 2-55 (66)
247 3op0_A Signal transduction pro 55.2 18 0.00062 40.4 6.7 57 1060-1119 217-275 (323)
248 2hpi_A DNA polymerase III alph 54.8 15 0.00051 49.1 7.1 66 649-714 866-939 (1220)
249 3ezx_A MMCP 1, monomethylamine 51.1 87 0.003 33.4 11.3 79 511-603 133-214 (215)
250 3a0j_A Cold shock protein; OB- 51.1 51 0.0017 29.1 7.8 51 850-906 2-55 (73)
251 3i2z_B RNA chaperone, negative 50.6 56 0.0019 28.6 8.0 52 849-906 5-60 (71)
252 2h56_A DNA-3-methyladenine gly 50.5 7.2 0.00025 42.5 2.7 46 671-716 99-157 (233)
253 1opk_A P150, C-ABL, proto-onco 49.6 42 0.0014 40.3 9.6 89 1055-1152 94-185 (495)
254 1x2i_A HEF helicase/nuclease; 49.3 7.2 0.00025 34.1 2.0 23 667-689 46-68 (75)
255 2yg9_A DNA-3-methyladenine gly 48.8 9.7 0.00033 41.2 3.4 46 671-716 107-165 (225)
256 2l6f_A Focal adhesion kinase 1 54.4 3.7 0.00012 43.3 0.0 11 1140-1150 79-89 (215)
257 3c1y_A DNA integrity scanning 48.8 8.7 0.0003 44.6 3.1 50 663-712 311-362 (377)
258 4e9f_A Methyl-CPG-binding doma 48.5 3.3 0.00011 42.6 -0.3 49 667-716 73-123 (161)
259 1wfq_A UNR protein; beta-barre 47.5 65 0.0022 29.6 8.2 59 842-907 11-71 (89)
260 1jjg_A M156R; beta barrel, S1 47.4 70 0.0024 29.4 8.0 70 840-914 26-98 (102)
261 1h95_A CSD, Y-box binding prot 46.1 69 0.0023 28.7 8.0 56 848-905 7-66 (79)
262 1g6p_A Cold shock protein TMCS 45.6 26 0.0009 30.3 5.0 48 851-904 2-52 (66)
263 3cam_A Cold-shock domain famil 44.5 73 0.0025 27.6 7.6 50 851-906 3-56 (67)
264 3bul_A Methionine synthase; tr 42.2 3.2E+02 0.011 33.5 15.7 85 511-607 139-226 (579)
265 1z00_A DNA excision repair pro 40.0 12 0.00041 34.2 2.0 23 667-689 51-73 (89)
266 1kea_A Possible G-T mismatches 38.2 21 0.00073 38.3 4.0 44 673-716 85-134 (221)
267 2kcm_A Cold shock domain famil 37.7 44 0.0015 29.6 5.3 48 851-904 2-53 (74)
268 3ezw_A Glycerol kinase; glycer 37.2 67 0.0023 39.0 8.7 69 460-530 5-80 (526)
269 1kft_A UVRC, excinuclease ABC 37.1 9.1 0.00031 34.1 0.7 21 667-687 56-76 (78)
270 3i4o_A Translation initiation 36.0 46 0.0016 30.0 5.1 61 849-914 15-76 (79)
271 2a1j_B DNA excision repair pro 35.7 12 0.00042 34.3 1.4 22 667-688 64-85 (91)
272 2abk_A Endonuclease III; DNA-r 35.3 26 0.00087 37.4 4.0 43 674-716 80-128 (211)
273 1orn_A Endonuclease III; DNA r 35.2 24 0.00082 38.1 3.8 44 673-716 83-132 (226)
274 1d7q_A Translation initiation 35.2 79 0.0027 31.7 7.2 68 847-920 30-98 (143)
275 3ou5_A Serine hydroxymethyltra 33.4 16 0.00053 43.8 2.1 78 460-546 146-228 (490)
276 2dgy_A MGC11102 protein; EIF-1 33.4 67 0.0023 30.8 6.1 70 844-920 12-83 (111)
277 2ch5_A NAGK protein; transfera 33.4 95 0.0032 35.0 8.7 28 460-489 7-34 (347)
278 2e2o_A Hexokinase; acetate and 32.9 79 0.0027 35.0 7.8 97 460-577 3-102 (299)
279 3aqq_A Calcium-regulated heat 30.2 81 0.0028 31.8 6.4 52 846-905 59-114 (147)
280 4gfj_A Topoisomerase V; helix- 30.1 38 0.0013 39.3 4.3 50 666-716 467-518 (685)
281 2yty_A Cold shock domain-conta 29.8 80 0.0027 28.9 5.8 53 846-904 15-68 (88)
282 1pu6_A 3-methyladenine DNA gly 29.4 27 0.00094 37.4 3.0 44 673-716 87-140 (218)
283 1kg2_A A/G-specific adenine gl 28.9 43 0.0015 36.0 4.5 42 674-716 81-128 (225)
284 1cuk_A RUVA protein; DNA repai 28.9 24 0.00084 37.5 2.5 28 656-688 102-129 (203)
285 1zbs_A Hypothetical protein PG 28.6 82 0.0028 34.8 7.0 26 461-489 2-27 (291)
286 2lss_A Cold shock-like protein 34.4 12 0.00042 32.8 0.0 53 848-906 3-59 (70)
287 1ixr_A Holliday junction DNA h 28.3 24 0.00081 37.3 2.2 28 656-688 101-128 (191)
288 3n5n_X A/G-specific adenine DN 28.0 42 0.0014 37.6 4.3 39 678-716 103-148 (287)
289 3sgi_A DNA ligase; HET: DNA AM 27.8 13 0.00043 46.1 0.0 50 672-721 534-585 (615)
290 3ll3_A Gluconate kinase; xylul 27.7 95 0.0032 37.4 7.8 70 460-531 5-78 (504)
291 1zxo_A Conserved hypothetical 27.5 43 0.0015 37.1 4.4 27 461-490 2-28 (291)
292 3ts2_A Protein LIN-28 homolog 27.5 1.4E+02 0.0048 29.9 7.7 54 848-907 8-72 (148)
293 2fmp_A DNA polymerase beta; nu 27.3 26 0.00089 40.2 2.5 30 667-701 98-127 (335)
294 2itm_A Xylulose kinase, xylulo 27.1 1.1E+02 0.0038 36.6 8.2 27 461-489 2-28 (484)
295 1yvl_A Signal transducer and a 27.0 55 0.0019 40.9 5.4 38 974-1011 582-620 (683)
296 4glx_A DNA ligase; inhibitor, 26.7 41 0.0014 41.5 4.3 23 667-689 480-502 (586)
297 3max_A HD2, histone deacetylas 26.2 2.5E+02 0.0086 32.4 10.5 88 511-617 237-334 (367)
298 3n0u_A Probable N-glycosylase/ 26.0 18 0.00062 39.0 0.8 42 675-716 98-149 (219)
299 1bf5_A Signal transducer and a 25.8 37 0.0013 41.5 3.5 38 974-1011 447-485 (575)
300 1mpg_A ALKA, 3-methyladenine D 25.7 49 0.0017 36.9 4.3 46 671-716 170-226 (282)
301 3epq_A Putative fructokinase; 25.4 95 0.0032 34.7 6.7 57 460-529 4-60 (302)
302 4ehu_A Activator of 2-hydroxyi 25.3 75 0.0026 34.7 5.8 29 460-490 2-30 (276)
303 3ulj_A LIN28B, DNA-binding pro 25.1 2.1E+02 0.0071 26.3 7.7 54 848-907 7-71 (90)
304 2w40_A Glycerol kinase, putati 24.7 1E+02 0.0035 37.1 7.3 28 460-489 5-32 (503)
305 2owo_A DNA ligase; protein-DNA 24.7 39 0.0013 42.4 3.5 48 667-715 480-530 (671)
306 3ifr_A Carbohydrate kinase, FG 24.4 96 0.0033 37.4 7.0 70 460-531 8-84 (508)
307 3g25_A Glycerol kinase; IDP007 24.1 1.3E+02 0.0046 36.1 8.1 26 460-487 7-32 (501)
308 4e1j_A Glycerol kinase; struct 23.9 1.3E+02 0.0046 36.3 8.1 71 459-531 26-103 (520)
309 2p3r_A Glycerol kinase; glycer 23.8 1.2E+02 0.0041 36.6 7.6 70 460-531 4-80 (510)
310 3fhf_A Mjogg, N-glycosylase/DN 23.7 20 0.00067 38.6 0.5 38 675-712 92-140 (214)
311 2ytv_A Cold shock domain-conta 23.6 45 0.0015 29.9 2.8 51 848-905 7-59 (79)
312 1b22_A DNA repair protein RAD5 23.6 34 0.0012 33.0 2.1 41 655-700 51-93 (114)
313 2gup_A ROK family protein; sug 23.3 96 0.0033 34.1 6.2 58 460-529 5-62 (292)
314 3h6e_A Carbohydrate kinase, FG 23.3 82 0.0028 37.9 6.0 28 460-489 7-34 (482)
315 1uur_A Stata protein, STAT pro 23.1 85 0.0029 37.5 5.8 61 961-1021 344-407 (473)
316 3ng9_A Capsid protein; beta ba 23.1 20 0.00068 44.6 0.5 15 1046-1060 65-79 (736)
317 2qm1_A Glucokinase; alpha-beta 23.0 1.4E+02 0.0047 33.3 7.5 56 460-521 7-62 (326)
318 2dpn_A Glycerol kinase; thermu 22.1 1.4E+02 0.0048 35.8 7.8 27 460-488 3-29 (495)
319 3l0q_A Xylulose kinase; xlylul 21.9 1.2E+02 0.0041 37.0 7.2 70 460-531 6-82 (554)
320 3ntt_A Capsid protein; gene th 21.8 19 0.00065 44.7 -0.1 14 1047-1060 65-78 (724)
321 2bcq_A DNA polymerase lambda; 21.1 45 0.0015 38.2 2.9 33 666-703 95-127 (335)
322 3vgl_A Glucokinase; ROK family 21.0 84 0.0029 35.3 5.1 61 460-528 3-63 (321)
323 3ghg_A Fibrinogen alpha chain; 20.9 21 0.0007 42.7 0.0 131 1207-1344 245-381 (562)
324 2ytx_A Cold shock domain-conta 20.9 1.2E+02 0.0042 28.1 5.3 50 847-903 16-67 (97)
325 3b0x_A DNA polymerase beta fam 20.8 52 0.0018 40.5 3.6 48 669-716 55-112 (575)
326 3i0w_A 8-oxoguanine-DNA-glycos 20.8 33 0.0011 38.5 1.6 47 668-716 171-230 (290)
327 2ztd_A Holliday junction ATP-d 20.6 41 0.0014 36.0 2.2 22 667-688 123-144 (212)
328 2zf5_O Glycerol kinase; hypert 20.5 1.5E+02 0.005 35.6 7.5 70 460-531 4-80 (497)
329 3h8z_A FragIle X mental retard 20.4 1.4E+02 0.0047 29.4 5.8 59 845-904 13-73 (128)
330 3fhg_A Mjogg, N-glycosylase/DN 20.2 41 0.0014 35.7 2.2 42 675-716 81-136 (207)
331 3h3n_X Glycerol kinase; ATP-bi 20.2 1.4E+02 0.0046 36.1 7.1 70 460-531 6-82 (506)
No 1
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-231 Score=2210.33 Aligned_cols=1074 Identities=22% Similarity=0.358 Sum_probs=706.2
Q ss_pred ccccC-CCCCCCchhHHHHHHHHHHHHhcCcCcccccCCCCCCCCCCC-CCCCHHHHHHHHHHhhhCCCccceeeecchh
Q 039337 9 LRKAL-AGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHD-LSISRDDIMRFLDLLHLQKLDIPFIAMYRKE 86 (1344)
Q Consensus 9 ~~~~~-~~~~~~~~el~~ea~WI~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~~vL~l~~~~~~eVPFIarYRKE 86 (1344)
.+..+ ++.+++++||++||+||+++||.+.+. .. .. ...++++|++||+||+++++|||||||||||
T Consensus 97 ~~~~~~~~~~~~~~el~eEa~WI~~~~~~~~~~-------~~----~~~~~~~~~aI~~vL~fi~~eg~eVPFIarYRKE 165 (1219)
T 3psi_A 97 LRAGITDYGNMSSEDQELERNWIAEKISVDKNF-------DA----NYDLTEFKEAIGNAIKFITKENLEVPFIYAYRRN 165 (1219)
T ss_dssp HGGGCTTSSCCCHHHHHHHHHHHHHHHHHHHCC-------CS----SCCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCGG
T ss_pred hcccccCCCCCCHHHHHHHHHHHHHHHhccCCC-------Cc----ccchhHHHHHHHHHHHHHHhcCCcCchHHHHHhh
Confidence 34555 888999999999999999999975421 11 11 2568899999999999889999999999999
Q ss_pred hhcccccccccccccCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhh
Q 039337 87 ECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQ 166 (1344)
Q Consensus 87 ~~~~l~~~~~~~e~~~~~~~~~~~~~~l~~~~dLw~I~~ld~k~~~L~~RK~~l~~~~~k~~~~~~~~~~~~~~l~~~~~ 166 (1344)
++.+.+.. ...|+ +++||+|++||+||++|++||++|+++|++ ++++++
T Consensus 166 ~~~~~tg~----------------~~~Ld-e~dLw~I~eld~k~~~L~~RK~~l~k~ie~--------------l~ltde 214 (1219)
T 3psi_A 166 YISSREKD----------------GFLLT-EDDLWDIVSLDIEFHSLVNKKDYVQRFYAE--------------LHIDDP 214 (1219)
T ss_dssp GSBCSSSS----------------SCBCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------TCCCCH
T ss_pred hhccCCCc----------------cccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCCHH
Confidence 97432100 01233 469999999999999999999999999985 245677
Q ss_pred hHHHHHH--HHHhhhhhhhHhhhhcccccCCCCCCCCCC----ccCccCCCCcchHHHHHHcChHHHHHHhccChHHHhh
Q 039337 167 LFDSISK--SLEAAETEREVDDVDLKFNLHFPPGEVGVD----EGQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGL 240 (1344)
Q Consensus 167 l~~~~~~--~l~~a~t~eel~Di~~~~~l~y~~~~~~~~----~~~~kr~~r~t~y~~a~~~GL~~la~~fgls~~~f~~ 240 (1344)
|+++++. .+..|.|++||+|||+||.|+|+.++.+|. .++.||++|++.|++||+.+++.||+.|||||++||+
T Consensus 215 l~~~i~~~~~~~~a~t~eeLeDly~~~~~~y~~~l~~~~~~~~~~~kkk~~~~s~Y~~~k~~~a~~la~~~GL~~~~lae 294 (1219)
T 3psi_A 215 IVTEYFKNQNTASIAELNSLQDIYDYLEFKYANEINEMFINHTGKTGKKHLKNSSYEKFKASPLYQAVSDIGISAEDVGE 294 (1219)
T ss_dssp HHHHHHHHCC--------HHHHHHHHHHHHTHHHHHHHHHHHC-------------------CTTHHHHTTSSCHHHHHH
T ss_pred HHHHHHhhhhhcccCCHHHHHHHHhcccCcchhhhHHHhhcccccccCCCccccHHHHHHHHhHHHHHHHhCCCHHHHHH
Confidence 7776633 344899999999999999999997665552 1223455678999999999999999999999999999
Q ss_pred hhhhc-ccCCCCCCCCCCHHHHHHhhhhhc-------CCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhceEEEEEEe
Q 039337 241 QLSLE-KMGDELEDPKETPEEMASNFKCAM-------FNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCP 312 (1344)
Q Consensus 241 nl~~~-~~~~~~~~~~~~p~~~A~~~i~~~-------~~t~e~vl~ga~~ilA~eis~dp~vR~~vR~~~~~~a~Ist~~ 312 (1344)
||..+ +++|+++|+..+|+++|++|++++ |+|+++||+||++|+|++||+||.+|++||+.|+++|+|+|++
T Consensus 295 nl~~~~~~~~~~~d~~~~p~~~A~~~v~~~~~~~~~~~~~~e~aL~gAr~IlAe~is~dp~~R~~vR~~~~~~a~i~s~~ 374 (1219)
T 3psi_A 295 NISSQHQIHPPVDHPSSKPVEVIESILNANSGDLQVFTSNTKLAIDTVQKYYSLELSKNTKIREKVRSDFSKYYLADVVL 374 (1219)
T ss_dssp HHTTSSCSSCCCCCSSSCHHHHHHCC--------------CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTSEEEEEEC
T ss_pred HHHhccccccCcCCCcCCHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHheEEEEEEE
Confidence 99997 888999999999999999999876 9999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccccccccCcCCCc--hHHHHHHhhhccccEEEEEecChhhhhhHHHHHHh-hhccCCCcchhh
Q 039337 313 TPDGDSAIDSFHQFAGVKWLREKPLRKFED--AQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKE-HYLSDGVSKSAQ 389 (1344)
Q Consensus 313 T~kg~~~id~~h~y~~~Kyl~~kpv~~l~~--~q~L~i~raE~egll~v~i~~~~~~~~~~~~~l~~-~~~~d~~s~~~~ 389 (1344)
|++|.+.+|.||+||+|||+.++|++.|.+ +|||+|+|||+||+|+|+|.++++ ..+++.|.. +|.++++|..++
T Consensus 375 t~kG~~~~d~~~~Y~d~k~~~~k~~~h~~~~p~r~Lai~raE~EglL~v~i~~~~~--~~~~~~l~~~~~~~~~~s~~a~ 452 (1219)
T 3psi_A 375 TAKGKKEIQKGSLYEDIKYAINRTPMHFRRDPDVFLKMVEAESLNLLSVKLHMSSQ--AQYIEHLFQIALETTNTSDIAI 452 (1219)
T ss_dssp CTTTTTTTTTTSTTTTTTTCCSCCHHHHHHCTHHHHHHHHHHCC---EEEEEETTH--HHHHHHHHHHSSCCCCCSHHHH
T ss_pred ecCCccccccccchHhhHhHHhcCchhhcccHHHHHHHHHhhhcCceEEEEecCch--hHHHHHHHHHHhccccccchHH
Confidence 999999999999999999999999888754 499999999999999999999985 346777777 677888899999
Q ss_pred hHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCceEeEeecCCC
Q 039337 390 LWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPG 469 (1344)
Q Consensus 390 ~wn~~r~~~l~~a~~~~L~P~~~revr~~L~~~Ae~~~i~~~~~nL~~~L~~~P~~~~~~~~~~~~~~~~rVlai~~dpg 469 (1344)
.||.+|++||++||++ |+|+|++|+|+.|+++|++++|++|++||+++|+||||+|. ...+..++||||++|.+
T Consensus 453 ~wn~~r~~ai~da~kr-L~p~ie~e~r~~L~~~Ae~~ai~~f~~nL~~lL~~aP~~p~-----~~lg~~~~VlaldpG~r 526 (1219)
T 3psi_A 453 EWNNFRKLAFNQAMDK-IFQDISQEVKDNLTKNCQKLVAKTVRHKFMTKLDQAPFIPN-----VRDPKIPKILSLTCGQG 526 (1219)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCCCCSS-----SSSCCCCCEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----cccCCCCeEEEecCCCC
Confidence 9999999999999999 99999999999999999999999999999999999999984 23456789999955544
Q ss_pred C---CceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcCCCcchhhhHHHHHHHHH
Q 039337 470 K---PETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIF 546 (1344)
Q Consensus 470 ~---~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~t~s~~~l~~~~~~~v~ 546 (1344)
. +|||+||||++|+|+++..+ +++.. +++..+++.+.|.+||.+|+|+||||||+|++|.+|.+++.++|.
T Consensus 527 ~~g~~g~k~a~vD~~G~vl~~~~i---~~~~~---~~~~~~~a~~~l~~li~~~~~~vIaIGn~sret~~l~~~l~~~i~ 600 (1219)
T 3psi_A 527 RFGADAIIAVYVNRKGDFIRDYKI---VDNPF---DKTNPEKFEDTLDNIIQSCQPNAIGINGPNPKTQKFYKRLQEVLH 600 (1219)
T ss_dssp CTTTTCEEEEEECTTSCEEEEEEE---CSCTT---CSSCSHHHHHHHHHHHHHHCCSEEEECCSSTHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCEEEEEEE---cCCCC---ChhhHHHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 3 38999999999999998554 22211 122345567899999999999999999999988888887776665
Q ss_pred HHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCCCchhhHHHHHhhhhhcccceehhcccCCCccccccccc
Q 039337 547 KMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLC 626 (1344)
Q Consensus 547 ~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~~~~~~R~avslaR~lqdPl~e~~~l~~~~~~~~~i~~~ 626 (1344)
+.. . ......+|+|++|+++||||||+|++|.+|||++|+++|+||||||||||||+|||+|+. ++++||+||
T Consensus 601 ~~~---~--~~~~~~~i~vviV~e~gAsvYsaS~~A~~EfPd~d~~~R~AVSIaRrlQDPLaElvki~p--kdi~sigvg 673 (1219)
T 3psi_A 601 KKQ---I--VDSRGHTIPIIYVEDEVAIRYQNSERAAQEFPNKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIH 673 (1219)
T ss_dssp HTT---C--BCSSSCBCCEEECCCTTHHHHHTSHHHHHHCTTCCHHHHHHHHHHHHHHCHHHHHHHSCH--HHHHTSCCC
T ss_pred hhc---c--ccccCCCccEEEECchHHHHHhcCHHHHhhCcCCCHHHHHHHHHHHHHhCcHHHHhccCc--ccceeeecc
Confidence 321 0 011123589999999999999999999999999999999999999999999999999931 467899999
Q ss_pred CccccCChhhhhhhhhhhhhcccccccccccccccccccccchhhccCCCHHHHHHHHHHH-HhcCCCCCHHHHhhccCC
Q 039337 627 PLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGL 705 (1344)
Q Consensus 627 ~~Q~~~~~~~l~~~l~~~~~~~vn~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r-~~~g~~~sr~~L~~v~~i 705 (1344)
||||+|++++|.++|+.+|++|||.||||||+|+.|||.+++|||||||||+||++||+|| +.||+|.||+||++|+||
T Consensus 674 ~yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~i 753 (1219)
T 3psi_A 674 PHQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNIL 753 (1219)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCS
T ss_pred ccccccCHHHHHHHHHHHHHHHHhccCccHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 569999999999999999
Q ss_pred CHHHHHhccCcEEEecCCC-CCCccccCCcCcCCCCCCCCHHHHHHHHHHHcCCCcCCCCCCh--hHHHHHHHHHHhcCh
Q 039337 706 GKKVFVNAVGFLRVRRSGQ-AASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDD--EDALEMAIEHVRDRP 782 (1344)
Q Consensus 706 G~kvf~n~a~FlrI~~~~~-~~~~~~~~d~LD~TrIHPEsY~~A~kma~dal~~d~~~d~~~~--~~~~~~~v~~i~~~~ 782 (1344)
|+|+|+||||||||++... ..+++...||||+||||||+|++|+|||+||++++++ |+.+. +..+..++++++++|
T Consensus 754 G~k~fe~~agflrI~~~~~~~~~~~~~~~pLD~T~VHPEsY~~a~kma~dal~~~~e-di~~~~~~~~~~~~v~~l~~~p 832 (1219)
T 3psi_A 754 HKTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPD-TIAEKEEQGTMSEFIELLREDP 832 (1219)
T ss_dssp CHHHHHHHGGGEECCC------------CGGGGSSCCGGGHHHHHHHHHHHTTCCHH-HHHHHHHHTCTTHHHHHHHHCT
T ss_pred cHHHHHhccccEEEcccccccccccCCCCCccCCCCCccchHHHHHHHHHHhCCCHH-HhhccccccchhhHHHHHhhCc
Confidence 9999999999999996542 1233345699999999999999999999999987642 11100 112456889999884
Q ss_pred ---hhhhccChHHHHHH---hhccCccchHHHHHHHHhcCccCccCCCCCCCchhhhhhhccCCcccccCCeEEEEEEEE
Q 039337 783 ---DLLKTYLLDRHIKE---KKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRR 856 (1344)
Q Consensus 783 ---~kl~~ldl~~~~e~---~~~~~~~~tL~~I~~EL~~p~~D~R~~~~~p~~~e~f~~lTget~~~l~~G~iV~g~V~~ 856 (1344)
++|++|+|++|+++ +.+++|++||+||++||.+||+|+|.+|++|++++.|.|||||++++|++|++|+|+|++
T Consensus 833 ~~~~~l~~l~l~~~a~~l~~~~g~~K~~TL~dI~~EL~~P~rD~R~~f~~~~~~e~~~mltget~~~l~~G~iv~G~V~~ 912 (1219)
T 3psi_A 833 DRRAKLESLNLESYAEELEKNTGLRKLNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVER 912 (1219)
T ss_dssp THHHHHTTSCHHHHHHHHHHHHSCCCHHHHHHHHHHHHSSSCCCSBCCCCBCHHHHHHHHTCCCTTTSCTTCEEEEEEEE
T ss_pred cHHHHHhhCCHHHHHHHHhhhcCCcccchHHHHHHHHhccCCCCCcccCCCCHHHHHHhhccCcHhhCCCCCEEEEEEEE
Confidence 69999999999655 567899999999999999999999999999999999999999999999999999999999
Q ss_pred EecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccccccccccCCCCCCCCc
Q 039337 857 VQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNLDPYY 936 (1344)
Q Consensus 857 V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~dl~~~~~~~~~~~D~y~ 936 (1344)
|++||+||+|++|++||||+|+|++++++.+|.++|++||+|+|+|++||.++++|.||||.++++... ... .|
T Consensus 913 V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~~-~~~-----~~ 986 (1219)
T 3psi_A 913 FWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQY-VPI-----SY 986 (1219)
T ss_dssp ECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHHHC--------------
T ss_pred EecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHHhcchh-ccc-----cc
Confidence 999999999999999999999999983388999999999999999999999999999999999998532 110 12
Q ss_pred ccccccchHHHHHHHHH------HHHhhhccccccccCCCcccCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEe
Q 039337 937 HEERSSRQSEQEKARKE------KELAKKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVY 1010 (1344)
Q Consensus 937 ~~~~~~~~~e~~~~~k~------~~~~~~~~~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~ 1010 (1344)
+.+...|+.+++.++++ ++++++.+++|||+||+|||||+.||++||+++++|||||||||||.|||+|||||+
T Consensus 987 ~~~~~~~d~~~E~~d~~~~~~~~~k~~~~~~~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~vIRPSSkG~dhLtvTwKv~ 1066 (1219)
T 3psi_A 987 SKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHPYYFPFNGRQAEDYLRSKERGEFVIRQSSRGDDHLVITWKLD 1066 (1219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCcccchHHHHHHHHHHHHHhhhhhhhcccccccccCCCCCCCCHHHHHHHHhcCCCCCEEEeecCCCCCceEEEEEEc
Confidence 11223455444433321 144567899999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCcCcccccccCceeeeCCccccchHHHHHHHHhhhHHHHHHHhhCcccccCCHHHHHHHHHHHHH
Q 039337 1011 DGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKA 1090 (1344)
Q Consensus 1011 d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~~y~DLDEii~~~V~pm~~~v~~i~~h~kf~~g~~~e~e~~L~~~~~ 1090 (1344)
|||||||||+|.+|+| .++||++|+|++++|+||||||+|||+||+++|++|++|+||++|++++|++||++|++
T Consensus 1067 d~vyqHidV~E~~K~n-----~~slG~~L~I~~~~y~DLDEli~r~V~pm~~~v~e~~~h~kf~~g~~~eve~~L~~~k~ 1141 (1219)
T 3psi_A 1067 KDLFQHIDIQELEKEN-----PLALGKVLIVDNQKYNDLDQIIVEYLQNKVRLLNEMTSSEKFKSGTKKDVVKFIEDYSR 1141 (1219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEEEecCCcc-----ccccCceEEECCceECCHHHHHHHHHHHHHHHHHHHHhChhhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999 59999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcceEEEEeCCCCCcEEEEEEecCC--CCceeeEEEecCceEEcccccccHHHHHHHHHhhcCCCC
Q 039337 1091 EFPTRIVYGFGISHEHPGTFILTYIRST--NPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQ 1157 (1344)
Q Consensus 1091 ~np~~i~Y~f~~~~~~PG~f~L~~~~~~--~~~~e~i~v~p~gf~~~~~~~~~~~~L~~~fK~~~~d~~ 1157 (1344)
+||++|||+||+|++|||+|+|||+++. +++||||+|+|+||+||+++|+||++||||||+||++..
T Consensus 1142 ~nP~ri~Y~f~~~~~~PG~F~L~f~~~~~~~~~~~~v~v~p~Gf~~r~~~f~~~~~L~~~FK~~~~~~~ 1210 (1219)
T 3psi_A 1142 VNPNKSVYYFSLNHDNPGWFYLMFKINANSKLYTWNVKLTNTGYFLVNYNYPSVIQLCNGFKTLLKSNS 1210 (1219)
T ss_dssp ---------------------------------------------------------------------
T ss_pred hCCCcceEEEEeCCCCCCEEEEEEecCCCCCceeeeEEEccCeEEEcCccCcCHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999964 588999999999999999999999999999999999844
No 2
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-174 Score=1660.14 Aligned_cols=893 Identities=21% Similarity=0.339 Sum_probs=656.2
Q ss_pred ccccC-CCCCCCchhHHHHHHHHHHHHhcCcCcccccCCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCccceeeecchhh
Q 039337 9 LRKAL-AGPPTDGESIVDESTWIYNQLLSGTLPLFGQRGAGSPKEGHDLSISRDDIMRFLDLLHLQKLDIPFIAMYRKEE 87 (1344)
Q Consensus 9 ~~~~~-~~~~~~~~el~~ea~WI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vL~l~~~~~~eVPFIarYRKE~ 87 (1344)
.+..+ ++.+++++||++||+||+++||.+.+. ... ....+++++|.+||+||+++++||||||||||||
T Consensus 100 ~~~~~~~~~~~~~~el~eEa~WI~~~~~~~~~~-------~~~---~~~~~~~~aI~~vL~fi~~e~~EVPFIa~YRKe~ 169 (1030)
T 3psf_A 100 LRAGITDYGNMSSEDQELERNWIAEKISVDKNF-------DAN---YDLTEFKEAIGNAIKFITKENLEVPFIYAYRRNY 169 (1030)
T ss_dssp HGGGCTTTTCCCHHHHHHHHHHHHHHHHHHHCC-------CSS---CCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCGGG
T ss_pred hcccccCCCCCCHHHHHHHHHHHHHHHhhccCC-------Ccc---ccchhHHHHHHHHHHHHHhcCCcCchHHHHHhhh
Confidence 34555 889999999999999999999976421 110 1135688999999999998999999999999999
Q ss_pred hcccccccccccccCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhh
Q 039337 88 CLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRKSALQSYYKKRYEEESRRIYDETRLALNQQL 167 (1344)
Q Consensus 88 ~~~l~~~~~~~e~~~~~~~~~~~~~~l~~~~dLw~I~~ld~k~~~L~~RK~~l~~~~~k~~~~~~~~~~~~~~l~~~~~l 167 (1344)
+.+.+.. ..+|+ ++|||+|++||+||++|++||++|+++|++ +++++++
T Consensus 170 ~~~~~~~----------------~~~L~-~~dLW~I~~ld~k~~~L~~RK~~l~k~~e~--------------l~l~d~l 218 (1030)
T 3psf_A 170 ISSREKD----------------GFLLT-EDDLWDIVSLDIEFHSLVNKKDYVQRFYAE--------------LHIDDPI 218 (1030)
T ss_dssp SBCSSTT----------------SCBCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HCCCCHH
T ss_pred hccCCcc----------------cccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCChHH
Confidence 8542210 11333 569999999999999999999999999985 2467777
Q ss_pred HHHHHH--HHHhhhhhhhHhhhhcccccCCCCCCCCCCc----cCccCCCCcchHHHHHHcChHHHHHHhccChHHHhhh
Q 039337 168 FDSISK--SLEAAETEREVDDVDLKFNLHFPPGEVGVDE----GQYKRPKRSTKYSSCSKAGLWEVASKFGYSSEQLGLQ 241 (1344)
Q Consensus 168 ~~~~~~--~l~~a~t~eel~Di~~~~~l~y~~~~~~~~~----~~~kr~~r~t~y~~a~~~GL~~la~~fgls~~~f~~n 241 (1344)
+++++. .+..|+|+++|+|||+||+|+|+.++.+|.+ ++.||+.|++.|++||++||+.||++|||||+|||+|
T Consensus 219 ~~~il~~~~~~~a~t~eeLeDly~~~~~~y~~~l~~~~~~~~~~~~kk~~~~s~Y~~~r~~~l~~la~~fGLtp~qlaen 298 (1030)
T 3psf_A 219 VTEYFKNQNTASIAELNSLQDIYDYLEFKYANEINEMFINHTGKTGKKHLKNSSYEKFKASPLYQAVSDIGISAEDVGEN 298 (1030)
T ss_dssp HHHHHHHCC--------HHHHHHHHHHHHTHHHHHHC----------------CHHHHTTSTTHHHHHTTSSCHHHHHHH
T ss_pred HHHHHhhhcccccCCHHHHHHHHHhhcccchhhhHHhhhcccccccCCCccccHHHHHHHHhHHHHHHHhCCCHHHHHHH
Confidence 777643 3458999999999999999999976665532 2224556889999999999999999999999999999
Q ss_pred hhhc-ccCCCCCCCCCCHHHHHHhhhhhc-------CCCHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhceEEEEEEeC
Q 039337 242 LSLE-KMGDELEDPKETPEEMASNFKCAM-------FNSSQAVLQGARHMAAVEISCEPCVRKYVRSIFMDNAVVSTCPT 313 (1344)
Q Consensus 242 l~~~-~~~~~~~~~~~~p~~~A~~~i~~~-------~~t~e~vl~ga~~ilA~eis~dp~vR~~vR~~~~~~a~Ist~~T 313 (1344)
|..+ +++|+++++..+|+++|++|++++ |+|+++||+||++|+|++||+||.+|++||+.|+++|+|+|++|
T Consensus 299 l~~~~~~~~~~~d~~~~p~~~A~~~v~~~~~~~~~~~~~~e~aL~gAr~ilAe~is~dp~~R~~vR~~~~~~a~i~~~~t 378 (1030)
T 3psf_A 299 ISSQHQIHPPVDHPSSKPVEVIESILNANSGDLQVFTSNTKLAIDTVQKYYSLELSKNTKIREKVRSDFSKYYLADVVLT 378 (1030)
T ss_dssp HHHTSCSSCCCCCSSCCHHHHHHHHHHTTTTTCC-----CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSEEEEEEEC
T ss_pred HHhccccccCCCCCCCCHHHHHHHHhcccccccccCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHheEEEEEEEe
Confidence 9997 788999999999999999999976 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccccccCcCCCc--hHHHHHHhhhccccEEEEEecChhhhhhHHHHHHh-hhccCCCcchhhh
Q 039337 314 PDGDSAIDSFHQFAGVKWLREKPLRKFED--AQWLLIQKAEEEKLLQVTIKLPEDSLNKLFSDCKE-HYLSDGVSKSAQL 390 (1344)
Q Consensus 314 ~kg~~~id~~h~y~~~Kyl~~kpv~~l~~--~q~L~i~raE~egll~v~i~~~~~~~~~~~~~l~~-~~~~d~~s~~~~~ 390 (1344)
++|.+.+|.||+||+|||+.++|++.|.+ +|||+|+|||+||+|+|+|.++++ ..+++.|.. +|.++++|..++.
T Consensus 379 ~kG~~~~d~~~~Y~d~k~~~~k~~~h~~~~p~r~Lai~raE~eglL~v~i~~~~~--~~~~~~l~~~~~~~~~~s~~a~~ 456 (1030)
T 3psf_A 379 AKGKKEIQKGSLYEDIKYAINRTPMHFRRDPDVFLKMVEAESLNLLSVKLHMSSQ--AQYIEHLFQIALETTNTSDIAIE 456 (1030)
T ss_dssp HHHHHHCTTTSTTTTTTTBCCBCTTHHHHCTHHHHHHHHHHHTTSEEEEEEETTH--HHHHHHHHHHHTCCCCCSHHHHH
T ss_pred cCCcccccccccHHHHhhHhhCCchhhcccHHHHHHHHHhhhcCceEEEEecCcc--hHHHHHHHHHHhccccccchHHH
Confidence 99999999999999999999999888754 499999999999999999999985 246777777 6778888999999
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCCCceEeEeecCCCC
Q 039337 391 WNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDITPDEEAAPRVLACCWGPGK 470 (1344)
Q Consensus 391 wn~~r~~~l~~a~~~~L~P~~~revr~~L~~~Ae~~~i~~~~~nL~~~L~~~P~~~~~~~~~~~~~~~~rVlai~~dpg~ 470 (1344)
||.+|+++|++||++ |+|+|++|+|+.|+++|++++|++|++||+++|+||||+|. ...+..++||||++|.+.
T Consensus 457 wn~~r~~~i~da~kr-L~p~ie~e~r~~L~~~Ae~~ai~~f~~nL~~lL~~aP~~p~-----~~~g~~~~VlaldpG~~~ 530 (1030)
T 3psf_A 457 WNNFRKLAFNQAMDK-IFQDISQEVKDNLTKNCQKLVAKTVRHKFMTKLDQAPFIPN-----VRDPKIPKILSLTCGQGR 530 (1030)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSC-----TTSCCCCCEEEEECTTCC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----cccCCCCeEEEecCCCCC
Confidence 999999999999999 99999999999999999999999999999999999999984 234567899999555442
Q ss_pred ---CceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcCCCcchhhhHHHHHHHHHH
Q 039337 471 ---PETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFK 547 (1344)
Q Consensus 471 ---~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~t~s~~~l~~~~~~~v~~ 547 (1344)
+|||+||||++|+|+++..+ +++.. +++..+++.+.|.+||.+|+|+||||||+|++|.+|.+++.++|.+
T Consensus 531 ~~~~g~k~a~vd~~G~~l~~~~i---~~~~~---~~~~~~~~~~~l~~li~~~~~~~IaIGn~s~et~~l~~~l~~~i~~ 604 (1030)
T 3psf_A 531 FGADAIIAVYVNRKGDFIRDYKI---VDNPF---DKTNPEKFEDTLDNIIQSCQPNAIGINGPNPKTQKFYKRLQEVLHK 604 (1030)
T ss_dssp TTTSCEEEEEECTTSCEEEEEEE---CSCTT---CSSCCHHHHHHHHHHHHHHCCSEEEECCSSTHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCEEEEEEE---cCCCC---ChhhHHHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 38999999999999998553 32211 1223456678999999999999999999999998888877776653
Q ss_pred HHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCCCchhhHHHHHhhhhhcccceehhcccCCCcccccccccC
Q 039337 548 MVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMVATLCGPGREILSWKLCP 627 (1344)
Q Consensus 548 ~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~~~~~~R~avslaR~lqdPl~e~~~l~~~~~~~~~i~~~~ 627 (1344)
..-. .....+|+|++|+++||||||+|++|.+|||++|+++|+||||||||||||+|||+|+. ++++||+|||
T Consensus 605 ~~~~-----~~~~~~i~~~iV~e~gAsvYsaS~~A~~EfP~~d~~~R~AVSiaRrlQDPLaElvki~p--kdi~sigvg~ 677 (1030)
T 3psf_A 605 KQIV-----DSRGHTIPIIYVEDEVAIRYQNSERAAQEFPNKPPLVKYCIALARYMHSPLLEYANLTS--EEVRSLSIHP 677 (1030)
T ss_dssp TTCB-----CTTSCBCCEEECCCTTHHHHHTSHHHHHHSTTCCHHHHHHHHHHHHHHCHHHHHHTSCH--HHHHTSCCCT
T ss_pred hccc-----cccCCCccEEEecchHHHHHHhhHHHHHhCcCCCHHHHHHHHHHHHHhChHHHHhccCc--ccceeeeccc
Confidence 2100 01123589999999999999999999999999999999999999999999999999931 4679999999
Q ss_pred ccccCChhhhhhhhhhhhhcccccccccccccccccccccchhhccCCCHHHHHHHHHHH-HhcCCCCCHHHHhhccCCC
Q 039337 628 LENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSL-VRAGAIFTRKDFVTAHGLG 706 (1344)
Q Consensus 628 ~Q~~~~~~~l~~~l~~~~~~~vn~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r-~~~g~~~sr~~L~~v~~iG 706 (1344)
|||+|++++|.++|+.+|++|||.||||||+|+.|||.+++|||||||||+||++||+|| ++||+|+||+||++|+|||
T Consensus 678 yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG 757 (1030)
T 3psf_A 678 HQNLLSSEQLSWALETAFVDIVNLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILH 757 (1030)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHTTSSC
T ss_pred cccccCHHHHHHHHHHHHHhhccccCccHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999 5699999999999999999
Q ss_pred HHHHHhccCcEEEecCCC-CCCccccCCcCcCCCCCCCCHHHHHHHHHHHcCCCcCCCCCCh--hHHHHHHHHHHhcCh-
Q 039337 707 KKVFVNAVGFLRVRRSGQ-AASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDD--EDALEMAIEHVRDRP- 782 (1344)
Q Consensus 707 ~kvf~n~a~FlrI~~~~~-~~~~~~~~d~LD~TrIHPEsY~~A~kma~dal~~d~~~d~~~~--~~~~~~~v~~i~~~~- 782 (1344)
+|+|+||||||||++... ..+++...||||+||||||+|++|+|||+||++++++ |+.+. +..+..++++++.+|
T Consensus 758 ~k~fe~~agflrI~~~~~~~~~~~~~~~pLD~T~VHPEsY~~a~kma~dal~~~~~-di~~~~~~~~~~~~v~~l~~~p~ 836 (1030)
T 3psf_A 758 KTIFMNSAGFLYISWNEKRQKYEDLEHDQLDSTRIHPEDYHLATKVAADALEYDPD-TIAEKEEQGTMSEFIELLREDPD 836 (1030)
T ss_dssp HHHHHHHTTTEECCCCC------CTTCCGGGGSSCCGGGHHHHHHHHHHHTTCCHH-HHHHHHHHTCTTHHHHHHHHCTT
T ss_pred HHHHHhccCeEEEcccccccccccCCCCCCcCCCCCcccHHHHHHHHHHHhCCCHH-HhhccccccchhhHHHHHHhCcc
Confidence 999999999999996542 1233455799999999999999999999999987642 11100 112456889999885
Q ss_pred --hhhhccChHHHHHH---hhccCccchHHHHHHHHhcCccCccCCCCCCCchhhhhhhccCCcccccCCeEEEEEEEEE
Q 039337 783 --DLLKTYLLDRHIKE---KKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRV 857 (1344)
Q Consensus 783 --~kl~~ldl~~~~e~---~~~~~~~~tL~~I~~EL~~p~~D~R~~~~~p~~~e~f~~lTget~~~l~~G~iV~g~V~~V 857 (1344)
++|++|+|++|+++ +.+++|++||+||+.||.+||+|+|.+|++|++++.|.||||+++++|++|++|+|+|++|
T Consensus 837 ~~~~l~~l~l~~~a~~l~~~~g~~k~~TL~dI~~EL~~P~~D~R~~f~~~~~~e~~~~LTget~~~l~~G~iv~G~V~~V 916 (1030)
T 3psf_A 837 RRAKLESLNLESYAEELEKNTGLRKLNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERF 916 (1030)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHHHCCC-----------------
T ss_pred HHHHHHhCCHHHHHHHHhhccCCcccchHHHHHHHHhccCCCCCcccCccchhhhhhhhccccHHHhcCCCEEEEEEEEE
Confidence 69999999999655 5678999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccccccccccCCCCC-CCCc
Q 039337 858 QGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEMRNNRYQHCQNL-DPYY 936 (1344)
Q Consensus 858 ~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~dl~~~~~~~~~~~-D~y~ 936 (1344)
++||+||+|++|++||||+|+|++.+++.+|.++|++||+|+|+|++||.++++|.||||.++++.........+ +.||
T Consensus 917 ~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~~~~~~~~~~~~~w 996 (1030)
T 3psf_A 917 WHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIW 996 (1030)
T ss_dssp -------------------------------------------------------------------------CCCTTTB
T ss_pred ccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHHhcccccccccccCcccC
Confidence 999999999999999999999999833789999999999999999999999999999999999986321102222 3445
Q ss_pred ccccccchHHHHHHHHH------HHHhhhccccccccCCCc
Q 039337 937 HEERSSRQSEQEKARKE------KELAKKHFKERLIVHPCF 971 (1344)
Q Consensus 937 ~~~~~~~~~e~~~~~k~------~~~~~~~~~~RvI~HP~F 971 (1344)
| .+++.++++ +++++..+++|||+||+|
T Consensus 997 d-------~~~e~~D~~~~~~~~~k~~~~~~~~RvI~HP~f 1030 (1030)
T 3psf_A 997 D-------LKQELEDAEEERKLMMAEARAKRTHRVINHPYY 1030 (1030)
T ss_dssp C-------HHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred c-------HHHHHHHHHHHHHHHHHHHhhcccccccCCCCC
Confidence 4 444433321 145566899999999998
No 3
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=100.00 E-value=8.7e-140 Score=1314.60 Aligned_cols=701 Identities=22% Similarity=0.297 Sum_probs=646.7
Q ss_pred CCHHHHHHHHHHhhhCCCccceeeecchhhhcccccccccccccCCCCCCccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 039337 58 ISRDDIMRFLDLLHLQKLDIPFIAMYRKEECLSLLKDLEQNEVNNDNNDDFERTPTLKWHKVLWAIHDLDKKWLLLQKRK 137 (1344)
Q Consensus 58 ~~~~~I~~vL~l~~~~~~eVPFIarYRKE~~~~l~~~~~~~e~~~~~~~~~~~~~~l~~~~dLw~I~~ld~k~~~L~~RK 137 (1344)
+...+|+++|+||++ |+|||||||||||+|+.|+++ +||+|.+++.+|++|++||
T Consensus 20 ~~~~~v~~~~~ll~e-g~tVPFIarYRKe~tg~Ld~~------------------------~lr~i~~~~~~~~~L~~Rk 74 (785)
T 3bzc_A 20 VQPQQVAAAVALLDE-GSTVPFIARYRKEVTGSLDDT------------------------QLRMLEERLRYLRELEERR 74 (785)
T ss_dssp CCHHHHHHHHHHHHT-TCCHHHHHHHCHHHHTSCCHH------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhC-CCCCCchHHhhhHhhCCCCHH------------------------HHHHHHHHHHHHHHHHHHH
Confidence 688999999999964 899999999999999998732 8999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhhhhHhhhhcccccCCCCCCCCCCccCccCCCCcchHH
Q 039337 138 SALQSYYKKRYEEESRRIYDETRLALNQQLFDSISKSLEAAETEREVDDVDLKFNLHFPPGEVGVDEGQYKRPKRSTKYS 217 (1344)
Q Consensus 138 ~~l~~~~~k~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~a~t~eel~Di~~~~~l~y~~~~~~~~~~~~kr~~r~t~y~ 217 (1344)
++|+++|++ ++.|++++.+.|..|+|+++|+|||+|| ||||+|+|+
T Consensus 75 ~~il~~i~~-----------------qg~lt~~l~~~i~~a~t~~eleDly~py-----------------k~krrtka~ 120 (785)
T 3bzc_A 75 GAILASIEE-----------------QGKLTPELARDIKLADTKTRLEDLYLPY-----------------KQKRRTKGQ 120 (785)
T ss_dssp HHHHHHHHH-----------------TTCCCHHHHHHHHHCCSHHHHHHHHGGG-----------------SCCCCCHHH
T ss_pred HHHHHHHHH-----------------ccCCCHHHHHHHHhcCcHHHHHHHHhcc-----------------CCCCCCHHH
Confidence 999999985 4677888999999999999999999998 789999999
Q ss_pred HHHHcChHHHHHHhccChHHHhhhhhhcccCCCCCCCCCCHHHHHHhhhhh--cCCCHHHHHHHHHHHHHHHhcCChhHH
Q 039337 218 SCSKAGLWEVASKFGYSSEQLGLQLSLEKMGDELEDPKETPEEMASNFKCA--MFNSSQAVLQGARHMAAVEISCEPCVR 295 (1344)
Q Consensus 218 ~a~~~GL~~la~~fgls~~~f~~nl~~~~~~~~~~~~~~~p~~~A~~~i~~--~~~t~e~vl~ga~~ilA~eis~dp~vR 295 (1344)
+|+++||+|||+.+. .++..+|+++|++|+++ +|+|+++||+||++|+|++||+||.+|
T Consensus 121 ~a~e~GLeplA~~l~-------------------~~~~~~p~~~A~~~v~~~~~~~~~~~al~ga~~ilae~is~~~~~r 181 (785)
T 3bzc_A 121 IALEAGLGALADALF-------------------DDPTLVPESEAARFVDAEKGFADVKAVLEGAKYILMERFAEDATLL 181 (785)
T ss_dssp HHHHTTTHHHHHHHH-------------------HCTTSCHHHHHHTTCCSSSSCCSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHH-------------------cCCCCCHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999986 24557899999999997 799999999999999999999999999
Q ss_pred HHHHHHhhceEEEEEEeCCCCCcccccccccccccccccccCcCCCchHHHHHHhhhccccEEEEEecC-hhhh-hh-HH
Q 039337 296 KYVRSIFMDNAVVSTCPTPDGDSAIDSFHQFAGVKWLREKPLRKFEDAQWLLIQKAEEEKLLQVTIKLP-EDSL-NK-LF 372 (1344)
Q Consensus 296 ~~vR~~~~~~a~Ist~~T~kg~~~id~~h~y~~~Kyl~~kpv~~l~~~q~L~i~raE~egll~v~i~~~-~~~~-~~-~~ 372 (1344)
++||+.|+++|+|+|++|++|.++++.||+||+|+ +|++++++||||+|+|||+||+|+|+|+++ ++.. .. ++
T Consensus 182 ~~~R~~~~~~~~i~~~~~~~~~~~~~~~~~Y~~~~----e~v~~~~~hr~Lai~rgE~e~~L~v~i~~~~~~~~~~~~~~ 257 (785)
T 3bzc_A 182 DKLRVFMKNEATLTARVVPGKEQEGAKFSDYFEHD----EPLKSAPSHRALAIFRGRNEGVLSASLKVGEEAPGTLHPCE 257 (785)
T ss_dssp HHHHHHHHHHCEEEEEECGGGCGGGGGGGGGSEEE----EEGGGCCHHHHHHHHTSCSSCSEEEEEECSCCCTTSCCHHH
T ss_pred HHHHHHHHhCeEEEEEEecCCccccccccchhhhh----hhHhhCCHHHHHHHHHHHHCCceEEEEecCccccccHHHHH
Confidence 99999999999999999998899999999999986 899999999999999999999999999998 4321 13 67
Q ss_pred HHHHhhh-ccCCCcchhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCC
Q 039337 373 SDCKEHY-LSDGVSKSAQLWNDQRELILKDALDNFLLPSMVKEARSLMSGRAKSWLLMEYGKALWNKVSVGPYQRKDNDI 451 (1344)
Q Consensus 373 ~~l~~~~-~~d~~s~~~~~wn~~r~~~l~~a~~~~L~P~~~revr~~L~~~Ae~~~i~~~~~nL~~~L~~~P~~~~~~~~ 451 (1344)
..|.+.| .+++. +.|+.+|+++|++||+++|+|+|++|+|+.|+++|++++|++|++||+++|++|||+++
T Consensus 258 ~~l~~~~~~~d~~----~~~~~~~~~~v~~a~~r~l~p~~e~e~r~~L~~~Ae~~ai~vf~~nL~~lLl~aP~~~~---- 329 (785)
T 3bzc_A 258 VMIAERFGLSNQG----RAADKWLAEVVRWTWKVKLYTHLETDLFGELRDGAEDEAISVFARNLHDLLLAAPAGPR---- 329 (785)
T ss_dssp HHHHHHTTCCCCS----CSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSC----
T ss_pred HHHHHHcCcccCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----
Confidence 8888888 77542 57999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCceEeEeecCCCC-CceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcCC
Q 039337 452 TPDEEAAPRVLACCWGPGK-PETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAV 530 (1344)
Q Consensus 452 ~~~~~~~~rVlai~~dpg~-~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~ 530 (1344)
+|||+ |||+ +|||+||||++|+|+++.. +|++ .++++++++.+.|.+||.+|+|++|||||+
T Consensus 330 --------~vlg~--dpg~r~g~k~a~vd~~G~~l~~~~---iy~~----~~~~~~~~~~~~l~~li~~~~~~~IaIGng 392 (785)
T 3bzc_A 330 --------ATLGL--DPGLRTGVKVAVVDATGKLLDTAT---VYPH----APKNQWDQTLAVLAALCAKHQVELIAIGNG 392 (785)
T ss_dssp --------CEEEE--ECCSSSCEEEEEECTTSCEEEEEE---ECCS----GGGCCHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred --------eEEEE--CCCCcCceEEEEECCCCCEEEEEE---EecC----CchhHHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 89997 9998 9999999999999999844 3444 244566788999999999999999999999
Q ss_pred CcchhhhHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCCCchhhHHHHHhhhhhcccceeh
Q 039337 531 NLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQKGNVKRAVALGRYLQNPLAMV 610 (1344)
Q Consensus 531 t~s~~~l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~~~~~~R~avslaR~lqdPl~e~ 610 (1344)
|+|+ +++.+|.+++++.. ..++++++|++++||||++|+.|++|||++|+++|+||||||+|||||+||
T Consensus 393 tasr-----et~~~v~~l~~~~~------~~~i~~v~v~e~gArvy~as~~A~~e~p~~d~~~R~avsiAR~lqDpl~el 461 (785)
T 3bzc_A 393 TASR-----ETDKLAGELIKKYP------GMKLTKIMVSEAGASVYSASELAAKEFPELDVSLRGAVSIARRLQDPLAEL 461 (785)
T ss_dssp TTHH-----HHHHHHHHHHHHCG------GGCCEEEEECCHHHHHHHHSHHHHHHCTTSCHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCH-----HHHHHHHHHHHhcc------cCCCCEEEEcCCcCCHHHHHHHHhhhhhccCHHHHHHHHHHHhccCCeEEE
Confidence 9887 77889999887642 135899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCcccccccccCccccCChhhhhhhhhhhhhcccccccccccccccccccccchhhccCCCHHHHHHHHHHHHhc
Q 039337 611 ATLCGPGREILSWKLCPLENFLTPDEKYGMIEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRA 690 (1344)
Q Consensus 611 ~~l~~~~~~~~~i~~~~~Q~~~~~~~l~~~l~~~~~~~vn~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~ 690 (1344)
|++ ++++|++|+|||++++++|.++|+.+++++||.+|||||+|+. ++|++||||||++|++||+||+++
T Consensus 462 v~i-----dp~sig~g~~Q~~v~~~~l~~~L~~~~~~~vn~~gVdiNtAs~-----~~L~~v~GiG~~~A~~Iv~yR~~~ 531 (785)
T 3bzc_A 462 VKI-----EPKSIGVGQYQHDVSQLKLARSLDAVVEDCVNAVGVDVNTASA-----ALLARISGLNSTLAQNIVAHRDAN 531 (785)
T ss_dssp TTS-----CGGGGTCSTTGGGSCHHHHHHHHHHHHHHHHHHHCEETTTCCH-----HHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred ecc-----chhhccccccccccCHHHHHHhhhhHHHhhhcccccccCcCCH-----HHHhhcCCCCHHHHHHHHHHHHhc
Confidence 999 8999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CCCCCHHHHhhccCCCHHHHHhccCcEEEecCCCCCCccccCCcCcCCCCCCCCHHHHHHHHHHHcCCCcCCCCCChhHH
Q 039337 691 GAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGQAASSSQFIDLLDDTRIHPESYGLAQELAKEVYNRDIEGDLNDDEDA 770 (1344)
Q Consensus 691 g~~~sr~~L~~v~~iG~kvf~n~a~FlrI~~~~~~~~~~~~~d~LD~TrIHPEsY~~A~kma~dal~~d~~~d~~~~~~~ 770 (1344)
|+|.||+||++|+|||+++|++|++||+|.... +|||+|+||||+|++|++|++++ ..+
T Consensus 532 G~f~sr~~L~~V~giG~k~~ekl~~FL~i~G~~---------~pLD~t~VHPEsY~~a~kil~~~-g~~----------- 590 (785)
T 3bzc_A 532 GAFRTRDELKKVSRLGEKTFEQAAGFLRVMNGD---------NPLDASAVHPETYPLVQRIAADT-ERD----------- 590 (785)
T ss_dssp CCCSSGGGGGGSTTCCHHHHHHHGGGEECTTSS---------CGGGGSSCCGGGHHHHHHHHHHH-TCC-----------
T ss_pred CCCCCHHHHHhcCCCCHHHHHHhhheEEECCcc---------cccccCcCCHHHHHHHHHHHHHc-CCC-----------
Confidence 999999999999999999999999999999765 99999999999999999999987 432
Q ss_pred HHHHHHHHhcChhhhhccChHHHHHHhhccCccchHHHHHHHHhcCccCccCCCCCCCchhhhhhhccCCcccccCCeEE
Q 039337 771 LEMAIEHVRDRPDLLKTYLLDRHIKEKKRENKRETLYLIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVV 850 (1344)
Q Consensus 771 ~~~~v~~i~~~~~kl~~ldl~~~~e~~~~~~~~~tL~~I~~EL~~p~~D~R~~~~~p~~~e~f~~lTget~~~l~~G~iV 850 (1344)
+++++.++.+|+.|+++.|++ ...+++||.+|+.||.+|++|+|..|..|.+.+.+ ++.+++++|++|
T Consensus 591 ----~e~li~~~~~Lrsl~~a~Ya~---~hfGl~tl~rIi~eL~kpg~d~R~~~~~~~~~~~v-----e~~~~l~vG~iv 658 (785)
T 3bzc_A 591 ----IRSLIGDSAFLKRLDPKKFTD---ETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGV-----ESLKDLKPGMVL 658 (785)
T ss_dssp ----HHHHTTCHHHHHHSCGGGTCC---SSSCHHHHHHHHHHHHSTTCCCSCCCCTTTTCCCC-----CSSTTCCTTCBC
T ss_pred ----HHHHhhhHHHHHhcCHHHHhh---hcCCcHHHHHHHHHHhccCCChhhhcccchhhhcc-----cchhhcCCCCEE
Confidence 234455677899999999984 34579999999999999999999999999987776 689999999999
Q ss_pred EEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccc
Q 039337 851 QATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESE 920 (1344)
Q Consensus 851 ~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~d 920 (1344)
+|+|++|++||+||+|+.+++||||+|+|++. ++.+|.+.|++||.|+|+|++||.++++|+|||+.++
T Consensus 659 ~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~-~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 659 EGVVTNVTNFGAFVDIGVHQDGLVHISALSEK-FVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp CCEEEEEETTEEEEECSSSSEEEEETTTSCSS-CCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred EEEEEEEecCCeEEEeCCCcEEEEEHHHcCcc-ccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 99999999999999999999999999999997 8899999999999999999999999999999999765
No 4
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=100.00 E-value=1.1e-65 Score=544.26 Aligned_cols=189 Identities=28% Similarity=0.442 Sum_probs=183.7
Q ss_pred ccccccCCCcccCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 962 KERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 962 ~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
.+|||+||+|||||+.|||+||+++++|||||||||||.|||+|||||+||+||||||+|.+|++ .++||++|+|
T Consensus 2 ~~RvI~HP~F~n~~~~qAe~~L~~~~~Ge~iIRPSSkg~dhLtvTwKv~d~v~qHidI~E~~K~~-----~~slG~~L~i 76 (197)
T 3or8_A 2 MHRVINHPYYFPFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKEN-----PLALGKVLVV 76 (197)
T ss_dssp --CCCCCTTEECCCHHHHHHHHTTSCTTCEEEEECSSCTTEEEEEEEEETTEEEEEEEEEESCSS-----TTSCCSEEEE
T ss_pred CCcccCCCCcCCCCHHHHHHHHhcCCCCCEEEeeCCCCCCcEEEEEEECCCcEEEEEEEEcCCcc-----ccccCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999 5999999999
Q ss_pred CCccccchHHHHHHHHhhhHHHHHHHhhCcccccCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCC--C
Q 039337 1042 GEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRST--N 1119 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~pm~~~v~~i~~h~kf~~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~--~ 1119 (1344)
++++|+||||||++||+||+++|++|++|+||++|+++|+|++|++|+++||++|||+||++++|||+|+|+|+|+. +
T Consensus 77 ~~~~y~DLDElI~~~V~pm~~~v~el~~h~kf~~g~~~eve~~L~~ek~~nP~~i~Y~f~~~~~~PG~F~L~~~~~~~~~ 156 (197)
T 3or8_A 77 EGQRYHDLDQIIVEYLQNKIRLLNELTSNEKFKAGTKKEVVKFIEDYSKVNPKKSVYYFSLNYENPGWFYLIFKLNAESK 156 (197)
T ss_dssp TTEEESSHHHHHHHTHHHHHHHHHHHHTSTTEECSCHHHHHHHHHHHHHHCTTCCEEEEEECTTSTTEEEEEEESSTTSC
T ss_pred CCeEECCHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCCEEEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred CceeeEEEecCceEEcccccccHHHHHHHHHhhcCC
Q 039337 1120 PHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDD 1155 (1344)
Q Consensus 1120 ~~~e~i~v~p~gf~~~~~~~~~~~~L~~~fK~~~~d 1155 (1344)
+++|||+|+|+||+|++++|+||++||+|||+||++
T Consensus 157 v~~~~v~v~p~Gf~~~~~~f~~l~~L~~~FK~~~~~ 192 (197)
T 3or8_A 157 LYIWNVKLTHTGFFLVNYNYPTVIQLCNGFKTLLKS 192 (197)
T ss_dssp EEEEEEEECSSSEEETTEEESSHHHHHHHHHHHTSC
T ss_pred eeEEEEEEecCeEEEcCccCCCHHHHHHHHHHHHhh
Confidence 679999999999999999999999999999999998
No 5
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=100.00 E-value=2.1e-50 Score=424.32 Aligned_cols=174 Identities=30% Similarity=0.515 Sum_probs=164.5
Q ss_pred hhccccccccCCCcccCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCc
Q 039337 958 KKHFKERLIVHPCFQNVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 958 ~~~~~~RvI~HP~F~n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
.|.+++|+|+||+|+|+|+.|||+||++++ |||||||||+ .|||+|||||+||+|+||+|.|++|
T Consensus 4 ~k~~~~R~I~HP~F~n~s~~qAe~~L~~~~-G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~k------------- 68 (178)
T 2xp1_A 4 MKYTNPRFYKHPLFKNFNVTESENYLRSST-DDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHSE------------- 68 (178)
T ss_dssp CCSSCCGGGGSTTEECCCHHHHHHHHHHSS-CCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECSS-------------
T ss_pred cceeeeeeccCCCcCCCCHHHHHHHHhcCC-CCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECCC-------------
Confidence 467999999999999999999999999987 9999999999 6899999999999999999999774
Q ss_pred eeeeCCccccchHHHHHHHHhhhHHHHHHHhhCcccccCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC
Q 039337 1038 TLKIGEDTFEDLDEVVDRYIDPLVSHLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS 1117 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~pm~~~v~~i~~h~kf~~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~ 1117 (1344)
.|+||+++|+||||||++||+||++++++|++||||+. +++++|++|+++ ||++|||+||+++++||+|+|+|. +
T Consensus 69 ~l~ig~~~fedLDElI~~yv~pm~~~~~~~~~h~kf~~-s~~~~e~~L~~~---~p~~~~Y~f~~s~~~PG~f~l~~~-~ 143 (178)
T 2xp1_A 69 HYTCSNKHFEDIDEVISVYVRPILRNLKSIKAHAKYFN-SPEDAEKLLSSF---DGSKVVYAFYFSRKYPGKLTFAYN-N 143 (178)
T ss_dssp CEEETTEEESSHHHHHHHTHHHHHHHHHHHHHSTTBCS-CTTTSHHHHHTC---CSSSCEEEEEECSSSTTEEEEEEE-S
T ss_pred EEEECCcEECCHHHHHHHHHHHHHHHHHHHHhCCccCC-CHHHHHHHHHHh---CCCCceEEEEecCCCCCeEEEEEc-C
Confidence 36899999999999999999999999999999999998 889999999877 999999999999999999999997 5
Q ss_pred CCCceeeEEEecCceEEcccccccHHHHHHHHHhh
Q 039337 1118 TNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRH 1152 (1344)
Q Consensus 1118 ~~~~~e~i~v~p~gf~~~~~~~~~~~~L~~~fK~~ 1152 (1344)
.++++|||+|+ +||+|+++.|+||++||+|||+.
T Consensus 144 ~~~~~e~i~V~-~g~~~~~~~f~sl~~L~~~fK~~ 177 (178)
T 2xp1_A 144 GSILEEYIGVS-DMLTYNNSTFKDIDSFVAYRKRL 177 (178)
T ss_dssp SSEEEEEEEES-SSEEETTEEESSHHHHHHHHHC-
T ss_pred CCCceeeEEEc-cCCEEcCcCCcCHHHHHHHHhhc
Confidence 57899999999 79999999999999999999974
No 6
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.47 E-value=6.4e-15 Score=165.66 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=120.1
Q ss_pred ccCCeEEEEEEEEEecccEEEEeC--CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecccc
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLE--SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM 921 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~--~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~dl 921 (1344)
.++|++|.|+|++|++||+||+|+ .|++||||+|+++++ ++.++.+.|++||.|.|+|+++|.++.+|+||++...-
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~-~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVAST-WVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSS-CCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcc-cccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 468999999999999999999998 699999999999998 78899999999999999999999999999999986321
Q ss_pred ccccccCCCCCCCCcccccccchHHHHHHHHHHHHhhhccccccccCCC-cccCCHHHHHHHhhcCCCCcEEEecCCCCC
Q 039337 922 RNNRYQHCQNLDPYYHEERSSRQSEQEKARKEKELAKKHFKERLIVHPC-FQNVTADEAMKLLSAKEPGESIIRPSSRGP 1000 (1344)
Q Consensus 922 ~~~~~~~~~~~D~y~~~~~~~~~~e~~~~~k~~~~~~~~~~~RvI~HP~-F~n~~~~qAe~~L~~~~~Gd~viRPSSkG~ 1000 (1344)
. .|.... +..+ ..+ .+..++.|.. ..+++..++.+.
T Consensus 88 ~-------------------~~~~~~-~~~~-~g~----~v~g~v~~v~~~~G~~~ee~~~~------------------ 124 (275)
T 3aev_A 88 Q-------------------QRKAKL-QEFK-RAQ----KAENLLRLAAEKLGKDFEAAWRE------------------ 124 (275)
T ss_dssp H-------------------HHHHHH-HHHH-HHH----HHHHHHHHHHHHHTCCHHHHHHH------------------
T ss_pred c-------------------hhHHHH-Hhcc-CCC----eEEEEEEEchhhcCCCHHHHHHH------------------
Confidence 1 121110 0011 111 2233333333 444466666555
Q ss_pred CceEEEEEEeCceeeE-EEEeecCCCCcCcccccccCceeeeCCccccchHHHHHHHHhhhHHHHHH---HhhCcccccC
Q 039337 1001 SYLTLTLKVYDGVYAH-KDIIEGGKDHKDIKSLVGIGKTLKIGEDTFEDLDEVVDRYIDPLVSHLKA---MLSYRKFRKG 1076 (1344)
Q Consensus 1001 d~L~vTwKv~d~v~~H-idV~E~~K~~~~~~~~~sLG~~L~i~~~~y~DLDEii~~~V~pm~~~v~~---i~~h~kf~~g 1076 (1344)
++|++.+ .|+| .+..+....+. .++.+.| |..+.+++|+|+|.+|++|+.-+++. |..|.+ +|
T Consensus 125 ----~~w~l~~-~~g~~~~afk~a~~~~-----~~~l~~l-i~~~~~~~L~e~i~~~i~~~~v~i~~~i~~~~~~~--dG 191 (275)
T 3aev_A 125 ----VWVPLEE-EWGEVYAAFEDAAKDG-----IEVLKGH-VPDEWLPVLKEIVENYVEVPTVTIDAEFEITVPKP--NG 191 (275)
T ss_dssp ----THHHHHH-HHSSHHHHHHHHHHHC-----GGGGBTT-BCGGGHHHHHHHHHHHCCCC-------------------
T ss_pred ----HHHHHHH-HhCCHHHHHHHHhhcC-----cHHHHhh-CCHHHHHHHHHHHHHhCCCCceEEEEEEEEEecCC--Ch
Confidence 4555555 6677 56666555432 4677888 98899999999999999999999997 555544 22
Q ss_pred CHHHHHHHHH
Q 039337 1077 SKAEVDELLR 1086 (1344)
Q Consensus 1077 ~~~e~e~~L~ 1086 (1344)
.+.+.+.|+
T Consensus 192 -v~~ik~al~ 200 (275)
T 3aev_A 192 -VEIIKEALI 200 (275)
T ss_dssp ----------
T ss_pred -HHHHHHHHH
Confidence 344555554
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.32 E-value=3.6e-12 Score=128.17 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=73.5
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccc
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESE 920 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~d 920 (1344)
.++++|++|.|+|++|++||+||+|+.+++||||+|++++. ++.++.+.|++||.|+|+|++||.++.+|.||++...
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~-~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~ 80 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHG-FVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ 80 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSS-CCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcc-cccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 46899999999999999999999999999999999999998 7888999999999999999999998999999999754
No 8
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.28 E-value=3.5e-12 Score=119.40 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=68.5
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCC--CeEEEEece-ecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEec
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLES--GLAGMLMKE-DYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRE 918 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~--gi~GlIh~s-~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~ 918 (1344)
...++|+++.|+|+ |++||+||+|+. +++||||+| +++++ +..++++.+ +||.|+|+|+++|.++.+|+||+|.
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~-~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMD-RYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHH-HHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcc-cccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 34679999999999 999999999974 799999999 99988 667788888 9999999999999999999999986
Q ss_pred c
Q 039337 919 S 919 (1344)
Q Consensus 919 ~ 919 (1344)
.
T Consensus 84 ~ 84 (88)
T 1luz_A 84 M 84 (88)
T ss_dssp E
T ss_pred c
Confidence 3
No 9
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.28 E-value=5.5e-12 Score=123.10 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=72.7
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
.++++|++|+|+|++|++||+||+|+.+++||||++++++. +..++.+.|++||.|+|+|++||.++.+|.||++..
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~-~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRD-RVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAK 103 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSS-SSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETTSS
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcc-cccChhhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 57899999999999999999999999999999999999998 777899999999999999999999999999999864
No 10
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.28 E-value=1.3e-11 Score=113.57 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=66.7
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
++++|++|.|+|++|++||+||+|+.+++||||+|++++. +. +.|++||.|+|+|+++|.++.+|.||+++.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~-~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISL-RL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSC-CG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcc-cc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4789999999999999999999999999999999999986 33 689999999999999999999999999864
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.27 E-value=7.3e-12 Score=132.56 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=59.8
Q ss_pred ccCCeEEEEEEEEEecccEEEEe--CCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 844 LAEGRVVQATVRRVQGQRAICVL--ESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L--~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
+++|++|.|+|++|++||+||+| ..|++||||+|+|++. ++.++.+.|++||.|+|+|++||.++.+|+||+|..
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~-~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~ 89 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRR-RIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRV 89 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCc-ccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 47999999999999999999999 5789999999999998 788999999999999999999999999999999863
No 12
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.25 E-value=1.8e-11 Score=120.54 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=72.0
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
..+++|++|.|+|++|++||+||+|+++++||||+|+++++.+..++.+.|++||.|+|+|+++|.++.+|.||++..
T Consensus 26 ~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk~~ 103 (115)
T 2khi_A 26 KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQC 103 (115)
T ss_dssp CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCCCC
T ss_pred hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEEec
Confidence 468899999999999999999999999999999999998743567888999999999999999999999999999874
No 13
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.24 E-value=1.6e-11 Score=129.41 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=62.8
Q ss_pred cCCeEEEEEEEEEecccEEEEeC--CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 845 AEGRVVQATVRRVQGQRAICVLE--SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 845 ~~G~iV~g~V~~V~~~g~fV~L~--~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
++|++|.|+|++|++||+||+|+ .|++||||+|+|++. ++.++.+.|++||.|+|+|++||.++.+|+||+|..
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~-~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~ 89 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRR-RIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRV 89 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC---------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCc-ccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEec
Confidence 48999999999999999999995 789999999999998 788999999999999999999999999999999864
No 14
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*
Probab=99.22 E-value=8.4e-11 Score=131.82 Aligned_cols=172 Identities=18% Similarity=0.164 Sum_probs=128.9
Q ss_pred ccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 966 IVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
-.+|||+ +++-.+||++|.. .+.|+++||+|++.+...+++++. ++-+.|+.|.... ++ .|.|. +
T Consensus 3 ~~~~Wy~g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~-~~~v~H~~I~~~~--~g----~~~l~-----~ 70 (254)
T 1a81_A 3 NHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAH-GRKAHHYTIEREL--NG----TYAIA-----G 70 (254)
T ss_dssp TSSTTBCSSCCHHHHHHHHHHTTCCTTEEEEEECSSSTTCEEEEEEE-TTEEEEEEEEECT--TS----CEEET-----T
T ss_pred ccCccccCCCCHHHHHHHHhcCCCCCcEEEEEecCCCCCCEEEEEEE-CCeeEEEEEEEcC--CC----CEEeC-----C
Confidence 3689999 9999999999954 589999999999988889999996 5677899998632 21 13332 3
Q ss_pred CccccchHHHHHHHHhhhH------------------------------------------------------HHHH---
Q 039337 1043 EDTFEDLDEVVDRYIDPLV------------------------------------------------------SHLK--- 1065 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~pm~------------------------------------------------------~~v~--- 1065 (1344)
+..|.+|.|||..|..... ..++
T Consensus 71 ~~~F~sl~eLv~~y~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~i~~~~l~~~v~~~w~~~~~~l~~~~~~~~p~~~~~~ 150 (254)
T 1a81_A 71 GRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKLI 150 (254)
T ss_dssp SCCBSSHHHHHHHHTTCCTTSSSCCCEECCCCSSCCCCCCSSHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhCCCCceECCccccCCCCCCCCccchhcchHHHHHHHHHHHHHHhccchhhhhcccCCchhhhcc
Confidence 6899999999999865310 0000
Q ss_pred ---HHhhCcccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEE--ccccc
Q 039337 1066 ---AMLSYRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKF--RKRMF 1139 (1344)
Q Consensus 1066 ---~i~~h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~--~~~~~ 1139 (1344)
.+..++.|. .-+++++|++|..+...+. .|-+-.+ ..||.|.|++..+.+++|-.|..+++|+++ ....|
T Consensus 151 ~~~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G---~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F 226 (254)
T 1a81_A 151 ATTAHEKMPWFHGKISREESEQIVLIGSKTNG---KFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKKF 226 (254)
T ss_dssp HHTSGGGSTTEEEECCHHHHHHHHHSSCCCTT---CEEEEEC-SSSSCEEEEEEETTEEEEEEEEECTTSCEECTTSCCB
T ss_pred cccccccCCccccCCCHHHHHHHHHhcCCCCc---eEEEEec-CCCCCEEEEEEECCEEEEEEEEEcCCCCEEecCCccc
Confidence 111234444 2378999999954322222 3666667 899999999999888899999988888666 48999
Q ss_pred ccHHHHHHHHHhhc
Q 039337 1140 EDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~~ 1153 (1344)
+||.+||+||+++.
T Consensus 227 ~sl~~LV~~y~~~~ 240 (254)
T 1a81_A 227 DTLWQLVEHYSYKA 240 (254)
T ss_dssp SCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHCC
Confidence 99999999999775
No 15
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-11 Score=117.06 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=69.8
Q ss_pred CcccccCCeEEEEEEEEEecccEEEEeCC---CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEE
Q 039337 840 TEDTLAEGRVVQATVRRVQGQRAICVLES---GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVC 916 (1344)
Q Consensus 840 t~~~l~~G~iV~g~V~~V~~~g~fV~L~~---gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSl 916 (1344)
....+++|++|.|+|++|++||+||+|+. +++||||+|+++++.++.++.+.|++||.|+|+|+++|. .+|.||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 45578999999999999999999999986 899999999994433677888999999999999999997 4999999
Q ss_pred eccc
Q 039337 917 RESE 920 (1344)
Q Consensus 917 k~~d 920 (1344)
|..+
T Consensus 84 k~~~ 87 (103)
T 2eqs_A 84 KDVD 87 (103)
T ss_dssp TTBC
T ss_pred eecc
Confidence 8743
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=120.87 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=70.4
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCC--cEEEEEEec
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNR--YQVFLVCRE 918 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~--~~I~LSlk~ 918 (1344)
..+++|++|.|+|++|++||+||+|+. +++||||++++++. ++.++.+.|++||.|+|+|+++|.++ .+|.||+|.
T Consensus 18 ~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~-~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSC-RVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSS-CCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred cccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcc-cccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 467899999999999999999999964 47999999999998 77788999999999999999999864 799999987
Q ss_pred cc
Q 039337 919 SE 920 (1344)
Q Consensus 919 ~d 920 (1344)
.+
T Consensus 97 ~~ 98 (119)
T 2cqo_A 97 VN 98 (119)
T ss_dssp BC
T ss_pred cc
Confidence 54
No 17
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Probab=99.18 E-value=3.4e-10 Score=126.94 Aligned_cols=172 Identities=18% Similarity=0.165 Sum_probs=128.3
Q ss_pred ccCCCcc-cCCHHHHHHHhh--cCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 966 IVHPCFQ-NVTADEAMKLLS--AKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~--~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
-.+|||+ +++-.+||++|. ..+.|+++||+|++.+...+++++. ++-..|+.|.... ++ .|.|. +
T Consensus 4 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~-~~~v~H~~I~~~~--~g----~~~l~-----~ 71 (254)
T 2oq1_A 4 AHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVH-DVRFHHFPIERQL--NG----TYAIA-----G 71 (254)
T ss_dssp TTCTTBCBSCCHHHHHHHHHHTTCCTTCEEEEECSSSTTCEEEEEEE-TTEEEEEEEEECT--TS----CEEET-----T
T ss_pred ccCCccCCCCCHHHHHHHHhccCCCCcEEEEEeCCCCCCCEEEEEEE-CCeEEEEEEEEeC--CC----CEEeC-----C
Confidence 4689999 999999999994 4689999999999988888999997 5667899998732 21 13332 3
Q ss_pred CccccchHHHHHHHHhhhH------------------------------------------------------HHH----
Q 039337 1043 EDTFEDLDEVVDRYIDPLV------------------------------------------------------SHL---- 1064 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~pm~------------------------------------------------------~~v---- 1064 (1344)
+..|.+|.|||..|..... -.+
T Consensus 72 ~~~F~sl~~LV~~y~~~~~~l~~~L~~p~~~~~~~~~~~~~f~~i~~~~l~~~v~~~w~~~~~~~~~~~~~~~p~~~~~~ 151 (254)
T 2oq1_A 72 GKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLI 151 (254)
T ss_dssp SCCBSSHHHHHHHHHHCCTTSSSCCCSBCCCCTTCCCBCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHhCCCCcccccccccCCCCCCCCCcccccchhHHHHHHHHHHHHhhcchhhhhhhccCCccccccc
Confidence 5899999999998864320 001
Q ss_pred --HHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEE--ccccc
Q 039337 1065 --KAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKF--RKRMF 1139 (1344)
Q Consensus 1065 --~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~--~~~~~ 1139 (1344)
..+..++.|.. -+++++|++|.... +|. -.|-+-.+ ..||.|.|++..+..+.|-.|..+++|+++ ....|
T Consensus 152 ~~~~l~~~~Wyhg~isR~~Ae~lL~~~g--~~~-G~FLVR~S-~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F 227 (254)
T 2oq1_A 152 ATTAHERMPWYHSSLTREEAERKLYSGA--QTD-GKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKF 227 (254)
T ss_dssp HHHGGGGSTTBCSSCCHHHHHHHHHSSC--CCT-TEEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTSCEESTTSCCB
T ss_pred cccccCCCcccccCCCHHHHHHHHHhcC--CCC-ceEEEEec-CCCCCEEEEEEECCeEEEEEEEEcCCCCEEECCCceE
Confidence 11223455542 37899999995321 122 24666667 899999999999878888888888888666 37999
Q ss_pred ccHHHHHHHHHhhc
Q 039337 1140 EDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~~ 1153 (1344)
+||.+||+||+++.
T Consensus 228 ~sl~~LV~~y~~~~ 241 (254)
T 2oq1_A 228 DTLWQLVEYLKLKA 241 (254)
T ss_dssp SSHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHhCC
Confidence 99999999999875
No 18
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.03 E-value=4.3e-10 Score=128.09 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=72.1
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeC--CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLE--SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~--~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
..+++|++|.|+|++|++||+||+|+ .+++||||+|+|++. ++.++.+.|++||.|.|+|+++|.++.+|+||+|..
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~-~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRR-RIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCS-SCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcc-cccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 34679999999999999999999998 799999999999998 788999999999999999999999999999999874
No 19
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.01 E-value=2.5e-10 Score=113.13 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=69.2
Q ss_pred CcccccCCeEEEEEEEEEecccEEEEeC-CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEec
Q 039337 840 TEDTLAEGRVVQATVRRVQGQRAICVLE-SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRE 918 (1344)
Q Consensus 840 t~~~l~~G~iV~g~V~~V~~~g~fV~L~-~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~ 918 (1344)
+.++|++|++|.|+|++|++||+||+|+ .+..|++|.+...+.....++.+.|++||.|+|+|++||.++.+|.||+++
T Consensus 15 ~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 15 SAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp CTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCC
T ss_pred cHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEch
Confidence 6778999999999999999999999998 466766666554221112367889999999999999999999999999998
Q ss_pred ccccc
Q 039337 919 SEMRN 923 (1344)
Q Consensus 919 ~dl~~ 923 (1344)
..+..
T Consensus 95 ~~l~~ 99 (119)
T 1wi5_A 95 SEVST 99 (119)
T ss_dssp CCSCC
T ss_pred hhccc
Confidence 77654
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=98.91 E-value=4.5e-10 Score=106.14 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=55.6
Q ss_pred cccccccccccccccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhccCCCHHHHHhccCc---EEEe
Q 039337 651 QVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGF---LRVR 720 (1344)
Q Consensus 651 ~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v~~iG~kvf~n~a~F---lrI~ 720 (1344)
..+||||+|+. ++|+.||||||.+|++||+ +|+|.|++||++|+|||+++|+++..+ +.|.
T Consensus 15 ~~~vdiNtAs~-----~eL~~lpGIG~~~A~~IV~----~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f~v~ 78 (97)
T 3arc_U 15 GEKIDLNNTNI-----AAFIQYRGLYPTLAKLIVK----NAPYESVEDVLNIPGLTERQKQILRENLEHFTVT 78 (97)
T ss_dssp GTSEETTTSCG-----GGGGGSTTCTTHHHHHHHH----HCCCSSGGGGGGCTTCCHHHHHHHHHTGGGEECC
T ss_pred CCceeCCcCCH-----HHHhHCCCCCHHHHHHHHH----cCCCCCHHHHHhccCCCHHHHHHHHHHhceeEec
Confidence 45799999999 8999999999999999999 799999999999999999999999764 5553
No 21
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.86 E-value=7.3e-10 Score=124.34 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=72.5
Q ss_pred cccccCCeEEEEEEEEEecccEEEEeC--CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEec
Q 039337 841 EDTLAEGRVVQATVRRVQGQRAICVLE--SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRE 918 (1344)
Q Consensus 841 ~~~l~~G~iV~g~V~~V~~~g~fV~L~--~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~ 918 (1344)
...+++|++|.|+|++|++||+||+|+ .+++||||+|+++++ ++.++.+.|++||.|.|+|+++|.++.+|.||++.
T Consensus 6 ~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~-~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 6 SKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSK-WVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp SSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCS-SCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcc-cccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 346789999999999999999999997 799999999999998 77889999999999999999999989999999986
Q ss_pred c
Q 039337 919 S 919 (1344)
Q Consensus 919 ~ 919 (1344)
.
T Consensus 85 ~ 85 (266)
T 3cw2_C 85 V 85 (266)
T ss_dssp S
T ss_pred c
Confidence 4
No 22
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1
Probab=98.83 E-value=1.7e-08 Score=124.65 Aligned_cols=171 Identities=26% Similarity=0.366 Sum_probs=128.8
Q ss_pred ccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
-.||||| +++-.+||++|... +.|+++||+|+..+...+++++. ++...|+.|...+ . .|.|. ++
T Consensus 2 ~~~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~-~~~v~H~~I~~~~--~-----~~~l~-----~~ 68 (525)
T 2shp_A 2 KSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDLTLSVRR-NGAVTHIKIQNTG--D-----YYDLY-----GG 68 (525)
T ss_dssp CCSTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEE-TTEEEEEEEECSS--S-----CEEET-----TS
T ss_pred CCCCcccCCCCHHHHHHHHHhCCCCCcEEeeccCCCCCcEEEEEEE-CCEEEEEEEEecC--C-----eEEEC-----CC
Confidence 4689999 99999999999764 67999999999878888999996 5677899996421 1 24332 46
Q ss_pred ccccchHHHHHHHHhhhHHH---------H------HHHhhCcccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCC
Q 039337 1044 DTFEDLDEVVDRYIDPLVSH---------L------KAMLSYRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHP 1107 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~pm~~~---------v------~~i~~h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~P 1107 (1344)
+.|.+|.|||..|.+..... + .+...++-|. .-+++++|++|.... .--.|.+-.|...|
T Consensus 69 ~~F~sl~eLv~~y~~~~~~l~~~~g~~i~L~~Pv~~~dp~~~~w~~g~~~r~~Ae~lL~~~~----~~G~FLVR~S~~~~ 144 (525)
T 2shp_A 69 EKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKG----KHGSFLVRESQSHP 144 (525)
T ss_dssp CEESSHHHHHHHHHTCTTCSBSSSSCBCCCCEECCCCCCTTCTTBCCSCCHHHHHHHHHHTC----CTTEEEEEECSSST
T ss_pred CeECCHHHHHHHHHhCCccccccccccccccccccccccccceeecccCCHHHHHHHHhccC----CCceEEEEecCCCC
Confidence 89999999999998553110 0 0111233443 237899999996421 23567777788999
Q ss_pred cEEEEEEecCC----------CCceeeEEEecCceEEc-ccccccHHHHHHHHHhhc
Q 039337 1108 GTFILTYIRST----------NPHHEYIGLYPKGFKFR-KRMFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1108 G~f~L~~~~~~----------~~~~e~i~v~p~gf~~~-~~~~~~~~~L~~~fK~~~ 1153 (1344)
|.|.|++..+. .+.|-.|.....+|.+. ...|++|.+||++++++.
T Consensus 145 g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~g~~~l~~~~~F~sL~eLV~~y~~~~ 201 (525)
T 2shp_A 145 GDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNP 201 (525)
T ss_dssp TCEEEEEEECC-----CCCCCEEEEEEEEEETTEEESSSSCCBSSHHHHHHHHHHSC
T ss_pred CCEEEEEEECCccccccccccceEEEEEEecCCeEEECCCceeCcHHHHHHhhhccC
Confidence 99999999875 46677788888888887 679999999999999874
No 23
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=98.82 E-value=7.4e-09 Score=117.26 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=65.7
Q ss_pred cccccCCeEEEEEEEEEecccEEE-EeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 841 EDTLAEGRVVQATVRRVQGQRAIC-VLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 841 ~~~l~~G~iV~g~V~~V~~~g~fV-~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
...+++|++|+|+|.++++||+|| .++.+++||||+|++++ .+++||.|+|+|++||.++.+|+||+|+.
T Consensus 147 ~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~---------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~ 217 (285)
T 3go5_A 147 AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA---------EPRLGQVLDARVIGFREVDRTLNLSLKPR 217 (285)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS---------CCCTTCEEEEEEEEEETTTTEEEEECSCC
T ss_pred hhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc---------cCCCCCEEEEEEEEEECCCCeEEEEeChh
Confidence 467889999999999999999999 99999999999999875 37999999999999999899999999975
Q ss_pred c
Q 039337 920 E 920 (1344)
Q Consensus 920 d 920 (1344)
.
T Consensus 218 ~ 218 (285)
T 3go5_A 218 S 218 (285)
T ss_dssp C
T ss_pred h
Confidence 3
No 24
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.80 E-value=1e-08 Score=109.56 Aligned_cols=78 Identities=21% Similarity=0.226 Sum_probs=67.4
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCcccc-----------CcccccCCCCEEEEEEEEEeCCCc-
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDS-----------ELSDKLHEGDILTCKIKSIQKNRY- 910 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~-----------~~~~~~~vGq~V~vkVi~iD~~~~- 910 (1344)
..++|+++.|+|++|++||+||+|+. ++||||+|+++++ +.. ++.+.|++||.|+|+|+++|.++.
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~-~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDD-YVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSS-CEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCC-cceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 46799999999999999999999975 9999999999987 432 577889999999999999998754
Q ss_pred ----EEEEEEeccccc
Q 039337 911 ----QVFLVCRESEMR 922 (1344)
Q Consensus 911 ----~I~LSlk~~dl~ 922 (1344)
+|.||++...|-
T Consensus 156 p~~~~I~lS~k~~~LG 171 (187)
T 1go3_E 156 KRGSKIALTMRQPYLG 171 (187)
T ss_dssp ---CEEEEECCSTTCE
T ss_pred CCccEEEEEEcCCCCC
Confidence 999999875443
No 25
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=98.79 E-value=3.3e-09 Score=104.45 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=55.1
Q ss_pred ccccccccccccccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhccCCCHHHH---HhccCcEEEecCC
Q 039337 652 VGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVF---VNAVGFLRVRRSG 723 (1344)
Q Consensus 652 vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v~~iG~kvf---~n~a~FlrI~~~~ 723 (1344)
..||||+|+. ..|+.+|||||.||++|| +||+|+|.+||++|+|||+++| +.-.+.+.|.+..
T Consensus 53 ~kIniNtA~~-----~eL~~LpGiGp~~A~~II----~~GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv~~p~ 118 (134)
T 1s5l_U 53 EKIDLNNTNI-----AAFIQYRGLYPTLAKLIV----KNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVE 118 (134)
T ss_dssp TSEETTTSCG-----GGGGGSTTCTHHHHHHHH----HTCCCSSGGGGGGCTTCCHHHHHHHHHHHTTEECCCCC
T ss_pred CeeeCcccCH-----HHHHHCCCCCHHHHHHHH----HcCCCCCHHHHHhCCCCCHHHHHHHHHhhcceeecCch
Confidence 3599999999 799999999999999999 6999999999999999999864 4457778886543
No 26
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=98.79 E-value=5.1e-08 Score=108.58 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=123.5
Q ss_pred cCCCcc-cC-----CHHHHHHHhh------cCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccc
Q 039337 967 VHPCFQ-NV-----TADEAMKLLS------AKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVG 1034 (1344)
Q Consensus 967 ~HP~F~-n~-----~~~qAe~~L~------~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~s 1034 (1344)
..|||| +| +-.+||++|. ..+-|.++||+|...+...+|+++..+ -..|+.|...+...
T Consensus 3 ~e~WfhG~i~~~~~sR~~AE~lL~~~~~~~~~~dG~FLVR~S~s~~G~y~LSv~~~~-~v~H~~I~~~~~~g-------- 73 (246)
T 4fbn_A 3 NEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNG-KVQHCRIHSRQDAG-------- 73 (246)
T ss_dssp CCTTBCCCCSCC-CHHHHHHHHHHHHHHHHTCCTTCEEEEECSSSTTCEEEEEEETT-EEEEEEEEEECGGG--------
T ss_pred CCCCcCCccccccCCHHHHHHHHHHhhhccCCCCCEEEEEcCCCCCCCEEEEEEECC-EEEEEEEEEECCCC--------
Confidence 358887 45 5788999996 467899999999887777799998654 55799887654322
Q ss_pred cCceeeeCCccccchHHHHHHHHhh-hH------------HHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEE
Q 039337 1035 IGKTLKIGEDTFEDLDEVVDRYIDP-LV------------SHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGF 1100 (1344)
Q Consensus 1035 LG~~L~i~~~~y~DLDEii~~~V~p-m~------------~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f 1100 (1344)
.++-...++..|.+|.|||.-|-+- +. .......+.+-|.. -+++++|++|. ..|.--.|-.
T Consensus 74 ~~~~~~~~~~~F~sl~~LV~~y~~~~l~~~~~~~~l~~p~p~~~~~~~~~Wyhg~isr~~Ae~lL~----~~~~~G~FLV 149 (246)
T 4fbn_A 74 TPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLM----RVPRDGAFLV 149 (246)
T ss_dssp CCEEEEETTEEESSHHHHHHHHHHSCEECSSCEECCCCBCCCSCGGGGSTTEESSCCHHHHHHHHH----TSCCTTEEEE
T ss_pred ceeEEecCCcccCCHHHHHHhHhhcccccccccccccccccccCCcccCCeeecCccHHHHHHHHh----hCCCCCeEEE
Confidence 1122344568999999999888431 10 00011123333432 37899999994 2332233433
Q ss_pred EeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHHHHHHHHhhcC
Q 039337 1101 GISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1101 ~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~L~~~fK~~~~ 1154 (1344)
=.+ ..||.|.|+++-+.++.|--|.-....|.+.+..|+||.+||++++++.-
T Consensus 150 R~s-~~~g~y~Lsv~~~~~v~H~~I~~~~~~~~~~~~~F~sL~~Lv~~y~~~p~ 202 (246)
T 4fbn_A 150 RKR-NEPNSYAISFRAEGKIKHCRVQQEGQTVMLGNSEFDSLVDLISYYEKHPL 202 (246)
T ss_dssp EEC-SSTTEEEEEEEETTEEEEEEEEEETTEEEETTEEESCHHHHHHHHHHSCS
T ss_pred Eec-CCCCCEEEEEEeCCCeEEEEEEeCCCEEEeCCCccCCHHHHHHHhCcCCC
Confidence 334 67999999999988888888888888889999999999999999998743
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.76 E-value=1.4e-09 Score=136.82 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred ccCccchHHHHHHHHhcCccCccCCCCCC-------CchhhhhhhccCCcccccCCeEEEEEEEEEecccEEEEeCCCeE
Q 039337 799 RENKRETLYLIRRELIHGFQDWRNQYKEP-------SQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLA 871 (1344)
Q Consensus 799 ~~~~~~tL~~I~~EL~~p~~D~R~~~~~p-------~~~e~f~~lTget~~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~ 871 (1344)
.+.+-.|+..|.+|+- .+-|+..+-... ..++...++.. -...+++|++|+|+|++|++||+||+|..|++
T Consensus 575 ig~gGk~I~~I~~~~G-~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~-i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~e 652 (723)
T 3cdi_A 575 IGKGGSVIRALTEETG-TTIEIEDDGTVKIAATDGEKAKHAIRRIEE-ITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKE 652 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeeehhhC-ceEEecCCccEEEecCCHHHHHHHHHHHHH-HhhhhhcCcEEEEEEEEEecceEEEEeCCCce
Confidence 3455677888888874 444444332211 11111111111 13568999999999999999999999999999
Q ss_pred EEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 872 GMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 872 GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
||||+|+++++ ++.++.+.|++||.|+|+|++||. +.+|+||+|..
T Consensus 653 GLvHiSel~~~-~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 653 GLVHISQIADK-RVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp ------------------------------------------------
T ss_pred EEEEHHHcCCc-cccCcccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 99999999998 788999999999999999999998 89999999864
No 28
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.75 E-value=1.6e-08 Score=106.43 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=66.1
Q ss_pred chHH--HHHHHHhcCccCccCCCCCCCchhhhhhhccCCcccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCC
Q 039337 804 ETLY--LIRRELIHGFQDWRNQYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSD 881 (1344)
Q Consensus 804 ~tL~--~I~~EL~~p~~D~R~~~~~p~~~e~f~~lTget~~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd 881 (1344)
.++. +|-+.+..|. |.+..+ ...|.+++ -...+|++++|+|++|++||+||+|+. ++||||+|+|++
T Consensus 49 ~di~~~di~~g~i~~~-d~~~~~-----~~~~~~~~----~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~ 117 (171)
T 1y14_B 49 LDYDNIDIQRGRILPT-DGSAEF-----NVKYRAVV----FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQ 117 (171)
T ss_dssp CCGGGCBCC-------------C-----EEEEEEEE----ECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCT
T ss_pred EEecccccCccEEeCC-CCCEEE-----EEEEEEEE----ccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCC
Confidence 4444 4446777765 554333 12222211 124599999999999999999999998 999999999987
Q ss_pred CccccCcc----------cccCCCCEEEEEEEEEeCCC---cEEEEEEec
Q 039337 882 DWRDSELS----------DKLHEGDILTCKIKSIQKNR---YQVFLVCRE 918 (1344)
Q Consensus 882 ~~~~~~~~----------~~~~vGq~V~vkVi~iD~~~---~~I~LSlk~ 918 (1344)
. +..++. +.+++||.|+|+|+++|.++ .+|. ||++
T Consensus 118 ~-~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~ig-sm~~ 165 (171)
T 1y14_B 118 D-LTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIG-SIKE 165 (171)
T ss_dssp T-CEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEEEE-ECCS
T ss_pred C-ceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCcEEEE-EcCC
Confidence 5 443332 67999999999999999886 4555 6654
No 29
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.74 E-value=1.3e-08 Score=110.14 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=71.0
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeC--------CCeEEEEeceecCCCcccc--CcccccCCCCEEEEEEEEEeCCCcE
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLE--------SGLAGMLMKEDYSDDWRDS--ELSDKLHEGDILTCKIKSIQKNRYQ 911 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~--------~gi~GlIh~s~lsd~~~~~--~~~~~~~vGq~V~vkVi~iD~~~~~ 911 (1344)
..+++|++|.|+|++|+++++||+|. .+.+|+||++++++. +.. ++.+.|++||.|.|+|++++.++.+
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~-~~~~~~~~~~l~~GD~V~akVisi~~~~~~ 155 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRAT-EKDKVEIYKSFRPGDIVLAKVISLGDAQSN 155 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTC-SSCCCCGGGTCCSSSEEEEEEEEEETTTTE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccc-cccccchhhhcCCCCEEEEEEEEEeCCCCe
Confidence 36889999999999999999999974 467999999999987 555 7899999999999999999988889
Q ss_pred EEEEEecccc
Q 039337 912 VFLVCRESEM 921 (1344)
Q Consensus 912 I~LSlk~~dl 921 (1344)
+.||+|..++
T Consensus 156 i~LS~k~~~l 165 (209)
T 2nn6_I 156 YLLTTAENEL 165 (209)
T ss_dssp EEEECCSSSC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 30
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.74 E-value=1.6e-08 Score=109.74 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=62.6
Q ss_pred ccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcc----------cccCCCCEEEEEEEEEeCCCc---
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELS----------DKLHEGDILTCKIKSIQKNRY--- 910 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~----------~~~~vGq~V~vkVi~iD~~~~--- 910 (1344)
.++|++++|+|++|++||+||+|+. ++||||+|+|++. +..++. +.+++||.|+|+|+++|.++.
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~-~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~ 158 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQD-LTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIH 158 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSS-CCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCcc-ceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccE
Confidence 4799999999999999999999988 9999999999875 554443 679999999999999998874
Q ss_pred EEEEEEecc
Q 039337 911 QVFLVCRES 919 (1344)
Q Consensus 911 ~I~LSlk~~ 919 (1344)
+|. ||++.
T Consensus 159 ~Ig-Smk~~ 166 (215)
T 2b8k_G 159 AIG-SIKED 166 (215)
T ss_dssp EEE-ECCST
T ss_pred EEE-EcCCC
Confidence 666 77654
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.69 E-value=1.9e-09 Score=134.91 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccc
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESE 920 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~d 920 (1344)
.++++|++|.|+|++|++||+||+|..|++||||+|+++++ ++.++.+.|++||.|+|+|++||. +.+|.||+|..+
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~-rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~ 709 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNE-RVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVD 709 (726)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcc-cccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecc
Confidence 36789999999999999999999999999999999999998 788999999999999999999998 789999998743
No 32
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.68 E-value=3.8e-08 Score=104.53 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=65.0
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccc----------cCcccccCCCCEEEEEEEEEeCC----
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRD----------SELSDKLHEGDILTCKIKSIQKN---- 908 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~----------~~~~~~~~vGq~V~vkVi~iD~~---- 908 (1344)
...+|+++.|+|++|++||+||+++ .++||+|+++++++++. .++.+.+++||.|+|||++||.+
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 4679999999999999999999997 58999999999998332 24567899999999999999864
Q ss_pred CcEEEEEEecccc
Q 039337 909 RYQVFLVCRESEM 921 (1344)
Q Consensus 909 ~~~I~LSlk~~dl 921 (1344)
..+|.||||+.-|
T Consensus 157 ~~rI~ls~k~~gL 169 (180)
T 4ayb_E 157 LPRIALTMRQPYL 169 (180)
T ss_dssp --CEEEECCSTTC
T ss_pred cCcEEEEcCCCCC
Confidence 4689999987543
No 33
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=98.67 E-value=9.7e-09 Score=93.14 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=59.6
Q ss_pred hhhhhhcccccccccccccccccccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhccCCCHHHHHhccCcEEE
Q 039337 641 IEQVMVDVTNQVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGFLRV 719 (1344)
Q Consensus 641 l~~~~~~~vn~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v~~iG~kvf~n~a~FlrI 719 (1344)
|.....+......||||+|+. ..|+.|+||||++|++|+++| .|.+.+||.+++|||+++++++..||+|
T Consensus 6 ~~~~~~~~~~~~~idiN~a~~-----~~L~~ipGIG~~~A~~Il~~r----~~~s~~eL~~v~Gig~k~~~~i~~~l~~ 75 (75)
T 2duy_A 6 LGKVAPLPQAQTPVSLNEASL-----EELMALPGIGPVLARRIVEGR----PYARVEDLLKVKGIGPATLERLRPYLRP 75 (75)
T ss_dssp -----CCCGGGCSEETTTCCH-----HHHTTSTTCCHHHHHHHHHTC----CCSSGGGGGGSTTCCHHHHHHHGGGEEC
T ss_pred hcccccCCcccCccChhhCCH-----HHHHhCCCCCHHHHHHHHHHc----ccCCHHHHHhCCCCCHHHHHHHHHhccC
Confidence 333444556667899999988 799999999999999999998 8999999999999999999999999975
No 34
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.65 E-value=2.9e-08 Score=105.22 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=66.5
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCC----------CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcE
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLES----------GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQ 911 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~----------gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~ 911 (1344)
-..+ |++|.|+|++|+++++||+|.. +.+|+||+|++++. ++.++.+.|++||.|.|+|++ .+
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~-~~~~~~~~~~~GD~V~akVi~-----~~ 126 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEG-YVKEISEAVGYLDILKARVIG-----DN 126 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSS-CCSSGGGTCCTTCEEEEEEEE-----TT
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcc-hhhCHhhcCCCCCEEEEEEEC-----Ce
Confidence 3467 9999999999999999999987 89999999999998 777899999999999999998 68
Q ss_pred EEEEEecccc
Q 039337 912 VFLVCRESEM 921 (1344)
Q Consensus 912 I~LSlk~~dl 921 (1344)
+.||+|..++
T Consensus 127 i~LS~k~~~l 136 (179)
T 3m7n_A 127 LRLSTKEEEM 136 (179)
T ss_dssp TEEECCSTTC
T ss_pred EEEEEecCCC
Confidence 9999998764
No 35
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.59 E-value=6.2e-08 Score=102.14 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=60.3
Q ss_pred ccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCc------------ccccCCCCEEEEEEEEEeCCCc-
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSEL------------SDKLHEGDILTCKIKSIQKNRY- 910 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~------------~~~~~vGq~V~vkVi~iD~~~~- 910 (1344)
-++|++++|+|++|++||+||+|+ ..+||||+|+|++. +..++ .+.+++||.|+|+|+++|.++.
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~-~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 156 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSE-MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND 156 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTT-EEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCC-cEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCC
Confidence 359999999999999999999996 56799999999765 44333 4479999999999999998755
Q ss_pred --EEEEEEecc
Q 039337 911 --QVFLVCRES 919 (1344)
Q Consensus 911 --~I~LSlk~~ 919 (1344)
+|. ||++.
T Consensus 157 ~~~ig-sm~~~ 166 (172)
T 2c35_B 157 IFAIG-SLMDD 166 (172)
T ss_dssp EEEEE-ECCST
T ss_pred cEEEE-EecCC
Confidence 555 77653
No 36
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.53 E-value=3.9e-09 Score=133.24 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=38.4
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceec----CCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEe
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDY----SDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCR 917 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~l----sd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk 917 (1344)
..+++|++|.|+|++|++||+||+|..|++||||+|+| +++ ++.++.+.|++||.|+|+|++||. +.+|+||+|
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~-rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k 740 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGK-RVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPV 740 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC--------------------CCSSCBCCCCCCCCCS-SCC------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCC-cccCcccccCCCCEEEEEEEEECC-CCCEEEEEe
Confidence 46789999999999999999999999999999999999 888 788999999999999999999998 899999998
Q ss_pred cc
Q 039337 918 ES 919 (1344)
Q Consensus 918 ~~ 919 (1344)
..
T Consensus 741 ~~ 742 (757)
T 1e3p_A 741 IE 742 (757)
T ss_dssp --
T ss_pred cC
Confidence 64
No 37
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.51 E-value=1.4e-07 Score=104.81 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=70.1
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccc---cCcccccCCCCEEEEEEEEEeCCCcEEEEEEec
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRD---SELSDKLHEGDILTCKIKSIQKNRYQVFLVCRE 918 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~---~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~ 918 (1344)
..+++|++|.|+|+.|+++++||+|+.+.+|+||++++++. +. .++.+.|++||.|.|+|++++.+ .++.||++.
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~-~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~r~ 147 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGR-SINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSVKG 147 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTS-CCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEECCS
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCC-ccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEEcc
Confidence 45789999999999999999999999999999999999976 55 67888999999999999999975 699999987
Q ss_pred ccc
Q 039337 919 SEM 921 (1344)
Q Consensus 919 ~dl 921 (1344)
..+
T Consensus 148 ~~l 150 (251)
T 2je6_I 148 KDL 150 (251)
T ss_dssp TTC
T ss_pred ccC
Confidence 654
No 38
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.48 E-value=7.4e-08 Score=101.47 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=62.5
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCc----------ccccCCCCEEEEEEEEEeCCC---
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSEL----------SDKLHEGDILTCKIKSIQKNR--- 909 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~----------~~~~~vGq~V~vkVi~iD~~~--- 909 (1344)
...+|++++|+|++|++||+||+|+ .++||||+|+|++. +..++ .+.+++||.|+|||+++|.++
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~~-~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPPD-MKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCTT-CCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCCc-cccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 3568999999999999999999997 47899999999765 55555 468999999999999999987
Q ss_pred cEEEEEEecc
Q 039337 910 YQVFLVCRES 919 (1344)
Q Consensus 910 ~~I~LSlk~~ 919 (1344)
++|. ||++.
T Consensus 159 ~~Ig-tm~~~ 167 (172)
T 3h0g_G 159 FAIA-TMKED 167 (172)
T ss_dssp EEEE-ECCST
T ss_pred eEEE-EcCCC
Confidence 5666 76653
No 39
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.45 E-value=2.3e-06 Score=107.64 Aligned_cols=171 Identities=17% Similarity=0.137 Sum_probs=119.1
Q ss_pred cCCCcc-cCCHHHHHHHhh--cCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 967 VHPCFQ-NVTADEAMKLLS--AKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 967 ~HP~F~-n~~~~qAe~~L~--~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
.+|||+ +++-.+||++|. ..+-|.++||+|+..+...+++++.. +-..|+-|...+... |. ..++
T Consensus 7 ~~~W~~g~i~r~~ae~~L~~~~~~~G~fLvR~s~~~~g~~~ls~~~~-~~~~h~~i~~~~~g~------~~-----~~~~ 74 (613)
T 2ozo_A 7 HLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHD-VRFHHFPIERQLNGT------YA-----IAGG 74 (613)
T ss_dssp SCTTBCBSCCHHHHHHHHHTTTCCTTEEEEEECTTBTTCEEEEEEET-TEEEEEEEEECTTSC------EE-----ETTS
T ss_pred CCCCcCccCCHHHHHHHHhccCCCCCeEEEEecCCCCCCEEEEEEEC-CeEEEEEEEECCCCc------EE-----ECCC
Confidence 467887 799999999994 45679999999998877789999975 455699887533211 22 2356
Q ss_pred ccccchHHHHHHHHhhh-----------H------------HH-------------------------------HHH---
Q 039337 1044 DTFEDLDEVVDRYIDPL-----------V------------SH-------------------------------LKA--- 1066 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~pm-----------~------------~~-------------------------------v~~--- 1066 (1344)
..|.+|.|||.-|.+.- . .. ++.
T Consensus 75 ~~f~sl~~Lv~~y~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~we~~~~~l~~~~~~~~p~~~~~~~ 154 (613)
T 2ozo_A 75 KAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIA 154 (613)
T ss_dssp CCBSSHHHHHHHHTSCCTTSSSCCCSBCCCCTTCCCBCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHhhCCCCCCccCCccCCCCCCCCCCccchhHHHHHHHHHHHHHHhhcCchHHHHHhhcCCCchhhccc
Confidence 88999999999884211 0 00 000
Q ss_pred ---HhhCcccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEE-c-ccccc
Q 039337 1067 ---MLSYRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKF-R-KRMFE 1140 (1344)
Q Consensus 1067 ---i~~h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~-~-~~~~~ 1140 (1344)
+-.++.|. .-+++++|++|.... + .--.|-+-.+ ..||.|.|++..+..+.|=-|.-+.+|.++ . ...|+
T Consensus 155 ~~~~~~~~wyhg~i~r~~ae~~L~~~~--~-~~G~FLvR~s-~~~~~~~lsv~~~~~v~h~~I~~~~~g~~~~~~~~~F~ 230 (613)
T 2ozo_A 155 TTAHERMPWYHSSLTREEAERKLYSGA--Q-TDGKFLLRPR-KEQGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFD 230 (613)
T ss_dssp TSCTTTSTTBCTTCCHHHHHHHHSSSC--C-CTTCEEEEEC-SSTTEEEEEEEETTEEEEEEEEECTTCCEECTTSCEES
T ss_pred ccccccCCccccCCCHHHHHHHHhhcC--C-CCceEEEEec-CCCCCEEEEEEECCeEEEEEEEECCCCCEEECCCCCcC
Confidence 11222343 237899999994211 1 2234666556 889999999998766777667666777544 4 78999
Q ss_pred cHHHHHHHHHhhc
Q 039337 1141 DIDRLVAYFQRHI 1153 (1344)
Q Consensus 1141 ~~~~L~~~fK~~~ 1153 (1344)
||.+||+|++++-
T Consensus 231 sl~~Lv~~y~~~~ 243 (613)
T 2ozo_A 231 TLWQLVEYLKLKA 243 (613)
T ss_dssp SHHHHHHHHHHCC
T ss_pred CHHHHHHHHhhCC
Confidence 9999999999764
No 40
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.43 E-value=4e-07 Score=100.00 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=69.5
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecccc
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESEM 921 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~dl 921 (1344)
..++|++|.|+|+.|+++++||+|+...+|+||++++++.....+..+.|++||.|.|+|++++.+ .++.||++...+
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~-~~i~LS~r~~~l 131 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-MKVTLTMKDRIC 131 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-CCEEEECCSSSC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCC-CcEEEEEccccC
Confidence 568999999999999999999999988999999999996435567889999999999999999975 689999987644
No 41
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.40 E-value=2.7e-07 Score=101.95 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=68.8
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCC---ccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDD---WRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~---~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
.+++|++|.|+|+.|+++++||+|+.+.+|+||+++++++ .+..++.+.|++||.|.|+|++++.+ .++.||++..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEecc
Confidence 5789999999999999999999999999999999999873 13457888999999999999999965 4899999876
Q ss_pred cc
Q 039337 920 EM 921 (1344)
Q Consensus 920 dl 921 (1344)
.+
T Consensus 142 ~l 143 (235)
T 2z0s_A 142 GL 143 (235)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 42
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=98.35 E-value=3.9e-07 Score=86.97 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=53.9
Q ss_pred cccccccccccccccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhccCCCHHHHHhc
Q 039337 651 QVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNA 713 (1344)
Q Consensus 651 ~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v~~iG~kvf~n~ 713 (1344)
...||||+|+. ..|+.|+|||++.|++|+++|+.+|.|.+.+||..|+|||+++++++
T Consensus 29 ~~~i~iN~a~~-----~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l 86 (98)
T 2edu_A 29 KILDLLNEGSA-----RDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESF 86 (98)
T ss_dssp HHHHHHHHSCH-----HHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHH
T ss_pred ccCeehhhCCH-----HHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHH
Confidence 35699999987 79999999999999999999998999999999999999999998875
No 43
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=98.31 E-value=6.4e-06 Score=104.04 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=122.8
Q ss_pred cccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
+-.+|||+ +++-.+||++|.. .+-|.++||.|+..+...+|+++..+. ..|+-|...+.. .|.| .
T Consensus 10 l~~~~Wy~g~isr~~Ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~-v~h~~i~~~~~g------~~~~-----~ 77 (635)
T 4fl3_A 10 ANHLPFFFGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVAHGRK-AHHYTIERELNG------TYAI-----A 77 (635)
T ss_dssp CTTCTTBCBSCCHHHHHHHHHHTTCCTTEEEEEECTTSSSCEEEEEEETTE-EEEEEEEECTTS------CEES-----T
T ss_pred hhcCCccCCCCCHHHHHHHHhcCCCCCceEEEeecccCCCCEEEEEEeCCE-EEeEEEEEcCCC------CEEe-----C
Confidence 45689988 8999999999977 558999999999877778999998555 569888654321 1333 2
Q ss_pred CCccccchHHHHHHHHhhh------------------------------------------------------HHHHHHH
Q 039337 1042 GEDTFEDLDEVVDRYIDPL------------------------------------------------------VSHLKAM 1067 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~pm------------------------------------------------------~~~v~~i 1067 (1344)
+++.|.+|.|||.-|-+.- ....+.+
T Consensus 78 ~~~~f~sl~~Lv~~y~~~~~~l~~~L~~p~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~i~~~~~~~~~~ 157 (635)
T 4fl3_A 78 GGRTHASPADLCHYHSQESDGLVCLLKKPFNRPQGVQPKTGPFEDLKENLIREYVKQTWNLQGQALEQAIISQKPQLEKL 157 (635)
T ss_dssp TCCCBSSHHHHHHHHTTCCTTSSSCCCEECCCCTTCCCBCSHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHhhCCCCCeeccCCcCCCccCCCCCCCCcchhhhHHHHHHHHHHHhcccchhhhhccCCCchhhhh
Confidence 5678999999998775321 0001111
Q ss_pred ---hhCcc--cccC--CHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEE-c-ccc
Q 039337 1068 ---LSYRK--FRKG--SKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKF-R-KRM 1138 (1344)
Q Consensus 1068 ---~~h~k--f~~g--~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~-~-~~~ 1138 (1344)
..|+. |..| +++++|++|.... ++. -.|-+=-+ ..||.|.|++.-+..+.|=-|..+++|.++ . ++.
T Consensus 158 ~~~~~~~~~~Wy~g~isr~~ae~~L~~~~--~~~-G~FLvR~s-~~~g~y~lsv~~~~~v~h~~i~~~~~g~~~~~~~~~ 233 (635)
T 4fl3_A 158 IATTAHEKMPWFHGKISREESEQIVLIGS--KTN-GKFLIRAR-DNNGSYALCLLHEGKVLHYRIDKDKTGKLSIPEGKK 233 (635)
T ss_dssp HTTSCGGGSTTBCCSCCHHHHHHHHHSSS--CCT-TCEEEEES-SSSSCEEEEEEETTEEEEEEEEECTTSCEESTTCCC
T ss_pred hcccccccCCceeccCCHHHHHHHHHcCC--CCC-ceEEEEec-CCCCCEEEEEEECCEEEEEEEEECCCCCEEeCCCCc
Confidence 12332 3333 7899999995321 222 34555445 789999999999877777777777777655 3 489
Q ss_pred cccHHHHHHHHHhhc
Q 039337 1139 FEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1139 ~~~~~~L~~~fK~~~ 1153 (1344)
|+||.+||.+++++-
T Consensus 234 F~sl~~Lv~~y~~~~ 248 (635)
T 4fl3_A 234 FDTLWQLVEHYSYKA 248 (635)
T ss_dssp BSSHHHHHHHHTTCC
T ss_pred cCCHHHHHHHhhhCC
Confidence 999999999999765
No 44
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Probab=98.29 E-value=1.9e-06 Score=106.47 Aligned_cols=168 Identities=20% Similarity=0.302 Sum_probs=118.3
Q ss_pred CCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCcc
Q 039337 968 HPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDT 1045 (1344)
Q Consensus 968 HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~~ 1045 (1344)
||||| +++-.+||++|... +.|.++||+|...+...+++++.. +-..|+.|.. .++ .|.|. ++..
T Consensus 2 ~~Wyhg~i~r~~Ae~lL~~~~~~G~FLvR~S~~~~g~~~Lsv~~~-~~v~H~~I~~---~~~----~~~~~-----~~~~ 68 (532)
T 2b3o_A 2 VRWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVG-DQVTHIRIQN---SGD----FYDLY-----GGEK 68 (532)
T ss_dssp CTTBCSSCCHHHHHHHHHHHCCTTEEEEEECSSSSSEEEEEEEET-TEEEEEEEEC---SSS----CEEET-----TSCE
T ss_pred CCceeCCCCHHHHHHHHHhcCCCCCEEEecCCCCCCceEEEEEEC-CEEEEEEEEe---cCC----EEEEC-----CCcc
Confidence 78887 78999999999876 789999999987777789999974 5567988863 221 23331 4678
Q ss_pred ccchHHHHHHHHhhh---HH---H---------HHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcE
Q 039337 1046 FEDLDEVVDRYIDPL---VS---H---------LKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGT 1109 (1344)
Q Consensus 1046 y~DLDEii~~~V~pm---~~---~---------v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~ 1109 (1344)
|.+|.|||.-|-+.- .. . ..+...++.|.. -+++++|++|.... +. -.|-.-.+...||.
T Consensus 69 F~sl~~Lv~~y~~~~~~l~~~~g~~~~L~~P~~~~~p~~~~w~~g~i~r~~Ae~lL~~~~---~~-G~FLVR~S~~~~g~ 144 (532)
T 2b3o_A 69 FATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKG---EP-WTFLVRESLSQPGD 144 (532)
T ss_dssp ESCHHHHHHHHHTTCSCBCCSSSCCBCCCEECCCCCGGGCTTBCTTCCHHHHHHHHHHHC---CT-TEEEEEECSSSTTC
T ss_pred cCCHHHHHHHHHhcccccccccCchhhccccccccccccccccccccchHHHHHHHhcCC---CC-ceEEEecCCCCCCc
Confidence 999999999987532 00 0 011123344542 27899999996432 22 35666667789999
Q ss_pred EEEEEecCC---------CCceeeEEEecCceEEc-ccccccHHHHHHHHHhh
Q 039337 1110 FILTYIRST---------NPHHEYIGLYPKGFKFR-KRMFEDIDRLVAYFQRH 1152 (1344)
Q Consensus 1110 f~L~~~~~~---------~~~~e~i~v~p~gf~~~-~~~~~~~~~L~~~fK~~ 1152 (1344)
|.|++.... .+.|=-|.-...+|.+. ...|++|.+||++++++
T Consensus 145 y~Lsv~~~~~~~~~~~~~~v~h~~I~~~~g~~~l~~~~~F~sl~eLV~~y~~~ 197 (532)
T 2b3o_A 145 FVLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKT 197 (532)
T ss_dssp EEEEEEEEEEC----CCEEEEEEEEBCCTTSBBSSSSCCBSSHHHHHHHHHHH
T ss_pred eEEEEEecCccccccCCCceEEEEEEEcCCceeeCCCcccCcHHHHHhhcccc
Confidence 999998653 23343344445567776 67999999999999976
No 45
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}
Probab=98.25 E-value=2.4e-06 Score=106.95 Aligned_cols=168 Identities=21% Similarity=0.344 Sum_probs=117.3
Q ss_pred CCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCccc
Q 039337 969 PCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGEDTF 1046 (1344)
Q Consensus 969 P~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~~y 1046 (1344)
|||| +++-.+||++|... ..|.++||+|...+...+|+++..+ -..|+-|...+ . .|.+ .++..|
T Consensus 3 ~Wy~g~isr~~Ae~lL~~~~~~G~FLvR~S~~~~g~y~LSv~~~~-~v~H~~I~~~~--~-----~~~~-----~~~~~F 69 (595)
T 3ps5_A 3 RWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGD-QVTHIRIQNSG--D-----FYDL-----YGGEKF 69 (595)
T ss_dssp SCCCSSCCHHHHHHHHHHHCCTTCEEEEECSSSTTSEEEEEEETT-EEEEEEEEECS--S-----CEES-----SSSCCB
T ss_pred CccCCCCCHHHHHHHHhhCCCCCEEEEeecCCCCCceEEEEEECC-EEEEEEEEeCC--C-----cEEE-----ecCccc
Confidence 5655 78999999999766 6899999999887777899999855 45688886422 1 1323 256789
Q ss_pred cchHHHHHHHHhh---hHH------------HHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEE
Q 039337 1047 EDLDEVVDRYIDP---LVS------------HLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTF 1110 (1344)
Q Consensus 1047 ~DLDEii~~~V~p---m~~------------~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f 1110 (1344)
.+|.|||.-|-+. +.. ...+..+++-|.. -+++++|++|.... +.. .|-+=-|...||.|
T Consensus 70 ~sl~eLv~~y~~~~~~l~~~~g~~i~L~~P~~~~~p~~~~Wy~g~~~r~eAe~lL~~~~---~~G-~FLVR~S~~~~g~y 145 (595)
T 3ps5_A 70 ATLTELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSERWYHGHMSGGQAETLLQAKG---EPW-TFLVRESLSQPGDF 145 (595)
T ss_dssp SSHHHHHHHHHTTSSCCBCSSCCBCCCCCBCCCCCSCCSTTEEESCCHHHHHHHHHHHC---CTT-EEEEEECSSSTTCE
T ss_pred cchhhhhhhhccCccccccccccccccccccccccccccccccccCCHHHHHHHHhccC---CCc-eEEEEecCCCCCcE
Confidence 9999999988762 000 0012223344432 36899999995422 222 34444477899999
Q ss_pred EEEEecCC---------CCceeeEEEecCceEEcc-cccccHHHHHHHHHhhc
Q 039337 1111 ILTYIRST---------NPHHEYIGLYPKGFKFRK-RMFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1111 ~L~~~~~~---------~~~~e~i~v~p~gf~~~~-~~~~~~~~L~~~fK~~~ 1153 (1344)
.|++.-.. .+.|--|.-...+|++.. ..|+||.+||++++++.
T Consensus 146 ~LSv~~~~~~~~~~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~ 198 (595)
T 3ps5_A 146 VLSVLSDQPKAGPGSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTG 198 (595)
T ss_dssp EEEEEEEEESSSTTSCEEEEEEEEBCGGGCBBSSSSCCBSSHHHHHHHHHHSC
T ss_pred EEEEEECCccccccCCCceEEEEEEEeCCEEEEcCCcCCCCHHHHHHHHhcCC
Confidence 99998764 355555655566788875 78999999999999753
No 46
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=98.17 E-value=1.5e-06 Score=91.29 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=46.6
Q ss_pred ccccccccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhh-ccC-------CCHHHHHhc
Q 039337 658 LAIHREWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVT-AHG-------LGKKVFVNA 713 (1344)
Q Consensus 658 ~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~-v~~-------iG~kvf~n~ 713 (1344)
+|+. +.|+.||||||.+|++||+||++ |+|+|.+||.+ |+| ||+++|+..
T Consensus 128 TA~~-----~eL~~LpGIG~k~A~~IIeyRe~-G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~l 185 (205)
T 2i5h_A 128 TTRM-----HQLELLPGVGKKMMWAIIEERKK-RPFESFEDIAQRVKGIQRPEKLIVSRIIYEI 185 (205)
T ss_dssp CSSS-----BGGGGSTTCCHHHHHHHHHHHHH-SCCCSHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cCCH-----HHHhcCCCcCHHHHHHHHHHHhc-CCCCCHHHHHHhcCCCCcchhHHHHHHHHHh
Confidence 7777 69999999999999999999998 99999999977 999 899999887
No 47
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.00 E-value=8.4e-06 Score=102.58 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=62.7
Q ss_pred cCCe--EEEEEEEEEecccEEEEe-CCCeEEEEeceecCC--Ccccc---------CcccccCCCCEEEEEEEEEeCCCc
Q 039337 845 AEGR--VVQATVRRVQGQRAICVL-ESGLAGMLMKEDYSD--DWRDS---------ELSDKLHEGDILTCKIKSIQKNRY 910 (1344)
Q Consensus 845 ~~G~--iV~g~V~~V~~~g~fV~L-~~gi~GlIh~s~lsd--~~~~~---------~~~~~~~vGq~V~vkVi~iD~~~~ 910 (1344)
++|+ +++|+|++|++||+||.| +.|++|+||+|+|++ +++.. +....|++||.|+|+|++||.++.
T Consensus 557 ~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 (644)
T ss_dssp GTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTT
T ss_pred ccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCC
Confidence 4677 999999999999999999 689999999999984 32322 335679999999999999999999
Q ss_pred EEEEEEe
Q 039337 911 QVFLVCR 917 (1344)
Q Consensus 911 ~I~LSlk 917 (1344)
+|.|++.
T Consensus 637 ~I~~~l~ 643 (644)
T 2id0_A 637 SIIARPV 643 (644)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999874
No 48
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=97.97 E-value=2.4e-05 Score=74.71 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=66.0
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
.+-.+|||+ +++-.+|+++|...+.|+++||+|+..+...+++++..+ -..|+.|..... . .|.| +
T Consensus 5 ~l~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~~-~v~H~~I~~~~~-g-----~~~l------~ 71 (100)
T 1r1p_A 5 DIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRASQSSPGDFSISVRHED-DVQHFKVMRDTK-G-----NYFL------W 71 (100)
T ss_dssp -CTTTTTSCTTCCHHHHHHHHHTSCTTBEEEEECSSSTTCEEEEEECSS-SEEEEECEECTT-C-----CEES------S
T ss_pred EeccCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECC-EEEEEEEEEcCC-C-----CEEE------e
Confidence 366789999 999999999999999999999999887777899999864 567888876432 1 1433 4
Q ss_pred CccccchHHHHHHHHh
Q 039337 1043 EDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~ 1058 (1344)
+..|.+|.|||.-|..
T Consensus 72 ~~~F~sl~~LV~~y~~ 87 (100)
T 1r1p_A 72 TEKFPSLNKLVDYYRT 87 (100)
T ss_dssp SCEESSHHHHHHHHTT
T ss_pred CCEeCCHHHHHHHHHh
Confidence 5799999999998864
No 49
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=97.94 E-value=1.2e-05 Score=82.65 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=75.7
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEc-----CCCcch
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLG-----AVNLSC 534 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG-----~~t~s~ 534 (1344)
||||| |||..-|.+|++|+.|.+..- ...++.+. .+.....+.|.++|++|+|+.|||| |+|.+.
T Consensus 4 riLGi--DpG~~riGvAv~d~~g~~a~p--~~~I~~~~------~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~ 73 (150)
T 1vhx_A 4 RILGL--DLGTKTLGVALSDEMGWTAQG--IETIKINE------AEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGP 73 (150)
T ss_dssp EEEEE--EECSSEEEEEEECTTSSSEEE--EEEEECBG------GGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCH
T ss_pred EEEEE--EccCCEEEEEEEECCCCEEee--EEEEEcCC------cchHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhH
Confidence 79998 999966999999999987652 12332210 1223456889999999999999999 998765
Q ss_pred hhhHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHh
Q 039337 535 TSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRIS 582 (1344)
Q Consensus 535 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a 582 (1344)
....++.|+..+.... +++|++|||..++++.....-
T Consensus 74 --~~~~ar~f~~~L~~~~---------~lpV~~vDEr~Ts~~Ak~~l~ 110 (150)
T 1vhx_A 74 --RGEASQTFAKVLETTY---------NVPVVLWDERLTTMAAEKMLI 110 (150)
T ss_dssp --HHHHHHHHHHHHHHHH---------CSCEEEECCSSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhh---------CCCEEEecCCCCHHHHHHHHH
Confidence 3334567777665431 489999999999999876543
No 50
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=97.94 E-value=1.9e-05 Score=75.46 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=64.1
Q ss_pred cCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 967 VHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 967 ~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
.+|||+ +++-.+||++|.+ .+.|+++||+|+..+..++++++.. +-..|+-|...+. . .|.|. ++
T Consensus 1 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~~~-g-----~~~l~-----~~ 68 (100)
T 1rja_A 1 SEPWFFGCISRSEAVRRLQAEGNATGAFLIRVSEKPSADYVLSVRDT-QAVRHYKIWRRAG-G-----RLHLN-----EA 68 (100)
T ss_dssp CCCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECSSSSSCEEEEECTT-SSCEEEEEEECSS-S-----CEEEE-----TT
T ss_pred CCCcccCCCCHHHHHHHHhccCCCCCEEEEEeCCCCCCCEEEEEEEC-CEEEEEEEEEcCC-C-----cEEEC-----CC
Confidence 378888 8999999999998 7899999999998777889999874 5567988876321 1 13332 46
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|...
T Consensus 69 ~~F~sl~~LV~~y~~~ 84 (100)
T 1rja_A 69 VSFLSLPELVNYHRAQ 84 (100)
T ss_dssp EEESSHHHHHHHHHHC
T ss_pred CccCCHHHHHHHHhhC
Confidence 8999999999988754
No 51
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=97.93 E-value=3.5e-05 Score=73.09 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=64.0
Q ss_pred cCCCcc-cCCHHHHHHHhhcCC-CCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCc
Q 039337 967 VHPCFQ-NVTADEAMKLLSAKE-PGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044 (1344)
Q Consensus 967 ~HP~F~-n~~~~qAe~~L~~~~-~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~ 1044 (1344)
.+|||+ +++-.+||++|.+.+ .|+++||+|...+...+++++.. +-..|+.|..... . .|.| ++.
T Consensus 2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~~~-g-----~~~l------~~~ 68 (96)
T 1jyr_A 2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG-NDVQHFKVLRDGA-G-----KYFL------WVV 68 (96)
T ss_dssp CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEET-TEEEEEECEECTT-S-----CEES------SSC
T ss_pred CcceeccCCCHHHHHHHHhcCCCCcEEEEEecCCCCCCEEEEEEeC-CeEEEEEEEEcCC-C-----CEEE------CCc
Confidence 468888 999999999999987 99999999987777789999985 5667888876421 1 1433 468
Q ss_pred cccchHHHHHHHHhh
Q 039337 1045 TFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~p 1059 (1344)
.|.+|.|||.-|...
T Consensus 69 ~F~sl~~LV~~y~~~ 83 (96)
T 1jyr_A 69 KFNSLNELVDYHRST 83 (96)
T ss_dssp EESSHHHHHHHTTSS
T ss_pred ccCCHHHHHHHHhhC
Confidence 999999999987654
No 52
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.93 E-value=1.6e-05 Score=89.97 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=60.3
Q ss_pred cccCCeEEEEEEEEEe-cccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEecc
Q 039337 843 TLAEGRVVQATVRRVQ-GQRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRES 919 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~-~~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~ 919 (1344)
.+.+|+++.|+|++|+ +|||||+++. +++||||+|++++. .. ..+++||.|.|+ +.+|. +.||.||+|..
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~-~~----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~ 137 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPEL-KE----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQ 137 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSS-GG----GSCCTTCEEEEE-EEECT-TSCEEEEECCH
T ss_pred cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcc-cc----cccCCCCEEEEE-EEECC-CCcEEEEehhh
Confidence 4789999999999999 8999999987 79999999999875 22 346999999755 68998 68999999864
No 53
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=97.88 E-value=5.8e-05 Score=72.58 Aligned_cols=83 Identities=25% Similarity=0.326 Sum_probs=65.9
Q ss_pred ccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEe----CceeeEEEEeecCCCCcCcccccccCce
Q 039337 966 IVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVY----DGVYAHKDIIEGGKDHKDIKSLVGIGKT 1038 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~----d~v~~HidV~E~~K~~~~~~~~~sLG~~ 1038 (1344)
..+|||+ +++-.+||++|.. .+.|+++||+|+..+...+++++.. ++...|+.|...+.. .|.|.
T Consensus 2 ~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g------~~~l~-- 73 (105)
T 1lkk_A 2 EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNG------GFYIS-- 73 (105)
T ss_dssp CCCTTBCTTCCHHHHHHHHTSTTCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTS------CEESS--
T ss_pred CcCceecCCCCHHHHHHHHHhcCCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCC------CEEEC--
Confidence 3578888 8999999999975 5899999999988778889999986 577889999764321 13332
Q ss_pred eeeCCccccchHHHHHHHHhh
Q 039337 1039 LKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1039 L~i~~~~y~DLDEii~~~V~p 1059 (1344)
++..|.+|.|||.-|.+.
T Consensus 74 ---~~~~F~sl~~LI~~y~~~ 91 (105)
T 1lkk_A 74 ---PRITFPGLHELVRHYTNA 91 (105)
T ss_dssp ---TTSCBSSHHHHHHHHHHC
T ss_pred ---CCceeCCHHHHHHHHhhC
Confidence 357999999999988764
No 54
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=97.82 E-value=3.8e-05 Score=88.48 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=59.0
Q ss_pred ccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCc--EEEEEEecc
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRY--QVFLVCRES 919 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~--~I~LSlk~~ 919 (1344)
.++|++|+|+|.++.++++||+|+ +.+|++|.++++ |.+.|++||.|+|.|++++.+.. +|.||.+..
T Consensus 132 ~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~sE~i-------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p 201 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWI-------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVP 201 (344)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGGGSC-------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSH
T ss_pred hcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHHHcC-------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeecc
Confidence 348999999999999999999998 899999999875 45689999999999999997654 677776643
No 55
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=4.1e-05 Score=74.56 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=64.8
Q ss_pred ccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCc
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~ 1044 (1344)
-.+|||+ +++-.+||++|...+.|+++||+|+..+...+++++.. +-..|+.|.... +. .+.+++.
T Consensus 17 ~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~-~g-----------~~~l~~~ 83 (111)
T 2eo3_A 17 DRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSEN-SRVSHYIINSLP-NR-----------RFKIGDQ 83 (111)
T ss_dssp CHHHHEEESCCHHHHHHHHSSCCTTCEEEEECSSSSSCEEEEEEET-TEEEEEEEEEET-TT-----------EEEETTC
T ss_pred CCCCcccCCCCHHHHHHHhcCCCCceEEEEeecCCCCCEEEEEEeC-CeEEEEEEEEcC-CC-----------CEEECCc
Confidence 3478888 89999999999999999999999998777889999974 556798887632 11 2345578
Q ss_pred cccchHHHHHHHHh
Q 039337 1045 TFEDLDEVVDRYID 1058 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~ 1058 (1344)
.|.+|.|||.-|.+
T Consensus 84 ~F~sl~~LV~~y~~ 97 (111)
T 2eo3_A 84 EFDHLPALLEFYKI 97 (111)
T ss_dssp CBSSHHHHHHHHTT
T ss_pred ccCCHHHHHHHHhh
Confidence 99999999998875
No 56
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=97.81 E-value=4.6e-05 Score=73.06 Aligned_cols=78 Identities=28% Similarity=0.381 Sum_probs=62.1
Q ss_pred cCCCcc-cCCHHHHHHHh-hcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCc
Q 039337 967 VHPCFQ-NVTADEAMKLL-SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044 (1344)
Q Consensus 967 ~HP~F~-n~~~~qAe~~L-~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~ 1044 (1344)
.+|||+ +++-.+||++| +..+.|+++||+|+..+...+++++..+. ..|+-|... +. .+.+++.
T Consensus 4 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~~~-v~H~~I~~~--~g-----------~~~l~~~ 69 (102)
T 2cia_A 4 GSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGK-NKHFKVQLV--DN-----------VYCIGQR 69 (102)
T ss_dssp -CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEECCSSS-CEEEEEEEE--TT-----------EEEETTE
T ss_pred CCccccCCCCHHHHHHHHhhCCCCcEEEEEECCCCCCCEEEEEEeCCe-eEEEEEEec--CC-----------EEEECCc
Confidence 578998 89999999999 56788999999999877788999998654 568888732 12 2344568
Q ss_pred cccchHHHHHHHHh
Q 039337 1045 TFEDLDEVVDRYID 1058 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~ 1058 (1344)
.|.+|.|||.-|.+
T Consensus 70 ~F~sl~~LV~~y~~ 83 (102)
T 2cia_A 70 RFHTMDELVEHYKK 83 (102)
T ss_dssp EESSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhh
Confidence 99999999998865
No 57
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.80 E-value=3.2e-05 Score=83.48 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=54.2
Q ss_pred ccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCcccc------------------CcccccCCCCEEEEEEEEE
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDS------------------ELSDKLHEGDILTCKIKSI 905 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~------------------~~~~~~~vGq~V~vkVi~i 905 (1344)
-.+|+++.|+|++|++||+||+|+ .++|++|++++.++.+.. +....+++||.|++||+++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 458999999999999999999995 789999999998763322 2345699999999999999
Q ss_pred eCC
Q 039337 906 QKN 908 (1344)
Q Consensus 906 D~~ 908 (1344)
+..
T Consensus 158 ~~~ 160 (203)
T 3ayh_B 158 DFV 160 (203)
T ss_dssp EEC
T ss_pred Ecc
Confidence 874
No 58
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=97.80 E-value=4.7e-05 Score=73.97 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=66.7
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEe-----CceeeEEEEeecCCCCcCcccccccC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVY-----DGVYAHKDIIEGGKDHKDIKSLVGIG 1036 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~-----d~v~~HidV~E~~K~~~~~~~~~sLG 1036 (1344)
-+..+|||+ +++-.+||++|... +.|.++||+|++ +...+|+++.. ++...|+.|..... . .|.|.
T Consensus 7 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~-g-----~~~l~ 79 (110)
T 2ekx_A 7 GLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQ-VGMYTVSLFSKAVNDKKGTVKHYHVHTNAE-N-----KLYLA 79 (110)
T ss_dssp CTTTSSSBCCSCCHHHHHHHHHHTCCTTEEEEEECSS-TTCEEEEECCCCSSCSSCCCEEEECEECTT-C-----CEESS
T ss_pred cccCCCeecCCCCHHHHHHHHhccCCCceEEEEecCC-CCCEEEEEEeccccCCCCcEEEEEEEECCC-C-----CEEEC
Confidence 456789998 99999999999988 889999999975 77889999985 46788999876432 1 13332
Q ss_pred ceeeeCCccccchHHHHHHHHhh
Q 039337 1037 KTLKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1037 ~~L~i~~~~y~DLDEii~~~V~p 1059 (1344)
++..|.+|.|||.-|...
T Consensus 80 -----~~~~F~sl~~LV~~y~~~ 97 (110)
T 2ekx_A 80 -----ENYCFDSIPKLIHYHQHN 97 (110)
T ss_dssp -----TTCCCSCHHHHHHHHHHS
T ss_pred -----CCCccCCHHHHHHHHeeC
Confidence 357999999999888653
No 59
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=97.80 E-value=9.3e-05 Score=72.08 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=64.2
Q ss_pred ccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCc
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~ 1044 (1344)
-.+|||+ +++-.+||++|...+.|.++||+|...+...+++++..+ -..|+.|..... . .+.+ .++.
T Consensus 3 ~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~-~v~H~~I~~~~~-g-----~~~~-----~~~~ 70 (112)
T 3k2m_A 3 EKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEG-RVYHYRINTASD-G-----KLYV-----SSES 70 (112)
T ss_dssp GGSTTEEESCCHHHHHHHTTTCCTTEEEEEECSSSTTCEEEEEEETT-EEEEEEEEECTT-S-----CEES-----STTC
T ss_pred ccCcceeeCCCHHHHHHHhccCCCceEEEEeCCCCCCCEEEEEEeCC-cEEEEEEEECCC-C-----cEEE-----CCCC
Confidence 4689998 999999999999999999999999877888899999854 567888865321 1 1222 2467
Q ss_pred cccchHHHHHHHHh
Q 039337 1045 TFEDLDEVVDRYID 1058 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~ 1058 (1344)
.|.+|.|||.-|..
T Consensus 71 ~F~sl~~LV~~y~~ 84 (112)
T 3k2m_A 71 RFNTLAELVHHHST 84 (112)
T ss_dssp CBSSHHHHHHHHHH
T ss_pred eECCHHHHHHHHhh
Confidence 99999999988865
No 60
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=97.79 E-value=7.2e-05 Score=72.56 Aligned_cols=89 Identities=24% Similarity=0.371 Sum_probs=65.7
Q ss_pred CCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcc---cccccC---ceeee
Q 039337 969 PCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIK---SLVGIG---KTLKI 1041 (1344)
Q Consensus 969 P~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~---~~~sLG---~~L~i 1041 (1344)
|||+ +++-.+||++|.+.+.|+++||+|+.-+...+++++..+.+ .|+-|...+... .+. .....| ..+.+
T Consensus 1 ~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v-~H~~I~~~~~~g-~~~~~~~~~~~g~~~~~~~l 78 (109)
T 1ju5_A 1 SWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRV-SHYIINSSGPRP-PVPPSPAQPPPGVSPSRLRI 78 (109)
T ss_dssp CCEETTCCHHHHHHHHTTCCTTEEEEEECSSSTTEEEEEEECSSCE-EEEEEECCSSSS-CCCCCCSSCCTTCCCCCEEE
T ss_pred CccccCCCHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEECCeE-EEEEEEECCCCc-ccccccccccccccccEEEe
Confidence 4565 89999999999998999999999988777889999986554 688887654210 000 001122 25667
Q ss_pred CCccccchHHHHHHHHhh
Q 039337 1042 GEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~p 1059 (1344)
++..|.+|.|||.-|.+.
T Consensus 79 ~~~~F~sl~~LV~~y~~~ 96 (109)
T 1ju5_A 79 GDQEFDSLPALLEFYKIH 96 (109)
T ss_dssp TTEEESSHHHHHHHHHHS
T ss_pred CCcccCCHHHHHHHHhhC
Confidence 889999999999988753
No 61
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=7e-05 Score=73.76 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=68.8
Q ss_pred cccccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCcee
Q 039337 961 FKERLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTL 1039 (1344)
Q Consensus 961 ~~~RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L 1039 (1344)
....+..+|||| +++-.+||++|.+.+.|+++||+|+..+...+|+++.. +-..|+.|... ++ .|.|.
T Consensus 9 ~~~~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~--~g-----~~~l~--- 77 (118)
T 2dlz_A 9 REIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFN-DEVKHIKVVEK--DN-----WIHIT--- 77 (118)
T ss_dssp CCCCGGGSTTEEESCCHHHHHHHHHHSCTTBEEEECCSCSSCCEEEEEECS-SSEEEEEEEEE--TT-----EEEST---
T ss_pred CccccccCCceecCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEEC-CcEEEEEEEEc--CC-----EEEEe---
Confidence 345677899998 99999999999999999999999997777889999975 55678888763 22 24443
Q ss_pred eeCCccccchHHHHHHHHhh
Q 039337 1040 KIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1040 ~i~~~~y~DLDEii~~~V~p 1059 (1344)
++..|.+|.|||.-|...
T Consensus 78 --~~~~F~sl~~LV~~y~~~ 95 (118)
T 2dlz_A 78 --EAKKFDSLLELVEYYQCH 95 (118)
T ss_dssp --TSCCBSSHHHHHHHHTTS
T ss_pred --CCcccCCHHHHHHHHhhC
Confidence 247999999999988753
No 62
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=97.74 E-value=0.00012 Score=69.45 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=64.3
Q ss_pred ccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCc
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~ 1044 (1344)
..+|||+ +++-.+|+++|...+.|+++||+|+..+...+++++.. +-..|+-|...+ + .|.+. ++.
T Consensus 3 ~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~--~-----~~~~~-----~~~ 69 (98)
T 3us4_A 3 SLMPWFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFG-RDVIHYRVLHRD--G-----HLTID-----EAV 69 (98)
T ss_dssp TTCTTBCCSCCHHHHHHHTCSCCTTCEEEEECSSSTTCEEEEEEET-TEEEEEEEEEET--T-----EEESS-----SSS
T ss_pred ccCcccCCCCCHHHHHHHccCCCCcEEEEEeCCCCCCcEEEEEEEC-CceEEEEEEEeC--C-----EEEEC-----CCC
Confidence 4578887 88999999999999999999999987778889999985 556688887532 2 23333 357
Q ss_pred cccchHHHHHHHHhh
Q 039337 1045 TFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~p 1059 (1344)
.|.+|.|||.-|.+.
T Consensus 70 ~F~sl~~Lv~~y~~~ 84 (98)
T 3us4_A 70 FFCNLMDMVEHYSKD 84 (98)
T ss_dssp EESSHHHHHHHHHHC
T ss_pred ccCCHHHHHHHhhhC
Confidence 999999999988654
No 63
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=6e-05 Score=74.38 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=66.2
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
-+-.+|||| +++-.+||++|...+.|+++||+|...+...+++++..+. ..|+.|..... . .|.+. +
T Consensus 12 ~l~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~-v~H~~I~~~~~-g-----~~~l~-----~ 79 (119)
T 2ecd_A 12 SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYEGR-VYHYRINTTAD-G-----KVYVT-----A 79 (119)
T ss_dssp CCCCSSSEEEECCHHHHHHHHHTSCTTBEEEEEESSSTTEEEEEEECSSC-EEEECCCCCSS-S-----CCCCC-----S
T ss_pred ccccCccccCCCCHHHHHHHhcCCCCCeEEEEeCCCCCCCEEEEEEECCe-EEEEEEEEcCC-C-----CEEEc-----C
Confidence 356789998 8999999999999899999999998777888999998654 57888865321 1 13332 4
Q ss_pred CccccchHHHHHHHHhh
Q 039337 1043 EDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~p 1059 (1344)
+..|.+|.|||.-|...
T Consensus 80 ~~~F~sl~~LV~~y~~~ 96 (119)
T 2ecd_A 80 ESRFSTLAELVHHHSTV 96 (119)
T ss_dssp SCCCSSHHHHHHHHHHC
T ss_pred CCcCCCHHHHHHHHhhC
Confidence 67999999999988653
No 64
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=97.73 E-value=7.6e-05 Score=71.72 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=63.5
Q ss_pred ccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
-.+|||+ +++-.+||++|.+. +.|+++||+|+..+...+++++.. +-..|+-|.... ++ .|.|+..--+..
T Consensus 2 ~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~~--~g----~~~l~~~~g~~~ 74 (104)
T 1d4t_A 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYH-GYIYTYRVSQTE--TG----SWSAETAPGVHK 74 (104)
T ss_dssp TTCTTBCCSCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEET-TEEEEEEEEECT--TS----CEEECBCTTSCC
T ss_pred CCCceEccCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCCEEEEEEEC-CeEEEEEEEECC--CC----eEEEeccCCCCC
Confidence 4678888 89999999999754 789999999987677889999985 456788887532 21 133321000015
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|.+.
T Consensus 75 ~~F~sl~~LV~~y~~~ 90 (104)
T 1d4t_A 75 RYFRKIKNLISAFQKP 90 (104)
T ss_dssp CCBSSHHHHHHHHTSS
T ss_pred cccCCHHHHHHHHhhC
Confidence 7999999999988654
No 65
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Probab=97.73 E-value=0.00012 Score=71.34 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=65.0
Q ss_pred cccCCCcc-cCCHHHHHHHhhcC---CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceee
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAK---EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLK 1040 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~---~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~ 1040 (1344)
+..+|||+ +++-.+||++|.+. +.|+++||+|+.-+...+++++. ++-..|+.|..... . .| .
T Consensus 6 l~~~~WyhG~isR~~Ae~lL~~~g~~~~G~FLVR~S~~~~g~y~LSv~~-~~~v~H~~I~~~~~-g-----~~------~ 72 (111)
T 2hdv_A 6 LSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVRQSETRRGECVLTFNF-QGKAKHLRLSLNAA-G-----QC------R 72 (111)
T ss_dssp GGGSTTEEEECCHHHHHHHHHTTGGGGTTEEEEEECSSCTTEEEEEEEE-TTEEEEEEEEECTT-C-----CE------E
T ss_pred cccCCCcCCCCCHHHHHHHHHHcCCCCCCeEEEEecCCCCCCEEEEEEe-CCeEEEEEEEEcCC-C-----CE------E
Confidence 45789998 89999999999986 89999999998777778999987 55667988875321 1 13 3
Q ss_pred eCCccccchHHHHHHHHh
Q 039337 1041 IGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~ 1058 (1344)
+++..|.+|.|||.-|.+
T Consensus 73 l~~~~F~sl~~LV~~y~~ 90 (111)
T 2hdv_A 73 VQHLHFQSIFDMLEHFRV 90 (111)
T ss_dssp ETTEEESSHHHHHHHHTT
T ss_pred eCCceeCCHHHHHHHHhh
Confidence 457899999999998864
No 66
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A
Probab=97.72 E-value=8.8e-05 Score=73.27 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=66.2
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCC-CCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRG-PSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG-~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
+..+|||+ +++-.+|+++|.+.+.|+++||+|+.. +...+++++..+. ..|+-|... +. .|.|. +
T Consensus 8 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~g~y~LSv~~~~~-v~H~~I~~~--~g-----~~~l~-----~ 74 (120)
T 2iug_A 8 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN-NKLIKIFHR--DG-----KYGFS-----D 74 (120)
T ss_dssp HHTCTTBCCSCCHHHHHHHHTTCCTTEEEEEECSSGGGCSEEEEEEETTE-EEEEEEEEE--TT-----EEESS-----S
T ss_pred cccCCccccCCCHHHHHHHhcCCCCcEEEEECCCCCCCCcEEEEEEECCE-EEEEEEEEc--CC-----EEEEC-----C
Confidence 45689998 899999999999999999999999986 6778999998655 469888763 22 24443 3
Q ss_pred CccccchHHHHHHHHhh
Q 039337 1043 EDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~p 1059 (1344)
+..|.+|.|||.-|...
T Consensus 75 ~~~F~sl~~LI~~y~~~ 91 (120)
T 2iug_A 75 PLTFSSVVELINHYRNE 91 (120)
T ss_dssp SCCBSSHHHHHHHHHHS
T ss_pred CCccCCHHHHHHHHHhC
Confidence 57999999999998754
No 67
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=97.71 E-value=9.6e-05 Score=70.81 Aligned_cols=86 Identities=24% Similarity=0.309 Sum_probs=63.1
Q ss_pred cCCCcc-cCCHHHHHHHhhc-CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCCc
Q 039337 967 VHPCFQ-NVTADEAMKLLSA-KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGED 1044 (1344)
Q Consensus 967 ~HP~F~-n~~~~qAe~~L~~-~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~~ 1044 (1344)
.+|||| +++-.+||++|.+ .+.|+++||+|+..+..++++++.. +-..|+.|.... ++ .|.|+..=-....
T Consensus 2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~~--~g----~~~l~~~~g~~~~ 74 (103)
T 1i3z_A 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFK-KLVYSYRIFREK--HG----YYRIETDAHTPRT 74 (103)
T ss_dssp CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECSSSTTCEEEEEECS-SSEEEEEEEECT--TS----CEEECBCTTSCCC
T ss_pred CCccccCCCCHHHHHHHHhhcCCCceEEEEeCCCCCCCEEEEEEEC-CEEEEEEEEECC--CC----eEEEeccCCCCCc
Confidence 578998 9999999999986 5789999999977677889999975 455788887532 21 1333210000257
Q ss_pred cccchHHHHHHHHhh
Q 039337 1045 TFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~p 1059 (1344)
.|.+|.|||.-|.+.
T Consensus 75 ~F~sl~~LV~~y~~~ 89 (103)
T 1i3z_A 75 IFPNLQELVSKYGKP 89 (103)
T ss_dssp EESSSHHHHHHTTSS
T ss_pred ccCCHHHHHHHHhhC
Confidence 999999999988754
No 68
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.70 E-value=4.4e-05 Score=83.05 Aligned_cols=66 Identities=6% Similarity=-0.029 Sum_probs=55.5
Q ss_pred ccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccC-------------cccccCCCCEEEEEEEEEeCCC
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSE-------------LSDKLHEGDILTCKIKSIQKNR 909 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~-------------~~~~~~vGq~V~vkVi~iD~~~ 909 (1344)
-.+|+++.|+|++|++||+||+|+..++|++|++++.++++..+ -...+++||.|++||+++|...
T Consensus 79 p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~ 157 (218)
T 2ckz_B 79 PFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVD 157 (218)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECC
T ss_pred CCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEccc
Confidence 45899999999999999999999767899999999987634322 2345999999999999999764
No 69
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=97.69 E-value=9.9e-05 Score=72.78 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=64.4
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
....+|||+ +++-.+||++|...+.|.++||+|+.-.. .+|+++..+. ..|+.|...+. . .|.|.. .
T Consensus 12 ~~~~~~WyhG~isR~~Ae~lL~~~~~G~FLVR~S~~~~~-y~LSv~~~~~-v~H~~I~~~~~-g-----~~~l~~----~ 79 (119)
T 2cs0_A 12 QDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG-YTLSYKAQSS-CCHFMVKLLDD-G-----TFMIPG----E 79 (119)
T ss_dssp SSSCCSSBCSSCCHHHHHHHHHTSCTTCEEEEECSSSSS-EEEEECCSSS-CEEEEEEECTT-S-----CEECTT----C
T ss_pred cccCCCccccCCCHHHHHHHhcCCCCCEEEEEecCCCCC-EEEEEEECCE-EEEEEEEEcCC-C-----cEEEec----C
Confidence 446789998 99999999999999999999999998666 8999987654 57988876432 1 133210 2
Q ss_pred CccccchHHHHHHHHh
Q 039337 1043 EDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~ 1058 (1344)
...|.+|.|||.-|.+
T Consensus 80 ~~~F~sl~eLV~~y~~ 95 (119)
T 2cs0_A 80 KVAHTSLDALVTFHQQ 95 (119)
T ss_dssp SCCBSSHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHhh
Confidence 5799999999988864
No 70
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*
Probab=97.68 E-value=0.00012 Score=70.39 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=62.9
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
+..+|||| +++-.+|+++|. +.|+++||+|+..+...+++++..+. ..|+-|. ..+. .| .+++
T Consensus 4 l~~~~Wyhg~isR~~Ae~lL~--~~G~FLVR~S~~~~g~~~LSv~~~~~-v~H~~I~--~~~g-----~~------~~~~ 67 (104)
T 1mil_A 4 LRGEPWFHGKLSRREAEALLQ--LNGDFLVRESTTTPGQYVLTGLQSGQ-PKHLLLV--DPEG-----VV------RTKD 67 (104)
T ss_dssp TTTCTTBCSSCCHHHHHTTCC--STTEEEEEECCSSCSSEEEEEEETTE-EEEEEEB--CTTS-----SE------ECSS
T ss_pred cccCCcCCCCCCHHHHHHHhc--cCCcEEEEeCCCCCCCEEEEEEECCE-EEEEEEE--eCCC-----EE------EECC
Confidence 45689998 899999999998 67999999998877888999998654 5788774 2222 13 3567
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|.+.
T Consensus 68 ~~F~sl~~LI~~y~~~ 83 (104)
T 1mil_A 68 HRFESVSHLISYHMDN 83 (104)
T ss_dssp CEESSHHHHHHHHHHH
T ss_pred ceeCCHHHHHHHHhhC
Confidence 8999999999988753
No 71
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}
Probab=97.68 E-value=0.0001 Score=74.92 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=67.2
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
+..+|||| +++-.+||++|.+.+.|+++||.|+..+..++|+++..+ -..|+-|... +. .|.|+.. ..+
T Consensus 21 l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~-~v~H~~I~~~--~g-----~~~l~~~--~~~ 90 (141)
T 2vif_A 21 LAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSFRSHG-KTLHTRIEHS--NG-----RFSFYEQ--PDV 90 (141)
T ss_dssp HHHHTCBCCSCCHHHHHHHTTTSCTTCEEEEECSSTTCSEEEEEEETT-EEEEEEEEEE--TT-----EEEETTC--CSC
T ss_pred hccCCCcccCCCHHHHHHHhcCCCCceEEEEecCCCCCCEEEEEEECC-EEEEEEEEEE--CC-----EEEEeec--CCC
Confidence 45678998 899999999999999999999999998888899999855 5579888764 22 2443311 126
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|.+.
T Consensus 91 ~~F~sl~eLI~~y~~~ 106 (141)
T 2vif_A 91 EGHTSIVDLIEHSIGD 106 (141)
T ss_dssp CCBSSHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHhhC
Confidence 8999999999988754
No 72
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=97.68 E-value=0.00016 Score=69.58 Aligned_cols=82 Identities=29% Similarity=0.421 Sum_probs=64.9
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
+-.+|||+ +++-.+||++|...+.|+++||.|...+...+++++.. +-..|+-|... +. .|.|+ ++
T Consensus 5 L~~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~--~g-----~~~l~-----~~ 71 (106)
T 3eaz_A 5 LSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSSD-GKVEHYRIMYH--AS-----KLSID-----EE 71 (106)
T ss_dssp GGGCTTBCCSCCHHHHHHHTCSCCTTEEEEEECTTSTTCEEEEEEET-TEEEEEECEEE--TT-----EEESS-----SS
T ss_pred cccCCCcCCCCCHHHHHHHhCCCCCCEEEEEECCCCCCcEEEEEEeC-CceEEEEEEec--CC-----EEEEC-----CC
Confidence 45689988 89999999999999999999999987777889999884 55668888642 12 24443 25
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|...
T Consensus 72 ~~F~sl~~Lv~~y~~~ 87 (106)
T 3eaz_A 72 VYFENLMQLVEHYTSD 87 (106)
T ss_dssp SCBSSHHHHHHHHHHC
T ss_pred CccCCHHHHHHHHhhC
Confidence 7999999999888754
No 73
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Probab=97.67 E-value=0.00013 Score=71.08 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=65.0
Q ss_pred ccccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceee
Q 039337 962 KERLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLK 1040 (1344)
Q Consensus 962 ~~RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~ 1040 (1344)
.++...+|||+ +++-.+||++|...+.|.++||+|++ +...+++++.. +-..|+.|...+ ++ +.+.
T Consensus 4 ~~~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~~-~g~y~LSv~~~-~~v~H~~I~~~~--~g-----~~~~---- 70 (112)
T 1h9o_A 4 IPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSK-QGCYACSVVVD-GEVKHCVINKTA--TG-----YGFA---- 70 (112)
T ss_dssp CGGGSGGGTBCCSCCHHHHHHHHTTCCTTEEEEEECSS-TTCEEEEEEET-TEEEEEEEEEET--TE-----EESS----
T ss_pred CccccCCCcccCCCCHHHHHHHhcCCCCceEEEeecCC-CCCEEEEEEEC-CEEEEEEEEEcC--Cc-----eEEe----
Confidence 35567889998 99999999999988999999999954 67789999974 566798887643 21 2111
Q ss_pred eCCccccchHHHHHHHHh
Q 039337 1041 IGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~ 1058 (1344)
-....|.+|.|||.-|.+
T Consensus 71 ~~~~~F~sl~~LV~~y~~ 88 (112)
T 1h9o_A 71 EPYNLYSSLKELVLHYQH 88 (112)
T ss_dssp TTCCCBSSHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHhh
Confidence 124689999999998875
No 74
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.66 E-value=3e-05 Score=99.21 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=52.8
Q ss_pred eEEEEEEEEEecccEEEEeCC-CeEEEEeceecC--CCcccc----------C----cccccCCCCEEEEEEEEEeCC--
Q 039337 848 RVVQATVRRVQGQRAICVLES-GLAGMLMKEDYS--DDWRDS----------E----LSDKLHEGDILTCKIKSIQKN-- 908 (1344)
Q Consensus 848 ~iV~g~V~~V~~~g~fV~L~~-gi~GlIh~s~ls--d~~~~~----------~----~~~~~~vGq~V~vkVi~iD~~-- 908 (1344)
.++.|+|++|++||+||.|.. |++|+||+++++ ++++.. + ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 478999999999999999976 999999999997 543322 2 247899999999999999988
Q ss_pred -CcEEEEEEe
Q 039337 909 -RYQVFLVCR 917 (1344)
Q Consensus 909 -~~~I~LSlk 917 (1344)
+.+|.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 689999986
No 75
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=9e-05 Score=73.11 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=65.0
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
-+...|||| +++-.+||++|.+. +.|+++||+|+..+...+++++..+. ..|+-|..... . .+.+
T Consensus 12 ~l~~~~WyhG~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~y~LSv~~~~~-v~H~~I~~~~~-g-----------~~~l 78 (119)
T 2gsb_A 12 PHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNEN-IQRFKICPTPN-N-----------QFMM 78 (119)
T ss_dssp SGGGCSSBCCSSCHHHHHHHHHHTCCSSEEEEEECSSSTTCEEEEEECSSC-BCCCCEEEETT-T-----------EEEE
T ss_pred ccccCCcccCCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCceEEEEEECCE-EEEEEEEEcCC-C-----------CEEE
Confidence 356789998 99999999999875 77999999999877788999987654 56887765321 1 2345
Q ss_pred CCccccchHHHHHHHHh
Q 039337 1042 GEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~ 1058 (1344)
++..|.+|.|||.-|.+
T Consensus 79 ~~~~F~sl~~LI~~y~~ 95 (119)
T 2gsb_A 79 GGRYYNSIGDIIDHYRK 95 (119)
T ss_dssp SSCCBSCHHHHHHHHTT
T ss_pred CCcccCCHHHHHHHHhh
Confidence 57899999999999875
No 76
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Probab=97.63 E-value=0.00012 Score=74.14 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=65.7
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
-...+|||| +|+-.+||++|.+.+.|.++||+|+..+..++|+++.. +-..|+.|.. .+. .|.|+ +
T Consensus 22 ~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~--~~g-----~~~l~-----~ 88 (138)
T 2crh_A 22 DLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAEFAISIKYN-VEVKHIKIMT--AEG-----LYRIT-----E 88 (138)
T ss_dssp CGGGSSSBCCSCCHHHHHHHTTTSCTTEEEEECCSSTTCCCEEEEEET-TEEEEEECEE--ETT-----EEESS-----T
T ss_pred CCCcCCcccCCCCHHHHHHHhcCCCCCEEEEEECCCCCCCEEEEEEEC-CeEEEEEEEe--CCC-----EEEEC-----C
Confidence 346789998 89999999999999999999999988777889999985 4567888852 222 24443 2
Q ss_pred CccccchHHHHHHHHhh
Q 039337 1043 EDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~p 1059 (1344)
+..|.+|.|||.-|.+.
T Consensus 89 ~~~F~sl~eLV~~y~~~ 105 (138)
T 2crh_A 89 KKAFRGLTELVEFYQQN 105 (138)
T ss_dssp TCCBSSHHHHHHHHTTS
T ss_pred CCccCCHHHHHHHHHhC
Confidence 57999999999888653
No 77
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=97.63 E-value=0.0002 Score=70.42 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=63.9
Q ss_pred cccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
+..+|||+ +++-.+||++|... +.|+++||.|...+...+++++.. +-..|+-|..... . .|. ++
T Consensus 3 L~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~~-g-----~~~------l~ 69 (117)
T 3ov1_A 3 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG-NDVQHFKVLRDGA-G-----KYF------LW 69 (117)
T ss_dssp CCCCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECSSSTTCEEEEEEET-TEEEEEECEECTT-S-----CEE------SS
T ss_pred cccCCcccCCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCCEEEEEecC-CceEEEEEEECCC-C-----eEE------EC
Confidence 45789988 89999999999997 469999999987777889999885 5567888865322 1 133 44
Q ss_pred CccccchHHHHHHHHhh
Q 039337 1043 EDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~p 1059 (1344)
+..|.+|.|||.-|...
T Consensus 70 ~~~F~sl~eLV~~y~~~ 86 (117)
T 3ov1_A 70 VVKFNSLNELVDYHRST 86 (117)
T ss_dssp SCEESSHHHHHHHTTTS
T ss_pred CCCcCCHHHHHHHHhhC
Confidence 57999999999887653
No 78
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.63 E-value=0.00015 Score=71.73 Aligned_cols=84 Identities=24% Similarity=0.278 Sum_probs=64.9
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLK 1040 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~ 1040 (1344)
-+..+|||| +++-.+||++|.+. +.|+++||+|...+...+++++.. +-..|+-|.... +. .|.|
T Consensus 12 ~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~-~g-----~~~l----- 79 (121)
T 2dly_A 12 SLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDE-GVVKHYRIRRLD-EG-----GFFL----- 79 (121)
T ss_dssp GGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSSCEEEEEESS-SCEEEEEEEECS-SS-----CEEE-----
T ss_pred ccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCCceEEEEEEC-CeEEEEEEEEcC-CC-----CEEE-----
Confidence 356789999 99999999999864 789999999977677789999875 556788887632 11 1332
Q ss_pred eCCccccchHHHHHHHHhh
Q 039337 1041 IGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~p 1059 (1344)
.++..|.+|.|||.-|...
T Consensus 80 ~~~~~F~sl~eLV~~y~~~ 98 (121)
T 2dly_A 80 TRRKVFSTLNEFVNYYTTT 98 (121)
T ss_dssp ETTEEESSHHHHHHHHTTC
T ss_pred CCCCccCCHHHHHHHHhhC
Confidence 2468999999999887653
No 79
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=97.60 E-value=0.0003 Score=69.05 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=64.5
Q ss_pred cccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEe-----CceeeEEEEeecCCCCcCcccccccCc
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVY-----DGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~-----d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
+..+|||+ +++-.+|+++|.+. +.|.++||+|+ .+...+|+++.. .+...|+-|.....+++ .|.+
T Consensus 6 l~~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g----~~~~-- 78 (118)
T 3s9k_A 6 LETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSR-TPGTYTVSVFTKAIISENPCIKHYHIKETNDSPK----RYYV-- 78 (118)
T ss_dssp GGGSTTBCTTCCHHHHHHHHHHHCCTTCEEEEECS-STTCEEEEEEECCSCSSSCEEEEEEEEECSCSSC----CEEE--
T ss_pred cccCceecCCCCHHHHHHHHHhcCCCCeEEEEeeC-CCCCEEEEEEecccccCCCceEEEEEeEEECCCC----CEEE--
Confidence 45678987 89999999999875 58999999995 477789999997 37888999953222221 1222
Q ss_pred eeeeCCccccchHHHHHHHHhh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~p 1059 (1344)
.++..|.+|.|||.-|...
T Consensus 79 ---~~~~~F~sl~~LV~~y~~~ 97 (118)
T 3s9k_A 79 ---AEKYVFDSIPLLIQYHQYN 97 (118)
T ss_dssp ---ECSCCCSCHHHHHHHHHHC
T ss_pred ---CCCcccCCHHHHHHHheeC
Confidence 2457999999999988754
No 80
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=97.60 E-value=9.5e-05 Score=72.21 Aligned_cols=85 Identities=25% Similarity=0.260 Sum_probs=66.9
Q ss_pred ccccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEe---CceeeEEEEeecCCCCcCcccccccCc
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVY---DGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~---d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
-+..+|||+ +++-.+||++|.+ .+.|+++||+|+.-+...+++++.. ++-..|+.|...+. . .|.|
T Consensus 8 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~-g-----~~~l-- 79 (114)
T 1blj_A 8 TLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDN-G-----GYYI-- 79 (114)
T ss_dssp CSCCSSSBCCSCCHHHHHHHHSSTTCCTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETT-T-----EEEE--
T ss_pred ccccCCccCCCCCHHHHHHHHhhCCCCCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCC-C-----CEEE--
Confidence 355789998 8999999999986 5899999999987777889999986 56778999876432 1 1322
Q ss_pred eeeeCCccccchHHHHHHHHhh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~p 1059 (1344)
.++..|.+|.|||.-|.+.
T Consensus 80 ---~~~~~F~sl~~LV~~y~~~ 98 (114)
T 1blj_A 80 ---SPRITFPTLQALVQHYSKK 98 (114)
T ss_dssp ---ETTEEESSHHHHHHHHHHC
T ss_pred ---CCCcccCCHHHHHHHhhhC
Confidence 2468999999999988764
No 81
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.59 E-value=5.5e-05 Score=86.15 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=63.2
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccc---------cCcccccCCCCEEEEEEEEEeCCCcEEE
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRD---------SELSDKLHEGDILTCKIKSIQKNRYQVF 913 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~---------~~~~~~~~vGq~V~vkVi~iD~~~~~I~ 913 (1344)
..++|++|.|+|+.|+.+++||+|.+..+|++|+++++..... .+..+.|++||.|.|+|++++. ...+.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~ 170 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVS 170 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEE
Confidence 5689999999999999999999999888999999998753121 1234679999999999999995 56899
Q ss_pred EEEecccc
Q 039337 914 LVCRESEM 921 (1344)
Q Consensus 914 LSlk~~dl 921 (1344)
||++...+
T Consensus 171 LStr~~~L 178 (308)
T 2nn6_H 171 LHTRSLKY 178 (308)
T ss_dssp EECCSSTT
T ss_pred EEecCcCC
Confidence 99986543
No 82
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=97.56 E-value=0.00028 Score=67.80 Aligned_cols=84 Identities=21% Similarity=0.359 Sum_probs=61.7
Q ss_pred cCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 967 VHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 967 ~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
.+|||+ +++-.+||++|.+. +.|+++||+|+..+...+++++.. +-..|+-|........ ..|.|.. +.
T Consensus 4 ~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~-~~v~H~~I~~~~~~g~---~~~~~~~----~~ 75 (105)
T 1nrv_A 4 TQHWFHGRISREESHRIIKQQGLVDGLFLLRDSQSNPKAFVLTLCHH-QKIKNFQILPCEDDGQ---TFFSLDD----GN 75 (105)
T ss_dssp TSTTBCTTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTCEEEEEEET-TEEEEEEEEEC--------CCEESST----TS
T ss_pred cCcccCCCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEeC-CEEEEEEEEEEcCCCC---EEEEEcC----CC
Confidence 468887 89999999999875 789999999987777889999875 5667888875321110 0132321 24
Q ss_pred ccccchHHHHHHHHh
Q 039337 1044 DTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~ 1058 (1344)
..|.+|.|||.-|..
T Consensus 76 ~~F~sl~~LV~~y~~ 90 (105)
T 1nrv_A 76 TKFSDLIQLVDFYQL 90 (105)
T ss_dssp SCBSSHHHHHHHHTT
T ss_pred cccCCHHHHHHHhhh
Confidence 799999999998865
No 83
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=97.56 E-value=0.00026 Score=68.57 Aligned_cols=80 Identities=30% Similarity=0.494 Sum_probs=61.9
Q ss_pred ccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
..+|||+ +++-.+||++|... +.|.++||+|+..+...+++++.. +-..|+-|...+ . .|.+. ++
T Consensus 5 ~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~--~-----~~~~~-----~~ 71 (109)
T 3tkz_A 5 TSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRN-GAVTHIKIQNTG--D-----YYDLY-----GG 71 (109)
T ss_dssp --CCSBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEET-TEEEEEEEEECS--S-----CEESS-----SS
T ss_pred ccCCceecCCCHHHHHHHHhcCCCCCEEEEEecCCCCCCEEEEEEEC-CEEEEEEEEeCC--C-----EEEec-----CC
Confidence 4689998 89999999999875 789999999997778889999984 556788886532 1 23332 46
Q ss_pred ccccchHHHHHHHHh
Q 039337 1044 DTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~ 1058 (1344)
..|.+|.|||.-|.+
T Consensus 72 ~~F~sl~~LV~~y~~ 86 (109)
T 3tkz_A 72 EKFATLAELVQYYME 86 (109)
T ss_dssp CCBSSHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHh
Confidence 789999999988764
No 84
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=97.55 E-value=0.00023 Score=70.12 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=64.3
Q ss_pred cccCCCcc-cCCHHHHHHHhhc-CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSA-KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~-~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
...+|||| +|+-.+||++|.. .+.|.++||+|+..+...+|+++..+ -..|+.|..... . .|.|...=-..
T Consensus 7 ~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~-~v~H~~I~~~~~-g-----~~~l~~~~g~~ 79 (119)
T 2ysx_A 7 GMVPCWNHGNITRSKAEELLSRTGKDGSFLVRASESISRAYALCVLYRN-CVYTYRILPNED-D-----KFTVQASEGVS 79 (119)
T ss_dssp SCCCSSEEESCCHHHHHHHHHHHCCTTEEEEEECSSCTTSEEEEEECSS-CEEEEEEEECTT-S-----CEEECCSCSSS
T ss_pred CCCCccccCCCCHHHHHHHHhhcCCCCEEEEEeCCCCCCCEEEEEEECC-EEEEEEEEEcCC-C-----CEEEeccCCcC
Confidence 35689998 8999999999987 78899999999987778899999854 557888875321 1 13332100000
Q ss_pred CccccchHHHHHHHHhh
Q 039337 1043 EDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~p 1059 (1344)
...|.+|.|||.-|.+.
T Consensus 80 ~~~F~sl~eLV~~y~~~ 96 (119)
T 2ysx_A 80 MRFFTKLDQLIEFYKKE 96 (119)
T ss_dssp CCCBSSHHHHHHHTTSS
T ss_pred CcccCCHHHHHHHHhhC
Confidence 36899999999887653
No 85
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=97.55 E-value=5.8e-05 Score=72.70 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=64.9
Q ss_pred ccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEe----CceeeEEEEeecCCCCcCcccccccCce
Q 039337 966 IVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVY----DGVYAHKDIIEGGKDHKDIKSLVGIGKT 1038 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~----d~v~~HidV~E~~K~~~~~~~~~sLG~~ 1038 (1344)
..+|||+ +++-.+||++|.. .+.|+++||+|+..+...+++++.. ++-..|+.|...+. . .|.|
T Consensus 3 ~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~-g-----~~~l--- 73 (106)
T 1aot_F 3 QAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDN-G-----GYYI--- 73 (106)
T ss_dssp CSSSSCCBSCCHHHHHHHHHTTTCCTTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETT-T-----EEEE---
T ss_pred ccCccCCCCCCHHHHHHHHhhCCCCCcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCC-C-----CEEE---
Confidence 4678888 8999999999976 4789999999998777889999973 56778988875431 1 1322
Q ss_pred eeeCCccccchHHHHHHHHhh
Q 039337 1039 LKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1039 L~i~~~~y~DLDEii~~~V~p 1059 (1344)
.++..|.+|.|||.-|...
T Consensus 74 --~~~~~F~sl~~LV~~y~~~ 92 (106)
T 1aot_F 74 --TTRAQFETLQQLVQHYSER 92 (106)
T ss_dssp --ETTEEESSHHHHHHHHTTC
T ss_pred --CCCCccCCHHHHHHHhccC
Confidence 2468999999999988754
No 86
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=97.52 E-value=0.00025 Score=70.23 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=66.6
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
.-+..+|||+ +++-.+|+++|...+.|+++||+|+..+...+|+++..+. ..|+-|...+ + .|.++
T Consensus 17 ~~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~-v~H~~I~~~~--~-----~~~l~----- 83 (122)
T 2lnw_A 17 IDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAERFAISIKFNDE-VKHIKVVEKD--N-----WIHIT----- 83 (122)
T ss_dssp CCSTTSTTBCCSCCHHHHHHHHHHSCTTBEEEEECCCSSEEEEEEEECSSC-EEEEEEEEET--T-----EEESS-----
T ss_pred CCcccCcCCCcCCCHHHHHHHhcCCCCCeEEEEeCCCCCCcEEEEEEeCCc-EEEEEEEEcC--C-----EEEEC-----
Confidence 3456789998 8999999999999999999999999878888999998654 5688887432 1 13332
Q ss_pred CCccccchHHHHHHHHhh
Q 039337 1042 GEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~p 1059 (1344)
++..|.+|.|||.-|...
T Consensus 84 ~~~~F~sl~eLV~~y~~~ 101 (122)
T 2lnw_A 84 EAKKFDSLLELVEYYQCH 101 (122)
T ss_dssp SSCCBSSHHHHHHHHHHS
T ss_pred CCCeECCHHHHHHHHhhC
Confidence 358999999999988754
No 87
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Probab=97.51 E-value=0.00049 Score=67.45 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=63.5
Q ss_pred cccccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCcee
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTL 1039 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L 1039 (1344)
.-...+|||+ +++-.+||++|.+ ++.|.++||.|+..+...+++++.. +-..|+.|........ . .+.++.
T Consensus 9 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~~~g~-~--~~~~~~-- 82 (117)
T 3pqz_A 9 AIHRTQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLSLCHL-QKVKHYLILPSEEEGR-L--YFSMDD-- 82 (117)
T ss_dssp CGGGGCTTBCCSCCHHHHHHHHHHTTCCTTEEEEEECCC-CCCEEEEEEET-TEEEEEEEEEECCTTC-C--EEESST--
T ss_pred hhcccCccccCCCCHHHHHHHHhcCCCCCCEEEEEecCCCCCcEEEEEEeC-CeeEEEEEEEecCCCC-E--EEEECC--
Confidence 3445788988 8999999999987 5689999999998777889999985 5566888865321110 0 122211
Q ss_pred eeCCccccchHHHHHHHHh
Q 039337 1040 KIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1040 ~i~~~~y~DLDEii~~~V~ 1058 (1344)
+...|.+|.|||.-|.+
T Consensus 83 --~~~~F~sl~~LV~~y~~ 99 (117)
T 3pqz_A 83 --GQTRFTDLLQLVEFHQL 99 (117)
T ss_dssp --TSSCBSSHHHHHHHHHH
T ss_pred --CCcccCCHHHHHHHHhh
Confidence 24799999999998864
No 88
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=97.50 E-value=0.00033 Score=73.37 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=66.8
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCce--ee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKT--LK 1040 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~--L~ 1040 (1344)
.+-.+|||+ +++-.+||++|.+.+.|+++||.|+.....++|+++..+++ .|+-|... ++ .|.|+.. +.
T Consensus 13 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~~~~~LSv~~~~~v-~H~rI~~~---~g----~~~l~~~~~~~ 84 (169)
T 2c9w_A 13 ELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAGP-TNLRIEYQ---DG----KFRLDSIICVK 84 (169)
T ss_dssp HHHHTSCBCTTCCHHHHHHHHTTSCTTCEEEEECCSTTCSEEEEEEETTEE-EEEEEEEE---TT----EEEECTTTTTG
T ss_pred hcccCCccccCCCHHHHHHHcCCCCCcEEEEecCCCCCCeEEEEEEECCee-EEEEEEEe---CC----EEEEccccCcc
Confidence 356789998 99999999999999999999999998888899999987766 59888763 21 2444320 00
Q ss_pred eCCccccchHHHHHHHHhh
Q 039337 1041 IGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~p 1059 (1344)
-....|.+|.|||.-|.+.
T Consensus 85 ~~~~~F~sl~eLI~~y~~~ 103 (169)
T 2c9w_A 85 SKLKQFDSVVHLIDYYVQM 103 (169)
T ss_dssp GGCCCBSCHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHhC
Confidence 0017899999999887654
No 89
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=97.49 E-value=0.00035 Score=69.41 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=63.7
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
-+..+|||| +++-.+||++|.+. +.|+++||+|+ .+...+++++.. +-..|+-|...+ . .|.++
T Consensus 15 ~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~-~~g~y~LSv~~~-~~v~H~~I~~~~--~-----~~~~~----- 80 (124)
T 2eob_A 15 PHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKRE-GTDSYAITFRAR-GKVKHCRINRDG--R-----HFVLG----- 80 (124)
T ss_dssp STTTSTTEESSCCHHHHHHHHHHCCSSSEEEEECCT-TSSCEEEEEEET-TEEEEEEEEESS--S-----CEESS-----
T ss_pred ccCcCCCeecCCCHHHHHHHHhcCCCCCEEEEEecC-CCCCEEEEEEeC-CeEEEEEEEECC--C-----EEEEC-----
Confidence 345689998 89999999999988 57999999999 678889999985 556798887532 1 24443
Q ss_pred CCccccchHHHHHHHHhh
Q 039337 1042 GEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~p 1059 (1344)
+...|.+|.|||.-|.+.
T Consensus 81 ~~~~F~sl~~LV~~y~~~ 98 (124)
T 2eob_A 81 TSAYFESLVELVSYYEKH 98 (124)
T ss_dssp SSCCBSSHHHHHHHHTTS
T ss_pred CCCcCCCHHHHHHHHhhC
Confidence 124599999999988753
No 90
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}
Probab=97.49 E-value=0.00023 Score=70.80 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=66.7
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEe-----CceeeEEEEeecCCCCcCccccccc
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVY-----DGVYAHKDIIEGGKDHKDIKSLVGI 1035 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~-----d~v~~HidV~E~~K~~~~~~~~~sL 1035 (1344)
.-+..+|||+ +++-.+||++|.+. +.|+++||+|++ +...+|++++. ++-..|+-|...+. . .|.|
T Consensus 6 ~~l~~~~WyhG~isR~eAe~lL~~~g~~G~FLVR~Ss~-~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~-g-----~~~l 78 (125)
T 2ge9_A 6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSK-AGKYTVSVFAKSTGDPQGVIRHYVVCSTPQ-S-----QYYL 78 (125)
T ss_dssp CSSCCSSSEETTCCHHHHHHHHHHHTCTTEEEEEECSS-SCCEEEEEEESSSSSTTCEEEEEECEEETT-T-----EEES
T ss_pred cccccCCccccCCCHHHHHHHHhhcCCCceEEEEecCC-CCCEEEEEEeccccCCCCeEEEEEEEEcCC-C-----CEEE
Confidence 3466789998 99999999999987 889999999965 67789999985 47888999876432 1 1334
Q ss_pred CceeeeCCccccchHHHHHHHHhh
Q 039337 1036 GKTLKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1036 G~~L~i~~~~y~DLDEii~~~V~p 1059 (1344)
+ ++..|.+|.|||.-|...
T Consensus 79 ~-----~~~~F~sl~eLV~~y~~~ 97 (125)
T 2ge9_A 79 A-----EKHLFSTIPELINYHQHN 97 (125)
T ss_dssp S-----TTSCBSSHHHHHHHHHCC
T ss_pred C-----CCCcCCCHHHHHHHhhhC
Confidence 3 357999999999887654
No 91
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.47 E-value=6.3e-05 Score=98.15 Aligned_cols=71 Identities=10% Similarity=0.182 Sum_probs=59.9
Q ss_pred CeEEEEEEEEEecccEEEEeCC-CeEEEEeceecC--CCccccC--------------cccccCCCCEEEEEEEEEeCC-
Q 039337 847 GRVVQATVRRVQGQRAICVLES-GLAGMLMKEDYS--DDWRDSE--------------LSDKLHEGDILTCKIKSIQKN- 908 (1344)
Q Consensus 847 G~iV~g~V~~V~~~g~fV~L~~-gi~GlIh~s~ls--d~~~~~~--------------~~~~~~vGq~V~vkVi~iD~~- 908 (1344)
|+++.|+|++|++||+||.|.. |++|+||+++|+ ++++..+ ....|++||.|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 7789999999999999999976 999999999998 5433221 246899999999999999874
Q ss_pred --CcEEEEEEe
Q 039337 909 --RYQVFLVCR 917 (1344)
Q Consensus 909 --~~~I~LSlk 917 (1344)
+.+|.|++|
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 478999986
No 92
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}
Probab=97.47 E-value=0.00028 Score=71.65 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=64.6
Q ss_pred cccCCCcc-cCCHHHHHHHhhc-CCCCcEEEecCCC--CCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceee
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSA-KEPGESIIRPSSR--GPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLK 1040 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~-~~~Gd~viRPSSk--G~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~ 1040 (1344)
+-.+|||| +|+-.+||++|.. .+.|+++||+|+. .+...+|+++..+. ..|+.|....... .|.|+.. .
T Consensus 20 l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~~~g~y~LSv~~~~~-v~H~~I~~~~~g~-----~~~l~~~-~ 92 (141)
T 2eo6_A 20 LLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQPYTLVAFFNKR-VYNIPVRFIEATK-----QYALGKK-K 92 (141)
T ss_dssp TTTCSSEEESCCHHHHHHHHHHHCCTTCBCEEECSTTCSSCSEEEEEEETTE-EEEEEECEETTTT-----EECSSSC-C
T ss_pred cCCCCeEecCCCHHHHHHHhhccCCCceEEEEECCCCCCCCCEEEEEEECCE-EEEEEEEEeCCCC-----EEEEccc-c
Confidence 56789999 8999999999964 6799999999996 56677999998655 4588886432111 2344321 1
Q ss_pred eCCccccchHHHHHHHHhh
Q 039337 1041 IGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~p 1059 (1344)
.+...|.+|.|||.-|.+.
T Consensus 93 ~~~~~F~sl~eLV~~y~~~ 111 (141)
T 2eo6_A 93 NGEEYFGSVVEIVNSHQHN 111 (141)
T ss_dssp TTCCCBSSHHHHHHHHHHS
T ss_pred CCCCccCCHHHHHHHHhhC
Confidence 2257999999999988754
No 93
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A
Probab=97.47 E-value=0.0003 Score=68.75 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=63.3
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
-+..+|||+ +++-.+||++|. +.|+++||+|+..+ ..+++++.. +-..|+-|...+ + .|. ++
T Consensus 12 ~l~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~-~y~LSv~~~-~~v~H~~I~~~~--g-----~~~------~~ 74 (114)
T 1wqu_A 12 PLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWD-GLPRHFIIQSLD--N-----LYR------LE 74 (114)
T ss_dssp CGGGCTTEEESCCHHHHHTTCC--STTEEEEEECSSSC-CEEEEEEET-TEEEEEECEECS--S-----SEE------SS
T ss_pred ccccCCcEeeCCCHHHHHHHhc--cCCeEEEEEcCCCC-CEEEEEEEC-CEEEEEEEEecC--C-----EEE------EC
Confidence 456789999 999999999998 47999999999877 779999985 456798887532 2 243 45
Q ss_pred CccccchHHHHHHHHh
Q 039337 1043 EDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~ 1058 (1344)
+..|.+|.|||.-|..
T Consensus 75 ~~~F~sl~~LV~~y~~ 90 (114)
T 1wqu_A 75 GEGFPSIPLLIDHLLS 90 (114)
T ss_dssp SCCBSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 7899999999999875
No 94
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.45 E-value=7.6e-05 Score=71.44 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=39.3
Q ss_pred ccccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCC
Q 039337 842 DTLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDD 882 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~ 882 (1344)
.+|++|++|+++|+++++||+||.|+.+++||||+|+|++.
T Consensus 57 ~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp CCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 68999999999999999999999998899999999999976
No 95
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=97.45 E-value=0.00042 Score=67.99 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=64.2
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
..+...|||+ +++-.+||++|. +.|+++||+|+..+...+++++.. +-..|+.|... ++ .| .+
T Consensus 12 ~~~~~~~WyhG~isR~eAe~lL~--~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~--~g-----~y------~~ 75 (116)
T 2kk6_A 12 KPLAEQDWYHGAIPRIEAQELLK--KQGDFLVRESHGKPGEYVLSVYSD-GQRRHFIIQYV--DN-----MY------RF 75 (116)
T ss_dssp CCTTTCTTEEESCCHHHHHHTCC--STTCEEEEECTTCTTCEEEEEEET-TEEEEEEEEEE--TT-----EE------ES
T ss_pred cccccCCCccCCCCHHHHHHHhc--cCCcEEEEECCCCCCcEEEEEEEC-CeEEEEEEEec--CC-----EE------EE
Confidence 4456789998 999999999998 579999999998777789999975 56679888742 12 23 34
Q ss_pred CCccccchHHHHHHHHh
Q 039337 1042 GEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~ 1058 (1344)
++..|.+|.|||.-|.+
T Consensus 76 ~~~~F~sl~eLV~~y~~ 92 (116)
T 2kk6_A 76 EGTGFSNIPQLIDHHYT 92 (116)
T ss_dssp SSCEESCHHHHHHHHHH
T ss_pred CCCEeCCHHHHHHHHhh
Confidence 57899999999999876
No 96
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}
Probab=97.44 E-value=0.00026 Score=72.86 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=66.2
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCce--ee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKT--LK 1040 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~--L~ 1040 (1344)
.+-.+|||+ +|+-.+||++|...+.|.++||+|+..+...+|+++..+ -..|+-|.. .++ .|.|+.. +.
T Consensus 30 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~-~v~H~rI~~---~~g----~f~l~~~~~~~ 101 (152)
T 2hmh_A 30 KLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQS-GTKNLRIQX---EGG----SFSLQSDPRST 101 (152)
T ss_dssp HHHHTSSEETTCCHHHHHHHHHTSCTTEEEEEECCSTTCSEEEEEEETT-EEEEEEEEC---GGG----CBEECBCTTCS
T ss_pred hhccCCCcCCCCCHHHHHHHhcCCCCCcEEEEeCCCCCCcEEEEEEcCC-ceEEEEEEe---cCC----EEEEecccccc
Confidence 355689998 999999999999999999999999987788899999855 567888875 221 2444321 11
Q ss_pred eCCccccchHHHHHHHHhh
Q 039337 1041 IGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~p 1059 (1344)
-....|.+|.|||.-|.+.
T Consensus 102 ~~~~~F~SL~eLV~~Y~~~ 120 (152)
T 2hmh_A 102 QPVPRFDXVLKLVHHYMPP 120 (152)
T ss_dssp SCCCCBSSHHHHHHHTCCC
T ss_pred cccCccCCHHHHHHHHhhC
Confidence 1127999999999877654
No 97
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=97.44 E-value=0.00027 Score=69.62 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=67.0
Q ss_pred ccccccCCCcc-cCCHHHHHHHhhc-CCCCcEEEecCCCCCCceEEEEEEe---CceeeEEEEeecCCCCcCcccccccC
Q 039337 962 KERLIVHPCFQ-NVTADEAMKLLSA-KEPGESIIRPSSRGPSYLTLTLKVY---DGVYAHKDIIEGGKDHKDIKSLVGIG 1036 (1344)
Q Consensus 962 ~~RvI~HP~F~-n~~~~qAe~~L~~-~~~Gd~viRPSSkG~d~L~vTwKv~---d~v~~HidV~E~~K~~~~~~~~~sLG 1036 (1344)
..|+-.+|||+ +++-.+||++|.. .+.|+++||+|+..+...+++++.. ++...|+-|.. +++ .|.|.
T Consensus 15 ~r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~---~~g----~~~i~ 87 (118)
T 2el8_A 15 ARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKR---EGP----KYVID 87 (118)
T ss_dssp CCCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCC---BTT----BCCBS
T ss_pred hccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEE---cCC----EEEEe
Confidence 35778899998 8999999999964 4789999999998787889999983 45677988865 121 24432
Q ss_pred ceeeeCCccc--cchHHHHHHHHhh
Q 039337 1037 KTLKIGEDTF--EDLDEVVDRYIDP 1059 (1344)
Q Consensus 1037 ~~L~i~~~~y--~DLDEii~~~V~p 1059 (1344)
.+..| .+|.|||.-|.+.
T Consensus 88 -----~~~~F~~~sL~eLV~~y~~~ 107 (118)
T 2el8_A 88 -----VEQPFSCTSLDAVVNYFVSH 107 (118)
T ss_dssp -----SSSCCCCSSHHHHHHHHHHH
T ss_pred -----CCCeECCCCHHHHHHHHhhC
Confidence 34688 9999999988754
No 98
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.43 E-value=0.00016 Score=71.85 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=66.1
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEe-----CceeeEEEEeecCCCCcCccccccc
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVY-----DGVYAHKDIIEGGKDHKDIKSLVGI 1035 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~-----d~v~~HidV~E~~K~~~~~~~~~sL 1035 (1344)
.-+..+|||| +|+-.+||++|.+. +.|+++||+|++ +...+|+++.. ++-..|+.|...... .|.|
T Consensus 11 ~~l~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~-~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g------~~~l 83 (125)
T 2dm0_A 11 TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRH-LGSYTISVFMGARRSTEAAIKHYQIKKNDSG------QWYV 83 (125)
T ss_dssp CCCTTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEETT-EEEEEEEEECCCSSSSSCCEEEEEEEECTTC------CEES
T ss_pred cccccCCcccCCCCHHHHHHHHhhcCCCCEEEEEecCC-CCCEEEEEEeccccCCCCcEEEEEEEEcCCC------CEEE
Confidence 3466789998 89999999999876 889999999965 77889999985 467889999764321 1333
Q ss_pred CceeeeCCccccchHHHHHHHHhh
Q 039337 1036 GKTLKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1036 G~~L~i~~~~y~DLDEii~~~V~p 1059 (1344)
. ++..|.+|.|||.-|...
T Consensus 84 ~-----~~~~F~sl~eLV~~y~~~ 102 (125)
T 2dm0_A 84 A-----ERHAFQSIPELIWYHQHN 102 (125)
T ss_dssp S-----SSCCCSSHHHHHHHHTTC
T ss_pred C-----CCCccCCHHHHHHHhhhC
Confidence 2 357999999999887653
No 99
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.40 E-value=0.00022 Score=86.32 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=62.4
Q ss_pred cccCCeEEEEEEEEEecc--cEEEEeCCCeEEEEeceecCCCcc--------ccCcccccCCCCEEEEEEEEEeCCCcEE
Q 039337 843 TLAEGRVVQATVRRVQGQ--RAICVLESGLAGMLMKEDYSDDWR--------DSELSDKLHEGDILTCKIKSIQKNRYQV 912 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~--g~fV~L~~gi~GlIh~s~lsd~~~--------~~~~~~~~~vGq~V~vkVi~iD~~~~~I 912 (1344)
...+|.|+.|+|++|.++ +|||+|+.|.+||+|+++++...+ ..+..+.+++||.|.|.|++......-.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 356899999999999999 999999999999999999986521 1245678999999999999988776666
Q ss_pred EEEEe
Q 039337 913 FLVCR 917 (1344)
Q Consensus 913 ~LSlk 917 (1344)
.||..
T Consensus 122 ~lTt~ 126 (517)
T 2bx2_L 122 ALTTF 126 (517)
T ss_dssp EEESS
T ss_pred eEEee
Confidence 66643
No 100
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=97.39 E-value=0.00033 Score=69.90 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=63.0
Q ss_pred ccCCCcc-cCCHHHHHHHhhc-CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 966 IVHPCFQ-NVTADEAMKLLSA-KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~-~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
-.+|||+ +++-.+||++|.+ .+.|.++||+|+..+...+++++.. +-..|+-|.... ++ .|.|+..=-+..
T Consensus 2 ~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~--~g----~~~l~~~~g~~~ 74 (128)
T 1ka6_A 2 DAVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYH-GYIYTYRVSQTE--TG----SWSAETAPGVHK 74 (128)
T ss_dssp CCCSSBCCSCCHHHHHHHHHHHCCTTCEEEEECSSSTTCEEEEEESS-SCEEEEEEEECT--TS----CEEEECSTTSCC
T ss_pred CCCcccCCCCCHHHHHHHHhcCCCCCEEEEeecCCCCCCEEEEEEeC-CEEEEEEEEECC--CC----eEEEeecCCCCC
Confidence 3578988 8999999999975 4789999999987677889999975 456788887532 21 133321000025
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|.+.
T Consensus 75 ~~F~sl~~LV~~y~~~ 90 (128)
T 1ka6_A 75 RYFRKIKNLISAFQKP 90 (128)
T ss_dssp CEESSHHHHHHHTTSS
T ss_pred CccCCHHHHHHHHhhC
Confidence 7999999999988754
No 101
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Probab=97.37 E-value=0.0002 Score=71.84 Aligned_cols=84 Identities=29% Similarity=0.307 Sum_probs=64.8
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeC--------------ceeeEEEEeecCCCCcCc
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYD--------------GVYAHKDIIEGGKDHKDI 1029 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d--------------~v~~HidV~E~~K~~~~~ 1029 (1344)
....|||+ +++-.+||++|.+++.|.++||+|..-+...+|++++.+ +...|+-|...+ ++
T Consensus 17 ~~~~~Wyhg~isR~eAe~lL~~~~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~--~g-- 92 (131)
T 2kno_A 17 DTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGP--KG-- 92 (131)
T ss_dssp CCHHHHBCTTCCHHHHHHHHTTSCTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCS--SC--
T ss_pred cccCCceecCCCHHHHHHHhcCCCCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECC--CC--
Confidence 34557776 899999999999999999999999877788899999975 478899987532 21
Q ss_pred cccccc-CceeeeCCccccchHHHHHHHHh
Q 039337 1030 KSLVGI-GKTLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1030 ~~~~sL-G~~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
|.| | .-.+..|.+|.|||..|..
T Consensus 93 ---~~l~g---~~~~~~F~SL~eLV~~y~~ 116 (131)
T 2kno_A 93 ---VKIKG---CPSEPYFGSLSALVSQHSI 116 (131)
T ss_dssp ---CCEET---CSSCCCCCSHHHHHHTTTT
T ss_pred ---CEEec---CCCCCccCCHHHHHHHHhh
Confidence 222 1 0145689999999988754
No 102
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}
Probab=97.33 E-value=0.0008 Score=66.98 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=64.3
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLK 1040 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~ 1040 (1344)
-...+|||+ +++-.+||++|.+. +.|.++||+|+.-+...+++++.. +-..|+.|...+... .+ .+.
T Consensus 22 ~l~~~~WyhG~isR~eAe~lL~~~g~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~~~G-----~~----~~~ 91 (126)
T 2aug_A 22 IHRSQPWFHHKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVLSMSHG-QKIKHFQIIPVEDDG-----EM----FHT 91 (126)
T ss_dssp CGGGSTTEETTCCHHHHHHHHHTTTCCTTEEEEEECSSSSCCEEEEEEET-TEEEEEEEEEEEETT-----EE----EEE
T ss_pred ccccCCcccCCCCHHHHHHHHhccCCCCCEEEEeecCCCCCCEEEEEEcC-CeEEEEEEEEECCCC-----eE----EEE
Confidence 456778987 89999999999885 689999999987777789999985 456788887532111 01 123
Q ss_pred eC--CccccchHHHHHHHHh
Q 039337 1041 IG--EDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1041 i~--~~~y~DLDEii~~~V~ 1058 (1344)
++ ...|.+|.|||.-|..
T Consensus 92 l~~~~~~F~SL~eLV~~y~~ 111 (126)
T 2aug_A 92 LDDGHTRFTDLIQLVEFYQL 111 (126)
T ss_dssp SSTTSSCBSSHHHHHHHHTT
T ss_pred eCCCCCccCCHHHHHHHHhh
Confidence 33 4799999999998864
No 103
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}
Probab=97.24 E-value=0.00079 Score=68.09 Aligned_cols=86 Identities=21% Similarity=0.245 Sum_probs=64.9
Q ss_pred ccccCCCcc-cC-CHHHHHHHhhc------CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCccccccc
Q 039337 964 RLIVHPCFQ-NV-TADEAMKLLSA------KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGI 1035 (1344)
Q Consensus 964 RvI~HP~F~-n~-~~~qAe~~L~~------~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sL 1035 (1344)
-+..+|||| ++ +-.+||++|.+ .+.|.++||.|+..+...+|+++.. +-..|+.|........
T Consensus 18 ~~~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~~gg~-------- 88 (138)
T 2dx0_A 18 LHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRS-GRVQHCRIRSTMENGV-------- 88 (138)
T ss_dssp TTSCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEET-TEEEEEEEEEEEETTE--------
T ss_pred cccCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEEC-CeEEEEEEEEecCCCc--------
Confidence 356789998 78 78999999996 5899999999997677789999875 5567988875432100
Q ss_pred Cceeee-CCccccchHHHHHHHHhh
Q 039337 1036 GKTLKI-GEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1036 G~~L~i-~~~~y~DLDEii~~~V~p 1059 (1344)
..+.+ ++..|.+|.|||.-|.+.
T Consensus 89 -~~~~l~~~~~F~sl~eLI~~y~~~ 112 (138)
T 2dx0_A 89 -MKYYLTDNLTFNSIYALIQHYREA 112 (138)
T ss_dssp -EEEESSTTSCBSSHHHHHHHTTTS
T ss_pred -eEEEeCCCCcCCCHHHHHHHHhhC
Confidence 01222 468999999999988654
No 104
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.23 E-value=0.00047 Score=79.63 Aligned_cols=69 Identities=13% Similarity=0.271 Sum_probs=59.2
Q ss_pred ccCCeEEEEEEEE----EecccEEEEeCC---CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCC--cEEEE
Q 039337 844 LAEGRVVQATVRR----VQGQRAICVLES---GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNR--YQVFL 914 (1344)
Q Consensus 844 l~~G~iV~g~V~~----V~~~g~fV~L~~---gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~--~~I~L 914 (1344)
-++|++|+|+|.+ +.++++||+|+. +++|++|.+++. |.+.|++||.|+|.|++|+.+. -+|.|
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-------P~E~~~~GDrVkvyV~~V~~~~kgpqI~L 200 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-------PGESYEHGNRLRCYVVGVTRGAREPLITL 200 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-------TTCCCCTTCEEEEEEEEEECCSSSCEEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-------CCccCCCCCEEEEEEEEEecCCCccEEEE
Confidence 3499999999999 999999999986 599999999875 4578999999999999999874 46777
Q ss_pred EEecc
Q 039337 915 VCRES 919 (1344)
Q Consensus 915 Slk~~ 919 (1344)
|....
T Consensus 201 SRT~p 205 (366)
T 1k0r_A 201 SRTHP 205 (366)
T ss_dssp ESSCH
T ss_pred EeCCh
Confidence 76544
No 105
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}
Probab=97.16 E-value=0.00057 Score=71.11 Aligned_cols=86 Identities=24% Similarity=0.231 Sum_probs=64.2
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCce--eee
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKT--LKI 1041 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~--L~i 1041 (1344)
+-.+|||| +|+-.+|+++|.+.+.|+++||.|+......+|+++..+ -..|+-|... ++ .|.|+.. ..-
T Consensus 20 L~~~~WyhG~IsR~eAe~lL~~~~~GtFLVR~S~s~~g~y~LSvr~~~-~v~H~rI~~~---~g----~f~l~~~~~~~~ 91 (164)
T 2bbu_A 20 LQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFFTLSVKTQS-GTKNLRIQCE---GG----SFSLQSDPRSTQ 91 (164)
T ss_dssp HHHTSCCCTTSCHHHHHHHHHHSSTTCCEEEECSTTSCCEEEEECCTT-CCEEEECEEE---TT----EEESSSCCCCCS
T ss_pred hccCCccCCCCCHHHHHHHhcCCCCCCEEEEECCCCCCCEEEEEEECC-ceEEEEEEeC---CC----eEEEecCccccc
Confidence 55689998 899999999999999999999999877778899998754 4568888752 21 2444421 111
Q ss_pred CCccccchHHHHHHHHh
Q 039337 1042 GEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~ 1058 (1344)
....|.+|.|||.-|..
T Consensus 92 ~~~~F~SL~eLV~~Y~~ 108 (164)
T 2bbu_A 92 PVPRFDCVLKLVHHYMP 108 (164)
T ss_dssp SCTTCCHHHHHHHHHSC
T ss_pred CCCccCCHHHHHHHHhh
Confidence 12689999999877653
No 106
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.14 E-value=0.00072 Score=70.95 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=61.9
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEe
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCR 917 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk 917 (1344)
..++|++|.|+|+.+..++++|+|.+ -.+|++|++.+... .+.....|++||.|.|+|..++.+ ..+.|||.
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~--~k~~r~~l~~GDlV~ArV~~~~~~-~~~~Ltc~ 76 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNA--SKKNRPTLQVGDLVYARVCTAEKE-LEAEIECF 76 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTC--CSSSCCCCCTTCEEEEEEEECCTT-SCCEEESS
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCch--hhhhhccCCCCCEEEEEEEEecCC-CceEEEec
Confidence 35689999999999999999999998 79999999988632 345677899999999999999865 57899964
No 107
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*
Probab=97.12 E-value=0.0019 Score=67.86 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=64.7
Q ss_pred cccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEe----CceeeEEEEeecCCCCcCcccccccCc
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVY----DGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~----d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
+-.+|||+ +++-.+|+++|.. .+.|.++||.|.......+|+++.. ++...|+.|....... |.|+
T Consensus 71 l~~~~w~~g~isr~~ae~lL~~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g~------~~~~- 143 (175)
T 4d8k_A 71 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGG------FYIS- 143 (175)
T ss_dssp STTCTTBCSSCCHHHHHHHHHSTTCCTTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSSC------EESS-
T ss_pred ccccceecCcccHHHHHHHHhcCCCCCCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCCC------EEEC-
Confidence 55688888 8999999999976 4699999999977778889999983 4577899987533211 3332
Q ss_pred eeeeCCccccchHHHHHHHHh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
++..|.+|.|||.-|.+
T Consensus 144 ----~~~~F~sl~~LV~~y~~ 160 (175)
T 4d8k_A 144 ----PRITFPGLHELVRHYTN 160 (175)
T ss_dssp ----TTSEESSHHHHHHHHHH
T ss_pred ----CCCccCCHHHHHHHHhh
Confidence 34799999999998865
No 108
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=97.01 E-value=0.0015 Score=68.62 Aligned_cols=87 Identities=22% Similarity=0.329 Sum_probs=64.1
Q ss_pred ccccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCc--eeeEEEEee-cCCCCcCcccccccCc
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDG--VYAHKDIIE-GGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~--v~~HidV~E-~~K~~~~~~~~~sLG~ 1037 (1344)
-+-.+|||| +++-.+||++|.. .+.|.++||.| ..+...+|+++..+. ...|+.|.. ...+++ .+. .
T Consensus 8 ~l~~~~Wyhg~isR~~Ae~lL~~~~~~~G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g-----~~~-~ 80 (174)
T 3qwx_X 8 PFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDG-----TAA-A 80 (174)
T ss_dssp GGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTS-----SSC-C
T ss_pred ccccCCCccCCCCHHHHHHHHhccCCCCCeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCC-----ccc-c
Confidence 456789998 8999999999987 45799999999 557778999998665 267998876 332221 000 1
Q ss_pred eeeeCCccccchHHHHHHHH
Q 039337 1038 TLKIGEDTFEDLDEVVDRYI 1057 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V 1057 (1344)
.+.+++..|.+|.|||..|-
T Consensus 81 ~~~~~~~~F~sl~eLv~~y~ 100 (174)
T 3qwx_X 81 GVKIANQSFPDIPALLNHFK 100 (174)
T ss_dssp CEEETTEEESSHHHHHHHTT
T ss_pred eEEECCeecCcHHHHhhhhh
Confidence 34556789999999987664
No 109
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=96.99 E-value=0.00044 Score=76.02 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=69.7
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCccc---ccccC---
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKS---LVGIG--- 1036 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~---~~sLG--- 1036 (1344)
.+-.+|||| +|+-.+||++|...+.|+++||.|+.....++|+++..+.+ .|+.|...+.... +.. .-.-|
T Consensus 9 ~l~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~~~v-~H~~I~~~~~~~~-~~~~~~~~~~g~~~ 86 (230)
T 2dvj_A 9 SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRV-SHYIINSSGPRPP-VPPSPAQPPPGVSP 86 (230)
T ss_dssp SSSSSSSCCSSCCTTHHHHHHTTSSSSCBEEECCSSCTTSCEEECCCSSSC-CCEECBCCCSCCS-SSSSSSSTTTSCCC
T ss_pred cccCCCcccCCCCHHHHHHHhcCCCCceEEEEeCCCCCCCEEEEEEECCEE-EEEEEEeCCCCcc-cccccccccccccc
Confidence 356789999 89999999999988899999999987777789999886554 6888875442110 000 00111
Q ss_pred ceeeeCCccccchHHHHHHHHhh
Q 039337 1037 KTLKIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1037 ~~L~i~~~~y~DLDEii~~~V~p 1059 (1344)
..+.+++..|.+|.|||.-|...
T Consensus 87 ~~~~~~~~~F~sl~~LV~~y~~~ 109 (230)
T 2dvj_A 87 SRLRIGDQEFDSLPALLEFYKIH 109 (230)
T ss_dssp CCEESSSCEESSHHHHHTTSTTT
T ss_pred eEEEeCCceeCCHHHHHHHHhhC
Confidence 24667789999999999998764
No 110
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=96.98 E-value=0.0017 Score=68.96 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=64.1
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
+-.+|||+ +++-.+||++|...+.|.++||.|+.+.--++|+++..+. ..|+-|...+ . .|.++..- -..
T Consensus 31 l~~~~WYhG~isR~eAE~lL~~~~dGtFLVR~S~~~~~~lsLSvr~~~~-v~H~rI~~~~--g-----~f~l~~~~-~~~ 101 (187)
T 2izv_A 31 INNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYSR-SLHARIEQWN--H-----NFSFDAHD-PCV 101 (187)
T ss_dssp HHHCTTEEEECCHHHHHHHHTTCCTTEEEEEECSSTTCSEEEEEEETTE-EEEEECEEET--T-----EEESCTTC-TTS
T ss_pred cccCCccccCCCHHHHHHHhcCCCCCcEEEEECCCCCceEEEEEeeCCe-EEEEEEEECC--C-----EEEEeccC-CCc
Confidence 45678998 8999999999999999999999999987788999987555 4699887642 2 24433100 001
Q ss_pred ccccchHHHHHHHHhh
Q 039337 1044 DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|.+.
T Consensus 102 ~~F~SL~eLV~hY~~~ 117 (187)
T 2izv_A 102 FHSPDITGLLEHYKDP 117 (187)
T ss_dssp CCBSSHHHHHHHTCCG
T ss_pred cccCCHHHHHHHHHhc
Confidence 3799999999877654
No 111
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.96 E-value=0.0014 Score=71.97 Aligned_cols=69 Identities=13% Similarity=0.282 Sum_probs=60.1
Q ss_pred cCCeEEEEEEEE----EecccEEEEeCC---CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCC--cEEEEE
Q 039337 845 AEGRVVQATVRR----VQGQRAICVLES---GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNR--YQVFLV 915 (1344)
Q Consensus 845 ~~G~iV~g~V~~----V~~~g~fV~L~~---gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~--~~I~LS 915 (1344)
++|++|+|+|.+ +.+..++|+|+. +.+|+|+.+++. |.+.|++||.|+|.|++|+... .+|.||
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi-------p~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-------PGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC-------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC-------CCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 589999999999 888899999987 599999998864 5678999999999999999864 689999
Q ss_pred Eeccc
Q 039337 916 CRESE 920 (1344)
Q Consensus 916 lk~~d 920 (1344)
.+..+
T Consensus 79 Rt~p~ 83 (251)
T 2asb_A 79 RTHPN 83 (251)
T ss_dssp SSCHH
T ss_pred eccHH
Confidence 77654
No 112
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2 subdomain, PEST motif, protein complex, cytokine regulator; HET: PTR; NMR {Mus musculus}
Probab=96.96 E-value=0.0066 Score=63.12 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=72.3
Q ss_pred hhhHHHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcc
Q 039337 1058 DPLVSHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRK 1136 (1344)
Q Consensus 1058 ~pm~~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~ 1136 (1344)
+.++...+.+..++-|.. -+++++|++|.. +|. -.|-+-.+...||.|.|++..+..++|--|.-...+|.+..
T Consensus 11 ~~v~~~~~~L~~~~WyhG~IsR~eAe~lL~~----~~~-GtFLVR~S~s~~g~y~LSvr~~~~v~H~rI~~~~g~f~l~~ 85 (164)
T 2bbu_A 11 QLVVNAVRKLQESGFYWSAVTGGEANLLLSA----EPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQS 85 (164)
T ss_dssp HHHHHHHHHHHHTSCCCTTSCHHHHHHHHHH----SST-TCCEEEECSTTSCCEEEEECCTTCCEEEECEEETTEEESSS
T ss_pred hhhhhhhhhhccCCccCCCCCHHHHHHHhcC----CCC-CCEEEEECCCCCCCEEEEEEECCceEEEEEEeCCCeEEEec
Confidence 444556677888887763 378999999953 332 34666668888999999999887888887887777788875
Q ss_pred --------cccccHHHHHHHHHhhcCC
Q 039337 1137 --------RMFEDIDRLVAYFQRHIDD 1155 (1344)
Q Consensus 1137 --------~~~~~~~~L~~~fK~~~~d 1155 (1344)
..|+||.+||++++++-..
T Consensus 86 ~~~~~~~~~~F~SL~eLV~~Y~~~~~~ 112 (164)
T 2bbu_A 86 DPRSTQPVPRFDCVLKLVHHYMPPPGT 112 (164)
T ss_dssp CCCCCSSCTTCCHHHHHHHHHSCCCSC
T ss_pred CcccccCCCccCCHHHHHHHHhhCCCC
Confidence 6999999999999987665
No 113
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70, tyrosine kinase, transferase; HET: PTR; 1.90A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Probab=96.83 E-value=0.0036 Score=69.81 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=63.6
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceee
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLK 1040 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~ 1040 (1344)
-.-.+|||| +++-.+||++|.+. +.|.++||+|+ .+...+++++. ++-..|+-|...... .|.|.
T Consensus 155 ~l~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~-~~g~~~LSv~~-~~~v~H~~I~~~~~g------~~~~~---- 222 (254)
T 2oq1_A 155 AHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRK-EQGTYALSLIY-GKTVYHYLISQDKAG------KYCIP---- 222 (254)
T ss_dssp GGGGSTTBCSSCCHHHHHHHHHSSCCCTTEEEEEECS-STTEEEEEEEE-TTEEEEEEEEECTTS------CEEST----
T ss_pred ccCCCcccccCCCHHHHHHHHHhcCCCCceEEEEecC-CCCCEEEEEEE-CCeEEEEEEEEcCCC------CEEEC----
Confidence 345689998 89999999999976 89999999994 46778999998 455668888753221 13333
Q ss_pred eCCccccchHHHHHHHHh
Q 039337 1041 IGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1041 i~~~~y~DLDEii~~~V~ 1058 (1344)
++..|.+|.|||.-|.+
T Consensus 223 -~~~~F~sl~~LV~~y~~ 239 (254)
T 2oq1_A 223 -EGTKFDTLWQLVEYLKL 239 (254)
T ss_dssp -TSCCBSSHHHHHHHHHH
T ss_pred -CCceECCHHHHHHHHHh
Confidence 36899999999998864
No 114
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.78 E-value=0.0016 Score=64.33 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=64.9
Q ss_pred HHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEc-cccccc
Q 039337 1065 KAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFR-KRMFED 1141 (1344)
Q Consensus 1065 ~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~-~~~~~~ 1141 (1344)
+.+..++-|.. -+++++|++|.... +| --.|-+-.+...||.|.|++..+..++|--|..+++| |++. ...|+|
T Consensus 11 ~~l~~~~WyhG~isR~eAe~lL~~~~--~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~s 87 (121)
T 2dly_A 11 RSLQAEPWFFGAIKRADAEKQLLYSE--NQ-TGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLTRRKVFST 87 (121)
T ss_dssp GGGGGCSSBCSSCCHHHHHHHHTSSS--CC-TTCEEEEECSSSSSCEEEEEESSSCEEEEEEEECSSSCEEEETTEEESS
T ss_pred cccCcCCccccCCCHHHHHHHHhcCC--CC-CCEEEEEcCCCCCCceEEEEEECCeEEEEEEEEcCCCCEEECCCCccCC
Confidence 44566777753 37999999994321 11 2356676788899999999999877777777775565 7775 689999
Q ss_pred HHHHHHHHHhhcC
Q 039337 1142 IDRLVAYFQRHID 1154 (1344)
Q Consensus 1142 ~~~L~~~fK~~~~ 1154 (1344)
|.+||++++++-.
T Consensus 88 l~eLV~~y~~~~~ 100 (121)
T 2dly_A 88 LNEFVNYYTTTSD 100 (121)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHhhCCC
Confidence 9999999998753
No 115
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.0074 Score=59.29 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=63.5
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccHHHH
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDIDRL 1145 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~~~L 1145 (1344)
...+-|.. -+++++|++|... .+. -.|-+-.+...||.|.|++..+..+.|--|..+++| |.+.+..|+||.+|
T Consensus 14 ~~~~WyhG~isR~~Ae~lL~~~---g~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~L 89 (119)
T 2gsb_A 14 EGKIWFHGKISKQEAYNLLMTV---GQV-CSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDI 89 (119)
T ss_dssp GGCSSBCCSSCHHHHHHHHHHT---CCS-SEEEEEECSSSTTCEEEEEECSSCBCCCCEEEETTTEEEESSCCBSCHHHH
T ss_pred ccCCcccCCCCHHHHHHHHhhc---CCC-CeEEEEeCCCCCCceEEEEEECCEEEEEEEEEcCCCCEEECCcccCCHHHH
Confidence 33444542 3789999999643 232 467777788899999999999878888888877665 77778999999999
Q ss_pred HHHHHhhc
Q 039337 1146 VAYFQRHI 1153 (1344)
Q Consensus 1146 ~~~fK~~~ 1153 (1344)
|++++++.
T Consensus 90 I~~y~~~~ 97 (119)
T 2gsb_A 90 IDHYRKEQ 97 (119)
T ss_dssp HHHHTTSC
T ss_pred HHHHhhCc
Confidence 99999753
No 116
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=96.64 E-value=0.004 Score=59.26 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=64.6
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDIDR 1144 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~~~ 1144 (1344)
+..++-|.. -+++++|++|.. .| --.|-+-.+...||.|.|++..+..+.|--|.-+++| |.+.+..|+||.+
T Consensus 6 l~~~~Wyhg~isR~~Ae~lL~~----~~-~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~ 80 (100)
T 1r1p_A 6 IEFPEWFHEGLSRHQAENLLMG----KD-IGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDTKGNYFLWTEKFPSLNK 80 (100)
T ss_dssp CTTTTTSCTTCCHHHHHHHHHT----SC-TTBEEEEECSSSTTCEEEEEECSSSEEEEECEECTTCCEESSSCEESSHHH
T ss_pred eccCCccccCCCHHHHHHHhcC----CC-CCEEEEEecCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeCCEeCCHHH
Confidence 555666653 378999999953 23 3457777788899999999999877777777776655 7888999999999
Q ss_pred HHHHHHhhc
Q 039337 1145 LVAYFQRHI 1153 (1344)
Q Consensus 1145 L~~~fK~~~ 1153 (1344)
||++++++.
T Consensus 81 LV~~y~~~~ 89 (100)
T 1r1p_A 81 LVDYYRTTS 89 (100)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHhCC
Confidence 999999773
No 117
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain; HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1csy_A* 1csz_A*
Probab=96.63 E-value=0.0055 Score=68.33 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=64.0
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCcee
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTL 1039 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L 1039 (1344)
.-.-.+|||| +++-.+||++|.+. +.|.++||+|+ .+...+++++. ++-..|+-|...... .|.|.
T Consensus 153 ~~~~~~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~-~~g~~~LSv~~-~~~v~H~~I~~~~~g------~~~l~--- 221 (254)
T 1a81_A 153 TAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARD-NNGSYALCLLH-EGKVLHYRIDKDKTG------KLSIP--- 221 (254)
T ss_dssp TSGGGSTTEEEECCHHHHHHHHHSSCCCTTCEEEEECS-SSSCEEEEEEE-TTEEEEEEEEECTTS------CEECT---
T ss_pred cccccCCccccCCCHHHHHHHHHhcCCCCceEEEEecC-CCCCEEEEEEE-CCEEEEEEEEEcCCC------CEEec---
Confidence 3456789998 78999999999875 89999999994 46777999997 455678888753221 13332
Q ss_pred eeCCccccchHHHHHHHHhh
Q 039337 1040 KIGEDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1040 ~i~~~~y~DLDEii~~~V~p 1059 (1344)
++..|.+|.|||.-|.+.
T Consensus 222 --~~~~F~sl~~LV~~y~~~ 239 (254)
T 1a81_A 222 --EGKKFDTLWQLVEHYSYK 239 (254)
T ss_dssp --TSCCBSCHHHHHHHHTTC
T ss_pred --CCcccCCHHHHHHHHHHC
Confidence 468999999999888643
No 118
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=96.63 E-value=0.0046 Score=60.61 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=62.2
Q ss_pred hCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccHHHHH
Q 039337 1069 SYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDIDRLV 1146 (1344)
Q Consensus 1069 ~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~~~L~ 1146 (1344)
.++-|.. -+++++|++|.. .+|. -.|-+-.+...||.|.|++.-+..+.|--|...++| |.+....|+||.+||
T Consensus 5 ~~~WyhG~isR~eAe~lL~~---~~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~eLV 80 (117)
T 3ov1_A 5 PHPWFFGKIPRAKAEEMLSK---QRHD-GAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV 80 (117)
T ss_dssp CCTTBCCSCCHHHHHHHHHT---CCST-TBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHH
T ss_pred cCCcccCCCCHHHHHHHHhC---CCCC-CcEEEEeCCCCCCCEEEEEecCCceEEEEEEECCCCeEEECCCCcCCHHHHH
Confidence 4455543 379999999964 2332 356666788899999999998776777667666655 777899999999999
Q ss_pred HHHHhhcC
Q 039337 1147 AYFQRHID 1154 (1344)
Q Consensus 1147 ~~fK~~~~ 1154 (1344)
++++++.-
T Consensus 81 ~~y~~~~l 88 (117)
T 3ov1_A 81 DYHRSTSV 88 (117)
T ss_dssp HHTTTSCS
T ss_pred HHHhhCCC
Confidence 99998753
No 119
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=96.57 E-value=0.0075 Score=57.22 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=63.3
Q ss_pred eEeEeecCCCCCceEEEEECCCCCE---EEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEc-----CCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEV---VDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLG-----AVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~v---ld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG-----~~t 531 (1344)
|+||+ |+|..-|=+|+-|..|.+ +.+++-. ....+.+.|.+++++++|+.|||| +|+
T Consensus 2 riLgl--D~G~kriGvAvsd~~~~~A~pl~ti~~~-------------~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt 66 (98)
T 1iv0_A 2 RVGAL--DVGEARIGLAVGEEGVPLASGRGYLVRK-------------TLEEDVEALLDFVRREGLGKLVVGLPLRTDLK 66 (98)
T ss_dssp CEEEE--EESSSEEEEEEECSCCSSCCCEEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEEECCCCCCSS
T ss_pred cEEEE--EeCCCEEEEEEEeCCCCeeeeeEEEEcc-------------CcHHHHHHHHHHHHHcCCCEEEEeeccCCCCC
Confidence 68998 888866668899998876 4444310 124577899999999999999999 777
Q ss_pred cchhhhHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCch
Q 039337 532 LSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPR 574 (1344)
Q Consensus 532 ~s~~~l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~ 574 (1344)
.+.+ .+.++.|..++.+. +++|+++||...+
T Consensus 67 ~~~~--~~~~~~f~~~L~~~----------~lpV~~~DERlTT 97 (98)
T 1iv0_A 67 ESAQ--AGKVLPLVEALRAR----------GVEVELWDERFTT 97 (98)
T ss_dssp SCCC--SSTTHHHHHHHHHT----------TCEEEEECCSCCC
T ss_pred cCHH--HHHHHHHHHHHhcC----------CCCEEEECCCCCC
Confidence 5531 23455676666431 4899999998654
No 120
>4fbn_A 1-phosphatidylinositol 4,5-bisphosphate phosphodi gamma-1; SH2 domain, plcgamma specific array, interaction domain, FIB growth factor receptor 1; 2.40A {Homo sapiens} PDB: 4ey0_A* 3gqi_B* 2fci_A* 2pld_A* 2ple_A*
Probab=96.56 E-value=0.0056 Score=67.90 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=60.6
Q ss_pred ccCCCcc-cCCHHHHHHHhhcCC-CCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAKE-PGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~~-~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
..+|||+ +++-.+||++|.... -|+++||.|++ +...+|+++..+. ..|+.|...+ +.+.+++
T Consensus 120 ~~~~Wyhg~isr~~Ae~lL~~~~~~G~FLVR~s~~-~g~y~Lsv~~~~~-v~H~~I~~~~-------------~~~~~~~ 184 (246)
T 4fbn_A 120 ESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNE-PNSYAISFRAEGK-IKHCRVQQEG-------------QTVMLGN 184 (246)
T ss_dssp GGSTTEESSCCHHHHHHHHHTSCCTTEEEEEECSS-TTEEEEEEEETTE-EEEEEEEEET-------------TEEEETT
T ss_pred ccCCeeecCccHHHHHHHHhhCCCCCeEEEEecCC-CCCEEEEEEeCCC-eEEEEEEeCC-------------CEEEeCC
Confidence 4578887 799999999997765 69999999976 5667999987655 5699997532 2345567
Q ss_pred ccccchHHHHHHHH
Q 039337 1044 DTFEDLDEVVDRYI 1057 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V 1057 (1344)
..|.+|.|||.-|-
T Consensus 185 ~~F~sL~~Lv~~y~ 198 (246)
T 4fbn_A 185 SEFDSLVDLISYYE 198 (246)
T ss_dssp EEESCHHHHHHHHH
T ss_pred CccCCHHHHHHHhC
Confidence 88999999998873
No 121
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}
Probab=96.51 E-value=0.0087 Score=58.98 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=59.5
Q ss_pred CCCc-ccCCHHHHHHHhhcCC-CCcEEEecCCCCCCceEEEEEEe--CceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 968 HPCF-QNVTADEAMKLLSAKE-PGESIIRPSSRGPSYLTLTLKVY--DGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 968 HP~F-~n~~~~qAe~~L~~~~-~Gd~viRPSSkG~d~L~vTwKv~--d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
.||| .+++-.|||++|...+ .|.++||||+... ..+|+++-. .+..+|.-|.-.+ ..+.|..
T Consensus 15 epWff~~isR~eAE~lL~~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~~-------------G~y~I~~ 80 (125)
T 3maz_A 15 MPACFYTVSRKEATEMLQKNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSVG-------------QNYTIEL 80 (125)
T ss_dssp CCTTBCCCCHHHHHHHHHHCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEET-------------TEEEECS
T ss_pred CCCCcCCCCHHHHHHHHhccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEeC-------------CEEEEec
Confidence 5665 6999999999997654 7999999998766 568888864 3567999998652 1355553
Q ss_pred ---ccccchHHHHHHHHhh
Q 039337 1044 ---DTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1044 ---~~y~DLDEii~~~V~p 1059 (1344)
..|.+|.|||.-|.+-
T Consensus 81 ~~~~~F~SL~eLV~yY~~~ 99 (125)
T 3maz_A 81 EKPVTLPNLFSVIDYFVKE 99 (125)
T ss_dssp SSCEEESSHHHHHHHHHHH
T ss_pred CCCcCcCCHHHHHHHHHhC
Confidence 3699999999888653
No 122
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal transduction inhibitor, KIT regula phosphotyrosine, signaling protein; HET: PTR; 1.45A {Homo sapiens}
Probab=96.49 E-value=0.0082 Score=60.79 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhHHHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEe
Q 039337 1050 DEVVDRYIDPLVSHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLY 1128 (1344)
Q Consensus 1050 DEii~~~V~pm~~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~ 1128 (1344)
++...+||.++ +.+..++.|.. -+++++|++|.. .| --.|-+-.+...||.|.|++..+..++|--|.-.
T Consensus 8 ~~~~~~~v~~~----~~l~~~~WyhG~isR~eAe~lL~~----~~-~G~FLVR~S~~~~~~~~LSv~~~~~v~H~~I~~~ 78 (141)
T 2vif_A 8 PMDVTSLTEEL----KKLAKQGWYWGPITRWEAEGKLAN----VP-DGSFLVRDSSDDRYLLSLSFRSHGKTLHTRIEHS 78 (141)
T ss_dssp ------HHHHH----HHHHHHTCBCCSCCHHHHHHHTTT----SC-TTCEEEEECSSTTCSEEEEEEETTEEEEEEEEEE
T ss_pred CCchhhhhcch----hhhccCCCcccCCCHHHHHHHhcC----CC-CceEEEEecCCCCCCEEEEEEECCEEEEEEEEEE
Confidence 44556677775 45667777753 379999999943 23 2457777788899999999998877888778888
Q ss_pred cCceEEc----ccccccHHHHHHHHHhhcC
Q 039337 1129 PKGFKFR----KRMFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1129 p~gf~~~----~~~~~~~~~L~~~fK~~~~ 1154 (1344)
..+|.+. ...|+||.+||++++++-.
T Consensus 79 ~g~~~l~~~~~~~~F~sl~eLI~~y~~~~~ 108 (141)
T 2vif_A 79 NGRFSFYEQPDVEGHTSIVDLIEHSIGDSE 108 (141)
T ss_dssp TTEEEETTCCSCCCBSSHHHHHHHHHHHHH
T ss_pred CCEEEEeecCCCCccCCHHHHHHHHhhCCC
Confidence 8889997 7999999999999998763
No 123
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=96.44 E-value=0.0042 Score=70.60 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=63.8
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
..+..+|||| +++-.+|+++|...+.|.++||+|| .+...+|+++..+ -..|+-|...+ ++ +.+ ..
T Consensus 189 ~~l~~~~WyhG~IsR~eAE~lL~~~~~GtFLVR~Ss-~~g~y~LSv~~~~-~V~H~rI~~~~--~g-----~~~----~~ 255 (302)
T 2y3a_B 189 PHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESS-QRGCYACSVVVDG-DTKHCVIYRTA--TG-----FGF----AE 255 (302)
T ss_dssp GGGSSTTTBCCSCCHHHHHHHHTTSCTTBEEBCCCS-STTCEEEEEECSS-SEEEEEEEEET--TE-----EES----BT
T ss_pred ccccCCCccCCCCCHHHHHHHhcCCCCCcEEEEecc-CCCceEEEEEeCC-eeEEEEEEECC--Cc-----eEE----eC
Confidence 4567789999 8999999999998999999999995 4677899999755 55788887643 21 222 11
Q ss_pred CCccccchHHHHHHHHh
Q 039337 1042 GEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~ 1058 (1344)
....|.+|.|||.-|..
T Consensus 256 ~~~~F~SL~eLV~~Y~~ 272 (302)
T 2y3a_B 256 PYNLYGSLKELVLHYQH 272 (302)
T ss_dssp TBCCCSSHHHHHHTTSS
T ss_pred CCCCCCCHHHHHHHHHh
Confidence 24689999999987764
No 124
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=96.40 E-value=0.012 Score=56.16 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=63.7
Q ss_pred Cccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHHHHHH
Q 039337 1070 YRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVAY 1148 (1344)
Q Consensus 1070 h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~L~~~ 1148 (1344)
++-|.. -+++++|++|.+.. |. -.|-+-.+...||.|.|++..+..+.|--|.....+|.+.++.|+||.+||++
T Consensus 5 ~~Wyhg~isR~~Ae~lL~~~~---~~-G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~l~~~~F~sl~~LV~~ 80 (102)
T 2cia_A 5 SEWYYGNVTRHQAECALNERG---VE-GDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEH 80 (102)
T ss_dssp CTTBCCSCCHHHHHHHHHHHC---CT-TEEEEEECSSSTTCEEEEECCSSSCEEEEEEEETTEEEETTEEESSHHHHHHH
T ss_pred CccccCCCCHHHHHHHHhhCC---CC-cEEEEEECCCCCCCEEEEEEeCCeeEEEEEEecCCEEEECCcCcCCHHHHHHH
Confidence 344442 37899999995432 22 46777778889999999999988888888887778899999999999999999
Q ss_pred HHhh
Q 039337 1149 FQRH 1152 (1344)
Q Consensus 1149 fK~~ 1152 (1344)
++++
T Consensus 81 y~~~ 84 (102)
T 2cia_A 81 YKKA 84 (102)
T ss_dssp HHHS
T ss_pred HhhC
Confidence 9975
No 125
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=96.33 E-value=0.0084 Score=70.21 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=65.2
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCC-CCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRG-PSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG-~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
+-.+|||| +++-.+|+++|...+.|.++||.|+.. +...+|+++..+. ..|+-|...+ . .|.|+ +
T Consensus 7 L~~~~WYhG~IsR~eAE~lL~~~~dG~FLVR~S~s~~~g~y~LSvr~~~~-v~H~rI~~~~--g-----~y~l~-----~ 73 (373)
T 3hhm_B 7 LQNAEWYWGDISREEVNEKLRDTADGTFLVRDASTKMHGDYTLTLRKGGN-NKLIKIFHRD--G-----KYGFS-----D 73 (373)
T ss_dssp GGGCTTEEESCCHHHHHHHTTTCCTTEEEEEECSCC--CCEEEEEEETTE-EEEEEECCSS--S-----CBCSS-----S
T ss_pred cccCCccCCCCCHHHHHHHhcCCCCCCEEEeccCCCCCCCEEEEEEECCe-eEEEEEEecC--C-----eEEeC-----C
Confidence 45689998 899999999999999999999999986 6677999988655 5688887432 2 25554 3
Q ss_pred CccccchHHHHHHHHhhh
Q 039337 1043 EDTFEDLDEVVDRYIDPL 1060 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~pm 1060 (1344)
+..|.+|.|||.-|...-
T Consensus 74 ~~~F~SL~eLV~~Y~~~~ 91 (373)
T 3hhm_B 74 PLTFSSVVELINHYRNES 91 (373)
T ss_dssp SCCBSSSHHHHHHHHHSC
T ss_pred CCCcCCHHHHHHHHhhCC
Confidence 478999999999877543
No 126
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A
Probab=96.26 E-value=0.0024 Score=73.09 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=68.5
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCC---CcCcc--cccccCc
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKD---HKDIK--SLVGIGK 1037 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~---~~~~~--~~~sLG~ 1037 (1344)
-+-.+|||| +|+-.+|+++|...+.|.++||.|+.-....+|+++.. +-..|+.|...... .++.. ....-+.
T Consensus 7 ~~~~~~WyhG~isR~eAe~lL~~~~~G~FLVR~S~~~~g~y~LSv~~~-~~v~H~~I~~~~~~~~~~~~~~~~~~~~~~~ 85 (304)
T 2eyz_A 7 SEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSEN-SRVSHYIINSSGPRPPVPPSPAQPPPGVSPS 85 (304)
T ss_dssp CSSSSSSCCCCCCSSHHHHTTTTCCSSCEECCSCCSSSSCCEEEECSS-SSCEEEECCCCSSCCSSCCCCCCCSSSSSCC
T ss_pred cccCCCCccCCCCHHHHHHHhcCCCCCEEEEEeCCCCCCCEEEEEEEC-CEEEEEEEeeccccccccccccccccccCCC
Confidence 356789998 89999999999988999999999987666779999874 45679888763110 00000 0000122
Q ss_pred eeeeCCccccchHHHHHHHHhhh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYIDPL 1060 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~pm 1060 (1344)
.+.+++..|.+|.|||.-|.+..
T Consensus 86 ~~~~~~~~F~sl~~LV~~y~~~~ 108 (304)
T 2eyz_A 86 RLRIGDQEFDSLPALLEFYKIHY 108 (304)
T ss_dssp CCCBTTBCCSCHHHHHTTTTTSC
T ss_pred eEEeCCcEECCHHHHHHHhhhCc
Confidence 45556789999999999988653
No 127
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.26 E-value=0.014 Score=57.13 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=64.7
Q ss_pred HhhCcccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEc-ccccccHHH
Q 039337 1067 MLSYRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFR-KRMFEDIDR 1144 (1344)
Q Consensus 1067 i~~h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~-~~~~~~~~~ 1144 (1344)
+..++.|. .-+++++|++|.. .|. -.|-+-.+...||.|.|++..+..++|--|.-...+|++. ...|+||.+
T Consensus 13 l~~~~WyhG~isR~~Ae~lL~~----~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~~ 87 (118)
T 2dlz_A 13 YTAYPWFAGNMERQQTDNLLKS----HAS-GTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLE 87 (118)
T ss_dssp GGGSTTEEESCCHHHHHHHHHH----SCT-TBEEEECCSCSSCCEEEEEECSSSEEEEEEEEETTEEESTTSCCBSSHHH
T ss_pred cccCCceecCCCHHHHHHHhcC----CCC-CEEEEEeCCCCCCCEEEEEEECCcEEEEEEEEcCCEEEEeCCcccCCHHH
Confidence 34555564 3379999999965 233 4577777778899999999998778887788778888887 589999999
Q ss_pred HHHHHHhhc
Q 039337 1145 LVAYFQRHI 1153 (1344)
Q Consensus 1145 L~~~fK~~~ 1153 (1344)
||++++++.
T Consensus 88 LV~~y~~~~ 96 (118)
T 2dlz_A 88 LVEYYQCHS 96 (118)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHhhCc
Confidence 999999763
No 128
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=96.26 E-value=0.0088 Score=56.41 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccHHHHHHHHHhhc
Q 039337 1077 SKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1077 ~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~~~L~~~fK~~~ 1153 (1344)
+++++|++|.. .|.--.|-+-.+...||.|.|++..+..+.|--|..+++| |.+.+..|+||.+||++++++.
T Consensus 11 sR~~Ae~lL~~----~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~y~~~~ 84 (96)
T 1jyr_A 11 PRAKAEEMLSK----QRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTS 84 (96)
T ss_dssp CHHHHHHHHHT----CCSTTBEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCEESSSCEESSHHHHHHHTTSSC
T ss_pred CHHHHHHHHhc----CCCCcEEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHHHhhCC
Confidence 78999999953 3334567777788899999999999877777777766655 8888899999999999998774
No 129
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform; adapter protein, signaling protein; 2.00A {Mus musculus} PDB: 2hdx_A* 1rpy_A 1rqq_C*
Probab=96.21 E-value=0.011 Score=57.21 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=64.2
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDIDR 1144 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~~~ 1144 (1344)
+..++-|.. -+++++|++|..... ..--.|-+-.+...||.|.|++..+..++|--|..+++| |.+....|+||.+
T Consensus 6 l~~~~WyhG~isR~~Ae~lL~~~g~--~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~ 83 (111)
T 2hdv_A 6 LSGYPWFHGMLSRLKAAQLVLEGGT--GSHGVFLVRQSETRRGECVLTFNFQGKAKHLRLSLNAAGQCRVQHLHFQSIFD 83 (111)
T ss_dssp GGGSTTEEEECCHHHHHHHHHTTGG--GGTTEEEEEECSSCTTEEEEEEEETTEEEEEEEEECTTCCEEETTEEESSHHH
T ss_pred cccCCCcCCCCCHHHHHHHHHHcCC--CCCCeEEEEecCCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEeCCceeCCHHH
Confidence 344555542 379999999954310 022356666688999999999999877878778776666 5666789999999
Q ss_pred HHHHHHhhcCC
Q 039337 1145 LVAYFQRHIDD 1155 (1344)
Q Consensus 1145 L~~~fK~~~~d 1155 (1344)
||++++++...
T Consensus 84 LV~~y~~~~l~ 94 (111)
T 2hdv_A 84 MLEHFRVHPIP 94 (111)
T ss_dssp HHHHHTTSCCC
T ss_pred HHHHHhhCCcc
Confidence 99999977543
No 130
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=96.19 E-value=0.026 Score=55.35 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=60.6
Q ss_pred Ccccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecC-ceEEc--ccccccHHHH
Q 039337 1070 YRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPK-GFKFR--KRMFEDIDRL 1145 (1344)
Q Consensus 1070 h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~-gf~~~--~~~~~~~~~L 1145 (1344)
++-|. .-+++++|++|+ .+|. -.|-+-.+...|| |.|++..+..++|--|...++ +|.+. ...|+||.+|
T Consensus 16 ~~WyhG~isR~~Ae~lL~----~~~~-G~FLVR~S~~~~~-y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~~F~sl~eL 89 (119)
T 2cs0_A 16 PEWFHGAISREDAENLLE----SQPL-GSFLIRVSHSHVG-YTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDAL 89 (119)
T ss_dssp CSSBCSSCCHHHHHHHHH----TSCT-TCEEEEECSSSSS-EEEEECCSSSCEEEEEEECTTSCEECTTCSCCBSSHHHH
T ss_pred CCccccCCCHHHHHHHhc----CCCC-CEEEEEecCCCCC-EEEEEEECCEEEEEEEEEcCCCcEEEecCCCcCCCHHHH
Confidence 34444 237899999994 2332 4577777888999 999999887788888887777 58886 5799999999
Q ss_pred HHHHHhhc
Q 039337 1146 VAYFQRHI 1153 (1344)
Q Consensus 1146 ~~~fK~~~ 1153 (1344)
|++++++.
T Consensus 90 V~~y~~~~ 97 (119)
T 2cs0_A 90 VTFHQQKP 97 (119)
T ss_dssp HHHHTTSC
T ss_pred HHHHhhCc
Confidence 99999764
No 131
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.015 Score=56.33 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=61.4
Q ss_pred cccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccHHHHHHH
Q 039337 1071 RKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDIDRLVAY 1148 (1344)
Q Consensus 1071 ~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~~~L~~~ 1148 (1344)
+-|. .-+++++|++|. .+ .--.|-+-.+...||.|.|++..+..+.|--|.-+++| |.+.+..|+||.+||++
T Consensus 20 ~Wyhg~isR~~Ae~lL~----~~-~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~F~sl~~LV~~ 94 (111)
T 2eo3_A 20 AWYMGPVSRQEAQTRLQ----GQ-RHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEF 94 (111)
T ss_dssp HHEEESCCHHHHHHHHS----SC-CTTCEEEEECSSSSSCEEEEEEETTEEEEEEEEEETTTEEEETTCCBSSHHHHHHH
T ss_pred CcccCCCCHHHHHHHhc----CC-CCceEEEEeecCCCCCEEEEEEeCCeEEEEEEEEcCCCCEEECCcccCCHHHHHHH
Confidence 4444 337899999994 22 23457777788899999999998777777777765555 88889999999999999
Q ss_pred HHhhcC
Q 039337 1149 FQRHID 1154 (1344)
Q Consensus 1149 fK~~~~ 1154 (1344)
++++.-
T Consensus 95 y~~~~l 100 (111)
T 2eo3_A 95 YKIHYL 100 (111)
T ss_dssp HTTSCS
T ss_pred HhhCCC
Confidence 998754
No 132
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=96.15 E-value=0.014 Score=55.79 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=60.4
Q ss_pred Ccccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEc------cccccc
Q 039337 1070 YRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFR------KRMFED 1141 (1344)
Q Consensus 1070 h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~------~~~~~~ 1141 (1344)
++-|. .-+++++|++|.... |. -.|-+-.+...||.|.|++..+..+.|--|.-.++| |.+. ...|+|
T Consensus 4 ~~Wyhg~isR~~Ae~lL~~~~---~~-G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~s 79 (104)
T 1d4t_A 4 VAVYHGKISRETGEKLLLATG---LD-GSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRK 79 (104)
T ss_dssp CTTBCCSCCHHHHHHHHHHHC---CT-TEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEEECBCTTSCCCCBSS
T ss_pred CceEccCCCHHHHHHHHHhcC---CC-CEEEEeeCCCCCCCEEEEEEECCeEEEEEEEECCCCeEEEeccCCCCCcccCC
Confidence 34444 237899999996532 22 457676787899999999999877777777766776 5555 589999
Q ss_pred HHHHHHHHHhhc
Q 039337 1142 IDRLVAYFQRHI 1153 (1344)
Q Consensus 1142 ~~~L~~~fK~~~ 1153 (1344)
|.+||++++++-
T Consensus 80 l~~LV~~y~~~~ 91 (104)
T 1d4t_A 80 IKNLISAFQKPD 91 (104)
T ss_dssp HHHHHHHHTSSS
T ss_pred HHHHHHHHhhCC
Confidence 999999999873
No 133
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=96.08 E-value=0.022 Score=54.02 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred cccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEc-ccccccHHHHHH
Q 039337 1071 RKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFR-KRMFEDIDRLVA 1147 (1344)
Q Consensus 1071 ~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~-~~~~~~~~~L~~ 1147 (1344)
+-|. .-+++++|++|.... ..--.|-+-.+...||.|.|++..+..+.|--|..+++| |.+. ...|+||.+||+
T Consensus 3 ~Wyhg~isR~~Ae~lL~~~g---~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl~~LV~ 79 (100)
T 1rja_A 3 PWFFGCISRSEAVRRLQAEG---NATGAFLIRVSEKPSADYVLSVRDTQAVRHYKIWRRAGGRLHLNEAVSFLSLPELVN 79 (100)
T ss_dssp CCBCTTCCHHHHHHHHSSTT---CSSCCEEEEECSSSSSCEEEEECTTSSCEEEEEEECSSSCEEEETTEEESSHHHHHH
T ss_pred CcccCCCCHHHHHHHHhccC---CCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCcEEECCCCccCCHHHHHH
Confidence 3443 237899999994321 122357777788899999999998877888778776666 6555 589999999999
Q ss_pred HHHhhcC
Q 039337 1148 YFQRHID 1154 (1344)
Q Consensus 1148 ~fK~~~~ 1154 (1344)
+++++..
T Consensus 80 ~y~~~~~ 86 (100)
T 1rja_A 80 YHRAQSL 86 (100)
T ss_dssp HHHHCCT
T ss_pred HHhhCCC
Confidence 9998764
No 134
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=96.01 E-value=0.016 Score=55.25 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=61.1
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEc------cccc
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFR------KRMF 1139 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~------~~~~ 1139 (1344)
|+++-|.. -+++++|++|... .| --.|-+-.+...||.|.|++..+..+.|--|..+++| |.+. ...|
T Consensus 1 m~~~Wyhg~isR~~Ae~lL~~~---~~-~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F 76 (103)
T 1i3z_A 1 MDLPYYHGCLTKRECEALLLKG---GV-DGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETDAHTPRTIF 76 (103)
T ss_dssp CCCTTEESSCCHHHHHHHHHTT---CS-TTEEEEEECSSSTTCEEEEEECSSSEEEEEEEECTTSCEEECBCTTSCCCEE
T ss_pred CCCccccCCCCHHHHHHHHhhc---CC-CceEEEEeCCCCCCCEEEEEEECCEEEEEEEEECCCCeEEEeccCCCCCccc
Confidence 34555542 3789999999532 22 2457777788899999999998877777777766666 5554 5899
Q ss_pred ccHHHHHHHHHhh
Q 039337 1140 EDIDRLVAYFQRH 1152 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~ 1152 (1344)
+||.+||++++++
T Consensus 77 ~sl~~LV~~y~~~ 89 (103)
T 1i3z_A 77 PNLQELVSKYGKP 89 (103)
T ss_dssp SSSHHHHHHTTSS
T ss_pred CCHHHHHHHHhhC
Confidence 9999999999976
No 135
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.98 E-value=0.0088 Score=67.47 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=61.4
Q ss_pred cccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEe
Q 039337 843 TLAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCR 917 (1344)
Q Consensus 843 ~l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk 917 (1344)
..++|++|-|+|+.+....+.|+|.+-..|++|.+++... .+.....|++||.|.|+|++++.. ..+.|||.
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Ga--tk~~r~~f~~GDlV~ArV~s~~~~-~~~eLsc~ 195 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGA--TKRNRPNVQVGDLIYGQFVVANKD-MEPEMVCI 195 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCC--SSCSSSSSCTTCEEEEEEEECCTT-SCCEEECS
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcc--hhhhhhhcCCCCEEEEEEEEcCCC-CceEEEec
Confidence 4579999999999999999999999888999999987632 345667899999999999999854 46889984
No 136
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain, signal transduction inhibitor nuclear protein; 1.9A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=95.97 E-value=0.032 Score=58.22 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=72.3
Q ss_pred hhhHHHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcc
Q 039337 1058 DPLVSHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRK 1136 (1344)
Q Consensus 1058 ~pm~~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~ 1136 (1344)
+.++...+.+.+++-|.. -+++++|++|+ .+|. -.|-+-.+...||.|.|++.-+..+.|--|.-...+|.+..
T Consensus 5 ~~i~~~~~~l~~~~WyhG~isR~eAe~lL~----~~~~-G~FLVR~S~~~~~~~~LSv~~~~~v~H~rI~~~~g~~~l~~ 79 (169)
T 2c9w_A 5 ARLAKALRELGQTGWYWGSMTVNEAKEKLK----EAPE-GTFLIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDS 79 (169)
T ss_dssp HHHHHHHHHHHHTSCBCTTCCHHHHHHHHT----TSCT-TCEEEEECCSTTCSEEEEEEETTEEEEEEEEEETTEEEECT
T ss_pred HHHHHHHHhcccCCccccCCCHHHHHHHcC----CCCC-cEEEEecCCCCCCeEEEEEEECCeeEEEEEEEeCCEEEEcc
Confidence 445556677888888863 37899999994 2333 34666668888999999999887777777777788899987
Q ss_pred --------cccccHHHHHHHHHhhcCC
Q 039337 1137 --------RMFEDIDRLVAYFQRHIDD 1155 (1344)
Q Consensus 1137 --------~~~~~~~~L~~~fK~~~~d 1155 (1344)
..|+||.+||++++++...
T Consensus 80 ~~~~~~~~~~F~sl~eLI~~y~~~~~~ 106 (169)
T 2c9w_A 80 IICVKSKLKQFDSVVHLIDYYVQMCKD 106 (169)
T ss_dssp TTTTGGGCCCBSCHHHHHHHHHHHTC-
T ss_pred ccCccccCCCCCCHHHHHHHHHhCcCC
Confidence 8999999999999987653
No 137
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=95.93 E-value=0.0018 Score=73.89 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=48.4
Q ss_pred ccccccccccccccccchhhc--cCCCHHHHHHHHHHHHhcCCCCCHHHHhh---ccCCCHHHHHhccCcEEEe
Q 039337 652 VGLDINLAIHREWQFAPLQFI--SGLGPRKAASLQRSLVRAGAIFTRKDFVT---AHGLGKKVFVNAVGFLRVR 720 (1344)
Q Consensus 652 vGVdiN~A~~~~~~~~~Lq~v--~GlGprkA~~ii~~r~~~g~~~sr~~L~~---v~~iG~kvf~n~a~FlrI~ 720 (1344)
..||||+|... .+.+|+-+ +|||+.+|+.||++|..+ .|.+.++|++ +.|+|++++.+...+|.|.
T Consensus 186 ~~iNiNTa~~~--~a~vL~al~~~~i~~~~A~~ii~~R~~~-gf~~v~~~~~~~~~~g~~~~~~~~~~~~l~v~ 256 (298)
T 3ci0_K 186 QQININTLDVT--QSVILEALFDPWLSPVQARALLQQRPAK-GWEDVDQFLAQPLLADVDERTKKQLKTVLSVD 256 (298)
T ss_dssp CCEETTTCCGG--GTHHHHHHTC-------CCHHHHTCCTT-CCSCHHHHHTSGGGSSSCHHHHHHHHHHEESC
T ss_pred cceeccccChh--hHHHHHHhcCCCCCHHHHHHHHHhcccC-CCCCHHHHHhhhcccCCChhhhhhccCeEEEe
Confidence 57999999731 13678888 899999999999999644 6999999987 7899999999987777765
No 138
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide complex, cytokine regulator; HET: PTR; 2.00A {Mus musculus}
Probab=95.90 E-value=0.02 Score=58.72 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=69.7
Q ss_pred hHHHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcc--
Q 039337 1060 LVSHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRK-- 1136 (1344)
Q Consensus 1060 m~~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~-- 1136 (1344)
++.....+..++-|.. -+++++|++|.. +|. -.|-+-.+...||.|.|++..+..++|--|.-...+|.+..
T Consensus 24 v~~~~~~l~~~~WyhG~isR~eAe~lL~~----~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~rI~~~~g~f~l~~~~ 98 (152)
T 2hmh_A 24 VVNAVRKLQESGFYWSAVTGGEANLLLSA----EPA-GTFLIRDSSDQRHFFTLSVKTQSGTKNLRIQXEGGSFSLQSDP 98 (152)
T ss_dssp HHHHHHHHHHTSSEETTCCHHHHHHHHHT----SCT-TEEEEEECCSTTCSEEEEEEETTEEEEEEEECGGGCBEECBCT
T ss_pred HhhhhhhhccCCCcCCCCCHHHHHHHhcC----CCC-CcEEEEeCCCCCCcEEEEEEcCCceEEEEEEecCCEEEEeccc
Confidence 3445567778887763 379999999942 333 56777778889999999999887777777777667788886
Q ss_pred ------cccccHHHHHHHHHhhc
Q 039337 1137 ------RMFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1137 ------~~~~~~~~L~~~fK~~~ 1153 (1344)
..|+||.+||++++++.
T Consensus 99 ~~~~~~~~F~SL~eLV~~Y~~~~ 121 (152)
T 2hmh_A 99 RSTQPVPRFDXVLKLVHHYMPPQ 121 (152)
T ss_dssp TCSSCCCCBSSHHHHHHHTCCCC
T ss_pred ccccccCccCCHHHHHHHHhhCc
Confidence 89999999999998874
No 139
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=95.88 E-value=0.019 Score=65.83 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=65.1
Q ss_pred cccccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCc--eeeEEEEee-cCCCCcCcccccccC
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDG--VYAHKDIIE-GGKDHKDIKSLVGIG 1036 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~--v~~HidV~E-~~K~~~~~~~~~sLG 1036 (1344)
.-+-.+|||+ +|+-.+||++|.. .+.|+++||.|+ .+...+|+++..+. ...|+.|.. .....+ ++.
T Consensus 36 ~~l~~~~Wyhg~i~R~~Ae~lL~~~~~~~G~FLVR~S~-~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g-----~~~- 108 (308)
T 3qwy_A 36 DPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSS-RPGEYSLTVREADEGNAVCHYLIERGEPKEDG-----TAA- 108 (308)
T ss_dssp CGGGGGGGEETTCCHHHHHHHHHSTTCCTTEEEEEECS-STTCEEEEEECCSSSSCEEEEEEEECCCCTTT-----TCC-
T ss_pred CcccccccccCCCCHHHHHHHHhccCCCCceEEEEccC-CCCCEEEEEEeCCCCCceEEEEEeeccCCCcC-----ccc-
Confidence 3466789988 7899999999977 457999999994 45566999988765 367998876 432210 111
Q ss_pred ceeeeCCccccchHHHHHHHHh
Q 039337 1037 KTLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1037 ~~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
..+.|+++.|.+|.|||..|-.
T Consensus 109 g~~~~~~~~F~Sl~eLv~~y~~ 130 (308)
T 3qwy_A 109 AGVKIANQSFPDIPALLNHFKM 130 (308)
T ss_dssp CCEEETTEEESSHHHHHHHHHH
T ss_pred ceEEEeCeeeCCHHHHHHHHhh
Confidence 2355667899999999987753
No 140
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit; transferase, polymorphism, UBL conjugation, phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A 1oo4_A* 2pna_A 2pnb_A
Probab=95.87 E-value=0.025 Score=55.60 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=65.7
Q ss_pred HHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCC-CcEEEEEEecCCCCceeeEEEecCceEEc-cccccc
Q 039337 1065 KAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEH-PGTFILTYIRSTNPHHEYIGLYPKGFKFR-KRMFED 1141 (1344)
Q Consensus 1065 ~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~-PG~f~L~~~~~~~~~~e~i~v~p~gf~~~-~~~~~~ 1141 (1344)
+.+..++.|.. -+++++|++|.. .|. -.|-+-.+... ||.|.|++..+..++|--|.-...+|.+. ...|+|
T Consensus 6 ~~l~~~~WyhG~isR~eAe~lL~~----~~~-G~FLVR~S~~~~~g~y~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~s 80 (120)
T 2iug_A 6 MSLQNAEWYWGDISREEVNEKLRD----TAD-GTFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSS 80 (120)
T ss_dssp HHHHTCTTBCCSCCHHHHHHHHTT----CCT-TEEEEEECSSGGGCSEEEEEEETTEEEEEEEEEETTEEESSSSCCBSS
T ss_pred cccccCCccccCCCHHHHHHHhcC----CCC-cEEEEECCCCCCCCcEEEEEEECCEEEEEEEEEcCCEEEECCCCccCC
Confidence 44566777753 378999999952 333 45666667777 99999999998777777787787888885 689999
Q ss_pred HHHHHHHHHhhcC
Q 039337 1142 IDRLVAYFQRHID 1154 (1344)
Q Consensus 1142 ~~~L~~~fK~~~~ 1154 (1344)
|.+||++++++..
T Consensus 81 l~~LI~~y~~~~~ 93 (120)
T 2iug_A 81 VVELINHYRNESL 93 (120)
T ss_dssp HHHHHHHHHHSCG
T ss_pred HHHHHHHHHhCcc
Confidence 9999999997753
No 141
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex (phosphotransferase/receptor), phosphotransferase, SH2 domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1 PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Probab=95.86 E-value=0.024 Score=54.89 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=61.3
Q ss_pred Ccccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcc--cccccHHHHH
Q 039337 1070 YRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRK--RMFEDIDRLV 1146 (1344)
Q Consensus 1070 h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~--~~~~~~~~L~ 1146 (1344)
++-|. .-+++++|++|. .. .--.|-+-.+ ..||.|.|++..+..+.|--|..+++||.|.. ..|+||.+||
T Consensus 10 ~~Wyhg~isR~~Ae~lL~----~~-~~G~FLVR~S-~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~LV 83 (112)
T 1h9o_A 10 KTWNVGSSNRNKAENLLR----GK-RDGTFLVRES-SKQGCYACSVVVDGEVKHCVINKTATGYGFAEPYNLYSSLKELV 83 (112)
T ss_dssp GGTBCCSCCHHHHHHHHT----TC-CTTEEEEEEC-SSTTCEEEEEEETTEEEEEEEEEETTEEESSTTCCCBSSHHHHH
T ss_pred CCcccCCCCHHHHHHHhc----CC-CCceEEEeec-CCCCCEEEEEEECCEEEEEEEEEcCCceEEeCCCCCcCCHHHHH
Confidence 34444 237899999994 22 2345666667 88999999999987788888888999999874 6899999999
Q ss_pred HHHHhhc
Q 039337 1147 AYFQRHI 1153 (1344)
Q Consensus 1147 ~~fK~~~ 1153 (1344)
++++++.
T Consensus 84 ~~y~~~~ 90 (112)
T 1h9o_A 84 LHYQHTS 90 (112)
T ss_dssp HHHHHSC
T ss_pred HHHhhCc
Confidence 9999753
No 142
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=95.83 E-value=0.022 Score=56.64 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=60.6
Q ss_pred Ccccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEc------cccccc
Q 039337 1070 YRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFR------KRMFED 1141 (1344)
Q Consensus 1070 h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~------~~~~~~ 1141 (1344)
++-|. .-+++++|++|.... |. -.|-+-.+...||.|.|++..+..++|--|.-+++| |.+. ...|+|
T Consensus 4 ~~WyhG~isR~eAe~lL~~~~---~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~s 79 (128)
T 1ka6_A 4 VAVYHGKISRETGEKLLLATG---LD-GSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRK 79 (128)
T ss_dssp CSSBCCSCCHHHHHHHHHHHC---CT-TCEEEEECSSSTTCEEEEEESSSCEEEEEEEECTTSCEEEECSTTSCCCEESS
T ss_pred CcccCCCCCHHHHHHHHhcCC---CC-CEEEEeecCCCCCCEEEEEEeCCEEEEEEEEECCCCeEEEeecCCCCCCccCC
Confidence 34443 237899999996532 22 456676687899999999999877777777766776 5555 589999
Q ss_pred HHHHHHHHHhhc
Q 039337 1142 IDRLVAYFQRHI 1153 (1344)
Q Consensus 1142 ~~~L~~~fK~~~ 1153 (1344)
|.+||++++++-
T Consensus 80 l~~LV~~y~~~~ 91 (128)
T 1ka6_A 80 IKNLISAFQKPD 91 (128)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHHHhhCC
Confidence 999999999773
No 143
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=95.82 E-value=0.032 Score=56.22 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=65.8
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEc-----CCCcch
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLG-----AVNLSC 534 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG-----~~t~s~ 534 (1344)
++||+ |+|..-|=+|+-|+.|.+.--+ ..+..+ ....+.+.|.+++++++|+.|||| +||.+.
T Consensus 4 ~iLgl--D~G~kriGvAvsd~~~~~A~pl--~ti~~~--------~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~ 71 (138)
T 1nu0_A 4 TLMAF--DFGTKSIGVAVGQRITGTARPL--PAIKAQ--------DGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQP 71 (138)
T ss_dssp EEEEE--ECCSSEEEEEEEETTTTEEEEE--EEEEEE--------TTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCH
T ss_pred eEEEE--EeCCCEEEEEEEcCCCCEEeeE--EEEEcC--------CcchHHHHHHHHHHHcCCCEEEEecccCCCcCcCH
Confidence 79998 9998666688889988764321 111111 012246789999999999999999 887663
Q ss_pred hhhHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHhhh
Q 039337 535 TSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENS 579 (1344)
Q Consensus 535 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s 579 (1344)
..+.++.|..++.+. . +++|+++||...++-+..
T Consensus 72 --~~~~~~~f~~~L~~~--------~-~lpV~~~DERlTT~~A~~ 105 (138)
T 1nu0_A 72 --LTARARKFANRIHGR--------F-GVEVKLHDERLSTVEARS 105 (138)
T ss_dssp --HHHHHHHHHHHHHHH--------H-CCCEEEEEEECCCCCC--
T ss_pred --HHHHHHHHHHHHHHH--------h-CCCEEEEcCCcCHHHHHH
Confidence 234566677666542 1 489999999887655443
No 144
>2lnw_A VAV-2, guanine nucleotide exchange factor VAV2; signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2lnx_A
Probab=95.72 E-value=0.03 Score=55.24 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=64.3
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEc-ccccccHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFR-KRMFEDIDR 1144 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~-~~~~~~~~~ 1144 (1344)
+...+-|.. -+++++|++|.. +| --.|.+-.+...||.|.|++.-+..+.|--|.-...+|++. ...|+||.+
T Consensus 19 l~~~~WyhG~isR~eAe~lL~~----~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~l~~~~~F~sl~e 93 (122)
T 2lnw_A 19 YTAYPWFAGNMERQQTDNLLKS----HA-SGTYLIRERPAEAERFAISIKFNDEVKHIKVVEKDNWIHITEAKKFDSLLE 93 (122)
T ss_dssp STTSTTBCCSCCHHHHHHHHHH----SC-TTBEEEEECCCSSEEEEEEEECSSCEEEEEEEEETTEEESSSSCCBSSHHH
T ss_pred cccCcCCCcCCCHHHHHHHhcC----CC-CCeEEEEeCCCCCCcEEEEEEeCCcEEEEEEEEcCCEEEECCCCeECCHHH
Confidence 334555653 379999999964 22 33566666888999999999998888888888888888887 589999999
Q ss_pred HHHHHHhh
Q 039337 1145 LVAYFQRH 1152 (1344)
Q Consensus 1145 L~~~fK~~ 1152 (1344)
||++++.+
T Consensus 94 LV~~y~~~ 101 (122)
T 2lnw_A 94 LVEYYQCH 101 (122)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhhC
Confidence 99999987
No 145
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*
Probab=94.68 E-value=0.0018 Score=74.14 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=66.2
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
.+-.+|||| +|+-.+|+++|...+.|.++||.|.......+|+++..+ -..|+.|.... ++ .| .++
T Consensus 8 ~~~~~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~-~v~H~~I~~~~--~g----~~------~~~ 74 (303)
T 2lqn_A 8 SSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENS-RVSHYIINSLP--NR----RF------KIG 74 (303)
Confidence 345689998 899999999999999999999999766777799998754 56788886532 21 13 345
Q ss_pred CccccchHHHHHHHHhhhH
Q 039337 1043 EDTFEDLDEVVDRYIDPLV 1061 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~pm~ 1061 (1344)
+..|.+|.|||.-|.+.-.
T Consensus 75 ~~~F~sl~~Lv~~y~~~~~ 93 (303)
T 2lqn_A 75 DQEFDHLPALLEFYKIHYL 93 (303)
Confidence 6899999999999875443
No 146
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=95.65 E-value=0.031 Score=53.77 Aligned_cols=83 Identities=24% Similarity=0.257 Sum_probs=59.9
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEE-cccccccHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKF-RKRMFEDIDR 1144 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~-~~~~~~~~~~ 1144 (1344)
+.+++-|.. -+++++|++|... +|. -.|-+-.+...||.|.|++.-+..++|--|.-....|.+ ....|+||.+
T Consensus 4 l~~~~Wyhg~isr~~Ae~lL~~~---~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~ 79 (109)
T 3tkz_A 4 MTSRRWFHPNITGVEAENLLLTR---GVD-GSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAE 79 (109)
T ss_dssp ---CCSBCTTCCHHHHHHHHHHH---CCT-TEEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSCEESSSSCCBSSHHH
T ss_pred cccCCceecCCCHHHHHHHHhcC---CCC-CEEEEEecCCCCCCEEEEEEECCEEEEEEEEeCCCEEEecCCcccCCHHH
Confidence 445666653 2789999999653 232 346666677799999999998877777777665544555 4889999999
Q ss_pred HHHHHHhhc
Q 039337 1145 LVAYFQRHI 1153 (1344)
Q Consensus 1145 L~~~fK~~~ 1153 (1344)
||++++++-
T Consensus 80 LV~~y~~~~ 88 (109)
T 3tkz_A 80 LVQYYMEHH 88 (109)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCc
Confidence 999999864
No 147
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=95.54 E-value=0.038 Score=53.28 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=60.6
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC------CCCceeeEEEecCc-eEEc-cc
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS------TNPHHEYIGLYPKG-FKFR-KR 1137 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~------~~~~~e~i~v~p~g-f~~~-~~ 1137 (1344)
+..++-|.. -+++++|++|... +|. -.|-+-.+ ..||.|.|++..+ ..++|--|..+++| |++. ..
T Consensus 8 l~~~~Wyhg~isR~~Ae~lL~~~---~~~-G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~ 82 (110)
T 2ekx_A 8 LDDYDWFAGNISRSQSEQLLRQK---GKE-GAFMVRNS-SQVGMYTVSLFSKAVNDKKGTVKHYHVHTNAENKLYLAENY 82 (110)
T ss_dssp TTTSSSBCCSCCHHHHHHHHHHT---CCT-TEEEEEEC-SSTTCEEEEECCCCSSCSSCCCEEEECEECTTCCEESSTTC
T ss_pred ccCCCeecCCCCHHHHHHHHhcc---CCC-ceEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEECCCCCEEECCCC
Confidence 344555543 3789999999643 233 45666667 6799999999963 35667777777777 7775 57
Q ss_pred ccccHHHHHHHHHhhc
Q 039337 1138 MFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1138 ~~~~~~~L~~~fK~~~ 1153 (1344)
.|+||.+||++++++-
T Consensus 83 ~F~sl~~LV~~y~~~~ 98 (110)
T 2ekx_A 83 CFDSIPKLIHYHQHNS 98 (110)
T ss_dssp CCSCHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHeeCC
Confidence 9999999999999875
No 148
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine, tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Probab=95.52 E-value=0.027 Score=54.90 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=58.6
Q ss_pred hCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEe-cCc-eEEc----cccccc
Q 039337 1069 SYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLY-PKG-FKFR----KRMFED 1141 (1344)
Q Consensus 1069 ~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~-p~g-f~~~----~~~~~~ 1141 (1344)
+++-|.. -+++++|++|.... +| --.|-+-.+...||.|.|++.-+..++|--|..+ .+| |+|. ...|+|
T Consensus 13 ~~~Wyhg~isR~~Ae~lL~~~g--~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~s 89 (117)
T 3pqz_A 13 TQLWFHGRISREESQRLIGQQG--LV-DGLFLVRESQRNPQGFVLSLCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTD 89 (117)
T ss_dssp GCTTBCCSCCHHHHHHHHHHTT--CC-TTEEEEEECCC-CCCEEEEEEETTEEEEEEEEEECCTTCCEEESSTTSSCBSS
T ss_pred cCccccCCCCHHHHHHHHhcCC--CC-CCEEEEEecCCCCCcEEEEEEeCCeeEEEEEEEecCCCCEEEEECCCCcccCC
Confidence 3444442 27899999996521 22 2356666688889999999999877777777665 466 4554 589999
Q ss_pred HHHHHHHHHhhc
Q 039337 1142 IDRLVAYFQRHI 1153 (1344)
Q Consensus 1142 ~~~L~~~fK~~~ 1153 (1344)
|.+||++++++-
T Consensus 90 l~~LV~~y~~~~ 101 (117)
T 3pqz_A 90 LLQLVEFHQLNR 101 (117)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhhCC
Confidence 999999999764
No 149
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1, solution structure, cell junctio membrane, hydrolase, membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Probab=95.51 E-value=0.022 Score=56.86 Aligned_cols=73 Identities=23% Similarity=0.193 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCC---------------CCceeeEEEecCceEE----cc
Q 039337 1076 GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRST---------------NPHHEYIGLYPKGFKF----RK 1136 (1344)
Q Consensus 1076 g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~---------------~~~~e~i~v~p~gf~~----~~ 1136 (1344)
-+++++|++|.. . .--.|.+-.+...||.|.|++.... .+.|--|..+++||++ ..
T Consensus 27 isR~eAe~lL~~----~-~~G~FLVR~S~s~~g~y~LSv~~~~~~~~~~~~~g~~~~~~v~H~~I~~~~~g~~l~g~~~~ 101 (131)
T 2kno_A 27 LSRDQAIALLKD----K-DPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSE 101 (131)
T ss_dssp CCHHHHHHHHTT----S-CTTBEEEEECSSSTTEEEEEEECSCCSSSSSSCCSCHHHHHEEEEEEECCSSCCCEETCSSC
T ss_pred CCHHHHHHHhcC----C-CCCeEEEecCCCCCCCEEEEEEeCCCCcccccccccccCCceEEEEEEECCCCCEEecCCCC
Confidence 378999999952 2 2345666678889999999999753 3455557777899999 67
Q ss_pred cccccHHHHHHHHHhhc
Q 039337 1137 RMFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1137 ~~~~~~~~L~~~fK~~~ 1153 (1344)
..|+||.+||++++.+.
T Consensus 102 ~~F~SL~eLV~~y~~~~ 118 (131)
T 2kno_A 102 PYFGSLSALVSQHSISP 118 (131)
T ss_dssp CCCCSHHHHHHTTTTCC
T ss_pred CccCCHHHHHHHHhhCC
Confidence 89999999999988754
No 150
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_A 3t04_A 1ab2_A
Probab=95.51 E-value=0.037 Score=53.54 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=61.7
Q ss_pred hCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEc--ccccccHHHH
Q 039337 1069 SYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFR--KRMFEDIDRL 1145 (1344)
Q Consensus 1069 ~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~--~~~~~~~~~L 1145 (1344)
.++-|.. -+++++|++|+ +..--.|.+-.+...||.|.|++.-+..++|--|..+++|.+|- ...|+||.+|
T Consensus 4 ~~~Wyhg~isR~~Ae~lL~-----~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~~~~~~F~sl~~L 78 (112)
T 3k2m_A 4 KHSWYHGPVSRNAAEYLLS-----SGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAEL 78 (112)
T ss_dssp GSTTEEESCCHHHHHHHTT-----TCCTTEEEEEECSSSTTCEEEEEEETTEEEEEEEEECTTSCEESSTTCCBSSHHHH
T ss_pred cCcceeeCCCHHHHHHHhc-----cCCCceEEEEeCCCCCCCEEEEEEeCCcEEEEEEEECCCCcEEECCCCeECCHHHH
Confidence 4455542 37899999994 22234677767888999999999998778888888878886554 6899999999
Q ss_pred HHHHHhh
Q 039337 1146 VAYFQRH 1152 (1344)
Q Consensus 1146 ~~~fK~~ 1152 (1344)
|++++++
T Consensus 79 V~~y~~~ 85 (112)
T 3k2m_A 79 VHHHSTV 85 (112)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 9999986
No 151
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=95.49 E-value=0.048 Score=53.40 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=60.9
Q ss_pred hCcccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcc------cccc
Q 039337 1069 SYRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRK------RMFE 1140 (1344)
Q Consensus 1069 ~h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~------~~~~ 1140 (1344)
.++-|. .-+++++|++|... .|. -.|-+-.+...||.|.|++..+..++|--|.-+++| |.+.. ..|+
T Consensus 9 ~~~WyhG~isR~eAe~lL~~~---~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~g~~~~~F~ 84 (119)
T 2ysx_A 9 VPCWNHGNITRSKAEELLSRT---GKD-GSFLVRASESISRAYALCVLYRNCVYTYRILPNEDDKFTVQASEGVSMRFFT 84 (119)
T ss_dssp CCSSEEESCCHHHHHHHHHHH---CCT-TEEEEEECSSCTTSEEEEEECSSCEEEEEEEECTTSCEEECCSCSSSCCCBS
T ss_pred CCccccCCCCHHHHHHHHhhc---CCC-CEEEEEeCCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeccCCcCCcccC
Confidence 345554 23799999999643 222 456666788899999999998877777777765555 77764 6899
Q ss_pred cHHHHHHHHHhhc
Q 039337 1141 DIDRLVAYFQRHI 1153 (1344)
Q Consensus 1141 ~~~~L~~~fK~~~ 1153 (1344)
||.+||++++++.
T Consensus 85 sl~eLV~~y~~~~ 97 (119)
T 2ysx_A 85 KLDQLIEFYKKEN 97 (119)
T ss_dssp SHHHHHHHTTSSS
T ss_pred CHHHHHHHHhhCC
Confidence 9999999999764
No 152
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.47 E-value=0.028 Score=55.14 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=62.0
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCce-EE-cccccccH
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGF-KF-RKRMFEDI 1142 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf-~~-~~~~~~~~ 1142 (1344)
.+..++-|.. -+++++|++|. ..| --.|-+-.+...||.|.|++..+..++|--|..+++|. ++ ....|+||
T Consensus 12 ~l~~~~WyhG~isR~~Ae~lL~----~~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~l~~~~~F~sl 86 (119)
T 2ecd_A 12 SLEKHSWYHGPVSRSAAEYLLS----SLI-NGSFLVRESESSPGQLSISLRYEGRVYHYRINTTADGKVYVTAESRFSTL 86 (119)
T ss_dssp CCCCSSSEEEECCHHHHHHHHH----TSC-TTBEEEEEESSSTTEEEEEEECSSCEEEECCCCCSSSCCCCCSSCCCSSH
T ss_pred ccccCccccCCCCHHHHHHHhc----CCC-CCeEEEEeCCCCCCCEEEEEEECCeEEEEEEEEcCCCCEEEcCCCcCCCH
Confidence 3445666652 37999999994 223 24677777888999999999998777776676667774 44 37899999
Q ss_pred HHHHHHHHhh
Q 039337 1143 DRLVAYFQRH 1152 (1344)
Q Consensus 1143 ~~L~~~fK~~ 1152 (1344)
.+||++++++
T Consensus 87 ~~LV~~y~~~ 96 (119)
T 2ecd_A 87 AELVHHHSTV 96 (119)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999999987
No 153
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein binding/transferase complex; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=95.46 E-value=0.048 Score=52.55 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecC------------------ceEEccc
Q 039337 1076 GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPK------------------GFKFRKR 1137 (1344)
Q Consensus 1076 g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~------------------gf~~~~~ 1137 (1344)
-+++++|++|. .+| --.|-+-.+...||.|.|++..+..+.|--|.-..+ .|.+...
T Consensus 7 isr~~Ae~lL~----~~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~g~~~~~~~l~~~ 81 (109)
T 1ju5_A 7 LSRQEAVALLQ----GQR-HGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQ 81 (109)
T ss_dssp CCHHHHHHHHT----TCC-TTEEEEEECSSSTTEEEEEEECSSCEEEEEEECCSSSSCCCCCCSSCCTTCCCCCEEETTE
T ss_pred CCHHHHHHHhc----CCC-CCEEEEEecCCCCCCEEEEEEECCeEEEEEEEECCCCcccccccccccccccccEEEeCCc
Confidence 37899999994 233 345777778888999999999886676665655442 3778899
Q ss_pred ccccHHHHHHHHHhhc
Q 039337 1138 MFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1138 ~~~~~~~L~~~fK~~~ 1153 (1344)
.|+||.+||++++++.
T Consensus 82 ~F~sl~~LV~~y~~~~ 97 (109)
T 1ju5_A 82 EFDSLPALLEFYKIHY 97 (109)
T ss_dssp EESSHHHHHHHHHHSC
T ss_pred ccCCHHHHHHHHhhCC
Confidence 9999999999999874
No 154
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=95.44 E-value=0.035 Score=53.17 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=61.6
Q ss_pred hCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEc-ccccccHHHHH
Q 039337 1069 SYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFR-KRMFEDIDRLV 1146 (1344)
Q Consensus 1069 ~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~-~~~~~~~~~L~ 1146 (1344)
..+-|.. -+++++|++|. +..--.|-+-.+...||.|.|++.-+..++|--|......|.+. ...|+||.+||
T Consensus 7 ~~~Wyhg~isr~~Ae~lL~-----~~~~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~l~~~~~F~sl~~Lv 81 (106)
T 3eaz_A 7 LMPWFHGKITREQAERLLY-----PPETGLFLVRESTNYPGDYTLCVSSDGKVEHYRIMYHASKLSIDEEVYFENLMQLV 81 (106)
T ss_dssp GCTTBCCSCCHHHHHHHTC-----SCCTTEEEEEECTTSTTCEEEEEEETTEEEEEECEEETTEEESSSSSCBSSHHHHH
T ss_pred cCCCcCCCCCHHHHHHHhC-----CCCCCEEEEEECCCCCCcEEEEEEeCCceEEEEEEecCCEEEECCCCccCCHHHHH
Confidence 4445542 27899999994 22234566666888999999999998778887787777778777 67899999999
Q ss_pred HHHHhhc
Q 039337 1147 AYFQRHI 1153 (1344)
Q Consensus 1147 ~~fK~~~ 1153 (1344)
++++++-
T Consensus 82 ~~y~~~~ 88 (106)
T 3eaz_A 82 EHYTSDA 88 (106)
T ss_dssp HHHHHCC
T ss_pred HHHhhCC
Confidence 9999873
No 155
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=95.42 E-value=0.035 Score=52.28 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred Cccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEc-ccccccHHHHHH
Q 039337 1070 YRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFR-KRMFEDIDRLVA 1147 (1344)
Q Consensus 1070 h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~-~~~~~~~~~L~~ 1147 (1344)
++-|.. -+++++|++|. ++.--.|-+-.+...||.|.|++.-+..++|--|.-...+|.+. ...|+||.+||+
T Consensus 5 ~~Wyhg~isr~~Ae~lL~-----~~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~Lv~ 79 (98)
T 3us4_A 5 MPWFHGKISGQEAVQQLQ-----PPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGHLTIDEAVFFCNLMDMVE 79 (98)
T ss_dssp CTTBCCSCCHHHHHHHTC-----SCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEETTEEESSSSSEESSHHHHHH
T ss_pred CcccCCCCCHHHHHHHcc-----CCCCcEEEEEeCCCCCCcEEEEEEECCceEEEEEEEeCCEEEECCCCccCCHHHHHH
Confidence 344442 27899999994 22234577777888999999999998778888888888888887 579999999999
Q ss_pred HHHhhc
Q 039337 1148 YFQRHI 1153 (1344)
Q Consensus 1148 ~fK~~~ 1153 (1344)
+++++-
T Consensus 80 ~y~~~~ 85 (98)
T 3us4_A 80 HYSKDK 85 (98)
T ss_dssp HHHHCC
T ss_pred HhhhCC
Confidence 999875
No 156
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}
Probab=95.31 E-value=0.022 Score=57.65 Aligned_cols=90 Identities=9% Similarity=0.070 Sum_probs=63.7
Q ss_pred HHHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCC--CCcEEEEEEecCCCCceeeEEEecCc--eEEc
Q 039337 1061 VSHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHE--HPGTFILTYIRSTNPHHEYIGLYPKG--FKFR 1135 (1344)
Q Consensus 1061 ~~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~--~PG~f~L~~~~~~~~~~e~i~v~p~g--f~~~ 1135 (1344)
+...+.+..++.|.. -+++++|++|.... + --.|-+-.+.. .||.|.|++.-+..+.|--|....+| |.+.
T Consensus 14 ~~~~~~l~~~~WyhG~isR~eAe~lL~~~~---~-~G~FLVR~S~~~~~~g~y~LSv~~~~~v~H~~I~~~~~g~~~~l~ 89 (141)
T 2eo6_A 14 ADQEAELLGKPWYAGACDRKSAEEALHRSN---K-DGSFLIRKSSGHDSKQPYTLVAFFNKRVYNIPVRFIEATKQYALG 89 (141)
T ss_dssp HHHHHTTTTCSSEEESCCHHHHHHHHHHHC---C-TTCBCEEECSTTCSSCSEEEEEEETTEEEEEEECEETTTTEECSS
T ss_pred CccccccCCCCeEecCCCHHHHHHHhhccC---C-CceEEEEECCCCCCCCCEEEEEEECCEEEEEEEEEeCCCCEEEEc
Confidence 333455667777763 47999999996432 2 22344444554 89999999998766777666655566 5554
Q ss_pred -----ccccccHHHHHHHHHhhcC
Q 039337 1136 -----KRMFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1136 -----~~~~~~~~~L~~~fK~~~~ 1154 (1344)
...|+||.+||+|++++-.
T Consensus 90 ~~~~~~~~F~sl~eLV~~y~~~~~ 113 (141)
T 2eo6_A 90 KKKNGEEYFGSVVEIVNSHQHNPL 113 (141)
T ss_dssp SCCTTCCCBSSHHHHHHHHHHSCC
T ss_pred cccCCCCccCCHHHHHHHHhhCCc
Confidence 5899999999999998754
No 157
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=95.27 E-value=0.029 Score=53.58 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEec-Cc---eEEc--ccccccHHHHHHHHH
Q 039337 1077 SKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYP-KG---FKFR--KRMFEDIDRLVAYFQ 1150 (1344)
Q Consensus 1077 ~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p-~g---f~~~--~~~~~~~~~L~~~fK 1150 (1344)
+++++|++|.... +| --.|-+-.+...||.|.|++..+..+.|--|.-++ +| |.+. ...|+||.+||++++
T Consensus 13 sR~~Ae~lL~~~g--~~-~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~~g~~~~~~~~~~~~F~sl~~LV~~y~ 89 (105)
T 1nrv_A 13 SREESHRIIKQQG--LV-DGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEDDGQTFFSLDDGNTKFSDLIQLVDFYQ 89 (105)
T ss_dssp CHHHHHHHHHHTT--CC-TTEEEEEECSSCTTCEEEEEEETTEEEEEEEEEC-----CCEESSTTSSCBSSHHHHHHHHT
T ss_pred CHHHHHHHHHhcC--CC-CceEEEEeCCCCCCCEEEEEEeCCEEEEEEEEEEcCCCCEEEEEcCCCcccCCHHHHHHHhh
Confidence 7899999996421 12 23566666878899999999988767776676654 56 3343 589999999999999
Q ss_pred hh
Q 039337 1151 RH 1152 (1344)
Q Consensus 1151 ~~ 1152 (1344)
++
T Consensus 90 ~~ 91 (105)
T 1nrv_A 90 LN 91 (105)
T ss_dssp TC
T ss_pred hC
Confidence 75
No 158
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase, phosphotransferase, phosphorylation; NMR {Mus musculus} SCOP: d.93.1.1 PDB: 1blk_A
Probab=95.27 E-value=0.025 Score=54.88 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=59.7
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec----CCCCceeeEEEecCc-eEEc-cccc
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR----STNPHHEYIGLYPKG-FKFR-KRMF 1139 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~----~~~~~~e~i~v~p~g-f~~~-~~~~ 1139 (1344)
+..++-|.. -+++++|++|.... + .--.|-+-.+...||.|.|++.. +..++|--|.-+++| |++. ...|
T Consensus 9 l~~~~Wyhg~isR~~Ae~lL~~~g--~-~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F 85 (114)
T 1blj_A 9 LEVEKWFFRTISRKDAERQLLAPM--N-KAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRITF 85 (114)
T ss_dssp SCCSSSBCCSCCHHHHHHHHSSTT--C-CTTCEEBCBCTTCSSCEEEEECBCCTTTCBCCCEEEEEETTTEEEEETTEEE
T ss_pred cccCCccCCCCCHHHHHHHHhhCC--C-CCceEEEEeCCCCCCCEEEEEEEecCCCCcEEEEEEEEcCCCCEEECCCccc
Confidence 444555542 37899999994321 1 22345555577889999999997 445777777776554 7775 6899
Q ss_pred ccHHHHHHHHHhh
Q 039337 1140 EDIDRLVAYFQRH 1152 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~ 1152 (1344)
+||.+||++++++
T Consensus 86 ~sl~~LV~~y~~~ 98 (114)
T 1blj_A 86 PTLQALVQHYSKK 98 (114)
T ss_dssp SSHHHHHHHHHHC
T ss_pred CCHHHHHHHhhhC
Confidence 9999999999987
No 159
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth regulation, transforming protein, alternative initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB: 1tce_A*
Probab=95.20 E-value=0.01 Score=56.72 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=59.8
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRL 1145 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~L 1145 (1344)
+.+++.|.. -+++++|++|. + --.|-+-.+...||.|.|++..+..++|--|.-....|.+.+..|+||.+|
T Consensus 4 l~~~~Wyhg~isR~~Ae~lL~------~-~G~FLVR~S~~~~g~~~LSv~~~~~v~H~~I~~~~g~~~~~~~~F~sl~~L 76 (104)
T 1mil_A 4 LRGEPWFHGKLSRREAEALLQ------L-NGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHL 76 (104)
T ss_dssp TTTCTTBCSSCCHHHHHTTCC------S-TTEEEEEECCSSCSSEEEEEEETTEEEEEEEBCTTSSEECSSCEESSHHHH
T ss_pred cccCCcCCCCCCHHHHHHHhc------c-CCcEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCEEEECCceeCCHHHH
Confidence 445566653 37899999995 2 235666668889999999999887676665653333466778999999999
Q ss_pred HHHHHhhc
Q 039337 1146 VAYFQRHI 1153 (1344)
Q Consensus 1146 ~~~fK~~~ 1153 (1344)
|++++++-
T Consensus 77 I~~y~~~~ 84 (104)
T 1mil_A 77 ISYHMDNH 84 (104)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhCC
Confidence 99999874
No 160
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=95.17 E-value=0.04 Score=54.44 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=60.9
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccc-cccHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRM-FEDIDR 1144 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~-~~~~~~ 1144 (1344)
+..++-|.. -+++++|++|... |.--.|-+-.+. .||.|.|++..+..++|--|.-....|.+.... |+||.+
T Consensus 16 l~~~~WyhG~isR~eAe~lL~~~----~~~G~FLVR~S~-~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~ 90 (124)
T 2eob_A 16 HESKPWYYDRLSRGEAEDMLMRI----PRDGAFLIRKRE-GTDSYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVE 90 (124)
T ss_dssp TTTSTTEESSCCHHHHHHHHHHC----CSSSEEEEECCT-TSSCEEEEEEETTEEEEEEEEESSSCEESSSSCCBSSHHH
T ss_pred cCcCCCeecCCCHHHHHHHHhcC----CCCCEEEEEecC-CCCCEEEEEEeCCeEEEEEEEECCCEEEECCCCcCCCHHH
Confidence 344555543 3789999999643 333466666677 899999999988777776677665567777666 999999
Q ss_pred HHHHHHhhc
Q 039337 1145 LVAYFQRHI 1153 (1344)
Q Consensus 1145 L~~~fK~~~ 1153 (1344)
||++++++.
T Consensus 91 LV~~y~~~~ 99 (124)
T 2eob_A 91 LVSYYEKHA 99 (124)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHhhCC
Confidence 999999764
No 161
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.15 E-value=0.052 Score=53.62 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=58.2
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC------CCCceeeEEEecCc-eEEc-ccc
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS------TNPHHEYIGLYPKG-FKFR-KRM 1138 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~------~~~~~e~i~v~p~g-f~~~-~~~ 1138 (1344)
..++.|.. -+++++|++|... +|. -.|-+-.+ ..||.|.|++... ..++|--|..+++| |++. ...
T Consensus 14 ~~~~WyhG~isR~eAe~lL~~~---~~~-G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~ 88 (125)
T 2dm0_A 14 EIYEWYHRNITRNQAEHLLRQE---SKE-GAFIVRDS-RHLGSYTISVFMGARRSTEAAIKHYQIKKNDSGQWYVAERHA 88 (125)
T ss_dssp TTSSSBCCSCCHHHHHHHHHHH---CST-TCBCEEEE-TTEEEEEEEEECCCSSSSSCCEEEEEEEECTTCCEESSSSCC
T ss_pred ccCCcccCCCCHHHHHHHHhhc---CCC-CEEEEEec-CCCCCEEEEEEeccccCCCCcEEEEEEEEcCCCCEEECCCCc
Confidence 34555542 3789999999654 222 34555556 6799999999974 24666667777777 6665 579
Q ss_pred cccHHHHHHHHHhhc
Q 039337 1139 FEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1139 ~~~~~~L~~~fK~~~ 1153 (1344)
|+||.+||++++++-
T Consensus 89 F~sl~eLV~~y~~~~ 103 (125)
T 2dm0_A 89 FQSIPELIWYHQHNA 103 (125)
T ss_dssp CSSHHHHHHHHTTCC
T ss_pred cCCHHHHHHHhhhCC
Confidence 999999999999774
No 162
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=95.11 E-value=0.027 Score=55.04 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=62.2
Q ss_pred hCcccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHHHHH
Q 039337 1069 SYRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRLVA 1147 (1344)
Q Consensus 1069 ~h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~L~~ 1147 (1344)
..+.|. .-+++++|++|. | --.|-+-.+...||.|.|++..+..+.|=-|......|.+.+..|+||.+||+
T Consensus 16 ~~~WyhG~isR~eAe~lL~------~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~g~y~~~~~~F~sl~eLV~ 88 (116)
T 2kk6_A 16 EQDWYHGAIPRIEAQELLK------K-QGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTGFSNIPQLID 88 (116)
T ss_dssp TCTTEEESCCHHHHHHTCC------S-TTCEEEEECTTCTTCEEEEEEETTEEEEEEEEEETTEEESSSCEESCHHHHHH
T ss_pred cCCCccCCCCHHHHHHHhc------c-CCcEEEEECCCCCCcEEEEEEECCeEEEEEEEecCCEEEECCCEeCCHHHHHH
Confidence 344454 237899999995 2 24577777888999999999998777777787767778888999999999999
Q ss_pred HHHhhc
Q 039337 1148 YFQRHI 1153 (1344)
Q Consensus 1148 ~fK~~~ 1153 (1344)
+++++-
T Consensus 89 ~y~~~~ 94 (116)
T 2kk6_A 89 HHYTTK 94 (116)
T ss_dssp HHHHTT
T ss_pred HHhhCC
Confidence 999763
No 163
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2 domain, signaling protein; 2.30A {Homo sapiens}
Probab=95.08 E-value=0.035 Score=55.09 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=59.8
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEe-cCc-eEEc----cccc
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLY-PKG-FKFR----KRMF 1139 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~-p~g-f~~~----~~~~ 1139 (1344)
+...+-|.. -+++++|++|..+. +| --.|-+-.+...||.|.|++..+..+.|--|.-+ .+| |+|. ...|
T Consensus 23 l~~~~WyhG~isR~eAe~lL~~~g--~~-~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~G~~~~~l~~~~~~F 99 (126)
T 2aug_A 23 HRSQPWFHHKISRDEAQRLIIQQG--LV-DGVFLVRDSQSNPKTFVLSMSHGQKIKHFQIIPVEDDGEMFHTLDDGHTRF 99 (126)
T ss_dssp GGGSTTEETTCCHHHHHHHHHTTT--CC-TTEEEEEECSSSSCCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSSCB
T ss_pred cccCCcccCCCCHHHHHHHHhccC--CC-CCEEEEeecCCCCCCEEEEEEcCCeEEEEEEEEECCCCeEEEEeCCCCCcc
Confidence 334555542 37999999995321 11 2356666688889999999999876777667655 367 6663 5799
Q ss_pred ccHHHHHHHHHhh
Q 039337 1140 EDIDRLVAYFQRH 1152 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~ 1152 (1344)
+||.+||++++++
T Consensus 100 ~SL~eLV~~y~~~ 112 (126)
T 2aug_A 100 TDLIQLVEFYQLN 112 (126)
T ss_dssp SSHHHHHHHHTTC
T ss_pred CCHHHHHHHHhhC
Confidence 9999999999975
No 164
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=95.08 E-value=0.005 Score=55.81 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=40.8
Q ss_pred ccccccccccccccchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHHHHhccCcE
Q 039337 654 LDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVNAVGFL 717 (1344)
Q Consensus 654 VdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kvf~n~a~Fl 717 (1344)
++.|++.. ..|..|+||||+.|+.|+++... .=.-.+.++|..++|||+++..+...|+
T Consensus 16 ~~~~~~~~-----~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 16 PRGSHMNT-----SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp -------C-----CGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HhHHHHHH-----HHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 66666665 78999999999999999998521 0011377889999999999988876553
No 165
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Mus musculus}
Probab=95.01 E-value=0.043 Score=55.25 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=61.9
Q ss_pred hhCccccc-C-CHHHHHHHHHHHHHh-CCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc----eEEc-cccc
Q 039337 1068 LSYRKFRK-G-SKAEVDELLRIEKAE-FPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG----FKFR-KRMF 1139 (1344)
Q Consensus 1068 ~~h~kf~~-g-~~~e~e~~L~~~~~~-np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g----f~~~-~~~~ 1139 (1344)
..++-|.. - +++++|++|..+... ...--.|-+=.+...||.|.|++..+..++|--|...++| |++. ...|
T Consensus 20 ~~~~WyhG~i~sR~eAe~lL~~~c~~~g~~~G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~gg~~~~~l~~~~~F 99 (138)
T 2dx0_A 20 FGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTF 99 (138)
T ss_dssp SCCTTBCTTCCCHHHHHHHHHHHHTTTTCCTTCEEEEECSSSTTCEEEEEEETTEEEEEEEEEEEETTEEEEESSTTSCB
T ss_pred cCCCcccCCCCCHHHHHHHHHhhccccCCCCCEEEEEeCCCCCCCeEEEEEECCeEEEEEEEEecCCCceEEEeCCCCcC
Confidence 34454542 3 589999999764211 1112246666677889999999998877878778777654 6665 7899
Q ss_pred ccHHHHHHHHHhhc
Q 039337 1140 EDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~~ 1153 (1344)
+||.+||+|++++.
T Consensus 100 ~sl~eLI~~y~~~~ 113 (138)
T 2dx0_A 100 NSIYALIQHYREAH 113 (138)
T ss_dssp SSHHHHHHHTTTSC
T ss_pred CCHHHHHHHHhhCC
Confidence 99999999999775
No 166
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Probab=94.98 E-value=0.087 Score=53.05 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=61.2
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEc-ccccccHHH
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFR-KRMFEDIDR 1144 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~-~~~~~~~~~ 1144 (1344)
..++-|.. -+++++|++|.. .|. -.|.+-.+...||.|.|++..+..++|--|. ..+| |.+. ...|+||.+
T Consensus 24 ~~~~WyhG~isR~eAe~lL~~----~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~-~~~g~~~l~~~~~F~sl~e 97 (138)
T 2crh_A 24 SVHLWYAGPMERAGAESILAN----RSD-GTFLVRQRVKDAAEFAISIKYNVEVKHIKIM-TAEGLYRITEKKAFRGLTE 97 (138)
T ss_dssp GGSSSBCCSCCHHHHHHHTTT----SCT-TEEEEECCSSTTCCCEEEEEETTEEEEEECE-EETTEEESSTTCCBSSHHH
T ss_pred CcCCcccCCCCHHHHHHHhcC----CCC-CEEEEEECCCCCCCEEEEEEECCeEEEEEEE-eCCCEEEECCCCccCCHHH
Confidence 45555642 378999999953 233 4566666778999999999998777777775 5666 6665 689999999
Q ss_pred HHHHHHhhc
Q 039337 1145 LVAYFQRHI 1153 (1344)
Q Consensus 1145 L~~~fK~~~ 1153 (1344)
||++++++.
T Consensus 98 LV~~y~~~~ 106 (138)
T 2crh_A 98 LVEFYQQNS 106 (138)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHhCc
Confidence 999999765
No 167
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=94.93 E-value=0.053 Score=65.61 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=63.1
Q ss_pred cccCCCc-----c-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCce
Q 039337 965 LIVHPCF-----Q-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKT 1038 (1344)
Q Consensus 965 vI~HP~F-----~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~ 1038 (1344)
+..+||| | +++-.+||++|.. +.|+++||.|...+...+++++..+.+ .|+.|.. +. .|
T Consensus 43 ~~~~~wy~~~w~hg~i~r~~ae~lL~~-~~G~FLvR~S~~~~g~~~Lsv~~~~~v-~H~~I~~---~g-----~~----- 107 (463)
T 3cxl_A 43 VENRPKYYGREFHGMISREAADQLLIV-AEGSYLIRESQRQPGTYTLALRFGSQT-RNFRLYY---DG-----KH----- 107 (463)
T ss_dssp CTTCCTTCCTTBCCSCCHHHHHHHHTT-STTEEEEEECSSSTTCEEEEEECSSSE-EEEECEE---SS-----SE-----
T ss_pred ccCCCCccccccccCCCHHHHHHHHcC-CCCeEEEeccCCCCCCEEEEEEECCEE-EEEEEec---CC-----eE-----
Confidence 4578888 4 6999999999976 469999999987777789999986655 6998865 22 13
Q ss_pred eeeCCccccchHHHHH-----HHHhhh
Q 039337 1039 LKIGEDTFEDLDEVVD-----RYIDPL 1060 (1344)
Q Consensus 1039 L~i~~~~y~DLDEii~-----~~V~pm 1060 (1344)
.+++..|.+|.|||. .|..+-
T Consensus 108 -~~~~~~F~sl~~Lv~dGl~~~~~~~~ 133 (463)
T 3cxl_A 108 -FVGEKRFESIHDLVTDGLITLYIETK 133 (463)
T ss_dssp -ESSSCCBSCHHHHHHHHHHHHHHHHH
T ss_pred -EECCCccCCHHHHHHHHHHhhhccCC
Confidence 345789999999999 777664
No 168
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2 d.93.1.1 d.93.1.1
Probab=94.89 E-value=0.061 Score=66.13 Aligned_cols=81 Identities=26% Similarity=0.429 Sum_probs=63.9
Q ss_pred ccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCc---------eeeEEEEeecCCCCcCcccccc
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDG---------VYAHKDIIEGGKDHKDIKSLVG 1034 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~---------v~~HidV~E~~K~~~~~~~~~s 1034 (1344)
..+|||+ +++-.+||++|... +.|+++||.|+..+...+++++..+. -..|+-|.-.+ . .|.
T Consensus 108 ~~~~w~~g~~~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~~v~H~~I~~~~--g-----~~~ 180 (525)
T 2shp_A 108 TSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQE--L-----KYD 180 (525)
T ss_dssp TTCTTBCCSCCHHHHHHHHHHTCCTTEEEEEECSSSTTCEEEEEEECC-----CCCCCEEEEEEEEEET--T-----EEE
T ss_pred ccceeecccCCHHHHHHHHhccCCCceEEEEecCCCCCCEEEEEEECCccccccccccceEEEEEEecC--C-----eEE
Confidence 4478888 89999999999877 78999999998777778999998773 56798886531 2 244
Q ss_pred cCceeeeCCccccchHHHHHHHHh
Q 039337 1035 IGKTLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1035 LG~~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
++ ++..|.+|+|||..|.+
T Consensus 181 l~-----~~~~F~sL~eLV~~y~~ 199 (525)
T 2shp_A 181 VG-----GGERFDSLTDLVEHYKK 199 (525)
T ss_dssp SS-----SSCCBSSHHHHHHHHHH
T ss_pred EC-----CCceeCcHHHHHHhhhc
Confidence 54 25789999999998865
No 169
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A
Probab=94.89 E-value=0.031 Score=54.36 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHH
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDR 1144 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~ 1144 (1344)
.+..++.|.. -+++++|++|. + --.|-+-.+...| .|.|++..+..++|--|.-....|.+.+..|+||.+
T Consensus 12 ~l~~~~WyhG~isR~eAe~lL~------~-~G~FLVR~S~~~~-~y~LSv~~~~~v~H~~I~~~~g~~~~~~~~F~sl~~ 83 (114)
T 1wqu_A 12 PLHEQLWYHGAIPRAEVAELLV------H-SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPL 83 (114)
T ss_dssp CGGGCTTEEESCCHHHHHTTCC------S-TTEEEEEECSSSC-CEEEEEEETTEEEEEECEECSSSEESSSCCBSSHHH
T ss_pred ccccCCcEeeCCCHHHHHHHhc------c-CCeEEEEEcCCCC-CEEEEEEECCEEEEEEEEecCCEEEECCCCCCCHHH
Confidence 3556666653 37999999994 1 2456666677888 999999998777777777777888899999999999
Q ss_pred HHHHHHhhc
Q 039337 1145 LVAYFQRHI 1153 (1344)
Q Consensus 1145 L~~~fK~~~ 1153 (1344)
||++++.+-
T Consensus 84 LV~~y~~~~ 92 (114)
T 1wqu_A 84 LIDHLLSTQ 92 (114)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHCC
Confidence 999999763
No 170
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=94.86 E-value=0.041 Score=62.49 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=62.4
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcc--cccccHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRK--RMFEDID 1143 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~--~~~~~~~ 1143 (1344)
+..++-|.. -++++++++|. ..|. -.|-+-.| ..||.|.|++..+..+.|--|..+++||+|.. ..|+||.
T Consensus 191 l~~~~WyhG~IsR~eAE~lL~----~~~~-GtFLVR~S-s~~g~y~LSv~~~~~V~H~rI~~~~~g~~~~~~~~~F~SL~ 264 (302)
T 2y3a_B 191 HEERTWYVGKINRTQAEEMLS----GKRD-GTFLIRES-SQRGCYACSVVVDGDTKHCVIYRTATGFGFAEPYNLYGSLK 264 (302)
T ss_dssp GSSTTTBCCSCCHHHHHHHHT----TSCT-TBEEBCCC-SSTTCEEEEEECSSSEEEEEEEEETTEEESBTTBCCCSSHH
T ss_pred ccCCCccCCCCCHHHHHHHhc----CCCC-CcEEEEec-cCCCceEEEEEeCCeeEEEEEEECCCceEEeCCCCCCCCHH
Confidence 344555542 37899999993 2332 34555556 78999999999988888888998999999975 6899999
Q ss_pred HHHHHHHhhc
Q 039337 1144 RLVAYFQRHI 1153 (1344)
Q Consensus 1144 ~L~~~fK~~~ 1153 (1344)
+||++++.+.
T Consensus 265 eLV~~Y~~~~ 274 (302)
T 2y3a_B 265 ELVLHYQHAS 274 (302)
T ss_dssp HHHHTTSSSC
T ss_pred HHHHHHHhCC
Confidence 9999999763
No 171
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=94.83 E-value=0.066 Score=67.09 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=63.6
Q ss_pred ccccccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCce
Q 039337 962 KERLIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKT 1038 (1344)
Q Consensus 962 ~~RvI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~ 1038 (1344)
..-.-.+|||| +++-.+||++|.. .+.|+++||.|+. ...++++++.. +-..|+-|...... .|.|+
T Consensus 155 ~~~~~~~~wyhg~i~r~~ae~~L~~~~~~~G~FLvR~s~~-~~~~~lsv~~~-~~v~h~~I~~~~~g------~~~~~-- 224 (613)
T 2ozo_A 155 TTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYG-KTVYHYLISQDKAG------KYCIP-- 224 (613)
T ss_dssp TSCTTTSTTBCTTCCHHHHHHHHSSSCCCTTCEEEEECSS-TTEEEEEEEET-TEEEEEEEEECTTC------CEECT--
T ss_pred ccccccCCccccCCCHHHHHHHHhhcCCCCceEEEEecCC-CCCEEEEEEEC-CeEEEEEEEECCCC------CEEEC--
Confidence 34567889999 8999999999985 4789999999965 67779999975 55669988753221 13333
Q ss_pred eeeCCccccchHHHHHHHH
Q 039337 1039 LKIGEDTFEDLDEVVDRYI 1057 (1344)
Q Consensus 1039 L~i~~~~y~DLDEii~~~V 1057 (1344)
++..|.+|.|||.-|-
T Consensus 225 ---~~~~F~sl~~Lv~~y~ 240 (613)
T 2ozo_A 225 ---EGTKFDTLWQLVEYLK 240 (613)
T ss_dssp ---TSCEESSHHHHHHHHH
T ss_pred ---CCCCcCCHHHHHHHHh
Confidence 3679999999998876
No 172
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=94.57 E-value=0.09 Score=55.18 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred HHHHHhhCcccccCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCC-CceeeEEEecCceEEccccccc
Q 039337 1063 HLKAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTN-PHHEYIGLYPKGFKFRKRMFED 1141 (1344)
Q Consensus 1063 ~v~~i~~h~kf~~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~-~~~e~i~v~p~gf~~~~~~~~~ 1141 (1344)
....++.|+.|++-+..++|++|.. . . --..+-+|.+ |++|.|+++.... ..|.-|.-..+=|...+..|.|
T Consensus 7 ~~~R~I~HP~F~n~s~~qAe~~L~~---~--~-G~~liRPSsk-~~~ltit~Kv~d~~~~Hi~I~E~~k~l~ig~~~fed 79 (178)
T 2xp1_A 7 TNPRFYKHPLFKNFNVTESENYLRS---S--T-DDFLIRKGSR-HGYCVLVIKFASDVFVHMKIEEHSEHYTCSNKHFED 79 (178)
T ss_dssp SCCGGGGSTTEECCCHHHHHHHHHH---S--S-CCEEEEECSS-TTEEEEEEEEETTEEEEEEEEECSSCEEETTEEESS
T ss_pred eeeeeccCCCcCCCCHHHHHHHHhc---C--C-CCEEEeecCC-CCcEEEEEEECCCcEEEEEEEECCCEEEECCcEECC
Confidence 3457899999999999999999976 1 2 4577888888 9999999996433 4565454444448888999999
Q ss_pred HHHHHHHHHh
Q 039337 1142 IDRLVAYFQR 1151 (1344)
Q Consensus 1142 ~~~L~~~fK~ 1151 (1344)
||+||..|-+
T Consensus 80 LDElI~~yv~ 89 (178)
T 2xp1_A 80 IDEVISVYVR 89 (178)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 173
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=94.50 E-value=0.041 Score=52.45 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=57.5
Q ss_pred Cccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec-----CCCCceeeEEEecC-ceEEc-cccccc
Q 039337 1070 YRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR-----STNPHHEYIGLYPK-GFKFR-KRMFED 1141 (1344)
Q Consensus 1070 h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~-----~~~~~~e~i~v~p~-gf~~~-~~~~~~ 1141 (1344)
++.|.. -+++++|++|... ...--.|-+-.+...||.|.|++.. +..++|--|..+++ +|++. ...|+|
T Consensus 4 ~~Wyhg~isR~~Ae~lL~~~---~~~~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s 80 (105)
T 1lkk_A 4 EPWFFKNLSRKDAERQLLAP---GNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPG 80 (105)
T ss_dssp CTTBCTTCCHHHHHHHHTST---TCCTTCEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTSCBSS
T ss_pred CceecCCCCHHHHHHHHHhc---CCCCceEEEEECCCCCCcEEEEEEEcccCCCCcEEEEEEEECCCCCEEECCCceeCC
Confidence 344442 3789999999432 1223357777788899999999996 33466666666555 57765 589999
Q ss_pred HHHHHHHHHhh
Q 039337 1142 IDRLVAYFQRH 1152 (1344)
Q Consensus 1142 ~~~L~~~fK~~ 1152 (1344)
|.+||++++++
T Consensus 81 l~~LI~~y~~~ 91 (105)
T 1lkk_A 81 LHELVRHYTNA 91 (105)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 99999999987
No 174
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=94.49 E-value=0.077 Score=51.62 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=57.7
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC------CCCceeeEE--EecCc-eEEc
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS------TNPHHEYIG--LYPKG-FKFR 1135 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~------~~~~~e~i~--v~p~g-f~~~ 1135 (1344)
.+..++-|.. -+++++|++|... ++ --.|.+-.+ ..||.|.|++... ..++|--|. ..++| |.+.
T Consensus 5 ~l~~~~Wyhg~isR~~Ae~lL~~~---~~-~G~FLVR~S-~~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~~~g~~~~~ 79 (118)
T 3s9k_A 5 NLETYEWYNKSISRDKAEKLLLDT---GK-EGAFMVRDS-RTPGTYTVSVFTKAIISENPCIKHYHIKETNDSPKRYYVA 79 (118)
T ss_dssp CGGGSTTBCTTCCHHHHHHHHHHH---CC-TTCEEEEEC-SSTTCEEEEEEECCSCSSSCEEEEEEEEECSCSSCCEEEE
T ss_pred ccccCceecCCCCHHHHHHHHHhc---CC-CCeEEEEee-CCCCCEEEEEEecccccCCCceEEEEEeEEECCCCCEEEC
Confidence 3455666653 3789999999653 22 234666668 8999999999975 334444442 24555 6665
Q ss_pred -ccccccHHHHHHHHHhhc
Q 039337 1136 -KRMFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1136 -~~~~~~~~~L~~~fK~~~ 1153 (1344)
...|+||.+||++++.+-
T Consensus 80 ~~~~F~sl~~LV~~y~~~~ 98 (118)
T 3s9k_A 80 EKYVFDSIPLLIQYHQYNG 98 (118)
T ss_dssp CSCCCSCHHHHHHHHHHCC
T ss_pred CCcccCCHHHHHHHheeCC
Confidence 569999999999999875
No 175
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=94.44 E-value=0.042 Score=53.85 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=60.4
Q ss_pred hCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec----CCCCceeeEEEecCceEEc-cccc--c
Q 039337 1069 SYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR----STNPHHEYIGLYPKGFKFR-KRMF--E 1140 (1344)
Q Consensus 1069 ~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~----~~~~~~e~i~v~p~gf~~~-~~~~--~ 1140 (1344)
.++-|.. -+++++|++|.... .--.|-+-.+...||.|.|++.. +..++|--|.-...+|.+. ...| +
T Consensus 20 ~~~WyhG~isR~eAe~lL~~~~----~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~v~H~~I~~~~g~~~i~~~~~F~~~ 95 (118)
T 2el8_A 20 ETPSCFLKVSRLEAQLLLERYP----ECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCT 95 (118)
T ss_dssp SSCTTCCCCCHHHHHHHHHHSS----TTCSBEEEECCSSSSSEEEEECCCBTTBCCCEEECBCCBTTBCCBSSSSCCCCS
T ss_pred CCCceecCCCHHHHHHHHhhCC----CCcEEEEeeCCCCCCceEEEEEEecCCCCcEEEEEEEEcCCEEEEeCCCeECCC
Confidence 4555643 37899999995432 22346666788899999999998 5556665565566677776 4789 9
Q ss_pred cHHHHHHHHHhhcC
Q 039337 1141 DIDRLVAYFQRHID 1154 (1344)
Q Consensus 1141 ~~~~L~~~fK~~~~ 1154 (1344)
||.+||++++++-.
T Consensus 96 sL~eLV~~y~~~~~ 109 (118)
T 2el8_A 96 SLDAVVNYFVSHTK 109 (118)
T ss_dssp SHHHHHHHHHHHSS
T ss_pred CHHHHHHHHhhCCC
Confidence 99999999998754
No 176
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=94.33 E-value=0.18 Score=63.45 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=63.7
Q ss_pred cccccccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCc
Q 039337 961 FKERLIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 961 ~~~RvI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
...+.-..|||+ +++-.+||++|... +-|.++||.|+. +...+++++..+. ..|+-|.-... . .|.++
T Consensus 159 ~~~~~~~~~Wy~g~isr~~ae~~L~~~~~~~G~FLvR~s~~-~g~y~lsv~~~~~-v~h~~i~~~~~-g-----~~~~~- 229 (635)
T 4fl3_A 159 ATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFLIRARDN-NGSYALCLLHEGK-VLHYRIDKDKT-G-----KLSIP- 229 (635)
T ss_dssp TTSCGGGSTTBCCSCCHHHHHHHHHSSSCCTTCEEEEESSS-SSCEEEEEEETTE-EEEEEEEECTT-S-----CEEST-
T ss_pred cccccccCCceeccCCHHHHHHHHHcCCCCCceEEEEecCC-CCCEEEEEEECCE-EEEEEEEECCC-C-----CEEeC-
Confidence 346777889998 89999999999874 489999999975 5667999998655 55888854322 1 13333
Q ss_pred eeeeCCccccchHHHHHHHHh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
++..|.+|.|||.-|-+
T Consensus 230 ----~~~~F~sl~~Lv~~y~~ 246 (635)
T 4fl3_A 230 ----EGKKFDTLWQLVEHYSY 246 (635)
T ss_dssp ----TCCCBSSHHHHHHHHTT
T ss_pred ----CCCccCCHHHHHHHhhh
Confidence 34799999999988744
No 177
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}
Probab=94.31 E-value=0.11 Score=51.42 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=59.1
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC------CCCceeeEEEecCc-eEEc-ccc
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS------TNPHHEYIGLYPKG-FKFR-KRM 1138 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~------~~~~~e~i~v~p~g-f~~~-~~~ 1138 (1344)
...+.|.. -+++++|++|... ++. -.|-+-.+ ..||.|.|++..+ ..+.|--|..+++| |.+. ...
T Consensus 9 ~~~~WyhG~isR~eAe~lL~~~---g~~-G~FLVR~S-s~~g~y~LSv~~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~ 83 (125)
T 2ge9_A 9 EMYEWYSKHMTRSQAEQLLKQE---GKE-GGFIVRDS-SKAGKYTVSVFAKSTGDPQGVIRHYVVCSTPQSQYYLAEKHL 83 (125)
T ss_dssp CCSSSEETTCCHHHHHHHHHHH---TCT-TEEEEEEC-SSSCCEEEEEEESSSSSTTCEEEEEECEEETTTEEESSTTSC
T ss_pred ccCCccccCCCHHHHHHHHhhc---CCC-ceEEEEec-CCCCCEEEEEEeccccCCCCeEEEEEEEEcCCCCEEECCCCc
Confidence 34455542 3789999999654 222 45666667 6899999999963 34556667777777 7775 579
Q ss_pred cccHHHHHHHHHhhc
Q 039337 1139 FEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1139 ~~~~~~L~~~fK~~~ 1153 (1344)
|+||.+||++++.+-
T Consensus 84 F~sl~eLV~~y~~~~ 98 (125)
T 2ge9_A 84 FSTIPELINYHQHNS 98 (125)
T ss_dssp BSSHHHHHHHHHCCC
T ss_pred CCCHHHHHHHhhhCC
Confidence 999999999999774
No 178
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=94.26 E-value=0.2 Score=53.99 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=62.9
Q ss_pred cccCCCcc-cCCHHHHHHHh-hcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 965 LIVHPCFQ-NVTADEAMKLL-SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L-~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
+..+|+|+ +++-.+|++.| ...+.|.+++|.|...+...+++++. .+..+|+.|....... +.+.
T Consensus 55 ~~~~~w~~g~isr~~ae~lL~~~~~~G~fLvR~S~~~~g~~~LSv~~-~~~v~h~~I~~~~~g~------------~~~~ 121 (217)
T 1gri_A 55 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKF-GNDVQHFKVLRDGAGK------------YFLW 121 (217)
T ss_dssp CCCCSSBCTTCCHHHHHHHHHTCSSTTCEEEEECSSSTTCEEEEEEE-TTEEEEEEEEECSSSC------------EESS
T ss_pred cccchhhcccCCHHHHHHHHhccCCCceEEEEccCCCCCCEEEEEEE-CCEEEEEEEEEcCCCC------------EEEe
Confidence 34567765 68889999999 66789999999998888888999986 4567899988654221 3344
Q ss_pred CccccchHHHHHHHHhh
Q 039337 1043 EDTFEDLDEVVDRYIDP 1059 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V~p 1059 (1344)
...|.+|.|||..|-..
T Consensus 122 ~~~f~sl~eLv~~~~~~ 138 (217)
T 1gri_A 122 VVKFNSLNELVDYHRST 138 (217)
T ss_dssp SCEESSHHHHHHHHHHS
T ss_pred eeEcCCHHHHHHhhhcc
Confidence 68999999999877543
No 179
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=93.91 E-value=0.027 Score=53.88 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=56.3
Q ss_pred Ccccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec-----CCCCceeeEEEecC-ceEEc-cccccc
Q 039337 1070 YRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR-----STNPHHEYIGLYPK-GFKFR-KRMFED 1141 (1344)
Q Consensus 1070 h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~-----~~~~~~e~i~v~p~-gf~~~-~~~~~~ 1141 (1344)
++-|. .-+++++|++|.... +| --.|-+-.+...||.|.|++.. +..++|--|..+++ +|++. ...|+|
T Consensus 5 ~~Wyhg~isR~~Ae~lL~~~g--~~-~G~FLVR~S~~~~g~~~LSv~~~~~~~~~~v~H~~I~~~~~g~~~l~~~~~F~s 81 (106)
T 1aot_F 5 EEWYFGKLGRKDAERQLLSFG--NP-RGTFLIRESETTKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFET 81 (106)
T ss_dssp SSSCCBSCCHHHHHHHHHTTT--CC-TTEECCBCBSSSSSBBCCEEECCBTTTBCCEEECCBEEETTTEEEEETTEEESS
T ss_pred CccCCCCCCHHHHHHHHhhCC--CC-CcEEEEEeCCCCCCCEEEEEEecccCCCCcEEEEEEEEeCCCCEEECCCCccCC
Confidence 44454 237899999995321 11 2245555566789999999985 34566666776654 47775 689999
Q ss_pred HHHHHHHHHhh
Q 039337 1142 IDRLVAYFQRH 1152 (1344)
Q Consensus 1142 ~~~L~~~fK~~ 1152 (1344)
|.+||++++++
T Consensus 82 l~~LV~~y~~~ 92 (106)
T 1aot_F 82 LQQLVQHYSER 92 (106)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhccC
Confidence 99999999977
No 180
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=93.89 E-value=0.0084 Score=55.73 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=47.8
Q ss_pred ccccccccccccccchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHHHHhccCcEEE
Q 039337 654 LDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVNAVGFLRV 719 (1344)
Q Consensus 654 VdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kvf~n~a~FlrI 719 (1344)
-|.|.+.. ..|..|+|+|++.|+.|+++... .=.-.+.++|..++|||+++..+...|+.-
T Consensus 11 ~~~~~~~~-----~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 11 QDFVSRVT-----ECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHHHHH-----HHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred ccHHHHHH-----HHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 46677766 68999999999999999987521 111246788999999999999999888753
No 181
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}
Probab=93.85 E-value=0.1 Score=54.49 Aligned_cols=83 Identities=22% Similarity=0.222 Sum_probs=61.0
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCC---CceeeEEE---ecCc-----eEEc
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTN---PHHEYIGL---YPKG-----FKFR 1135 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~---~~~e~i~v---~p~g-----f~~~ 1135 (1344)
-+++-|.. -+++++|++|... .+|. -.|-+-.+ ..||.|.|++.-+.+ ++|=-|.- .++| |.+.
T Consensus 10 ~~~~Wyhg~isR~~Ae~lL~~~--~~~~-G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~~~~~~~ 85 (174)
T 3qwx_X 10 EWRSFYFPGMSREEAHKLLGEP--QVSI-GTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIA 85 (174)
T ss_dssp GGGGGEETTCCHHHHHHHHHST--TCCT-TEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTSSSCCCEEET
T ss_pred ccCCCccCCCCHHHHHHHHhcc--CCCC-CeEEEEec-CCCCCEEEEEEECCCCCceEEEEEEeccCCCCCcccceEEEC
Confidence 34555543 2799999999532 1222 34666668 999999999998766 66666655 3454 8888
Q ss_pred ccccccHHHHHHHHHhhcC
Q 039337 1136 KRMFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1136 ~~~~~~~~~L~~~fK~~~~ 1154 (1344)
...|+|+.+|+++++.+..
T Consensus 86 ~~~F~sl~eLv~~y~~~~~ 104 (174)
T 3qwx_X 86 NQSFPDIPALLNHFKMRVL 104 (174)
T ss_dssp TEEESSHHHHHHHTTSSCS
T ss_pred CeecCcHHHHhhhhhcCcc
Confidence 9999999999999997764
No 182
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=93.42 E-value=0.022 Score=60.57 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=42.8
Q ss_pred cchhhccCCCHHHHHHHHHHHHhcCC-----CCCHHHHhhccCCCHHHHHhccCcEE
Q 039337 667 APLQFISGLGPRKAASLQRSLVRAGA-----IFTRKDFVTAHGLGKKVFVNAVGFLR 718 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~~g~-----~~sr~~L~~v~~iG~kvf~n~a~Flr 718 (1344)
..|..|+||||++|.+|+++.....- -.+.++|.+++|||+|+-++..-.|+
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 47888999999999999999744222 25789999999999999999876654
No 183
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=93.35 E-value=0.14 Score=52.72 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=46.1
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEE
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVL 527 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaI 527 (1344)
+|||| |||-+.|=+++|+.+|.-+.++....+... .. ....|...-.+.|.++|.+|+||+++|
T Consensus 2 ~ILGI--DPGl~~tG~gvi~~~g~~~~~v~~G~i~t~-~~-~~~~Rl~~i~~~l~~~i~~~~Pd~vai 65 (158)
T 1hjr_A 2 IILGI--DPGSRVTGYGVIRQVGRQLSYLGSGCIRTK-VD-DLPSRLKLIYAGVTEIITQFQPDYFAI 65 (158)
T ss_dssp EEEEE--ECCSSEEEEEEEEEETTEEEEEEEEEEECC-CS-CHHHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEEE--ccCCCCeeEEEEEecCCeEEEEEeeEEECC-CC-CHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 79999 999877778999988886655544554332 11 123344555567899999999999999
No 184
>3maz_A Signal-transducing adaptor protein 1; modular domain, phosphotyrosine, specificity, cytoplasm, phosphoprotein, SH2 domain, signaling protein; HET: PTR; 1.90A {Homo sapiens}
Probab=93.27 E-value=0.21 Score=49.19 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=58.2
Q ss_pred cccCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec---CCCCceeeEEEecCceEEc---ccccccHHHHH
Q 039337 1073 FRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR---STNPHHEYIGLYPKGFKFR---KRMFEDIDRLV 1146 (1344)
Q Consensus 1073 f~~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~---~~~~~~e~i~v~p~gf~~~---~~~~~~~~~L~ 1146 (1344)
|.+-++.+.|++|. .+|..-.+.+-.+...| .|.|+..- ...+.|=-|+-...+|++. ...|+||.+||
T Consensus 19 f~~isR~eAE~lL~----~~~~~GaFLVR~Se~~~-~ySLSVR~~~~~~~VKHYkI~~~~G~y~I~~~~~~~F~SL~eLV 93 (125)
T 3maz_A 19 FYTVSRKEATEMLQ----KNPSLGNMILRPGSDSR-NYSITIRQEIDIPRIKHYKVMSVGQNYTIELEKPVTLPNLFSVI 93 (125)
T ss_dssp BCCCCHHHHHHHHH----HCGGGCSEEEEECTTSS-SEEEEEEECSSSCEEEEEEEEEETTEEEECSSSCEEESSHHHHH
T ss_pred cCCCCHHHHHHHHh----ccCCCCcEEEEeCCCCC-CEEEEEEecCCCCCEeeeEEEEeCCEEEEecCCCcCcCCHHHHH
Confidence 34558999998883 25556667777776666 89999986 3456677777777788887 35799999999
Q ss_pred HHHHhhcCC
Q 039337 1147 AYFQRHIDD 1155 (1344)
Q Consensus 1147 ~~fK~~~~d 1155 (1344)
+||+++-.-
T Consensus 94 ~yY~~~adG 102 (125)
T 3maz_A 94 DYFVKETRG 102 (125)
T ss_dssp HHHHHHTTT
T ss_pred HHHHhCCCc
Confidence 999977543
No 185
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=93.26 E-value=0.015 Score=54.23 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=47.0
Q ss_pred cccccccccccccccchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHHHHhccCcE
Q 039337 653 GLDINLAIHREWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVNAVGFL 717 (1344)
Q Consensus 653 GVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kvf~n~a~Fl 717 (1344)
-.|.|.+.. ..|..|+|||++.|+.|+++... .=.-.+.++|..++|||+++..+...|+
T Consensus 23 ~~~~~~~~~-----~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 23 EQDFVSRVT-----ECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHH-----HHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred cCCHHHHHH-----HHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 355666666 68999999999999999998621 1123478899999999999998887776
No 186
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.21 E-value=0.051 Score=62.87 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=41.3
Q ss_pred chhhccCCCHHHHHHHHHHHHhcCCCCCHHHH----------hhccCCCHHHHHhcc
Q 039337 668 PLQFISGLGPRKAASLQRSLVRAGAIFTRKDF----------VTAHGLGKKVFVNAV 714 (1344)
Q Consensus 668 ~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L----------~~v~~iG~kvf~n~a 714 (1344)
.|+.|||||++.|+.|.++++ +|.+...++| .+|+|||+|+....-
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~-tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILE-SGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH-SSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHH-cCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHH
Confidence 489999999999999999996 8999999887 589999999988763
No 187
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=93.13 E-value=0.23 Score=60.31 Aligned_cols=81 Identities=26% Similarity=0.326 Sum_probs=62.3
Q ss_pred cccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeCC
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIGE 1043 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~~ 1043 (1344)
+-.+|||| +++-.+|+++|.....|+++||.|...+..++++++.. +-..|+.|...+.. .-+....
T Consensus 102 le~~~wyhg~i~r~~ae~ll~~~~~G~fLvR~s~~~~~~~~lsv~~~-~~v~h~~I~~~~~g-----------~~~~~~~ 169 (495)
T 1opk_A 102 LEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYE-GRVYHYRINTASDG-----------KLYVSSE 169 (495)
T ss_dssp GGGSTTEEEECCHHHHHHHGGGCCTTEEEEEECSSSTTCEEEEEEET-TEEEEEECEECTTS-----------CEESSTT
T ss_pred ccchhhhccCCCHHHHHHHhhCCCCceEEEEeCCCCCCceEEEEeeC-CeEEEEEEEecCCC-----------ceEeccC
Confidence 44689998 89999999999988899999999987777889999874 55678888653221 1112235
Q ss_pred ccccchHHHHHHHH
Q 039337 1044 DTFEDLDEVVDRYI 1057 (1344)
Q Consensus 1044 ~~y~DLDEii~~~V 1057 (1344)
..|.+|.|++..|.
T Consensus 170 ~~F~sl~eLv~~~~ 183 (495)
T 1opk_A 170 SRFNTLAELVHHHS 183 (495)
T ss_dssp SCBSSHHHHHHHHT
T ss_pred ccchhHHHHhhhhc
Confidence 68999999998775
No 188
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=93.01 E-value=0.18 Score=52.22 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=46.2
Q ss_pred eEeEeecCCCCCceEEEEECCCCC---EEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGE---VVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGA 529 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~---vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~ 529 (1344)
||||| |||-..|=+++||..|. -+..+....+...+.. ...+|-..-.+.|.++|.+|+||.|||-.
T Consensus 2 rILGI--DPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~-~~~~RL~~I~~~l~~~i~~~~Pd~vaiE~ 71 (166)
T 4ep4_A 2 VVAGI--DPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQE-PAKERVGRIHARVLEVLHRFRPEAVAVEE 71 (166)
T ss_dssp EEEEE--ECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTS-CHHHHHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred EEEEE--ccccCceEEEEEEecCCccceEEEEEeCeEECCCCC-CHHHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 79999 99987777899998887 4444333444332111 12334455567799999999999999953
No 189
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=92.94 E-value=0.13 Score=48.95 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=44.1
Q ss_pred ccCCeEEEEEEEEE---ecccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeC
Q 039337 844 LAEGRVVQATVRRV---QGQRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQK 907 (1344)
Q Consensus 844 l~~G~iV~g~V~~V---~~~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~ 907 (1344)
...++.++|+|+.. ..|| |+..+. +.+.|+|+|.|++..+ +...+++||.|+..|..+..
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~---~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA---VRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC---CCCCCCTTCEEEEEEEECCS
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc---cccCCCCCCEEEEEEEEeCC
Confidence 34677889999988 5688 777654 5899999999987622 12468999999999998864
No 190
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=92.77 E-value=0.034 Score=60.00 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=40.4
Q ss_pred ccchhhccCCCHHHHHHHHHHHHhcC-----CCCCHHHHhhccCCCHHHHHhccC
Q 039337 666 FAPLQFISGLGPRKAASLQRSLVRAG-----AIFTRKDFVTAHGLGKKVFVNAVG 715 (1344)
Q Consensus 666 ~~~Lq~v~GlGprkA~~ii~~r~~~g-----~~~sr~~L~~v~~iG~kvf~n~a~ 715 (1344)
+..|..|+||||+.|.+|++.+.... .-.+.+.|.+++|||+|+.++..-
T Consensus 87 f~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 87 FLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 35788899999999999999874322 135788899999999999988763
No 191
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*
Probab=92.70 E-value=0.14 Score=53.37 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=58.4
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec-----CCCCceeeEEEecCc-eEEcc-cc
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR-----STNPHHEYIGLYPKG-FKFRK-RM 1138 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~-----~~~~~~e~i~v~p~g-f~~~~-~~ 1138 (1344)
+..++-|.. -+++++|++|.... +| --.|.+-.+...||.|.|++.- +..++|--|.-+++| |++.. ..
T Consensus 71 l~~~~w~~g~isr~~ae~lL~~~~--~~-~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~v~H~~I~~~~~g~~~~~~~~~ 147 (175)
T 4d8k_A 71 LEPEPWFFKNLSRKDAERQLLAPG--NT-HGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRIT 147 (175)
T ss_dssp STTCTTBCSSCCHHHHHHHHHSTT--CC-TTCEEEEECSSSTTCEEEEEEEECTTSCEEEEEEEEEECSSSCEESSTTSE
T ss_pred ccccceecCcccHHHHHHHHhcCC--CC-CCEEEEEECCCCCCeEEEEEEeCcccCCCceEEEEEEECCCCCEEECCCCc
Confidence 344555543 37899999995321 22 2346666677899999999986 334556666666666 55553 79
Q ss_pred cccHHHHHHHHHhhc
Q 039337 1139 FEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1139 ~~~~~~L~~~fK~~~ 1153 (1344)
|+||.+||++++++-
T Consensus 148 F~sl~~LV~~y~~~~ 162 (175)
T 4d8k_A 148 FPGLHELVRHYTNAS 162 (175)
T ss_dssp ESSHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHhhCC
Confidence 999999999999863
No 192
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.37 E-value=0.13 Score=51.03 Aligned_cols=71 Identities=23% Similarity=0.187 Sum_probs=50.8
Q ss_pred ccCCCcccCCHHHHHHHhhcC-CC-CcEEEecCCCCCCceEEEEEEeC-ceeeEEEEeecCCCCcCcccccccCceeee-
Q 039337 966 IVHPCFQNVTADEAMKLLSAK-EP-GESIIRPSSRGPSYLTLTLKVYD-GVYAHKDIIEGGKDHKDIKSLVGIGKTLKI- 1041 (1344)
Q Consensus 966 I~HP~F~n~~~~qAe~~L~~~-~~-Gd~viRPSSkG~d~L~vTwKv~d-~v~~HidV~E~~K~~~~~~~~~sLG~~L~i- 1041 (1344)
..+|||| .+|... +. |.++||.|+ .+...+++++..+ +-..|+-|...+. .+.|
T Consensus 28 ~~~~Wyh--------~Ll~~g~~~dG~FLVR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~~-------------~~~i~ 85 (126)
T 2cr4_A 28 EVERLFK--------ATSPRGEPQDGLYCIRNSS-TKSGKVLVVWDETSNKVRNYRIFEKDS-------------KFYLE 85 (126)
T ss_dssp HHHHHHH--------HHSTTSCCCTTCEEEEECS-STTCEEEEEEETTTTEECCEECEEETT-------------EEESS
T ss_pred ccCCCHH--------HHhhCCCCCCCeEEEEecC-CCCCEEEEEEeCCCCCEEEEEEEECCC-------------eEEEc
Confidence 4578888 334333 33 999999999 5677799998863 5567999976432 1233
Q ss_pred CCccccchHHHHHHHHh
Q 039337 1042 GEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~ 1058 (1344)
++..|.+|.|||.-|-+
T Consensus 86 ~~~~F~sL~eLV~hY~~ 102 (126)
T 2cr4_A 86 GEVLFVSVGSMVEHYHT 102 (126)
T ss_dssp SSCEESSHHHHHHHHTT
T ss_pred CCccCCCHHHHHHHHhh
Confidence 35799999999998864
No 193
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=92.31 E-value=0.047 Score=48.53 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=41.1
Q ss_pred cchhhccCCCHHHHHHHHHHHHh-cC-CCCCHHHHhhccCCCHHHHHhccCcEE
Q 039337 667 APLQFISGLGPRKAASLQRSLVR-AG-AIFTRKDFVTAHGLGKKVFVNAVGFLR 718 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~-~g-~~~sr~~L~~v~~iG~kvf~n~a~Flr 718 (1344)
..|..|+|+|+..|+.|+++... .. .-.+.++|..++|||+++..+...++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997621 01 123678899999999999988877653
No 194
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}
Probab=92.27 E-value=0.26 Score=61.50 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=61.2
Q ss_pred ccCCCcc-cCCHHHHHHHh-hcCCCCcEEEecCCCCCCceEEEEEEeCc--------eeeEEEEeecCCCCcCccccccc
Q 039337 966 IVHPCFQ-NVTADEAMKLL-SAKEPGESIIRPSSRGPSYLTLTLKVYDG--------VYAHKDIIEGGKDHKDIKSLVGI 1035 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L-~~~~~Gd~viRPSSkG~d~L~vTwKv~d~--------v~~HidV~E~~K~~~~~~~~~sL 1035 (1344)
..+|||+ +++-.+||++| +..+.|.++||.|...+...+++++..+. -..|+-|.. +++ .|.+
T Consensus 106 ~~~~Wy~g~~~r~eAe~lL~~~~~~G~FLVR~S~~~~g~y~LSv~~~~~~~~~~~~~~v~H~~I~~---~~~----~~~~ 178 (595)
T 3ps5_A 106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMC---EGG----RYTV 178 (595)
T ss_dssp CCSTTEEESCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEESSSTTSCEEEEEEEEBC---GGG----CBBS
T ss_pred cccccccccCCHHHHHHHHhccCCCceEEEEecCCCCCcEEEEEEECCccccccCCCceEEEEEEE---eCC----EEEE
Confidence 4677776 78889999999 55567999999997667777999988773 466888854 221 2444
Q ss_pred CceeeeCCccccchHHHHHHHHh
Q 039337 1036 GKTLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1036 G~~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
+ +...|.+|.|||.-|-+
T Consensus 179 ~-----~~~~F~sl~~LV~~y~~ 196 (595)
T 3ps5_A 179 G-----GLETFDSLTDLVEHFKK 196 (595)
T ss_dssp S-----SSCCBSSHHHHHHHHHH
T ss_pred c-----CCcCCCCHHHHHHHHhc
Confidence 4 24799999999999865
No 195
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.21 E-value=0.043 Score=58.91 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=42.5
Q ss_pred cchhhccCCCHHHHHHHHHHHHhcC-----CCCCHHHHhhccCCCHHHHHhccCcEE
Q 039337 667 APLQFISGLGPRKAASLQRSLVRAG-----AIFTRKDFVTAHGLGKKVFVNAVGFLR 718 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~~g-----~~~sr~~L~~v~~iG~kvf~n~a~Flr 718 (1344)
..|..|+||||++|.+|+++..... .-.+.++|.+++|||+|+-++..-.|+
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk 129 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMK 129 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHH
Confidence 4788899999999999999874322 135788999999999999999876664
No 196
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=92.21 E-value=0.026 Score=62.12 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred cccccccccccccccccchhhccCCCHHHHHHHHHH-HHhcC--CCCCHHHHhhccCCCHHHHHhccCcEEE
Q 039337 651 QVGLDINLAIHREWQFAPLQFISGLGPRKAASLQRS-LVRAG--AIFTRKDFVTAHGLGKKVFVNAVGFLRV 719 (1344)
Q Consensus 651 ~vGVdiN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~-r~~~g--~~~sr~~L~~v~~iG~kvf~n~a~FlrI 719 (1344)
.+-|| ++|.. ..|..|+||||++|..|+++ ...-. .-.+.++|..++|||+++.++...+|.-
T Consensus 5 ~~~~~-~~a~~-----~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 5 EEDVE-AEEEY-----TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hhhhh-cccch-----hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 33444 25555 68999999999999999987 22111 1123455668999999999999777643
No 197
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor, growth regulation, signal transduction, SH2 domain, nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Probab=92.01 E-value=0.13 Score=54.49 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEccc-----
Q 039337 1064 LKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKR----- 1137 (1344)
Q Consensus 1064 v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~----- 1137 (1344)
+..+.+++-|-. -+++++|++|. ..|. -.|-+--|...++.|.|++..+..+.|--|.-...+|.|...
T Consensus 28 ~~~l~~~~WYhG~isR~eAE~lL~----~~~d-GtFLVR~S~~~~~~lsLSvr~~~~v~H~rI~~~~g~f~l~~~~~~~~ 102 (187)
T 2izv_A 28 LLQINNNPCYWGVMDKYAAEALLE----GKPE-GTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVF 102 (187)
T ss_dssp HHHHHHCTTEEEECCHHHHHHHHT----TCCT-TEEEEEECSSTTCSEEEEEEETTEEEEEECEEETTEEESCTTCTTSC
T ss_pred hhhcccCCccccCCCHHHHHHHhc----CCCC-CcEEEEECCCCCceEEEEEeeCCeEEEEEEEECCCEEEEeccCCCcc
Confidence 345677777753 47999999994 2343 345554566677789999998777777778778888999853
Q ss_pred ccccHHHHHHHHHhhcCC
Q 039337 1138 MFEDIDRLVAYFQRHIDD 1155 (1344)
Q Consensus 1138 ~~~~~~~L~~~fK~~~~d 1155 (1344)
.|+||.+||++++++-..
T Consensus 103 ~F~SL~eLV~hY~~~~~~ 120 (187)
T 2izv_A 103 HSPDITGLLEHYKDPSAC 120 (187)
T ss_dssp CBSSHHHHHHHTCCGGGC
T ss_pred ccCCHHHHHHHHHhcccc
Confidence 799999999999976543
No 198
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=91.76 E-value=0.42 Score=57.22 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=61.6
Q ss_pred cccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEe----CceeeEEEEeecCCCCcCcccccccCc
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVY----DGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~----d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
+..+|+|+ +++-.+|+++|.+. +.|+++||.|...+...+++++.. .+-..|+.|....... |.+
T Consensus 62 le~~~w~~g~~~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~------~~~-- 133 (452)
T 1fmk_A 62 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGG------FYI-- 133 (452)
T ss_dssp GGGSTTEEETCCHHHHHHHHTCTTSCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSC------EES--
T ss_pred ccccccccCCccHHHHHHHhccCCCCCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCCC------EEE--
Confidence 44567765 88899999999765 679999999987777789998873 3467899888643211 222
Q ss_pred eeeeCCccccchHHHHHHHHh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
..+..|.+|.++|..|-.
T Consensus 134 ---~~~~~F~Sl~~Li~~y~~ 151 (452)
T 1fmk_A 134 ---TSRTQFNSLQQLVAYYSK 151 (452)
T ss_dssp ---STTSEESSHHHHHHHHTT
T ss_pred ---ecCcccCCHHHHHHHhhh
Confidence 235789999999988754
No 199
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=91.72 E-value=0.44 Score=58.50 Aligned_cols=83 Identities=19% Similarity=0.259 Sum_probs=61.1
Q ss_pred cccCCCcc-cCCHHHHHHHhhcC--CCCcEEEecCCCCCCceEEEEEEeC----ceeeEEEEeecCCCCcCcccccccCc
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSAK--EPGESIIRPSSRGPSYLTLTLKVYD----GVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~~--~~Gd~viRPSSkG~d~L~vTwKv~d----~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
+..+|||| +++-.+|+++|.+. +.|+++||.|......++|+++..+ +-..|+.|.... + |.
T Consensus 145 l~~~~wy~g~i~r~~ae~~L~~~~~~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~--~---------g~ 213 (535)
T 2h8h_A 145 IQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLD--S---------GG 213 (535)
T ss_dssp GGGSTTBCCSCCHHHHHHHHTCTTCCTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-C--C---------SC
T ss_pred ccccceeccccCHHHHHHHhccCCCCCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcC--C---------Cc
Confidence 34567665 89999999999875 6799999999877777889888633 467898887642 2 11
Q ss_pred eeeeCCccccchHHHHHHHHh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
-....+..|.+|+|||..|-+
T Consensus 214 ~~i~~~~~F~SL~eLv~~y~~ 234 (535)
T 2h8h_A 214 FYITSRTQFNSLQQLVAYYSK 234 (535)
T ss_dssp EEEETTEEESSHHHHHHHHHH
T ss_pred EEeeccccccChHHhheeecc
Confidence 222345789999999988754
No 200
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Probab=91.59 E-value=0.46 Score=58.47 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=60.2
Q ss_pred ccCCCcc-cCCHHHHHHHhhcC-CCCcEEEecCCCCCCceEEEEEEeCc--------eeeEEEEeecCCCCcCccccccc
Q 039337 966 IVHPCFQ-NVTADEAMKLLSAK-EPGESIIRPSSRGPSYLTLTLKVYDG--------VYAHKDIIEGGKDHKDIKSLVGI 1035 (1344)
Q Consensus 966 I~HP~F~-n~~~~qAe~~L~~~-~~Gd~viRPSSkG~d~L~vTwKv~d~--------v~~HidV~E~~K~~~~~~~~~sL 1035 (1344)
-.+|||+ +++-.+||++|... +.|.++||.|+..+...+++++..+. ...|+-|.-. .. .|.|
T Consensus 106 ~~~~w~~g~i~r~~Ae~lL~~~~~~G~FLVR~S~~~~g~y~Lsv~~~~~~~~~~~~~~v~h~~I~~~--~g-----~~~l 178 (532)
T 2b3o_A 106 TSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGPGSPLRVTHIKVMCE--GG-----RYTV 178 (532)
T ss_dssp GGCTTBCTTCCHHHHHHHHHHHCCTTEEEEEECSSSTTCEEEEEEEEEEC----CCEEEEEEEEBCC--TT-----SBBS
T ss_pred ccccccccccchHHHHHHHhcCCCCceEEEecCCCCCCceEEEEEecCccccccCCCceEEEEEEEc--CC-----ceee
Confidence 3568886 59999999999653 56999999997666667899988762 5668877542 11 2555
Q ss_pred CceeeeCCccccchHHHHHHHHh
Q 039337 1036 GKTLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1036 G~~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
+ .+..|.+|+|||..|.+
T Consensus 179 ~-----~~~~F~sl~eLV~~y~~ 196 (532)
T 2b3o_A 179 G-----GLETFDSLTDLVEHFKK 196 (532)
T ss_dssp S-----SSCCBSSHHHHHHHHHH
T ss_pred C-----CCcccCcHHHHHhhccc
Confidence 4 25799999999988754
No 201
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*
Probab=90.13 E-value=0.046 Score=62.43 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=63.0
Q ss_pred HHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCc-eEEcccccccH
Q 039337 1065 KAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKG-FKFRKRMFEDI 1142 (1344)
Q Consensus 1065 ~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~g-f~~~~~~~~~~ 1142 (1344)
+.+-.++-|.. -+++++|++|... + --.|-+-.+...||.|.|++..+..++|--|.-+.+| |.+.++.|+||
T Consensus 7 d~~~~~~Wyhg~isR~~Ae~lL~~~----~-~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl 81 (303)
T 2lqn_A 7 DSSDRSAWYMGPVSRQEAQTRLQGQ----R-HGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHL 81 (303)
Confidence 34445555642 2689999999653 1 1235555577899999999998877877777765555 77889999999
Q ss_pred HHHHHHHHhhcC
Q 039337 1143 DRLVAYFQRHID 1154 (1344)
Q Consensus 1143 ~~L~~~fK~~~~ 1154 (1344)
.+||+|++++..
T Consensus 82 ~~Lv~~y~~~~~ 93 (303)
T 2lqn_A 82 PALLEFYKIHYL 93 (303)
Confidence 999999997765
No 202
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=89.77 E-value=0.86 Score=54.51 Aligned_cols=81 Identities=30% Similarity=0.468 Sum_probs=59.9
Q ss_pred ccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeeeC
Q 039337 964 RLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 964 RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i~ 1042 (1344)
.+..+|||| +++-.+|++.|.+...|+++||.|..-....+++++. ++-..|+.|...+ + .+.+. .
T Consensus 76 ~~~~~~wyhg~i~r~~ae~~L~~~~~G~FlvR~S~~~~g~~~Lsv~~-~~~v~H~~I~~~~--~-----~~~i~-----~ 142 (450)
T 1k9a_A 76 KLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGDYTLCVSC-EGKVEHYRIMYHA--S-----KLSID-----E 142 (450)
T ss_dssp TEESCTTBCTTCCHHHHHHHTCSCCTTEEEEEECSSSTTSEEEEEEC-SSSEEEEEEEEET--T-----EEESS-----S
T ss_pred ccccccccccCcCHHHhhhhhccCCCceEEEEecCCCCCceEEEEEe-CCeeeEEEEEecC--C-----ceEec-----c
Confidence 346678887 7888999999988778999999997766677888865 4556788884321 1 12221 3
Q ss_pred CccccchHHHHHHHH
Q 039337 1043 EDTFEDLDEVVDRYI 1057 (1344)
Q Consensus 1043 ~~~y~DLDEii~~~V 1057 (1344)
...|+.|.+++..|.
T Consensus 143 ~~~F~sl~eLv~~y~ 157 (450)
T 1k9a_A 143 EVYFENLMQLVEHYT 157 (450)
T ss_dssp SSCBSSHHHHHHHHH
T ss_pred ccccccHHHHHhhhc
Confidence 468999999998875
No 203
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.63 E-value=2.5 Score=48.39 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=15.0
Q ss_pred cccchHHHHHHHHhhhHHHHHHHhh
Q 039337 1045 TFEDLDEVVDRYIDPLVSHLKAMLS 1069 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~pm~~~v~~i~~ 1069 (1344)
.|.-+-+-+.+||.-|..+|++-+.
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444455556666667666666555
No 204
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=88.81 E-value=0.75 Score=52.44 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=62.3
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCC---CceeeEEE-ec-------CceE
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTN---PHHEYIGL-YP-------KGFK 1133 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~---~~~e~i~v-~p-------~gf~ 1133 (1344)
.+..++-|.. -+++++|++|.... ++. -.|-+=-+ ..||.|.|++.-+.+ ++|=-|.- .. ..|+
T Consensus 37 ~l~~~~Wyhg~i~R~~Ae~lL~~~~--~~~-G~FLVR~S-~~~g~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~ 112 (308)
T 3qwy_A 37 PFEWRSFYFPGMSREEAHKLLGEPQ--VSI-GTFLMRDS-SRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVK 112 (308)
T ss_dssp GGGGGGGEETTCCHHHHHHHHHSTT--CCT-TEEEEEEC-SSTTCEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEE
T ss_pred cccccccccCCCCHHHHHHHHhccC--CCC-ceEEEEcc-CCCCCEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEE
Confidence 4556676653 37999999995321 222 24444457 999999999999866 65655654 43 4688
Q ss_pred EcccccccHHHHHHHHHhhcCC
Q 039337 1134 FRKRMFEDIDRLVAYFQRHIDD 1155 (1344)
Q Consensus 1134 ~~~~~~~~~~~L~~~fK~~~~d 1155 (1344)
+....|+++.+|+.+++.+...
T Consensus 113 ~~~~~F~Sl~eLv~~y~~~~~~ 134 (308)
T 3qwy_A 113 IANQSFPDIPALLNHFKMRVLT 134 (308)
T ss_dssp ETTEEESSHHHHHHHHHHSCSS
T ss_pred EeCeeeCCHHHHHHHHhhcccc
Confidence 8999999999999999987664
No 205
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.76 E-value=3.9 Score=46.87 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=7.5
Q ss_pred cccchHHHHHHHHh
Q 039337 1045 TFEDLDEVVDRYID 1058 (1344)
Q Consensus 1045 ~y~DLDEii~~~V~ 1058 (1344)
.+..|++-|...|.
T Consensus 121 ~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 121 RIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHhH
Confidence 45555555555554
No 206
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=88.62 E-value=0.26 Score=61.32 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=41.4
Q ss_pred ccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhh---------ccCCCHHHHHhccCcEEEe
Q 039337 666 FAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVT---------AHGLGKKVFVNAVGFLRVR 720 (1344)
Q Consensus 666 ~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~---------v~~iG~kvf~n~a~FlrI~ 720 (1344)
..+|..|+||||++|.+|++. .|.|.+||.+ ++|||+|+.+++..-|...
T Consensus 96 ~~~L~~v~GVGpk~A~~i~~~-----G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~ 154 (578)
T 2w9m_A 96 LLDLLGVRGLGPKKIRSLWLA-----GIDSLERLREAAESGELAGLKGFGAKSAATILENVVFL 154 (578)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT-----TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHc-----CCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHH
Confidence 367899999999999999962 6899999875 8999999999985444443
No 207
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=88.52 E-value=0.086 Score=57.28 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=0.0
Q ss_pred ccchhhccCCCHHHHHHHHHHHHhcCCC--CCHHHHhhccCCCHHHHHhccCcE
Q 039337 666 FAPLQFISGLGPRKAASLQRSLVRAGAI--FTRKDFVTAHGLGKKVFVNAVGFL 717 (1344)
Q Consensus 666 ~~~Lq~v~GlGprkA~~ii~~r~~~g~~--~sr~~L~~v~~iG~kvf~n~a~Fl 717 (1344)
.+.|..|+||||++|+.|+++...-..+ .|.++|.+| |||+++.+....|+
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKL 224 (226)
T ss_dssp ------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHh
Confidence 3789999999999999999997543233 378999999 99999998887776
No 208
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=88.37 E-value=1.3 Score=52.90 Aligned_cols=83 Identities=25% Similarity=0.310 Sum_probs=60.2
Q ss_pred cccCCCcc-cCCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEe----CceeeEEEEeecCCCCcCcccccccCc
Q 039337 965 LIVHPCFQ-NVTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVY----DGVYAHKDIIEGGKDHKDIKSLVGIGK 1037 (1344)
Q Consensus 965 vI~HP~F~-n~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~----d~v~~HidV~E~~K~~~~~~~~~sLG~ 1037 (1344)
+-.+|||| +++-.+|++.|.. ...|+++||.|..-....+++++.. .+...|+.|...+... +.+
T Consensus 67 le~~~W~~g~i~r~~ae~~L~~~~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g~------~~i-- 138 (454)
T 1qcf_A 67 LETEEWFFKGISRKDAERQLLAPGNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGG------FYI-- 138 (454)
T ss_dssp GGGSTTEETTCCHHHHHHHHHSTTCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSC------EES--
T ss_pred cccccccccccchhhhhhhhhcCCCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCCc------EEE--
Confidence 45678766 7888999999955 5789999999976677778888763 3567898887643211 222
Q ss_pred eeeeCCccccchHHHHHHHHh
Q 039337 1038 TLKIGEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1038 ~L~i~~~~y~DLDEii~~~V~ 1058 (1344)
.....|..|.+++..|-+
T Consensus 139 ---~~~~~F~sl~eLv~~y~~ 156 (454)
T 1qcf_A 139 ---SPRSTFSTLQELVDHYKK 156 (454)
T ss_dssp ---SSSSCBSSHHHHHHHHTS
T ss_pred ---eCccccCCHHHHHHHHHh
Confidence 234689999999987753
No 209
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=88.32 E-value=0.54 Score=54.73 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=51.3
Q ss_pred cccccCCCcc-cCCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCCcCcccccccCceeee
Q 039337 963 ERLIVHPCFQ-NVTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDIKSLVGIGKTLKI 1041 (1344)
Q Consensus 963 ~RvI~HP~F~-n~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~~~~~~~~sLG~~L~i 1041 (1344)
+.+..+|||| +++-.+|+++|. +.|+++||-|..-. .++++++..+. ..|+.|...+ + .|.+
T Consensus 8 ~~l~~~~wyhg~i~r~~a~~lL~--~~G~flvR~s~~~~-~~~lsv~~~~~-~~h~~i~~~~--~-----~~~~------ 70 (377)
T 3cbl_A 8 KPLHEQLWYHGAIPRAEVAELLV--HSGDFLVRESQGKQ-EYVLSVLWDGL-PRHFIIQSLD--N-----LYRL------ 70 (377)
T ss_dssp SCGGGCTTBCTTCCHHHHHHHCC--STTEEEEEECC--C-CEEEEC------CCEEEC------C-----CCCC------
T ss_pred cccccCCccCCCCCHHHHHHHHh--cCCCEEEEEeCCCC-cEEEEEEECCC-ccchhhcccc--c-----eEEe------
Confidence 3467789988 688899999997 57999999997756 67888887554 5688886532 2 2333
Q ss_pred CCccccchHHHHHHHHh
Q 039337 1042 GEDTFEDLDEVVDRYID 1058 (1344)
Q Consensus 1042 ~~~~y~DLDEii~~~V~ 1058 (1344)
.+..|.+|.++|.-|..
T Consensus 71 ~~~~F~sl~~LI~~y~~ 87 (377)
T 3cbl_A 71 EGEGFPSIPLLIDHLLS 87 (377)
T ss_dssp ----CCSHHHHHHHHHH
T ss_pred cceeccchHHHHHHHhh
Confidence 46789999999988874
No 210
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A
Probab=88.23 E-value=0.1 Score=59.65 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=58.4
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEE------------------
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGL------------------ 1127 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v------------------ 1127 (1344)
+-.++-|.. -+++++|++|+ .+|. -.|-+-.+...||.|.|++.-+.+++|=-|..
T Consensus 8 ~~~~~WyhG~isR~eAe~lL~----~~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~~~ 82 (304)
T 2eyz_A 8 EERSSWYWGRLSRQEAVALLQ----GQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGV 82 (304)
T ss_dssp SSSSSSCCCCCCSSHHHHTTT----TCCS-SCEECCSCCSSSSCCEEEECSSSSCEEEECCCCSSCCSSCCCCCCCSSSS
T ss_pred ccCCCCccCCCCHHHHHHHhc----CCCC-CEEEEEeCCCCCCCEEEEEEECCEEEEEEEeecccccccccccccccccc
Confidence 344555542 26899999994 2332 33444446678999999999876676655554
Q ss_pred ecCceEEcccccccHHHHHHHHHhhcC
Q 039337 1128 YPKGFKFRKRMFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1128 ~p~gf~~~~~~~~~~~~L~~~fK~~~~ 1154 (1344)
....|.+..+.|+||.+||+|++++..
T Consensus 83 ~~~~~~~~~~~F~sl~~LV~~y~~~~l 109 (304)
T 2eyz_A 83 SPSRLRIGDQEFDSLPALLEFYKIHYL 109 (304)
T ss_dssp SCCCCCBTTBCCSCHHHHHTTTTTSCC
T ss_pred CCCeEEeCCcEECCHHHHHHHhhhCcc
Confidence 223456678999999999999998864
No 211
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=88.16 E-value=0.25 Score=57.15 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=37.6
Q ss_pred chhhccCCCHHHHHHHHHHHHhcCCC------------CCHHHHhhccCCCHHHHHhc
Q 039337 668 PLQFISGLGPRKAASLQRSLVRAGAI------------FTRKDFVTAHGLGKKVFVNA 713 (1344)
Q Consensus 668 ~Lq~v~GlGprkA~~ii~~r~~~g~~------------~sr~~L~~v~~iG~kvf~n~ 713 (1344)
.|+.|||||++.|+.|.++++ .|.+ .+..+|.+|+|||+|+..+.
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~-tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l 114 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA-TGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKF 114 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH-HSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH-hCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHH
Confidence 488999999999999999996 5665 45566778999999987766
No 212
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=87.80 E-value=0.26 Score=53.90 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=60.7
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecC---------------
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPK--------------- 1130 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~--------------- 1130 (1344)
+..++-|.. -+++++|++|. .+|. -.|-+=.+...||.|.|++..+.+++|--|....+
T Consensus 10 l~~~~WyhG~isR~eAe~lL~----~~~~-G~FLVR~S~~~~g~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~~~~~g~ 84 (230)
T 2dvj_A 10 EERSSWYWGRLSRQEAVALLQ----GQRH-GVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPGV 84 (230)
T ss_dssp SSSSSSCCSSCCTTHHHHHHT----TSSS-SCBEEECCSSCTTSCEEECCCSSSCCCEECBCCCSCCSSSSSSSSTTTSC
T ss_pred ccCCCcccCCCCHHHHHHHhc----CCCC-ceEEEEeCCCCCCCEEEEEEECCEEEEEEEEeCCCCcccccccccccccc
Confidence 334555542 36899999994 2332 34666667789999999999887777766655543
Q ss_pred ---ceEEcccccccHHHHHHHHHhhcCC
Q 039337 1131 ---GFKFRKRMFEDIDRLVAYFQRHIDD 1155 (1344)
Q Consensus 1131 ---gf~~~~~~~~~~~~L~~~fK~~~~d 1155 (1344)
-|.+....|+||.+||++++++..+
T Consensus 85 ~~~~~~~~~~~F~sl~~LV~~y~~~~l~ 112 (230)
T 2dvj_A 85 SPSRLRIGDQEFDSLPALLEFYKIHYLD 112 (230)
T ss_dssp CCCCEESSSCEESSHHHHHTTSTTTCSS
T ss_pred cceEEEeCCceeCCHHHHHHHHhhCccc
Confidence 3677799999999999999987643
No 213
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=87.49 E-value=0.34 Score=56.53 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=38.9
Q ss_pred chhhccCCCHHHHHHHHHHHHhcCCCCCHHHH------------hhccCCCHHHHHhc
Q 039337 668 PLQFISGLGPRKAASLQRSLVRAGAIFTRKDF------------VTAHGLGKKVFVNA 713 (1344)
Q Consensus 668 ~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L------------~~v~~iG~kvf~n~ 713 (1344)
.|+.|||||++.|+.|.++++ .|.+...++| .+|+|||+|+....
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~-tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l 118 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE-HGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRW 118 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH-HSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH-cCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHH
Confidence 489999999999999999996 7888877655 46999999987765
No 214
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.39 E-value=0.56 Score=46.35 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=47.1
Q ss_pred ceEEEEeCCCCCcEEEEEEecC--CCCceeeEEEecCceEEc-ccccccHHHHHHHHHhhcC
Q 039337 1096 IVYGFGISHEHPGTFILTYIRS--TNPHHEYIGLYPKGFKFR-KRMFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1096 i~Y~f~~~~~~PG~f~L~~~~~--~~~~~e~i~v~p~gf~~~-~~~~~~~~~L~~~fK~~~~ 1154 (1344)
-.|-+--+. .||.|.|++..+ ..+.|=-|.-..++|++. ...|+||.+||++++++..
T Consensus 45 G~FLVR~S~-~~g~y~LSv~~~~~~~vkH~rI~~~~~~~~i~~~~~F~sL~eLV~hY~~~~l 105 (126)
T 2cr4_A 45 GLYCIRNSS-TKSGKVLVVWDETSNKVRNYRIFEKDSKFYLEGEVLFVSVGSMVEHYHTHVL 105 (126)
T ss_dssp TCEEEEECS-STTCEEEEEEETTTTEECCEECEEETTEEESSSSCEESSHHHHHHHHTTSCC
T ss_pred CeEEEEecC-CCCCEEEEEEeCCCCCEEEEEEEECCCeEEEcCCccCCCHHHHHHHHhhCCc
Confidence 456666677 999999999987 667777777777788886 4699999999999997643
No 215
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=87.26 E-value=0.8 Score=55.29 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=45.7
Q ss_pred CCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEe
Q 039337 846 EGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCR 917 (1344)
Q Consensus 846 ~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk 917 (1344)
+|++++|+|+.+ . +..|+||++.+..+ . .....+++||.|+|+|.+||..+.+|.+...
T Consensus 403 ~g~~f~g~vv~l---------~-~~~glV~v~~l~~d-~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 403 PERVWDAVVVDR---------R-GAQATLLIPDLAFD-V--QVNTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp TTCCEEEEEEEE---------E-TTEEEEEEGGGTEE-E--EEECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEEEEE---------e-CcEEEEEECCCCeE-E--ecCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 567778877543 2 45789999988765 2 2345799999999999999999999988754
No 216
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=87.24 E-value=0.11 Score=60.55 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=7.2
Q ss_pred ccHHHHHHHHHhhcC
Q 039337 1140 EDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1140 ~~~~~L~~~fK~~~~ 1154 (1344)
..|...+.-+-..+.
T Consensus 232 ~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 232 ELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544443
No 217
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=87.07 E-value=0.13 Score=55.76 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=42.2
Q ss_pred cchhhccCCCHHHHHHHHHHHHhc--CCCCCHHHHhhccCCCHHHHHhccCcE
Q 039337 667 APLQFISGLGPRKAASLQRSLVRA--GAIFTRKDFVTAHGLGKKVFVNAVGFL 717 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~~--g~~~sr~~L~~v~~iG~kvf~n~a~Fl 717 (1344)
.+|..|+|+|+.+|..|+++...- =.-.+.++|..++|||+++.++...|+
T Consensus 162 ~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 162 YILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 578899999999999999987431 122678999999999999999887775
No 218
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=86.60 E-value=0.67 Score=54.21 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=61.0
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCC-CcEEEEEEecCCCCceeeEEEecCceEEcc-cccccHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEH-PGTFILTYIRSTNPHHEYIGLYPKGFKFRK-RMFEDID 1143 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~-PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~-~~~~~~~ 1143 (1344)
|-.++-|.. -++++++++|. .+|.. .|-+-.|... ||.|.|++.-+..++|--|.-...+|.+.. ..|+||.
T Consensus 7 L~~~~WYhG~IsR~eAE~lL~----~~~dG-~FLVR~S~s~~~g~y~LSvr~~~~v~H~rI~~~~g~y~l~~~~~F~SL~ 81 (373)
T 3hhm_B 7 LQNAEWYWGDISREEVNEKLR----DTADG-TFLVRDASTKMHGDYTLTLRKGGNNKLIKIFHRDGKYGFSDPLTFSSVV 81 (373)
T ss_dssp GGGCTTEEESCCHHHHHHHTT----TCCTT-EEEEEECSCC--CCEEEEEEETTEEEEEEECCSSSCBCSSSSCCBSSSH
T ss_pred cccCCccCCCCCHHHHHHHhc----CCCCC-CEEEeccCCCCCCCEEEEEEECCeeEEEEEEecCCeEEeCCCCCcCCHH
Confidence 455666653 37999999995 23332 3555556676 999999999887777766776677788885 8999999
Q ss_pred HHHHHHHhhc
Q 039337 1144 RLVAYFQRHI 1153 (1344)
Q Consensus 1144 ~L~~~fK~~~ 1153 (1344)
+||+|++.+.
T Consensus 82 eLV~~Y~~~~ 91 (373)
T 3hhm_B 82 ELINHYRNES 91 (373)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHhhCC
Confidence 9999999876
No 219
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=85.80 E-value=0.15 Score=59.70 Aligned_cols=12 Identities=25% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 039337 1287 AGREAFPGGWGS 1298 (1344)
Q Consensus 1287 ~g~g~~~gG~g~ 1298 (1344)
.||++..++||+
T Consensus 37 sGws~~~~p~g~ 48 (551)
T 2b5u_A 37 SGWSSENNPWGG 48 (551)
T ss_dssp ------------
T ss_pred CCcccCCCCCCC
Confidence 345444444543
No 220
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=84.90 E-value=1.5 Score=46.68 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=60.9
Q ss_pred HHHhhCcccccCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCc-eeeEEEe--cCce------EEc
Q 039337 1065 KAMLSYRKFRKGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPH-HEYIGLY--PKGF------KFR 1135 (1344)
Q Consensus 1065 ~~i~~h~kf~~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~-~e~i~v~--p~gf------~~~ 1135 (1344)
..++.|+.|++-+-.+++++|.. -..-=+.+.+|.+-|+++.|.++...++. |.-|.=. +..| +..
T Consensus 3 ~RvI~HP~F~n~~~~qAe~~L~~-----~~~Ge~iIRPSSkg~dhLtvTwKv~d~v~qHidI~E~~K~~~~slG~~L~i~ 77 (197)
T 3or8_A 3 HRVINHPYYFPFNGKQAEDYLRS-----KERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKVLVVE 77 (197)
T ss_dssp -CCCCCTTEECCCHHHHHHHHTT-----SCTTCEEEEECSSCTTEEEEEEEEETTEEEEEEEEEESCSSTTSCCSEEEET
T ss_pred CcccCCCCcCCCCHHHHHHHHhc-----CCCCCEEEeeCCCCCCcEEEEEEECCCcEEEEEEEEcCCccccccCceEEEC
Confidence 45789999999999999999943 34556899999999999999999975543 3333222 2233 455
Q ss_pred ccccccHHHHHHHHH
Q 039337 1136 KRMFEDIDRLVAYFQ 1150 (1344)
Q Consensus 1136 ~~~~~~~~~L~~~fK 1150 (1344)
+..|.|||+||.-|=
T Consensus 78 ~~~y~DLDElI~~~V 92 (197)
T 3or8_A 78 GQRYHDLDQIIVEYL 92 (197)
T ss_dssp TEEESSHHHHHHHTH
T ss_pred CeEECCHHHHHHHHH
Confidence 789999999997765
No 221
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=82.77 E-value=0.17 Score=43.84 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=36.0
Q ss_pred cchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHH-HHhccCcE
Q 039337 667 APLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKV-FVNAVGFL 717 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kv-f~n~a~Fl 717 (1344)
+.|..||||||++++.|+++... .=.=.|.+||.++ ||++. -+++-.|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHH
Confidence 68999999999999999987532 1123567888777 77766 66665555
No 222
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=81.27 E-value=0.14 Score=47.01 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=38.3
Q ss_pred ccccccccccccchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHH-HHhccCcE
Q 039337 656 INLAIHREWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKV-FVNAVGFL 717 (1344)
Q Consensus 656 iN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kv-f~n~a~Fl 717 (1344)
.|.+.. +.|.-||||||+.++.|+++... .=.=.|.++|.+| ||.++ -+++-.||
T Consensus 12 ~N~~~~-----s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l 69 (84)
T 1z00_B 12 YNPGPQ-----DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFI 69 (84)
T ss_dssp SCHHHH-----HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHH
T ss_pred ccccHH-----HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHH
Confidence 466665 79999999999999999987521 1122456677766 77666 56555555
No 223
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=78.59 E-value=10 Score=40.41 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=56.7
Q ss_pred Ccccc-cCCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecC-ceEEcccccccHHHHHH
Q 039337 1070 YRKFR-KGSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPK-GFKFRKRMFEDIDRLVA 1147 (1344)
Q Consensus 1070 h~kf~-~g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~-gf~~~~~~~~~~~~L~~ 1147 (1344)
++-|. .-++++.+++|. ..+|.. .|..-.+...||.|.|++..+..+.|--|.-..+ .|.+....|+++.+|++
T Consensus 58 ~~w~~g~isr~~ae~lL~---~~~~~G-~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~ 133 (217)
T 1gri_A 58 HPWFFGKIPRAKAEEMLS---KQRHDG-AFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVD 133 (217)
T ss_dssp CSSBCTTCCHHHHHHHHH---TCSSTT-CEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHH
T ss_pred chhhcccCCHHHHHHHHh---ccCCCc-eEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHH
Confidence 44443 236888999882 333433 4555567789999999999876565554544444 46667889999999999
Q ss_pred HHHhhcC
Q 039337 1148 YFQRHID 1154 (1344)
Q Consensus 1148 ~fK~~~~ 1154 (1344)
+++.+..
T Consensus 134 ~~~~~~~ 140 (217)
T 1gri_A 134 YHRSTSV 140 (217)
T ss_dssp HHHHSCS
T ss_pred hhhcccc
Confidence 9997743
No 224
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=75.61 E-value=2.1 Score=48.48 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=49.7
Q ss_pred cccccccc-----cc----ccccchhhccCCCH----HHHHHHHHHHH-------------------------hcCCCCC
Q 039337 654 LDINLAIH-----RE----WQFAPLQFISGLGP----RKAASLQRSLV-------------------------RAGAIFT 695 (1344)
Q Consensus 654 VdiN~A~~-----~~----~~~~~Lq~v~GlGp----rkA~~ii~~r~-------------------------~~g~~~s 695 (1344)
+|||.+.. .| .+..||+.+ |+.+ ..|.+|++++. +|++|.+
T Consensus 78 fNLN~L~~~~~~~~~~~~~~~~~Ll~~l-g~~~~~a~~la~~i~dw~D~d~~~~~~~GaE~~~Y~~~~~~y~~~n~~~~~ 156 (298)
T 3ci0_K 78 FNLNALAQPTTASRPLAVQQLIALISRL-DVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLAD 156 (298)
T ss_dssp EEGGGGGSCCCSSSCHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHSSSSSCCSSSCCCHHHHHTSSSCBCCCCSCCSS
T ss_pred eehhhcccccCCcChHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhcCCCCccCCCCccccchhhcCCCCCCCCCCCCC
Confidence 67776642 22 234555555 7775 45666666662 3578999
Q ss_pred HHHHhhccCCCHHHHHhccCcEEEecC
Q 039337 696 RKDFVTAHGLGKKVFVNAVGFLRVRRS 722 (1344)
Q Consensus 696 r~~L~~v~~iG~kvf~n~a~FlrI~~~ 722 (1344)
.+||..|.||.+.+|..+..||.|-+.
T Consensus 157 ~~EL~~v~G~~~~~~~~l~p~vtv~p~ 183 (298)
T 3ci0_K 157 ISEMRVVQGMDAGLYQKLKPLVCALPM 183 (298)
T ss_dssp GGGGGGSTTCCHHHHHHHTTTEECCSC
T ss_pred HHHHHhccCCCHHHHHhhcCeEEEecC
Confidence 999999999999999999999999753
No 225
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=75.20 E-value=1.3 Score=54.85 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=35.8
Q ss_pred cccchhhccCCCHHHHHHHHHHHHhcCCCCCHHH---------HhhccCCCHHHHHhcc
Q 039337 665 QFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKD---------FVTAHGLGKKVFVNAV 714 (1344)
Q Consensus 665 ~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~---------L~~v~~iG~kvf~n~a 714 (1344)
...+|..|+||||++|.+|++.+ .+.+.++ |.+++|||+|+-++..
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~l----g~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGL----GIDSLEKLKAALDRGDLTRLKGFGPKRAERIR 145 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTS----CCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhc----CCCCHHHHHHHHHcCCcccCCCCCccHHHHHH
Confidence 34688899999999999998864 3444444 4568999999998863
No 226
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=75.19 E-value=1.8 Score=50.87 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=37.3
Q ss_pred chhhccCCCHHHHHHHHHHHHhcCCCCCHHHH------------hhccCCCHHHHHhc
Q 039337 668 PLQFISGLGPRKAASLQRSLVRAGAIFTRKDF------------VTAHGLGKKVFVNA 713 (1344)
Q Consensus 668 ~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L------------~~v~~iG~kvf~n~ 713 (1344)
.|+.|||||++.|+.|.++++ .|.+...++| .+|+|+|+|+....
T Consensus 81 ~l~~lpGIG~~ia~kI~E~l~-tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGIIE-DGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHHHH-HSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH-cCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 489999999999999999996 6778766655 46999999886654
No 227
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=74.30 E-value=6.5 Score=42.31 Aligned_cols=66 Identities=8% Similarity=0.059 Sum_probs=47.8
Q ss_pred ccCCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCccccCcc------------cccCCCCEEEEEEEEEeCCCc
Q 039337 844 LAEGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWRDSELS------------DKLHEGDILTCKIKSIQKNRY 910 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~------------~~~~vGq~V~vkVi~iD~~~~ 910 (1344)
-.+|+++.|+|+.+...|+.+.+-.-.+.+|+...|.++ ...++. +--++|+.|+.||.+++.+..
T Consensus 127 Pf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~-~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 127 PQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVD-WTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSS-CBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred cCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCc-ccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 458999999999999988776442235789999888765 222221 112469999999999987553
No 228
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=73.91 E-value=5.5 Score=37.80 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCeEEEEEEEEEecccEEEEeCCCeEEEEeceecCCCcc-c---cC-cccccCCCCEEEEE
Q 039337 846 EGRVVQATVRRVQGQRAICVLESGLAGMLMKEDYSDDWR-D---SE-LSDKLHEGDILTCK 901 (1344)
Q Consensus 846 ~G~iV~g~V~~V~~~g~fV~L~~gi~GlIh~s~lsd~~~-~---~~-~~~~~~vGq~V~vk 901 (1344)
.|..+.+.|+.+.+.++-|.+..|-.+.|..+.|.+... . .. +.+++++||+|.|+
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 488899999999999999999888888899998887521 1 23 56789999999998
No 229
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=73.29 E-value=7 Score=46.99 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=58.0
Q ss_pred HhhCcccc----cC--CHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccc
Q 039337 1067 MLSYRKFR----KG--SKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFE 1140 (1344)
Q Consensus 1067 i~~h~kf~----~g--~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~ 1140 (1344)
+.+++.|. .| +++++|++|. ++. -.|-+=-|...||.|.|++..+..+.|--|.- ..+|++....|+
T Consensus 43 ~~~~~wy~~~w~hg~i~r~~ae~lL~-----~~~-G~FLvR~S~~~~g~~~Lsv~~~~~v~H~~I~~-~g~~~~~~~~F~ 115 (463)
T 3cxl_A 43 VENRPKYYGREFHGMISREAADQLLI-----VAE-GSYLIRESQRQPGTYTLALRFGSQTRNFRLYY-DGKHFVGEKRFE 115 (463)
T ss_dssp CTTCCTTCCTTBCCSCCHHHHHHHHT-----TST-TEEEEEECSSSTTCEEEEEECSSSEEEEECEE-SSSEESSSCCBS
T ss_pred ccCCCCccccccccCCCHHHHHHHHc-----CCC-CeEEEeccCCCCCCEEEEEEECCEEEEEEEec-CCeEEECCCccC
Confidence 44555551 33 7899999994 232 45666668789999999999987776665554 455777889999
Q ss_pred cHHHHHH-----HHHhh
Q 039337 1141 DIDRLVA-----YFQRH 1152 (1344)
Q Consensus 1141 ~~~~L~~-----~fK~~ 1152 (1344)
||.+||+ ++...
T Consensus 116 sl~~Lv~dGl~~~~~~~ 132 (463)
T 3cxl_A 116 SIHDLVTDGLITLYIET 132 (463)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhccC
Confidence 9999999 77644
No 230
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=70.97 E-value=3.4 Score=49.26 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=58.3
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC-----CCCceeeEEEecCc-eEEc-cc
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS-----TNPHHEYIGLYPKG-FKFR-KR 1137 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~-----~~~~~e~i~v~p~g-f~~~-~~ 1137 (1344)
.+..++.|.. -++++++++|.... + ..-.|-+-.+...||.|.|+.... ..++|=.|.-.++| |++. +.
T Consensus 61 ~le~~~w~~g~~~r~~ae~~L~~~~--~-~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~~~~~~ 137 (452)
T 1fmk_A 61 SIQAEEWYFGKITRRESERLLLNAE--N-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT 137 (452)
T ss_dssp SGGGSTTEEETCCHHHHHHHHTCTT--S-CTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEEECTTSCEESSTTS
T ss_pred cccccccccCCccHHHHHHHhccCC--C-CCceEEEEeCCCCCCceEEEEEeeccCCCCcEEEEEEEEcCCCCEEEecCc
Confidence 3445566643 37899999994211 1 224577777888999999999852 23556666666666 5444 57
Q ss_pred ccccHHHHHHHHHhhc
Q 039337 1138 MFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1138 ~~~~~~~L~~~fK~~~ 1153 (1344)
.|+|+.+|+++++++-
T Consensus 138 ~F~Sl~~Li~~y~~~~ 153 (452)
T 1fmk_A 138 QFNSLQQLVAYYSKHA 153 (452)
T ss_dssp EESSHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHhhhcc
Confidence 8999999999998643
No 231
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=68.39 E-value=2.7 Score=45.91 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=35.8
Q ss_pred cCCCHHHHHHHHHHHHh--cCCC------------CCHHHHhhccCCCHHHHHhccCc
Q 039337 673 SGLGPRKAASLQRSLVR--AGAI------------FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 673 ~GlGprkA~~ii~~r~~--~g~~------------~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
+|++.+||+.|.+.-+. .|.+ ..+++|+.++|||++|-.-..-|
T Consensus 112 ~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 112 CGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 89999999999887653 5766 35888999999999997766655
No 232
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=67.89 E-value=3.9 Score=50.02 Aligned_cols=86 Identities=22% Similarity=0.309 Sum_probs=56.9
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecC-----CCCceeeEEEecCc-eEEc-cc
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRS-----TNPHHEYIGLYPKG-FKFR-KR 1137 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~-----~~~~~e~i~v~p~g-f~~~-~~ 1137 (1344)
.+..++.|.. -++++++++|+..- | ..--|-+-.+...||.|.|+.... ..++|=.|....+| |++. +.
T Consensus 144 ~l~~~~wy~g~i~r~~ae~~L~~~~--~-~~G~FLvR~S~~~~g~y~lsv~~~~~~~~~~v~h~~I~~~~~g~~~i~~~~ 220 (535)
T 2h8h_A 144 SIQAEEWYFGKITRRESERLLLNAE--N-PRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRT 220 (535)
T ss_dssp SGGGSTTBCCSCCHHHHHHHHTCTT--C-CTTEEEEEECSSSTTCEEEEEEEEETTTEEEEEEEEEBC-CCSCEEEETTE
T ss_pred cccccceeccccCHHHHHHHhccCC--C-CCCeEEEEecCCCCCcEEEEEEeeccCCCCceEEEEEEEcCCCcEEeeccc
Confidence 3445665543 37899999994211 1 224566667888999999999852 23445445544555 5554 67
Q ss_pred ccccHHHHHHHHHhhcC
Q 039337 1138 MFEDIDRLVAYFQRHID 1154 (1344)
Q Consensus 1138 ~~~~~~~L~~~fK~~~~ 1154 (1344)
.|+++.+|+++++++-.
T Consensus 221 ~F~SL~eLv~~y~~~~~ 237 (535)
T 2h8h_A 221 QFNSLQQLVAYYSKHAD 237 (535)
T ss_dssp EESSHHHHHHHHHHCCT
T ss_pred cccChHHhheeeccccC
Confidence 89999999999987543
No 233
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=66.22 E-value=3.9 Score=44.46 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=36.6
Q ss_pred hccCCCHHHHHHHHHHHHh--cCCCCC------------HHHHhhccCCCHHHHHhccCc
Q 039337 671 FISGLGPRKAASLQRSLVR--AGAIFT------------RKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 671 ~v~GlGprkA~~ii~~r~~--~g~~~s------------r~~L~~v~~iG~kvf~n~a~F 716 (1344)
.-+|++.+||+.|.+.-+. +|.+.+ +++|+.++|||++|-.-..-|
T Consensus 99 r~~G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 99 RACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3489999999999877653 677743 889999999999997766544
No 234
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=65.52 E-value=7.8 Score=43.50 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=45.1
Q ss_pred cccCCCccc-CCHHHHHHHhhc--CCCCcEEEecCCCCCCceEEEEEEeCceeeE
Q 039337 965 LIVHPCFQN-VTADEAMKLLSA--KEPGESIIRPSSRGPSYLTLTLKVYDGVYAH 1016 (1344)
Q Consensus 965 vI~HP~F~n-~~~~qAe~~L~~--~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~H 1016 (1344)
.+.||-|.- +|+.+|.++|+. ++.|.+|||+|+.-...-+|++=-.++-..|
T Consensus 240 a~~hpGy~aFlTydEv~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~~I~q 294 (329)
T 3bux_B 240 AVTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQ 294 (329)
T ss_dssp TTSCTTBCTTCCHHHHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTSCEEE
T ss_pred HhcCcchhheeeHHHHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCCceee
Confidence 789999875 589999999999 8999999999999899989998777774444
No 235
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=63.00 E-value=3.2 Score=55.30 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=51.4
Q ss_pred CcccCCHHHHHHHh-----hcCCCCcEEEecCCCCCCceEEEEEEeCceeeEEEEeecCCCC--cCcccccccCceeeeC
Q 039337 970 CFQNVTADEAMKLL-----SAKEPGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDH--KDIKSLVGIGKTLKIG 1042 (1344)
Q Consensus 970 ~F~n~~~~qAe~~L-----~~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~~HidV~E~~K~~--~~~~~~~sLG~~L~i~ 1042 (1344)
.|+.++..+...+| ++..+|++|---.++-.++ .+.+.+..|+-..|.|.+..... .+....+++|+++.+.
T Consensus 879 ~f~~~~~~e~~~mltget~~~l~~G~iv~G~V~~V~~f-GaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vk 957 (1219)
T 3psi_A 879 DFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHN-DIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAK 957 (1219)
T ss_dssp CCCCBCHHHHHHHHTCCCTTTSCTTCEEEEEEEEECSS-CEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEE
T ss_pred ccCCCCHHHHHHhhccCcHhhCCCCCEEEEEEEEEecc-eEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEE
Confidence 35667888887554 5667999998887776666 78889888888888888775432 2333458888877651
Q ss_pred -----Cc--------------------ccc-c---hHHHHH-HH---------HhhhHHHHHHHhhCcccccCCHHHHHH
Q 039337 1043 -----ED--------------------TFE-D---LDEVVD-RY---------IDPLVSHLKAMLSYRKFRKGSKAEVDE 1083 (1344)
Q Consensus 1043 -----~~--------------------~y~-D---LDEii~-~~---------V~pm~~~v~~i~~h~kf~~g~~~e~e~ 1083 (1344)
.+ .|. | .|.... .- -+.-......++.|+.|++-+-.++++
T Consensus 958 Vl~VD~~~~rI~LSlk~~dl~~~~~~~~~~~~~~~~d~~~E~~d~~~~~~~~~k~~~~~~~~RvI~HP~F~n~~~~qAe~ 1037 (1219)
T 3psi_A 958 VIYIDYANITAEVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHRVINHPYYFPFNGRQAED 1037 (1219)
T ss_dssp EEEEEGGGTEEEEECCHHHHC-----------------------------------------------------------
T ss_pred EEEEECCCCEEEEEecHHHhcchhcccccccCcccchHHHHHHHHHHHHHhhhhhhhcccccccccCCCCCCCCHHHHHH
Confidence 00 110 0 010000 00 011233556789999999989999999
Q ss_pred HHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEec----C------ceEEcccccccHHHHHHHH
Q 039337 1084 LLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYP----K------GFKFRKRMFEDIDRLVAYF 1149 (1344)
Q Consensus 1084 ~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p----~------gf~~~~~~~~~~~~L~~~f 1149 (1344)
+|.. -.+-=+.+-+|.+-|.+..+.++...++.. +|-|.- + =++..++.|.|||+||.-|
T Consensus 1038 ~L~~-----~~~Gd~vIRPSSkG~dhLtvTwKv~d~vyq-HidV~E~~K~n~~slG~~L~I~~~~y~DLDEli~r~ 1107 (1219)
T 3psi_A 1038 YLRS-----KERGEFVIRQSSRGDDHLVITWKLDKDLFQ-HIDIQELEKENPLALGKVLIVDNQKYNDLDQIIVEY 1107 (1219)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHhc-----CCCCCEEEeecCCCCCceEEEEEEcCCcEE-EEEEEecCCccccccCceEEECCceECCHHHHHHHH
Confidence 9943 234457888899999999999998755432 233332 2 2455577999999998544
No 236
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=62.36 E-value=1.6 Score=46.46 Aligned_cols=6 Identities=0% Similarity=0.130 Sum_probs=2.6
Q ss_pred eeeEEE
Q 039337 1122 HEYIGL 1127 (1344)
Q Consensus 1122 ~e~i~v 1127 (1344)
++||.|
T Consensus 52 T~wi~V 57 (199)
T 3eiv_A 52 SLFLTC 57 (199)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 334444
No 237
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=62.10 E-value=16 Score=43.40 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=63.8
Q ss_pred hhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEc-ccccccHHHH
Q 039337 1068 LSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFR-KRMFEDIDRL 1145 (1344)
Q Consensus 1068 ~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~-~~~~~~~~~L 1145 (1344)
..++.|.. -++++++++|. +|.--.|-.-.+...||.|.|+.....+++|--|.....+|.+. ...|.++.+|
T Consensus 78 ~~~~wyhg~i~r~~ae~~L~-----~~~~G~FlvR~S~~~~g~~~Lsv~~~~~v~H~~I~~~~~~~~i~~~~~F~sl~eL 152 (450)
T 1k9a_A 78 SLMPWFHGKITREQAERLLY-----PPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFENLMQL 152 (450)
T ss_dssp ESCTTBCTTCCHHHHHHHTC-----SCCTTEEEEEECSSSTTSEEEEEECSSSEEEEEEEEETTEEESSSSSCBSSHHHH
T ss_pred ccccccccCcCHHHhhhhhc-----cCCCceEEEEecCCCCCceEEEEEeCCeeeEEEEEecCCceEeccccccccHHHH
Confidence 44555643 26899999993 45456777777889999999999887777787787778888886 6789999999
Q ss_pred HHHHHhhc
Q 039337 1146 VAYFQRHI 1153 (1344)
Q Consensus 1146 ~~~fK~~~ 1153 (1344)
+.++++..
T Consensus 153 v~~y~~~~ 160 (450)
T 1k9a_A 153 VEHYTTDA 160 (450)
T ss_dssp HHHHHHCC
T ss_pred Hhhhcccc
Confidence 99998654
No 238
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=61.40 E-value=9.1 Score=42.74 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=42.9
Q ss_pred ccCCCccc-CCHHHHHHHhh--cCCCCcEEEecCCCCCCceEEEEEEeCcee
Q 039337 966 IVHPCFQN-VTADEAMKLLS--AKEPGESIIRPSSRGPSYLTLTLKVYDGVY 1014 (1344)
Q Consensus 966 I~HP~F~n-~~~~qAe~~L~--~~~~Gd~viRPSSkG~d~L~vTwKv~d~v~ 1014 (1344)
|.||-|.- +|+.+|.++|+ .++.|.+|||+|..-...-+|++=-.|+-.
T Consensus 226 v~hpGy~aFlTydEV~~~L~~~~~KpGsYIfR~ScTrlGqwAIgYV~s~g~I 277 (323)
T 3op0_A 226 VNHPGYMAFLTYDEVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGSI 277 (323)
T ss_dssp TTCTTBCTTCCHHHHHHHTTGGGGSTTEEEEEECSSSTTCEEEEEECTTSCE
T ss_pred hcCcceeeeeeHHHHHHHHHHhccCCCcEEEEeccCccCceEEEEEcCCCce
Confidence 79999987 58999999999 789999999999988888899987777643
No 239
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=61.12 E-value=7.9 Score=46.03 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=57.0
Q ss_pred HHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEec-----CCCCceeeEEEecCc-eEEc-cc
Q 039337 1066 AMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIR-----STNPHHEYIGLYPKG-FKFR-KR 1137 (1344)
Q Consensus 1066 ~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~-----~~~~~~e~i~v~p~g-f~~~-~~ 1137 (1344)
.+-.++.|.. -++++++++|... ....-.|-+-.+...||.|.|+... +..++|=.|...++| |++. ..
T Consensus 66 ~le~~~W~~g~i~r~~ae~~L~~~---~~~~G~FLvR~s~~~~g~y~lsv~~~~~~~~~~v~H~~I~~~~~g~~~i~~~~ 142 (454)
T 1qcf_A 66 SLETEEWFFKGISRKDAERQLLAP---GNMLGSFMIRDSETTKGSYSLSVRDYDPRQGDTVKHYKIRTLDNGGFYISPRS 142 (454)
T ss_dssp CGGGSTTEETTCCHHHHHHHHHST---TCCTTCEEEEECSSSTTSEEEEEEEEETTTEEEEEEEEEEECTTSCEESSSSS
T ss_pred ccccccccccccchhhhhhhhhcC---CCCCceEEEEECcCCCCeEEEEEEecccCCCCceEEEEEEEcCCCcEEEeCcc
Confidence 4556665543 3789999998421 1123357777788999999999986 223445455555555 4443 56
Q ss_pred ccccHHHHHHHHHhhc
Q 039337 1138 MFEDIDRLVAYFQRHI 1153 (1344)
Q Consensus 1138 ~~~~~~~L~~~fK~~~ 1153 (1344)
.|+++.+|++++++.-
T Consensus 143 ~F~sl~eLv~~y~~~~ 158 (454)
T 1qcf_A 143 TFSTLQELVDHYKKGN 158 (454)
T ss_dssp CBSSHHHHHHHHTSSC
T ss_pred ccCCHHHHHHHHHhcc
Confidence 9999999999998753
No 240
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=60.23 E-value=10 Score=49.77 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=51.4
Q ss_pred ccccccccccccccc------ccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhccCCCHHHHHhcc
Q 039337 649 TNQVGLDINLAIHRE------WQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAV 714 (1344)
Q Consensus 649 vn~vGVdiN~A~~~~------~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v~~iG~kvf~n~a 714 (1344)
+.-..+|||...... .+.--|.-|.|||..-|++|++.|+ +|+|.|.+||..-.++.+++.+.++
T Consensus 943 i~vlppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~-~gpF~s~~Df~~R~~v~k~~lE~Li 1013 (1041)
T 3f2b_A 943 FSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRARE-EGEFLSKEDLQQRGKLSKTLLEYLE 1013 (1041)
T ss_dssp CEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHH-TSCCCSHHHHHHHHTCCHHHHHHHH
T ss_pred CeeCcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHh-CCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 444578999876322 2334578899999999999999996 6999999999877779999888753
No 241
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=57.98 E-value=14 Score=48.05 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=50.4
Q ss_pred cccccccccccccccccccc-------chhhccCCCHHHHHHHHHHHHhcCC-CCCHHHHhhc---cCCCHHHHHhcc
Q 039337 648 VTNQVGLDINLAIHREWQFA-------PLQFISGLGPRKAASLQRSLVRAGA-IFTRKDFVTA---HGLGKKVFVNAV 714 (1344)
Q Consensus 648 ~vn~vGVdiN~A~~~~~~~~-------~Lq~v~GlGprkA~~ii~~r~~~g~-~~sr~~L~~v---~~iG~kvf~n~a 714 (1344)
-+.-..+|||.... .++.. -|..|.|||..-|++|++.|+ +|+ |+|.+||..- +.+.+++.+.++
T Consensus 808 Gi~vlppdin~S~~-~f~~~~~~~Ir~gl~~Ikgvg~~~~~~Iv~~R~-~g~~f~s~~Df~~R~~~~~~~~~~le~Li 883 (910)
T 2hnh_A 808 GLKILPPDINSGLY-HFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARN-KGGYFRELFDLCARTDTKKLNRRVLEKLI 883 (910)
T ss_dssp TCCEECCCTTTCBS-SCEECTTSCEECBGGGSTTCCHHHHHHHHHHHH-TTCCCSSHHHHTTSSCSSSSCHHHHHHHH
T ss_pred CCeECCcceeecCC-CeEEecCCeeehhHHhcCCCCHHHHHHHHHHHh-cCCCCCCHHHHHHhccccCCCHHHHHHHH
Confidence 34445789997654 33333 688999999999999999998 899 9999999653 357888887764
No 242
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=57.69 E-value=9.9 Score=43.89 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=48.7
Q ss_pred HhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceEEcccccccHHHH
Q 039337 1067 MLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFKFRKRMFEDIDRL 1145 (1344)
Q Consensus 1067 i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~~~~~~~~~~~~L 1145 (1344)
+..++.|.. -+++++|++|. + --.|-.-.+...| .|.|+......+.|=-|.-..+-|.+.+..|+++.+|
T Consensus 10 l~~~~wyhg~i~r~~a~~lL~-----~--~G~flvR~s~~~~-~~~lsv~~~~~~~h~~i~~~~~~~~~~~~~F~sl~~L 81 (377)
T 3cbl_A 10 LHEQLWYHGAIPRAEVAELLV-----H--SGDFLVRESQGKQ-EYVLSVLWDGLPRHFIIQSLDNLYRLEGEGFPSIPLL 81 (377)
T ss_dssp GGGCTTBCTTCCHHHHHHHCC-----S--TTEEEEEECC--C-CEEEEC-----CCEEEC----CCCCC----CCSHHHH
T ss_pred cccCCccCCCCCHHHHHHHHh-----c--CCCEEEEEeCCCC-cEEEEEEECCCccchhhccccceEEecceeccchHHH
Confidence 455666653 26899999995 1 2446666677777 8999998877777777776777788889999999999
Q ss_pred HHHHHhhcC
Q 039337 1146 VAYFQRHID 1154 (1344)
Q Consensus 1146 ~~~fK~~~~ 1154 (1344)
+++++.+-.
T Consensus 82 I~~y~~~~~ 90 (377)
T 3cbl_A 82 IDHLLSTQQ 90 (377)
T ss_dssp HHHHHHHTC
T ss_pred HHHHhhccC
Confidence 999997543
No 243
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=57.58 E-value=33 Score=30.47 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=36.0
Q ss_pred eEEEEEEEEEe---cccEEEEeCCC-eEEEEeceecCCCccccCcccccCCCCEEEEEEEEE
Q 039337 848 RVVQATVRRVQ---GQRAICVLESG-LAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSI 905 (1344)
Q Consensus 848 ~iV~g~V~~V~---~~g~fV~L~~g-i~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~i 905 (1344)
|..+|+|+... .|| |+.-+.| -+ |+|+|.|... . .++.||.|...|..-
T Consensus 1 M~~~G~Vkwfn~~KGfG-FI~~~dg~~d-FvH~s~i~~~-----g--~l~~G~~V~F~~~~g 53 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFG-FIKDENGDNR-YFHVIKVANP-----D--LIKKDAAVTFEPTTN 53 (74)
T ss_dssp CCEEEEEEEEETTTTEE-EEEESSSCEE-EEEGGGBSSG-----G--GCCTTCEEEEEEEEC
T ss_pred CCcceEEEEEECCCCeE-EEecCCCCce-EEEHhHcccC-----C--CCCCCCEEEEEEEeC
Confidence 34689999884 366 5555544 57 9999998765 1 689999999988754
No 244
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=57.49 E-value=2 Score=46.38 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=37.9
Q ss_pred cchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCH-HHHHhccCcE
Q 039337 667 APLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGK-KVFVNAVGFL 717 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~-kvf~n~a~Fl 717 (1344)
+.|..|+||||+.|+.|+++... .=.-.|.++|..| ||+ ++-++...|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~V--IG~~~~A~~I~~~f 219 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARV--IGSTEIARRVLDIL 219 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHH--HTCHHHHHHHHHHC
T ss_pred ccccCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHH--hChHHHHHHHHHHh
Confidence 68999999999999999998521 1123478999988 999 8877766554
No 245
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=57.42 E-value=5.1 Score=45.30 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=36.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCC---------HHHHhhccCCCHHHHHhccCc
Q 039337 672 ISGLGPRKAASLQRSLVRAGAIFT---------RKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 672 v~GlGprkA~~ii~~r~~~g~~~s---------r~~L~~v~~iG~kvf~n~a~F 716 (1344)
-+|++.+||+.|++.-+. |.+.. +++|+.++|||++|-.-..-|
T Consensus 177 ~~G~~~rKa~~i~~~A~~-g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 177 ECGLSRRKAELIVEIAKE-ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HTTCCHHHHHHHHHHHTC-SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHC-CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 489999999999998866 55442 788999999999997776665
No 246
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=56.42 E-value=44 Score=28.77 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=37.7
Q ss_pred EEEEEEEEec---ccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEe
Q 039337 850 VQATVRRVQG---QRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQ 906 (1344)
Q Consensus 850 V~g~V~~V~~---~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD 906 (1344)
.+|+|+...+ || |+.-+.|-+=++|+|.|... -...+..||.|...|..-+
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~-----g~~~l~~G~~V~f~~~~~~ 55 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYG-FIEVEGGSDVFVHFTAIQGE-----GFKTLEEGQEVSFEIVQGN 55 (66)
T ss_dssp EEEEEEEEETTTTEE-EEEETTEEEEEEEGGGBCSS-----SCCCCCTTCEEEEEEEEET
T ss_pred CceEEEEEECCCCeE-EEecCCCccEEEEHHHcccc-----CCCCCCCCCEEEEEEEECC
Confidence 3689988753 55 66666678899999998764 1235789999999887543
No 247
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=55.17 E-value=18 Score=40.38 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=46.0
Q ss_pred hHHHHHHH-hhCcccccC-CHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCC
Q 039337 1060 LVSHLKAM-LSYRKFRKG-SKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTN 1119 (1344)
Q Consensus 1060 m~~~v~~i-~~h~kf~~g-~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~ 1119 (1344)
+.++...+ ++|+-|..- |-+||.+.|..+..+ --.|.|=+|--.||.|-++|+.+.+
T Consensus 217 lL~nw~~lav~hpGy~aFlTydEV~~~L~~~~~K---pGsYIfR~ScTrlGqwAIgYV~s~g 275 (323)
T 3op0_A 217 LLKNWQLLAVNHPGYMAFLTYDEVQERLQACRDK---PGSYIFRPSCTRLGQWAIGYVSSDG 275 (323)
T ss_dssp HHHHHHHHTTTCTTBCTTCCHHHHHHHTTGGGGS---TTEEEEEECSSSTTCEEEEEECTTS
T ss_pred HhhhHHHHhhcCcceeeeeeHHHHHHHHHHhccC---CCcEEEEeccCccCceEEEEEcCCC
Confidence 35666777 899999853 689999999766653 3469999999999999999998743
No 248
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=54.78 E-value=15 Score=49.06 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=50.9
Q ss_pred cccccccccccccc-----cccccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhc---cCCCHHHHHhcc
Q 039337 649 TNQVGLDINLAIHR-----EWQFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTA---HGLGKKVFVNAV 714 (1344)
Q Consensus 649 vn~vGVdiN~A~~~-----~~~~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v---~~iG~kvf~n~a 714 (1344)
+.-..+|||....+ ....--|.-|.|||..-|++|++.|+++|+|+|..|+..- ..+.+++.+.++
T Consensus 866 i~vlppdIN~S~~~f~v~~~~Ir~GL~aIkgvg~~~~~~Iv~~R~~~g~f~sl~Df~~Rv~~~~~nk~~le~Li 939 (1220)
T 2hpi_A 866 IPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLV 939 (1220)
T ss_dssp CCEECCCTTTCCSSCEEETTEEECCSTTSSSCCHHHHHHHHHHHHHSCSCCSHHHHHHHSCTTTSCHHHHHHHH
T ss_pred CeeCCCceeecCCccEEeCCeeeehhhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHHhccccCCCHHHHHHHH
Confidence 34456889976542 1122457889999999999999999999999999999653 458899888775
No 249
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=51.10 E-value=87 Score=33.39 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCeEEEE--cCCCcchhhhHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCC
Q 039337 511 ERLLKFMMDHQPHVVVL--GAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPG 588 (1344)
Q Consensus 511 ~~l~~~i~~~~p~vIaI--G~~t~s~~~l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~ 588 (1344)
+.|.+.+.+++||+|++ +.....+. ..+.+++..+.+...+ .++++++.=.....=|.. .-=.+
T Consensus 133 e~iv~~~~~~~~d~v~l~~S~l~~~~~---~~~~~~i~~l~~~~~~------~~v~v~vGG~~~~~~~a~-----~iGad 198 (215)
T 3ezx_A 133 ENVVEEAAKHKGEKVLLVGSALMTTSM---LGQKDLMDRLNEEKLR------DSVKCMFGGAPVSDKWIE-----EIGAD 198 (215)
T ss_dssp HHHHHHHHHTTTSCEEEEEECSSHHHH---THHHHHHHHHHHTTCG------GGSEEEEESSSCCHHHHH-----HHTCC
T ss_pred HHHHHHHHHcCCCEEEEEchhcccCcH---HHHHHHHHHHHHcCCC------CCCEEEEECCCCCHHHHH-----HhCCe
Confidence 57888899999999999 66554432 2455666666543221 247777754444433322 11122
Q ss_pred -CchhhHHHHHhhhhh
Q 039337 589 -QKGNVKRAVALGRYL 603 (1344)
Q Consensus 589 -~~~~~R~avslaR~l 603 (1344)
+-.....||.+|+++
T Consensus 199 ~~~~dA~~av~~a~~l 214 (215)
T 3ezx_A 199 ATAENAAEAAKVALEV 214 (215)
T ss_dssp BCCSSHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHh
Confidence 334566788888775
No 250
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=51.06 E-value=51 Score=29.05 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=37.9
Q ss_pred EEEEEEEEec---ccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEe
Q 039337 850 VQATVRRVQG---QRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQ 906 (1344)
Q Consensus 850 V~g~V~~V~~---~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD 906 (1344)
.+|+|+...+ || |+.-+.|-+=|+|+|.|... -...+..||.|...|..-+
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~-----g~~~l~~G~~V~f~~~~~~ 55 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYG-FIEREGDTDVFVHYTAINAK-----GFRTLNEGDIVTFDVEPGR 55 (73)
T ss_dssp EEEEEEEEETTTTEE-EEECTTSCCEEEEGGGBCSS-----SCSSCCTTCEEEEEEECCS
T ss_pred CCEEEEEEECCCCEE-EEecCCCCcEEEEhhhcccc-----CCCCCCCCCEEEEEEEECC
Confidence 3689988753 55 66666678899999998764 1235789999998886544
No 251
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=50.65 E-value=56 Score=28.59 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=38.0
Q ss_pred EEEEEEEEEec---ccEEEEeCCC-eEEEEeceecCCCccccCcccccCCCCEEEEEEEEEe
Q 039337 849 VVQATVRRVQG---QRAICVLESG-LAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQ 906 (1344)
Q Consensus 849 iV~g~V~~V~~---~g~fV~L~~g-i~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD 906 (1344)
.+.|+|+...+ || |+.-+.| -+=++|++.|... ....+..||.|...|..-+
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~-----g~~~l~~G~~V~f~~~~~~ 60 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTN-----GFKTLAEGQRVEFEITNGA 60 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCS-----SCCCCCTTCEEEEEEEEET
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHcccc-----cCcCCCCCCEEEEEEEECC
Confidence 35799998853 56 5555544 7899999998764 2235789999999887643
No 252
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=50.51 E-value=7.2 Score=42.49 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=34.8
Q ss_pred hccCCCHHHHHHHHHHHHh--cCC-----C------CCHHHHhhccCCCHHHHHhccCc
Q 039337 671 FISGLGPRKAASLQRSLVR--AGA-----I------FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 671 ~v~GlGprkA~~ii~~r~~--~g~-----~------~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
.-+|++.+||+.|++..+. .|. + ..+++|+.++|||++|-.-...|
T Consensus 99 r~~G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 99 RQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3479999999999887653 332 2 46788999999999996665554
No 253
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=49.65 E-value=42 Score=40.28 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=64.5
Q ss_pred HHHhhhHHHHHHHhhCccccc-CCHHHHHHHHHHHHHhCCCcceEEEEeCCCCCcEEEEEEecCCCCceeeEEEecCceE
Q 039337 1055 RYIDPLVSHLKAMLSYRKFRK-GSKAEVDELLRIEKAEFPTRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFK 1133 (1344)
Q Consensus 1055 ~~V~pm~~~v~~i~~h~kf~~-g~~~e~e~~L~~~~~~np~~i~Y~f~~~~~~PG~f~L~~~~~~~~~~e~i~v~p~gf~ 1133 (1344)
+||+++ ..+-.++.|.. -++++++++|.. ++ --.|-.-.+...||.|.|+......++|--|.-..+|..
T Consensus 94 ~yv~~~----~~le~~~wyhg~i~r~~ae~ll~~----~~-~G~fLvR~s~~~~~~~~lsv~~~~~v~h~~I~~~~~g~~ 164 (495)
T 1opk_A 94 NYITPV----NSLEKHSWYHGPVSRNAAEYLLSS----GI-NGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKL 164 (495)
T ss_dssp GGEEES----SSGGGSTTEEEECCHHHHHHHGGG----CC-TTEEEEEECSSSTTCEEEEEEETTEEEEEECEECTTSCE
T ss_pred cccccc----ccccchhhhccCCCHHHHHHHhhC----CC-CceEEEEeCCCCCCceEEEEeeCCeEEEEEEEecCCCce
Confidence 355553 23455666652 378999999942 32 355777778889999999999887777777777777766
Q ss_pred Ec--ccccccHHHHHHHHHhh
Q 039337 1134 FR--KRMFEDIDRLVAYFQRH 1152 (1344)
Q Consensus 1134 ~~--~~~~~~~~~L~~~fK~~ 1152 (1344)
|- ...|+++.+|+.++...
T Consensus 165 ~~~~~~~F~sl~eLv~~~~~~ 185 (495)
T 1opk_A 165 YVSSESRFNTLAELVHHHSTV 185 (495)
T ss_dssp ESSTTSCBSSHHHHHHHHTTC
T ss_pred EeccCccchhHHHHhhhhccc
Confidence 54 67899999999997643
No 254
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=49.27 E-value=7.2 Score=34.07 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.9
Q ss_pred cchhhccCCCHHHHHHHHHHHHh
Q 039337 667 APLQFISGLGPRKAASLQRSLVR 689 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~ 689 (1344)
..|..|+|||+++|..|+.+++.
T Consensus 46 ~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 46 AELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhC
Confidence 58999999999999999999864
No 255
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=48.83 E-value=9.7 Score=41.24 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=35.4
Q ss_pred hccCCCHHHHHHHHHHHHh--cCCC--C---------CHHHHhhccCCCHHHHHhccCc
Q 039337 671 FISGLGPRKAASLQRSLVR--AGAI--F---------TRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 671 ~v~GlGprkA~~ii~~r~~--~g~~--~---------sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
.-+|++.+||+.|++.-+. .|.+ . .+++|+.++|||++|-.-..-|
T Consensus 107 r~~G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 107 RGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3489999999999887754 4544 1 1788999999999997665554
No 256
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=54.41 E-value=3.7 Score=43.31 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=4.6
Q ss_pred ccHHHHHHHHH
Q 039337 1140 EDIDRLVAYFQ 1150 (1344)
Q Consensus 1140 ~~~~~L~~~fK 1150 (1344)
.+|.+|++--|
T Consensus 79 KDM~ELIsaMK 89 (215)
T 2l6f_A 79 SDLAELINKMK 89 (215)
Confidence 34444444433
No 257
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=48.77 E-value=8.7 Score=44.60 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=41.2
Q ss_pred cccccchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHHHHh
Q 039337 663 EWQFAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVN 712 (1344)
Q Consensus 663 ~~~~~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kvf~n 712 (1344)
|+.-.+|+.||.|||..|++|+++... +=.=.|.+||.+|.|||++.-..
T Consensus 311 prGyRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~ 362 (377)
T 3c1y_A 311 ARGYRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARA 362 (377)
T ss_dssp CCSHHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHH
T ss_pred chHHHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHH
Confidence 777789999999999999999998743 22346789999999999986544
No 258
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=48.54 E-value=3.3 Score=42.59 Aligned_cols=49 Identities=18% Similarity=0.084 Sum_probs=37.4
Q ss_pred cchhhccCCC--HHHHHHHHHHHHhcCCCCCHHHHhhccCCCHHHHHhccCc
Q 039337 667 APLQFISGLG--PRKAASLQRSLVRAGAIFTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 667 ~~Lq~v~GlG--prkA~~ii~~r~~~g~~~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
.++..+.|+| .+||+.|++.-+. -.-.++++|++++|+|+++-.-.+.|
T Consensus 73 el~~~i~~lG~y~~KAk~i~~~a~~-~vp~~~~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 73 DVSELLKPLGLYDLRAKTIVKFSDE-YLTKQWKYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHH-HHHSCCSSGGGSTTCCHHHHHHHHHH
T ss_pred hHHhHhhhcCCHHHHHHHHHHHhCC-cCCCChhhhhcCCCchHHHHHHHHHH
Confidence 6777888888 6899999886532 13467899999999999987655444
No 259
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=47.48 E-value=65 Score=29.61 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=43.3
Q ss_pred ccccCCeEEEEEEEEEec-ccEEEEeCCC-eEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeC
Q 039337 842 DTLAEGRVVQATVRRVQG-QRAICVLESG-LAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQK 907 (1344)
Q Consensus 842 ~~l~~G~iV~g~V~~V~~-~g~fV~L~~g-i~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~ 907 (1344)
......+...|+|+.... || |+.-+.| -+=|+|++.|... ...+..||.|...|..-+.
T Consensus 11 ~~~s~~~~~~G~Vkwf~KGfG-FI~~ddgg~DVFvH~s~i~~~------~~~L~~G~~V~F~v~~~~k 71 (89)
T 1wfq_A 11 NGTSAALRETGVIEKLLTSYG-FIQCSERQARLFFHCSQYNGN------LQDLKVGDDVEFEVSSDRR 71 (89)
T ss_dssp CSSSCCCEEEEEEEEECSSEE-EEEETTTTEEEEEETTTCSSC------TTTCCTTCCEEEEEEECSS
T ss_pred CCCCcccccceEEEEEeCCee-EEecCCCCccEEEEhHHhhCc------cCCCCCCCEEEEEEEECCC
Confidence 344556788999998853 34 6666655 8999999998653 2468999999998876543
No 260
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=47.43 E-value=70 Score=29.39 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred CcccccCCeEEEEEEEEEecccEEEEe-CC-CeEEEEeceecCCC-ccccCcccccCCCCEEEEEEEEEeCCCcEEEE
Q 039337 840 TEDTLAEGRVVQATVRRVQGQRAICVL-ES-GLAGMLMKEDYSDD-WRDSELSDKLHEGDILTCKIKSIQKNRYQVFL 914 (1344)
Q Consensus 840 t~~~l~~G~iV~g~V~~V~~~g~fV~L-~~-gi~GlIh~s~lsd~-~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~L 914 (1344)
+.-+|.+|++.+|.|. +.+.-++|.| +- |.+++|--. ++-. ....+.++. -+|-+|+|+|+.+|.- .|++
T Consensus 26 ~~~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dY-vnv~~dr~~klkkk-LVGKtIkVqVIRvD~l--YIDV 98 (102)
T 1jjg_A 26 SAMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDY-LNYRQDTLDRLKER-LVGRVIKTRVVRADGL--YVDL 98 (102)
T ss_dssp CCCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTT-CCSSCCCCCHHHHH-HTTCEEEEEEEEECSS--EEEE
T ss_pred eccccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehh-hhhhHHHHHHHHHH-hcCceEEEEEEEeccE--EEEE
Confidence 4457889999999885 5666667877 33 799988422 2211 011122333 3699999999999975 5544
No 261
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=46.08 E-value=69 Score=28.67 Aligned_cols=56 Identities=7% Similarity=0.041 Sum_probs=38.7
Q ss_pred eEEEEEEEEEec---ccEEEEeC-CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEE
Q 039337 848 RVVQATVRRVQG---QRAICVLE-SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSI 905 (1344)
Q Consensus 848 ~iV~g~V~~V~~---~g~fV~L~-~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~i 905 (1344)
+.++|+|+...+ || |+.-+ .+-+=|+|+|.|... ....-...+..||.|...|..-
T Consensus 7 ~~~~G~Vkwfn~~kGfG-FI~~~~gg~DvFvH~s~i~~~-~~~~g~~~l~~G~~V~f~~~~~ 66 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYG-FINRNDTKEDVFVHQTAIKKN-NPRKYLRSVGDGETVEFDVVEG 66 (79)
T ss_dssp EEEEEEEEEEETTTTEE-EEEEGGGTEEEEEEGGGBCSC-CCSCCSCSCCSSCEEEEEEEEC
T ss_pred cccceEEEEEECCCCcE-EEecCCCCccEEEEhHHcccc-ccccccccCCCCCEEEEEEEEC
Confidence 457899998853 66 55544 468999999999764 1011124688999999888653
No 262
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=45.59 E-value=26 Score=30.26 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=35.8
Q ss_pred EEEEEEEec---ccEEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEE
Q 039337 851 QATVRRVQG---QRAICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKS 904 (1344)
Q Consensus 851 ~g~V~~V~~---~g~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~ 904 (1344)
+|+|+...+ || |+.-+.|-+=++|+|.+... .-..+.+||.|...+..
T Consensus 2 ~G~Vk~fn~~kGfG-FI~~~~g~dvFvH~s~i~~~-----g~~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYG-FITKDEGGDVFVHWSAIEME-----GFKTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEE-EEEETTSCBCBBCSSSSCCS-----SCCCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEE-EEecCCCceEEEEhHHcccc-----CCCCCCCCCEEEEEEEE
Confidence 588888753 55 66667778899999998764 12457899999988764
No 263
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=44.50 E-value=73 Score=27.55 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=36.6
Q ss_pred EEEEEEEec---ccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEe
Q 039337 851 QATVRRVQG---QRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQ 906 (1344)
Q Consensus 851 ~g~V~~V~~---~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD 906 (1344)
+|+|+...+ || |+.-+. +-+=++|+|.|... -...+..||.|...+..-+
T Consensus 3 ~G~Vk~fn~~kGfG-FI~~~~gg~dvFvH~s~i~~~-----g~~~l~~G~~V~f~~~~~~ 56 (67)
T 3cam_A 3 TGIVKWFNDAKGFG-FITPDEGGEDLFAHFSAINME-----GFKTLKEGQRVSFDVTTGP 56 (67)
T ss_dssp EEEEEEEETTTTEE-EEEETTSCCCEEEEGGGBCGG-----GGSSCCTTCEEEEEEEEET
T ss_pred CEEEEEEECCCCeE-EEecCCCCccEEEEHHHcccc-----CCCCCCCCCEEEEEEEECC
Confidence 688988743 56 555554 68999999998654 1246789999999887644
No 264
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=42.19 E-value=3.2e+02 Score=33.54 Aligned_cols=85 Identities=14% Similarity=0.236 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCeEEEEcCCCcchhhhHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHhhhcCCCC-
Q 039337 511 ERLLKFMMDHQPHVVVLGAVNLSCTSLKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRISSDQLPGQ- 589 (1344)
Q Consensus 511 ~~l~~~i~~~~p~vIaIG~~t~s~~~l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a~~e~p~~- 589 (1344)
+.|.+.+.+++|++|+++.....+. ..+.+++..+-+.. ..++|++.=-....-|...+.+. .+.+.
T Consensus 139 e~iv~aa~~~~~diVgLS~l~t~~~---~~m~~~i~~Lr~~g--------~~i~ViVGGa~~~~~~a~~~i~p-~~~GAD 206 (579)
T 3bul_A 139 EKILRTAKEVNADLIGLSGLITPSL---DEMVNVAKEMERQG--------FTIPLLIGGATTSKAHTAVKIEQ-NYSGPT 206 (579)
T ss_dssp HHHHHHHHHHTCSEEEEECCSTHHH---HHHHHHHHHHHHTT--------CCSCEEEESTTCCHHHHHHHTGG-GCSSCE
T ss_pred HHHHHHHHHcCCCEEEEEecCCCCH---HHHHHHHHHHHHcC--------CCCeEEEEccccchhhhhhhhhh-cccCCe
Confidence 5788889999999999998665442 34555665554422 24788887666666664322211 12222
Q ss_pred --chhhHHHHHhhhhhcccc
Q 039337 590 --KGNVKRAVALGRYLQNPL 607 (1344)
Q Consensus 590 --~~~~R~avslaR~lqdPl 607 (1344)
-.....||.+|..+.++.
T Consensus 207 ~ya~DA~~Av~~a~~l~~~~ 226 (579)
T 3bul_A 207 VYVQNASRTVGVVAALLSDT 226 (579)
T ss_dssp EECCSHHHHHHHHHHHTCTT
T ss_pred EEECCHHHHHHHHHHHhccc
Confidence 345677888888876653
No 265
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=40.00 E-value=12 Score=34.18 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.9
Q ss_pred cchhhccCCCHHHHHHHHHHHHh
Q 039337 667 APLQFISGLGPRKAASLQRSLVR 689 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~ 689 (1344)
..|..|+|||+++|+.|+.+++.
T Consensus 51 ~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 51 EDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHhCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999853
No 266
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=38.22 E-value=21 Score=38.34 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=33.3
Q ss_pred cCCCHHHHHHHHHHHHh-----cCCC-CCHHHHhhccCCCHHHHHhccCc
Q 039337 673 SGLGPRKAASLQRSLVR-----AGAI-FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 673 ~GlGprkA~~ii~~r~~-----~g~~-~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
.|+..+||+.|++.-+. +|.+ ..+++|+.++|||+++-.-...|
T Consensus 85 ~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 85 IGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHH
Confidence 46777899998776542 4554 56999999999999997665555
No 267
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=37.67 E-value=44 Score=29.62 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=35.9
Q ss_pred EEEEEEEec---ccEEEEeCCCeEEEEeceecC-CCccccCcccccCCCCEEEEEEEE
Q 039337 851 QATVRRVQG---QRAICVLESGLAGMLMKEDYS-DDWRDSELSDKLHEGDILTCKIKS 904 (1344)
Q Consensus 851 ~g~V~~V~~---~g~fV~L~~gi~GlIh~s~ls-d~~~~~~~~~~~~vGq~V~vkVi~ 904 (1344)
+|+|+...+ || |+.-+.|-+=|+|+|.|. .. .-..+..||.|...|..
T Consensus 2 ~G~Vkwfn~~KGfG-FI~~~dG~DvFvH~s~i~~~~-----g~~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 2 KGKVVSYLAAKKYG-FIQGDDGESYFLHFSELLDKK-----DEGKLVKGSMVHFDPTP 53 (74)
T ss_dssp EEEEEEEETTTTEE-EEEETTSCEECCCGGGSSCSG-----GGTTCCTTSEEEEEEEC
T ss_pred CEEEEEEECCCCEE-EEecCCCceEEEEhhhcccCC-----CCCCCCCCCEEEEEEEE
Confidence 688888753 55 666666788999999987 43 12467999999988864
No 268
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=37.15 E-value=67 Score=39.02 Aligned_cols=69 Identities=10% Similarity=0.172 Sum_probs=43.0
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEE--eccccccccc--hhhhhhhHHHHHHHHHHHHHhCC---eEEEEcCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLF--TGCLTLRSQN--VRDQQSKKNDQERLLKFMMDHQP---HVVVLGAV 530 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~--~~~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~~p---~vIaIG~~ 530 (1344)
.|||| |-|-+++|++++|.+|+++..-. ...+++++.- ..+..-.....+.+.+++.+..+ +|.+||-.
T Consensus 5 YvlgI--D~GTss~Ka~l~d~~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~I~aIgis 80 (526)
T 3ezw_A 5 YIVAL--DQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGIT 80 (526)
T ss_dssp EEEEE--EECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred EEEEE--EccccceeeeEEcCCCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEe
Confidence 58998 88989999999999999997432 2233333211 01222334445567777777653 36677653
No 269
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=37.15 E-value=9.1 Score=34.09 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.4
Q ss_pred cchhhccCCCHHHHHHHHHHH
Q 039337 667 APLQFISGLGPRKAASLQRSL 687 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r 687 (1344)
+.|..|+|||+++|+.|+++.
T Consensus 56 eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 56 EEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 270
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=36.04 E-value=46 Score=29.99 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=40.5
Q ss_pred EEEEEEEEEeccc-EEEEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEE
Q 039337 849 VVQATVRRVQGQR-AICVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFL 914 (1344)
Q Consensus 849 iV~g~V~~V~~~g-~fV~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~L 914 (1344)
.++|+|....+.+ ..|.+++|..=++|++ .. +-+ -.-.+.+||.|.+.+..-|..+.+|..
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~---GK-~Rk-~~I~Il~GD~V~ve~~~yd~~kgrIi~ 76 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHIS---GK-MRQ-HYIRILPEDRVVVELSPYDLSRGRIVY 76 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEEC---HH-HHH-TTCCCCTTCEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeC---cc-eec-CCccCCCCCEEEEEECccCCCcEEEEE
Confidence 4689999998544 5688898866666654 21 111 012478999999988776666666654
No 271
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=35.71 E-value=12 Score=34.30 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.3
Q ss_pred cchhhccCCCHHHHHHHHHHHH
Q 039337 667 APLQFISGLGPRKAASLQRSLV 688 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~ 688 (1344)
..|..|+|||+++|+.|+.++.
T Consensus 64 ~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 64 EDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999984
No 272
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=35.30 E-value=26 Score=37.42 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCCC-CCHHHHhhccCCCHHHHHhccCc
Q 039337 674 GLGPRKAASLQRSLVR-----AGAI-FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 674 GlGprkA~~ii~~r~~-----~g~~-~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
|+..+||+.|.+.-+. +|.+ ..+++|+.++|||+++-.-...|
T Consensus 80 G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 80 GLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHH
Confidence 5666899998776542 3544 67999999999999996665555
No 273
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=35.20 E-value=24 Score=38.12 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=33.3
Q ss_pred cCCCHHHHHHHHHHHHh-----cCCC-CCHHHHhhccCCCHHHHHhccCc
Q 039337 673 SGLGPRKAASLQRSLVR-----AGAI-FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 673 ~GlGprkA~~ii~~r~~-----~g~~-~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
.|+..+||+.|++.-+. +|.+ ..+++|+.++|||++|-.-...|
T Consensus 83 ~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 83 IGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp GSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHH
Confidence 47777899998776542 3544 67999999999999986655554
No 274
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=35.18 E-value=79 Score=31.66 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=49.7
Q ss_pred CeEEEEEEEEEecccEE-EEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeCCCcEEEEEEeccc
Q 039337 847 GRVVQATVRRVQGQRAI-CVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQKNRYQVFLVCRESE 920 (1344)
Q Consensus 847 G~iV~g~V~~V~~~g~f-V~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~~~~~I~LSlk~~d 920 (1344)
-..+.|+|+.....+.| |.+.+|..-|+|++ .+ +-+ .-.+..||.|.|....-|..+.+|...++..+
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~---GK-mRk--~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~de 98 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR---GK-LRK--KVWINTSDIILVGLRDYQDNKADVILKYNADE 98 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECC---SG-GGG--SCCCCTTCEEEEECSSSSSSCCEEEEEECTTT
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEec---cc-cee--eEEecCCCEEEEeeccCCCCeEEEEEEeCHHH
Confidence 34578899998887754 67899999888865 32 222 33588999999988777777788877766544
No 275
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=33.45 E-value=16 Score=43.83 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=34.3
Q ss_pred eEeEeecCCCCCceEE-----EEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcCCCcch
Q 039337 460 RVLACCWGPGKPETTF-----VMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGAVNLSC 534 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~-----a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~t~s~ 534 (1344)
+||++....|..-++. .-++-.|...+++.... . +. ...=|.+.|.++.++++|.+|+.|++.-.+
T Consensus 146 ~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~v---d-----~~-t~~IDyd~~~~~A~~~kPklIi~G~SaY~r 216 (490)
T 3ou5_A 146 RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL---N-----PK-TGLIDYNQLALTARLFRPRLIIAGTSAYAR 216 (490)
T ss_dssp CEECBC----------------------------CBCE---E-----TT-TTEECHHHHHHHHHHHCCSEEEECCSSCCS
T ss_pred EEEecccCCCCcccccccCCCccccccccccccccccc---C-----CC-CCcccHHHHHHHHhhcCCCeEEECCccCcc
Confidence 7888866666522221 34566666655422111 0 00 001146788999999999999999987766
Q ss_pred hhhHHHHHHHHH
Q 039337 535 TSLKDDIYEIIF 546 (1344)
Q Consensus 535 ~~l~~~~~~~v~ 546 (1344)
.-=++.+.++..
T Consensus 217 ~id~~~~reIAd 228 (490)
T 3ou5_A 217 LIDYARMREVCD 228 (490)
T ss_dssp CCCHHHHHHHHH
T ss_pred ccCHHHHHHHHh
Confidence 443344444433
No 276
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.43 E-value=67 Score=30.83 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=48.1
Q ss_pred ccCCeEEEEEEEEEecccEE-EEeCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEe-CCCcEEEEEEeccc
Q 039337 844 LAEGRVVQATVRRVQGQRAI-CVLESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQ-KNRYQVFLVCRESE 920 (1344)
Q Consensus 844 l~~G~iV~g~V~~V~~~g~f-V~L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD-~~~~~I~LSlk~~d 920 (1344)
+..| .+.|+|+.....+.| |.+.+|..-++|++ .+ +-+ .-.+..||.|.|....-| ..+.+|...++..+
T Consensus 12 p~eg-e~~g~V~~~lgn~~f~V~l~nG~~~la~i~---GK-~Rk--~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~q 83 (111)
T 2dgy_A 12 PSNQ-QQIVRVLRTPGNNLHEVETAQGQRFLVSMP---SK-YRK--NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDH 83 (111)
T ss_dssp CCSS-CEEEEEEECCSSSEEEEECTTSCEEEEECC---TT-CCS--CCCCCSSCEEEEEECSSCSSCCEEEEEECCHHH
T ss_pred CCCC-eEEEEEEEeCCCCEEEEEeCCCCEEEEEec---hh-hcc--cEEEcCCCEEEEEecccCCcceEEEEEEeCHHH
Confidence 3344 467888888776654 67889998888865 33 221 335889999999877655 55677777666544
No 277
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=33.42 E-value=95 Score=35.03 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=23.6
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEE
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLF 489 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~ 489 (1344)
.+||| |-|.+.++++++|.+|+++....
T Consensus 7 ~~lgi--DiGgt~~~~~l~d~~g~i~~~~~ 34 (347)
T 2ch5_A 7 IYGGV--EGGGTRSEVLLVSEDGKILAEAD 34 (347)
T ss_dssp EEEEE--EECTTCEEEEEEETTSCEEEEEE
T ss_pred EEEEE--EcCccceEEEEEeCCCCEEEEEe
Confidence 57887 77888899999999999997644
No 278
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=32.85 E-value=79 Score=34.96 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=51.4
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHh---CCeEEEEcCCCcchhh
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDH---QPHVVVLGAVNLSCTS 536 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~p~vIaIG~~t~s~~~ 536 (1344)
.+||| |=|.+.++++++|.+|+++...+.... +. .....+...+.|.+.+.+. .+..|+||-.......
T Consensus 3 ~~lgi--DiGgt~~~~~l~d~~g~i~~~~~~~~~-----~~-~~~~~~~~~~~i~~~i~~~~~~~~~~igi~~~G~~~~~ 74 (299)
T 2e2o_A 3 IIVGV--DAGGTKTKAVAYDCEGNFIGEGSSGPG-----NY-HNVGLTRAIENIKEAVKIAAKGEADVVGMGVAGLDSKF 74 (299)
T ss_dssp CEEEE--EECSSCEEEEEECTTSCEEEEEEESCC-----CH-HHHCHHHHHHHHHHHHHHHHTSCCSEEEEEETTCCSHH
T ss_pred EEEEE--EeCCCcEEEEEEcCCCCEEEEEeCCCC-----Cc-ccCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCchh
Confidence 36787 777788999999999999976443221 00 0001122333444444332 1677777743333211
Q ss_pred hHHHHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHh
Q 039337 537 LKDDIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYE 577 (1344)
Q Consensus 537 l~~~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~ 577 (1344)
.+. -+.+.+++ + +++|.+.|+.-+..+.
T Consensus 75 ---~~~-~l~~~l~~--------~-~~pv~v~ND~~aaa~~ 102 (299)
T 2e2o_A 75 ---DWE-NFTPLASL--------I-APKVIIQHDGVIALFA 102 (299)
T ss_dssp ---HHH-HHHHHHTT--------S-SSEEEEEEHHHHHHHH
T ss_pred ---HHH-HHHHHHHh--------C-CCCEEEeCcHHHHHhh
Confidence 111 12223322 1 3788888887665554
No 279
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=30.16 E-value=81 Score=31.77 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=39.9
Q ss_pred CCeEEEEEEEEEec---ccEEEEeCCC-eEEEEeceecCCCccccCcccccCCCCEEEEEEEEE
Q 039337 846 EGRVVQATVRRVQG---QRAICVLESG-LAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSI 905 (1344)
Q Consensus 846 ~G~iV~g~V~~V~~---~g~fV~L~~g-i~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~i 905 (1344)
.|+.+.|+|+-..+ || |+.-+.| -+=|+|++.|... ..+..||.|.-.|...
T Consensus 59 ~g~m~~GtVKwFn~~KGfG-FI~~ddGg~DVFVH~Sai~~~-------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHG-FITPADGGPDIFLHISDVEGE-------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEE-EEEESSSCSCEEEEGGGEESS-------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeE-EeccCCCCccEEEEeeeecCC-------CcCCCCCEEEEEEEec
Confidence 57888999998843 66 5555544 8999999998533 2689999999988754
No 280
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=30.14 E-value=38 Score=39.29 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=38.8
Q ss_pred ccchhhccCCCHHHHHHHHHHHHh--cCCCCCHHHHhhccCCCHHHHHhccCc
Q 039337 666 FAPLQFISGLGPRKAASLQRSLVR--AGAIFTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 666 ~~~Lq~v~GlGprkA~~ii~~r~~--~g~~~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
-.+|.-||||||.+|+.|+++.-. .=.-.+.++|. +.|||++--..+.|.
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELR-edGIGekqarrI~gl 518 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELR-EDGLTDAQIRELKGL 518 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHH-HTTCCHHHHHHHHTC
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHH-HccccHHHHHHHhhH
Confidence 369999999999999999997621 00126778885 499999988887775
No 281
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=29.81 E-value=80 Score=28.90 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=39.7
Q ss_pred CCeEEEEEEEEEecccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEE
Q 039337 846 EGRVVQATVRRVQGQRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKS 904 (1344)
Q Consensus 846 ~G~iV~g~V~~V~~~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~ 904 (1344)
.++...|+|+...+..=|+.-+. +-+=|+|+|.|... ...+..||.|...|..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~------~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD------VDSLELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC------TTTCCTTCEEEECCCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc------cCcCCCCCEEEEEEEE
Confidence 46788999999875333676655 58999999988654 2468899999987653
No 282
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=29.36 E-value=27 Score=37.45 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=33.2
Q ss_pred cCCCHHHHHHHHHHHHh----cCC------CCCHHHHhhccCCCHHHHHhccCc
Q 039337 673 SGLGPRKAASLQRSLVR----AGA------IFTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 673 ~GlGprkA~~ii~~r~~----~g~------~~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
+|+..+||+.|.+..+. .+. -..|++|+.++|||+++-.-...|
T Consensus 87 ~G~~~~KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~ 140 (218)
T 1pu6_A 87 SGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCY 140 (218)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHH
Confidence 57888899999776542 222 357999999999999997766655
No 283
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=28.92 E-value=43 Score=35.99 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCC-CCHHHHhhccCCCHHHHHhccCc
Q 039337 674 GLGPRKAASLQRSLVR-----AGAI-FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 674 GlGprkA~~ii~~r~~-----~g~~-~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
|+. +||+.|++.-+. +|.+ .++++|+.++|||+++-.-...|
T Consensus 81 G~~-~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 81 GYY-ARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp CCT-HHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHH
T ss_pred ChH-HHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHH
Confidence 444 678777665432 4544 57999999999999996655554
No 284
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=28.85 E-value=24 Score=37.51 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.2
Q ss_pred ccccccccccccchhhccCCCHHHHHHHHHHHH
Q 039337 656 INLAIHREWQFAPLQFISGLGPRKAASLQRSLV 688 (1344)
Q Consensus 656 iN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~ 688 (1344)
|-.++. ..|..|||||+++|+.|+..++
T Consensus 102 I~~~d~-----~~L~~vpGIG~K~A~rI~~elk 129 (203)
T 1cuk_A 102 VEREEV-----GALVKLPGIGKKTAERLIVEMK 129 (203)
T ss_dssp HHTTCH-----HHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCH-----HHHhhCCCCCHHHHHHHHHHHH
Confidence 445555 6999999999999999998774
No 285
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=28.65 E-value=82 Score=34.84 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=21.8
Q ss_pred EeEeecCCCCCceEEEEECCCCCEEEEEE
Q 039337 461 VLACCWGPGKPETTFVMLDSSGEVVDVLF 489 (1344)
Q Consensus 461 Vlai~~dpg~~g~~~a~vd~~G~vld~~~ 489 (1344)
+||| |=|.|.|+++++| +|+++...+
T Consensus 2 ~lgi--DiGGT~~~~~l~d-~g~il~~~~ 27 (291)
T 1zbs_A 2 ILIG--DSGSTKTDWCIAK-EGKSLGRFQ 27 (291)
T ss_dssp EEEE--EECSSEEEEEEEE-TTEEEEEEE
T ss_pred EEEE--EeCccceEEEEEe-CCeEEEEEE
Confidence 5677 8888899999999 999997644
No 286
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=34.41 E-value=12 Score=32.80 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=36.5
Q ss_pred eEEEEEEEEEe---cccEEEEeCC-CeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEe
Q 039337 848 RVVQATVRRVQ---GQRAICVLES-GLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQ 906 (1344)
Q Consensus 848 ~iV~g~V~~V~---~~g~fV~L~~-gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD 906 (1344)
+.++|+|+... .|| |+.-+. +-+=++|+|.|... ....+..||.|...|..-+
T Consensus 3 ~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvFvH~s~i~~~-----g~~~l~~G~~V~f~~~~~~ 59 (70)
T 2lss_A 3 TNIVGKVKWYNSTKNFG-FIEQDNGGKDVFVHKSAVDAA-----GLHSLEEGQDVIFDLEEKQ 59 (70)
Confidence 34678888764 366 454444 57899999998754 1235788999988776443
No 287
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=28.30 E-value=24 Score=37.26 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=23.3
Q ss_pred ccccccccccccchhhccCCCHHHHHHHHHHHH
Q 039337 656 INLAIHREWQFAPLQFISGLGPRKAASLQRSLV 688 (1344)
Q Consensus 656 iN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~ 688 (1344)
|..++. ..|..|||||+++|+.|+..++
T Consensus 101 I~~~d~-----~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 101 LLEGDA-----RLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTCH-----HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHhCCH-----HHHHhCCCCCHHHHHHHHHHHH
Confidence 445555 6999999999999999998874
No 288
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=28.03 E-value=42 Score=37.64 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH----h-cCCC-CCHHHHhh-ccCCCHHHHHhccCc
Q 039337 678 RKAASLQRSLV----R-AGAI-FTRKDFVT-AHGLGKKVFVNAVGF 716 (1344)
Q Consensus 678 rkA~~ii~~r~----~-~g~~-~sr~~L~~-v~~iG~kvf~n~a~F 716 (1344)
+||+.|.+.-+ . +|.+ .++++|++ ++|||++|-.-...|
T Consensus 103 ~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 103 SRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 48888876543 2 4544 57999998 999999997766655
No 289
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=27.76 E-value=13 Score=46.13 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHHHhcCCC--CCHHHHhhccCCCHHHHHhccCcEEEec
Q 039337 672 ISGLGPRKAASLQRSLVRAGAI--FTRKDFVTAHGLGKKVFVNAVGFLRVRR 721 (1344)
Q Consensus 672 v~GlGprkA~~ii~~r~~~g~~--~sr~~L~~v~~iG~kvf~n~a~FlrI~~ 721 (1344)
|+|+|+..|+.|.++...--.+ .+.++|..++|||+++-++...|+.-+.
T Consensus 534 Ip~VG~~~ak~La~~Fgsle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~ 585 (615)
T 3sgi_A 534 IRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDW 585 (615)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHH
Confidence 6788888999888765331222 3568899999999999999999986654
No 290
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=27.71 E-value=95 Score=37.45 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=40.4
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEecc--ccccccc--hhhhhhhHHHHHHHHHHHHHhCCeEEEEcCCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGC--LTLRSQN--VRDQQSKKNDQERLLKFMMDHQPHVVVLGAVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~--~~~~~~~--~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~~t 531 (1344)
.+||| |-|.+.+|++++|.+|+++....... .++...- ..+..-.+.-.+.+.+++.+...+|.+||-++
T Consensus 5 ~~lgI--DiGtts~K~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~I~~Igis~ 78 (504)
T 3ll3_A 5 YIIGM--DVGTTATKGVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKIDGKIAAISWSS 78 (504)
T ss_dssp EEEEE--EECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCSSEEEEEEEEE
T ss_pred EEEEE--EecCCceEEEEEcCCCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEC
Confidence 58888 88989999999999999997543322 2222110 01112222333445555555445666666544
No 291
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=27.55 E-value=43 Score=37.15 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=21.2
Q ss_pred EeEeecCCCCCceEEEEECCCCCEEEEEEe
Q 039337 461 VLACCWGPGKPETTFVMLDSSGEVVDVLFT 490 (1344)
Q Consensus 461 Vlai~~dpg~~g~~~a~vd~~G~vld~~~~ 490 (1344)
++|| |=|.|.|+++++| +|+++...+.
T Consensus 2 ~lgi--DiGGT~i~~~l~d-~g~il~~~~~ 28 (291)
T 1zxo_A 2 ILIA--DSGSTKTDWCVVL-NGAVIKRLGT 28 (291)
T ss_dssp --CE--ECCTTCEEEEEEC-SSSEEEEEEE
T ss_pred EEEE--EeccccEEEEEEc-CCeEEEEEEC
Confidence 5676 8888999999999 9999976543
No 292
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.50 E-value=1.4e+02 Score=29.94 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=39.5
Q ss_pred eEEEEEEEEEec---ccEEEEeC--------CCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeC
Q 039337 848 RVVQATVRRVQG---QRAICVLE--------SGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQK 907 (1344)
Q Consensus 848 ~iV~g~V~~V~~---~g~fV~L~--------~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~ 907 (1344)
+.++|+|+-... || ||.-+ .+.+-|||++.|.... ...+..||.|...|..-+.
T Consensus 8 ~~~~G~Vkwfn~~kGfG-FI~~~~~~g~p~~~g~DvFvH~s~i~~~g-----~~~l~eG~~V~f~~~~g~k 72 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFG-FLSMTARAGVALDPPVDVFVHQSKLHMEG-----FRSLKEGEAVEFTFKKSAK 72 (148)
T ss_dssp EEEEEEEEEEETTTTEE-EEEEEEETTEEEEEEEEEEEEGGGBCSSS-----SCCCCTTCEEEEEEEEETT
T ss_pred ccceeEEEEEECCCCee-EEeeCccccccCCCCccEEEEhHHhcccC-----CccCCCCCEEEEEEEEccc
Confidence 557899998853 56 55433 4678999999986541 2367899999999887654
No 293
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=27.25 E-value=26 Score=40.21 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.8
Q ss_pred cchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhh
Q 039337 667 APLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVT 701 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~ 701 (1344)
.+|..|+||||++|+.+.+ + .++|.+||..
T Consensus 98 ~~l~~V~GiGpk~a~~l~~---~--Gi~tledL~~ 127 (335)
T 2fmp_A 98 NFLTRVSGIGPSAARKFVD---E--GIKTLEDLRK 127 (335)
T ss_dssp HHHTTSTTCCHHHHHHHHH---T--TCCSHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHH---c--CCCCHHHHHH
Confidence 5789999999999999943 3 6999999986
No 294
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=27.15 E-value=1.1e+02 Score=36.55 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.1
Q ss_pred EeEeecCCCCCceEEEEECCCCCEEEEEE
Q 039337 461 VLACCWGPGKPETTFVMLDSSGEVVDVLF 489 (1344)
Q Consensus 461 Vlai~~dpg~~g~~~a~vd~~G~vld~~~ 489 (1344)
+||| |-|.+.+|++++|.+|+++..-.
T Consensus 2 ~lgi--DiGtt~~k~~l~d~~g~~l~~~~ 28 (484)
T 2itm_A 2 YIGI--DLGTSGVKVILLNEQGEVVAAQT 28 (484)
T ss_dssp EEEE--EECSSEEEEEEECTTSCEEEEEE
T ss_pred EEEE--EecCcccEEEEECCCCCEEEEEE
Confidence 5777 88989999999999999997643
No 295
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=27.01 E-value=55 Score=40.90 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCHHHHHHHhhcCCCCcEEEecCCC-CCCceEEEEEEeC
Q 039337 974 VTADEAMKLLSAKEPGESIIRPSSR-GPSYLTLTLKVYD 1011 (1344)
Q Consensus 974 ~~~~qAe~~L~~~~~Gd~viRPSSk-G~d~L~vTwKv~d 1011 (1344)
|+-.+|+.+|.+++.|.+++|-|.. -...||++|.-.+
T Consensus 582 IsK~~a~~lL~~~~~GTFLLRFSdS~~~Ggitia~V~~~ 620 (683)
T 1yvl_A 582 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERS 620 (683)
T ss_dssp CCHHHHHHHHSSSCSSCEEEEECSSCSSCEEEEEEEECC
T ss_pred ecHHHHHHHHhCCCCCeEEEecCCCCCCCceEEEEEecc
Confidence 7888999999999999999999977 7899999998855
No 296
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=26.66 E-value=41 Score=41.45 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=18.6
Q ss_pred cchhhccCCCHHHHHHHHHHHHh
Q 039337 667 APLQFISGLGPRKAASLQRSLVR 689 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~ 689 (1344)
..|..+.|+|++.|++|++.+++
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~ 502 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEK 502 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHhcccCccHHHHHHHHHHHHH
Confidence 56778888888888888888764
No 297
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=26.20 E-value=2.5e+02 Score=32.44 Aligned_cols=88 Identities=23% Similarity=0.175 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCeEEEEcCCCcc-------hhhhHH-HHHHHHHHHHhhCCCCcCCCCCcceEEEecCCCchHHhhhHHh
Q 039337 511 ERLLKFMMDHQPHVVVLGAVNLS-------CTSLKD-DIYEIIFKMVEEHPRDVGHEMDELSIVYGDESLPRLYENSRIS 582 (1344)
Q Consensus 511 ~~l~~~i~~~~p~vIaIG~~t~s-------~~~l~~-~~~~~v~~~~~~~~~~~~~~~~~i~v~~v~~~~a~vy~~s~~a 582 (1344)
..|...+..++|++|+|.+|.-+ +..|.. ....++. .+.+. .++++++-+-|=.+-..++..
T Consensus 237 ~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~-~~~~~---------~~p~v~~~eGGY~~~~var~w 306 (367)
T 3max_A 237 PIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVE-VVKTF---------NLPLLMLGGGGYTIRNVARCW 306 (367)
T ss_dssp HHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHH-HHHTT---------CCCEEEECCCCCSHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHH-HHHhc---------CCCEEEEeCCCCChhHHHHHH
Confidence 44667889999999999987622 222332 2233332 33321 468888888876654433221
Q ss_pred hhcCCCCchhhHHHHHhhhhhc--ccceehhcccCCC
Q 039337 583 SDQLPGQKGNVKRAVALGRYLQ--NPLAMVATLCGPG 617 (1344)
Q Consensus 583 ~~e~p~~~~~~R~avslaR~lq--dPl~e~~~l~~~~ 617 (1344)
+...|+.+++.+. .|..+|-..++|+
T Consensus 307 ---------t~~ta~~~~~~i~~~~p~~~~~~~~~p~ 334 (367)
T 3max_A 307 ---------TYETAVALDCEIPNELPYNDYFEYFGPD 334 (367)
T ss_dssp ---------HHHHHHHTTCCCCSBCCCCTTGGGGTTT
T ss_pred ---------HHHHHHHhhcccccCCCchhhHHhhCCC
Confidence 3334666666666 5777888877763
No 298
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=26.02 E-value=18 Score=39.00 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHh---------cCCCCCHHHHh-hccCCCHHHHHhccCc
Q 039337 675 LGPRKAASLQRSLVR---------AGAIFTRKDFV-TAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 675 lGprkA~~ii~~r~~---------~g~~~sr~~L~-~v~~iG~kvf~n~a~F 716 (1344)
+..+||+.|.+..+. ......|++|+ +++|||+|+-.-...|
T Consensus 98 f~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 98 YPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp SHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 556677777665432 22346789999 9999999986554444
No 299
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=25.82 E-value=37 Score=41.48 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCHHHHHHHhhcCCCCcEEEecCCC-CCCceEEEEEEeC
Q 039337 974 VTADEAMKLLSAKEPGESIIRPSSR-GPSYLTLTLKVYD 1011 (1344)
Q Consensus 974 ~~~~qAe~~L~~~~~Gd~viRPSSk-G~d~L~vTwKv~d 1011 (1344)
|+-.+|+.+|.+++.|.+++|-|.. -...|||+|.-.+
T Consensus 447 IsK~~a~~lL~~~~~GTFLLRFSdS~~~GgITia~V~~~ 485 (575)
T 1bf5_A 447 ISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERS 485 (575)
T ss_dssp CCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEEECCCC
T ss_pred ecHHHHHHHHhCCCCCeEEEecCCCCCCCcEEEEEEecC
Confidence 6889999999999999999999998 8999999997754
No 300
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=25.69 E-value=49 Score=36.89 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=34.6
Q ss_pred hccCCCHHHHHHHHHHHHh--cCCC-----CC----HHHHhhccCCCHHHHHhccCc
Q 039337 671 FISGLGPRKAASLQRSLVR--AGAI-----FT----RKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 671 ~v~GlGprkA~~ii~~r~~--~g~~-----~s----r~~L~~v~~iG~kvf~n~a~F 716 (1344)
.-+|+-.+||+.|++.-+. .|.+ .+ +++|+.++|||++|-.-..-|
T Consensus 170 r~~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 170 KALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 3478889999999877653 3322 23 889999999999997766655
No 301
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=25.36 E-value=95 Score=34.71 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=40.9
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGA 529 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~ 529 (1344)
.++|| |=|.+.++++++|.+|+++...+... . ..++..+.+.+++.++++.-|+||-
T Consensus 4 ~~lgi--DiGgt~i~~~l~d~~G~il~~~~~~t---~--------~~~~~l~~i~~~~~~~~i~gigi~~ 60 (302)
T 3epq_A 4 MLGGI--EAGGTXFVCAVGREDGTIIDRIEFPT---X--------MPDETIEXVIQYFSQFSLQAIGIGS 60 (302)
T ss_dssp CEEEE--EECSSEEEEEEECTTSCEEEEEEEEC---C--------CHHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred EEEEE--EECcceeEEEEEECCCcEEEEEEecC---C--------ChHHHHHHHHHHhccCCceEEEEEe
Confidence 47787 66777899999999999998644322 1 0134466777888877888888874
No 302
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=25.33 E-value=75 Score=34.70 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=24.3
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEe
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFT 490 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~ 490 (1344)
.+||| |-|.+-|++|++|++|+++...+.
T Consensus 2 ~~lGI--D~GsT~tk~av~d~~~~il~~~~~ 30 (276)
T 4ehu_A 2 YTMGL--DIGSTASKGVILKNGEDIVASETI 30 (276)
T ss_dssp EEEEE--EECSSCEEEEEEETTTEEEEEEEE
T ss_pred eEEEE--EcCccEEEEEEEECCCeEEEEEEe
Confidence 47898 888888999999999999976443
No 303
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=25.11 E-value=2.1e+02 Score=26.30 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=37.5
Q ss_pred eEEEEEEEEEe---cccEEEE--------eCCCeEEEEeceecCCCccccCcccccCCCCEEEEEEEEEeC
Q 039337 848 RVVQATVRRVQ---GQRAICV--------LESGLAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSIQK 907 (1344)
Q Consensus 848 ~iV~g~V~~V~---~~g~fV~--------L~~gi~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~iD~ 907 (1344)
+..+|+|+-.. .|| ||. .+.+.+=|||.|.|....+ ..+..||.|...|..=+.
T Consensus 7 ~r~tG~VKWFn~~KGfG-FI~~~~~~~~p~dgg~DvFVH~s~i~~~g~-----~~L~eG~~V~f~v~~g~k 71 (90)
T 3ulj_A 7 LRGSGHCKWFNVRMGFG-FISMTSREGSPLENPVDVFVHQSKLYMEGF-----RSLKEGEPVEFTFKKSSK 71 (90)
T ss_dssp EEEEEEEEEEETTTTEE-EEEEEEETTEEEEEEEEEEEEGGGBCCSSS-----CCCCTTCEEEEEEEEETT
T ss_pred cccceEEEEeeCCCCeE-EeEecCcCcCCCCCCccEEEEeehhcccCC-----CccCCCCEEEEEEEECCC
Confidence 35689998764 355 443 2445688999999865411 357899999998876543
No 304
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=24.74 E-value=1e+02 Score=37.08 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.9
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEE
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLF 489 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~ 489 (1344)
.+||| |-|.+.+|++++|.+|+++....
T Consensus 5 ~~lgI--DiGtT~~k~~l~d~~g~i~~~~~ 32 (503)
T 2w40_A 5 VILSI--DQSTQSTKVFFYDEELNIVHSNN 32 (503)
T ss_dssp EEEEE--EECSSEEEEEEEETTCCEEEEEE
T ss_pred EEEEE--EeCCcceEEEEECCCCCEEEEEE
Confidence 47887 88999999999999999997533
No 305
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=24.71 E-value=39 Score=42.38 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=32.9
Q ss_pred cchhhccCCCHHHHHHHHHHHHhcCCCCCHHHH---hhccCCCHHHHHhccC
Q 039337 667 APLQFISGLGPRKAASLQRSLVRAGAIFTRKDF---VTAHGLGKKVFVNAVG 715 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L---~~v~~iG~kvf~n~a~ 715 (1344)
..|..++|+|+++|++|++.++..... +-..+ +.++++|+++-...+.
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~-~l~R~L~algi~~VG~~~Ak~La~ 530 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKET-TFARFLYALGIREVGEATAAGLAA 530 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBC-CHHHHHHHTTCTTCCHHHHHHHHH
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcC-ChhheehhhcccCccHHHHHHHHH
Confidence 467788999999999999988753221 22222 2578889877666653
No 306
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=24.43 E-value=96 Score=37.44 Aligned_cols=70 Identities=13% Similarity=0.027 Sum_probs=40.3
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEecc--cccccc--chhhhhhhHHHHHHHHHHHHHhC---CeEEEEcCCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGC--LTLRSQ--NVRDQQSKKNDQERLLKFMMDHQ---PHVVVLGAVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~--~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~---p~vIaIG~~t 531 (1344)
.|||| |-|.+.+|++++|.+|+++...+... .++... ...+..-.+.-.+.+.+++.+.. -+|.+||-++
T Consensus 8 ~~lgI--DiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~ 84 (508)
T 3ifr_A 8 QVIGL--DIGTTSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTG 84 (508)
T ss_dssp EEEEE--EECSSEEEEEEEETTTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEEE
T ss_pred EEEEE--EecCcceEEEEECCCCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEC
Confidence 68898 88889999999999999997533222 222211 00112222333444566665532 3466666544
No 307
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=24.14 E-value=1.3e+02 Score=36.05 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=23.4
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEE
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDV 487 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~ 487 (1344)
.|||| |-|.+.+|++++|.+|+++..
T Consensus 7 ~~lgI--DiGtts~k~~l~d~~G~il~~ 32 (501)
T 3g25_A 7 YILSI--DQGTTSSRAILFNQKGEIAGV 32 (501)
T ss_dssp EEEEE--EECSSEEEEEEECTTSCEEEE
T ss_pred EEEEE--EeCccceEEEEEcCCCCEEEE
Confidence 58888 888899999999999999975
No 308
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=23.92 E-value=1.3e+02 Score=36.27 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=40.8
Q ss_pred ceEeEeecCCCCCceEEEEECCCCCEEEEEEec--ccccccc--chhhhhhhHHHHHHHHHHHHHhC---CeEEEEcCCC
Q 039337 459 PRVLACCWGPGKPETTFVMLDSSGEVVDVLFTG--CLTLRSQ--NVRDQQSKKNDQERLLKFMMDHQ---PHVVVLGAVN 531 (1344)
Q Consensus 459 ~rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~---p~vIaIG~~t 531 (1344)
..|||| |-|.+.+|++++|.+|+++...... ..++... ...+..-.+.-.+.+.+++.+.. -+|.+||-++
T Consensus 26 ~~~lgI--DiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~~I~~Igis~ 103 (520)
T 4e1j_A 26 GYILAI--DQGTTSTRAIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITANDIAAIGITN 103 (520)
T ss_dssp CEEEEE--EECSSEEEEEEECTTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEE
T ss_pred CeEEEE--EeCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEeC
Confidence 368888 8888999999999999999753322 2222211 00112222333444556665533 2466666544
No 309
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=23.82 E-value=1.2e+02 Score=36.62 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=40.9
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEec--ccccccc--chhhhhhhHHHHHHHHHHHHHhC---CeEEEEcCCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTG--CLTLRSQ--NVRDQQSKKNDQERLLKFMMDHQ---PHVVVLGAVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~---p~vIaIG~~t 531 (1344)
.|||| |-|.+.+|++++|.+|+++...... ..++... ...+..-.+.-.+.+.+++.+.. -+|.+||-++
T Consensus 4 ~~lgI--DiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 80 (510)
T 2p3r_A 4 YIVAL--DQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITN 80 (510)
T ss_dssp EEEEE--EECSSEEEEEEECTTCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred EEEEE--EcCCcceEEEEECCCCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEEeC
Confidence 58888 8888999999999999999753322 2222211 00112222333444566666543 2466666544
No 310
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=23.69 E-value=20 Score=38.57 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHH------h-c---CCCCCHHHHh-hccCCCHHHHHh
Q 039337 675 LGPRKAASLQRSLV------R-A---GAIFTRKDFV-TAHGLGKKVFVN 712 (1344)
Q Consensus 675 lGprkA~~ii~~r~------~-~---g~~~sr~~L~-~v~~iG~kvf~n 712 (1344)
+-.+||+.|++..+ . + .....|++|+ +++|+|+|+-.-
T Consensus 92 f~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~ 140 (214)
T 3fhf_A 92 FYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASH 140 (214)
T ss_dssp THHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHH
Confidence 66778888776554 1 1 2346789999 999999987543
No 311
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=23.64 E-value=45 Score=29.93 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=36.4
Q ss_pred eEEEEEEEEEecccEEEEeCCC--eEEEEeceecCCCccccCcccccCCCCEEEEEEEEE
Q 039337 848 RVVQATVRRVQGQRAICVLESG--LAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKSI 905 (1344)
Q Consensus 848 ~iV~g~V~~V~~~g~fV~L~~g--i~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~i 905 (1344)
+...|+|..+....=|+.-+.| -+=|+|++.|. . . ..++.||.|...|..-
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~-~----g--~~l~~G~~V~F~v~~~ 59 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ-D----G--IELQAGDEVEFSVILN 59 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCC-S----S--CCCCTTCEEECBCEEC
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcC-C----C--CcCCCCCEEEEEEEEC
Confidence 4457888888543336665544 79999999886 3 1 3689999999887653
No 312
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=23.62 E-value=34 Score=33.01 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=26.1
Q ss_pred cccccccccccccchhhccCCCHHHHHHHHHHHHhc--CCCCCHHHHh
Q 039337 655 DINLAIHREWQFAPLQFISGLGPRKAASLQRSLVRA--GAIFTRKDFV 700 (1344)
Q Consensus 655 diN~A~~~~~~~~~Lq~v~GlGprkA~~ii~~r~~~--g~~~sr~~L~ 700 (1344)
+|..|+. ..|..|+||++.||.+|++...+. -.|.+-.++.
T Consensus 51 ~va~a~~-----~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~ 93 (114)
T 1b22_A 51 AVAYAPK-----KELINIKGISEAKADKILAEAAKLVPMGFTTATEFH 93 (114)
T ss_dssp GBTSSBH-----HHHHTTTTCSTTHHHHHHHHHHHHSCCC--------
T ss_pred HHHhCCH-----HHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHH
Confidence 3456665 799999999999999999998652 2366655543
No 313
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=23.34 E-value=96 Score=34.11 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=39.0
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEcC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLGA 529 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG~ 529 (1344)
.++|| |=|.+.++++++|.+|+++...+.... . ..+.-.+.+.+++.+.++..|+||.
T Consensus 5 ~~lgi--diggt~i~~~l~d~~g~il~~~~~~~~--~--------~~~~~~~~i~~~i~~~~i~gigi~~ 62 (292)
T 2gup_A 5 TIATI--DIGGTGIKFASLTPDGKILDKTSISTP--E--------NLEDLLAWLDQRLSEQDYSGIAMSV 62 (292)
T ss_dssp CEEEE--EEETTEEEEEEECTTCCEEEEEEECCC--S--------SHHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred EEEEE--EECCCEEEEEEECCCCCEEEEEEEeCC--C--------CHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 47887 666778999999999999976443221 1 1234456677777765666677764
No 314
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=23.33 E-value=82 Score=37.88 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.7
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEE
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLF 489 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~ 489 (1344)
.|||| |-|.+.+|++++|++|+++..-+
T Consensus 7 ~~lgI--DiGTts~Ka~l~d~~G~i~~~~~ 34 (482)
T 3h6e_A 7 ATIVI--DLGKTLSKVSLWDLDGRMLDRQV 34 (482)
T ss_dssp -CEEE--EECSSEEEEEEECTTSCEEEEEE
T ss_pred eEEEE--EcCCCCeEEEEEECCCcEEEEEE
Confidence 47887 88989999999999999997544
No 315
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=23.14 E-value=85 Score=37.49 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=45.6
Q ss_pred cccccccCCCccc-CCHHHHHHHhhcCCCCcEEEecCCCCCCceEEEEEEeC--ceeeEEEEee
Q 039337 961 FKERLIVHPCFQN-VTADEAMKLLSAKEPGESIIRPSSRGPSYLTLTLKVYD--GVYAHKDIIE 1021 (1344)
Q Consensus 961 ~~~RvI~HP~F~n-~~~~qAe~~L~~~~~Gd~viRPSSkG~d~L~vTwKv~d--~v~~HidV~E 1021 (1344)
.+..+=..++|+- |+-.+|+++|.+++.|.++||=|..-.-.++++|.-.| +-..|+.|.-
T Consensus 344 hL~~lW~dg~I~GFIsk~ea~~lL~~~~~GTFLLRFSeS~~GgitIsyV~~d~~~~~kh~~v~p 407 (473)
T 1uur_A 344 HISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQP 407 (473)
T ss_dssp THHHHHHHTSSCBSCCHHHHHHTTSSCCTTCEEEEECSSSTTCEEEEEECSSSSCCEEEEECCG
T ss_pred HHHHHHhcCcEEEEecHHHHHHHhhCCCCCeEEEEeccCCCceEEEEEEeecCCCceeEEEecC
Confidence 3344444455555 68888999999999999999999888888999998754 3445665543
No 316
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=23.10 E-value=20 Score=44.59 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhh
Q 039337 1046 FEDLDEVVDRYIDPL 1060 (1344)
Q Consensus 1046 y~DLDEii~~~V~pm 1060 (1344)
..-+||+-.+|=...
T Consensus 65 ~~~~D~aA~~HD~~Y 79 (736)
T 3ng9_A 65 VNAADAAALEHDKAY 79 (736)
T ss_dssp ---------------
T ss_pred CCHHHHHHHHHHHHH
Confidence 334455555554444
No 317
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=22.95 E-value=1.4e+02 Score=33.28 Aligned_cols=56 Identities=13% Similarity=0.101 Sum_probs=34.2
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQ 521 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 521 (1344)
.+||| |-|.+.++++++|.+|+++........... .+..-.+.-.+.+.+++.++.
T Consensus 7 ~~lgi--Diggt~~~~~l~d~~g~il~~~~~~~~~~~----~~~~~~~~l~~~i~~~~~~~~ 62 (326)
T 2qm1_A 7 KIIGI--DLGGTTIKFAILTTDGVVQQKWSIETNILE----DGKHIVPSIIESIRHRIDLYN 62 (326)
T ss_dssp EEEEE--EECSSEEEEEEEETTCCEEEEEEEECCCTT----TTTTHHHHHHHHHHHHHHHTT
T ss_pred EEEEE--EECCCEEEEEEECCCCCEEEEEEEcCCCCC----CHHHHHHHHHHHHHHHHHHcC
Confidence 68888 777788999999999999976443221100 111122333455666676653
No 318
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.15 E-value=1.4e+02 Score=35.76 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.4
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEE
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVL 488 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~ 488 (1344)
.+||| |-|.+.+|++++|.+|+++..-
T Consensus 3 ~~lgi--DiGtT~~k~~l~d~~g~i~~~~ 29 (495)
T 2dpn_A 3 FLLAL--DQGTTSSRAILFTLEGRPVAVA 29 (495)
T ss_dssp CEEEE--EECSSEEEEEEECTTSCEEEEE
T ss_pred EEEEE--eeCCcceEEEEECCCCCEEEEE
Confidence 47887 8898999999999999999753
No 319
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=21.93 E-value=1.2e+02 Score=36.97 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=40.6
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEec--ccccccc--chhhhhhhHHHHHHHHHHHHHhC---CeEEEEcCCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTG--CLTLRSQ--NVRDQQSKKNDQERLLKFMMDHQ---PHVVVLGAVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~---p~vIaIG~~t 531 (1344)
.|||| |-|.+.+|++++|.+|+++..-... ..++... ...+..-.+.-.+.+.+++.+.. -+|.+||-.+
T Consensus 6 ~~lgI--DiGtts~ka~l~d~~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 82 (554)
T 3l0q_A 6 YFIGV--DVGTGSARAGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQVKGLGFDA 82 (554)
T ss_dssp EEEEE--EECSSEEEEEEEETTSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred EEEEE--EECcccEEEEEECCCCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhHEEEEEEcC
Confidence 58898 8888999999999999999753322 1222211 00111223333445666666543 2466666543
No 320
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=21.83 E-value=19 Score=44.69 Aligned_cols=14 Identities=21% Similarity=0.048 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhhh
Q 039337 1047 EDLDEVVDRYIDPL 1060 (1344)
Q Consensus 1047 ~DLDEii~~~V~pm 1060 (1344)
.-+|++-..|=...
T Consensus 65 n~~D~~ar~hD~aY 78 (724)
T 3ntt_A 65 NRADEVAREHDISY 78 (724)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHHH
Confidence 33455444444443
No 321
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=21.11 E-value=45 Score=38.24 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=27.0
Q ss_pred ccchhhccCCCHHHHHHHHHHHHhcCCCCCHHHHhhcc
Q 039337 666 FAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTAH 703 (1344)
Q Consensus 666 ~~~Lq~v~GlGprkA~~ii~~r~~~g~~~sr~~L~~v~ 703 (1344)
..+|..|+||||++|+.+.+ + .++|.+||..-+
T Consensus 95 l~ll~~v~GiG~k~a~~l~~---~--Gi~tledL~~a~ 127 (335)
T 2bcq_A 95 LELFSNIWGAGTKTAQMWYQ---Q--GFRSLEDIRSQA 127 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHH---T--TCCSHHHHHHHC
T ss_pred HHHHhcCCCcCHHHHHHHHH---c--CCCCHHHHHHHh
Confidence 36888999999999999943 2 699999998543
No 322
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=20.96 E-value=84 Score=35.31 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=35.8
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEeccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEc
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGCLTLRSQNVRDQQSKKNDQERLLKFMMDHQPHVVVLG 528 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~p~vIaIG 528 (1344)
.+||| |-|.+.++++++|.+|+++....... +. . +..-.+.-.+.+.+++.++++.-|+||
T Consensus 3 ~~lgi--DiGgt~i~~~l~d~~G~i~~~~~~~~--~~--~--~~~~~~~i~~~i~~~~~~~~i~gigi~ 63 (321)
T 3vgl_A 3 LTIGV--DIGGTKIAAGVVDEEGRILSTFKVAT--PP--T--AEGIVDAICAAVAGASEGHDVEAVGIG 63 (321)
T ss_dssp EEEEE--EECSSEEEEEEECTTCCBCCCEEEEC--CS--S--HHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEE--EECCCEEEEEEECCCCCEEEEEEeeC--CC--C--HHHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 47887 77778899999999999987533322 11 1 111122223334444445566666665
No 323
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.94 E-value=21 Score=42.66 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCC
Q 039337 1207 GSRTGRNDYRNGGGRDGHPSGLPRPYGGRGRGRGSNNSNRGNSSNSERQDSSYDTPKWDSANK--SGDDSWGNFPGAKAQ 1284 (1344)
Q Consensus 1207 ~~~~g~~~~~~gg~~~g~~~g~~~~~gg~g~g~g~~~~~gG~G~g~g~g~gg~~~~~w~~~~~--~g~~~~g~~~~~~~~ 1284 (1344)
.+..+.....+.+.+.|.....++..|-.|....|..+-|..|...-+..+..+.++|..|+. |..|.|.. +..
T Consensus 245 ~g~~~~~~g~s~~~g~gs~~~s~r~pgs~~~~~~gs~~pgs~g~~~pg~~~~gs~g~w~~gs~~pgs~g~w~~----g~~ 320 (562)
T 3ghg_A 245 PGGNEITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNS----GSS 320 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcccCCCCCCCCCCCCCccCCCCCCCCCCCCCCC----CCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCC
Q 039337 1285 NPAGREAFPGGWGSSGGGGSSGWGGASDGDNGGWGHSSGGADKDSGWGGGGSKRSS----DGGW 1344 (1344)
Q Consensus 1285 ~~~g~g~~~gG~g~~g~ggg~g~gg~~~g~~~g~g~~~~~~~~~~~~g~~~~~~~~----~~~w 1344 (1344)
+.|+-|.-.-|.-..|+.|.=.-|..+.|..+.|-.+ .++.+.|..+..+.+. ..||
T Consensus 321 ~~gs~g~w~~g~~~pgs~g~w~~g~~~~gs~~~w~~g---~~~~gs~~~~ss~~g~~rp~s~g~ 381 (562)
T 3ghg_A 321 GTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSE---SSVSGSTGQWHSESGSFRPDSPGS 381 (562)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCCCccCCCCCCCCccccccCCCCCCCcccccccC---CCCCCccCCCCCCCCCcCCCCCCC
No 324
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=20.85 E-value=1.2e+02 Score=28.14 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=37.6
Q ss_pred CeEEEEEEEEEec-ccEEEEeCCC-eEEEEeceecCCCccccCcccccCCCCEEEEEEE
Q 039337 847 GRVVQATVRRVQG-QRAICVLESG-LAGMLMKEDYSDDWRDSELSDKLHEGDILTCKIK 903 (1344)
Q Consensus 847 G~iV~g~V~~V~~-~g~fV~L~~g-i~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi 903 (1344)
.+...|+|+.... || |+.-+.| -+=|+|++.|... ...+..||.|...|.
T Consensus 16 ~~~~~G~Vkwf~KGfG-FI~~ddg~~DvFvH~s~i~~~------~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFG-FIERGDVVKEIFFHYSEFKGD------LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEE-EEECSSSCCCEEEETTTCCSC------TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCce-EEecCCCCceEEEEehHhccc------cCCCCCCCEEEEEEE
Confidence 5667899998833 34 6666554 7999999998754 246899999999885
No 325
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=20.82 E-value=52 Score=40.55 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=37.1
Q ss_pred hhhccCCCHHHHHHHHHHHHhcC----------CCCCHHHHhhccCCCHHHHHhccCc
Q 039337 669 LQFISGLGPRKAASLQRSLVRAG----------AIFTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 669 Lq~v~GlGprkA~~ii~~r~~~g----------~~~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
|..+||+|+..|..|..+++++. ......+|++|+|+|||+-..+-.-
T Consensus 55 ~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 88999999999999999986532 1233456789999999987776443
No 326
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=20.77 E-value=33 Score=38.55 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=34.2
Q ss_pred chhhccCCCHHHHHHHHHHHHh--cCCC-----------CCHHHHhhccCCCHHHHHhccCc
Q 039337 668 PLQFISGLGPRKAASLQRSLVR--AGAI-----------FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 668 ~Lq~v~GlGprkA~~ii~~r~~--~g~~-----------~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
.|.. +|+|- ||+.|++.-+. .|.+ ..+++|+.++|||++|-.-..-|
T Consensus 171 ~L~~-~g~g~-Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 171 DFEE-CTAGF-RAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHHH-TTCGG-GHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHH-cCCch-HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 4444 68885 79999876653 4433 35788999999999997776655
No 327
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=20.59 E-value=41 Score=36.04 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.8
Q ss_pred cchhhccCCCHHHHHHHHHHHH
Q 039337 667 APLQFISGLGPRKAASLQRSLV 688 (1344)
Q Consensus 667 ~~Lq~v~GlGprkA~~ii~~r~ 688 (1344)
..|..|||||+++|+.|+.-++
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987763
No 328
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=20.51 E-value=1.5e+02 Score=35.63 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=40.1
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEecc--ccccccc--hhhhhhhHHHHHHHHHHHHHhC---CeEEEEcCCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTGC--LTLRSQN--VRDQQSKKNDQERLLKFMMDHQ---PHVVVLGAVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~~--~~~~~~~--~~~~~~~~~~~~~l~~~i~~~~---p~vIaIG~~t 531 (1344)
.+||| |-|.+.+|++++|.+|+++..-.... .++...- ..+..-.+.-.+.+.+++.+.. -++.+||-++
T Consensus 4 ~~lgi--DiGtt~~k~~l~d~~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~i~~Igis~ 80 (497)
T 2zf5_O 4 FVLSL--DEGTTSARAIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPNQIAAIGVTN 80 (497)
T ss_dssp EEEEE--EECSSEEEEEEECTTCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred EEEEE--ecCCchhEEEEECCCCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEec
Confidence 47888 88999999999999999997533222 2222110 0112222333445556666543 2466666544
No 329
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=20.39 E-value=1.4e+02 Score=29.38 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=39.4
Q ss_pred cCCeEEEEEEEEEecccEEEEeCCCe--EEEEeceecCCCccccCcccccCCCCEEEEEEEE
Q 039337 845 AEGRVVQATVRRVQGQRAICVLESGL--AGMLMKEDYSDDWRDSELSDKLHEGDILTCKIKS 904 (1344)
Q Consensus 845 ~~G~iV~g~V~~V~~~g~fV~L~~gi--~GlIh~s~lsd~~~~~~~~~~~~vGq~V~vkVi~ 904 (1344)
..|.-++|+|+.|.+..++|...+.- +-.|+.+++--- ........|.+||.|.|-...
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlp-P~~~~~~~f~~gd~VEV~~~~ 73 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLP-PPADYNKEITEGDEVEVYSRA 73 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECC-CCC----CCCTTCEEEEEECC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcC-CCcccccCCCCCCEEEEEecC
Confidence 35999999999999999999997642 456666655221 000112468999999986543
No 330
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=20.20 E-value=41 Score=35.72 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHh------------cC-CC-CCHHHHhhccCCCHHHHHhccCc
Q 039337 675 LGPRKAASLQRSLVR------------AG-AI-FTRKDFVTAHGLGKKVFVNAVGF 716 (1344)
Q Consensus 675 lGprkA~~ii~~r~~------------~g-~~-~sr~~L~~v~~iG~kvf~n~a~F 716 (1344)
+-.+||+.|.+..+. .| .. ..|++|++++|||++|-.-...|
T Consensus 81 ~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 81 FYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 445788887765541 11 22 67899999999999986665554
No 331
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=20.19 E-value=1.4e+02 Score=36.07 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=40.9
Q ss_pred eEeEeecCCCCCceEEEEECCCCCEEEEEEec--ccccccc--chhhhhhhHHHHHHHHHHHHHhC---CeEEEEcCCC
Q 039337 460 RVLACCWGPGKPETTFVMLDSSGEVVDVLFTG--CLTLRSQ--NVRDQQSKKNDQERLLKFMMDHQ---PHVVVLGAVN 531 (1344)
Q Consensus 460 rVlai~~dpg~~g~~~a~vd~~G~vld~~~~~--~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~---p~vIaIG~~t 531 (1344)
.|||| |-|.+.+|++++|.+|+++..-... ..++... ...+..-.+.-.+.+.+++.+.. -+|.+||-++
T Consensus 6 ~~lgI--DiGtts~k~~l~d~~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~ 82 (506)
T 3h3n_X 6 YVMAI--DQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIAGIGITN 82 (506)
T ss_dssp EEEEE--EECSSEEEEEEEETTSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred EEEEE--EcCCCceEEEEECCCCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhheEEEEeeC
Confidence 68888 8898999999999999999753322 2222211 00112222333445566666643 2466666544
Done!