BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039338
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 38/359 (10%)
Query: 92 KWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSN---NKY 148
+ P + GGM + + LA++G V I+T + EN N Y
Sbjct: 14 QQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPY 73
Query: 149 PLLHFHEGEADKWRYSKGWEQFDEENQREPFDVVHSES--VALPHWLARNVTNLAVSWHG 206
L E ++ G F ++ +D++HS WL R++ + +
Sbjct: 74 EGLSKEELPTQLAAFTGGMLSF-TRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTA 132
Query: 207 IALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEM 266
L ++++ D E + + + + +N HH
Sbjct: 133 HTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHH---------- 182
Query: 267 LRDVYQIPSERVHVILNGINENEY--GVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDK 324
Y +R+ V+ G + Y G D + +S R +GIP + +V V GRL K
Sbjct: 183 ----YDADPDRISVVSPGADVELYSPGNDRATERS-RRELGIPLHTKVVAFV-GRLQPFK 236
Query: 325 GHPLLHEAFSKLMVKYPD--VYLIVAG--SGP------WEQRYKDFG--HQVLVMGSMSP 372
G +L +A + L + PD + +I+ G SGP + ++ G ++ + P
Sbjct: 237 GPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPP 296
Query: 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMF 431
+EL A Y A DI P+ + L MEA SG PV+A+R + V + E G +
Sbjct: 297 SELVAVYRAADIVAVPSFN-ESFGLVAMEAQASGTPVIAARVGGLP-IAVAEGETGLLV 353
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 147/377 (38%), Gaps = 43/377 (11%)
Query: 79 PSKFTLKIAVFSR-----KWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSP 133
P +++A+ S + P + GGM + + LA++G V I+T
Sbjct: 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE 75
Query: 134 SISHQENDDGSN---NKYPLLHFHEGEADKWRYSKGWEQFDEENQREPFDVVHSES--VA 188
+ EN N Y L E ++ G F ++ +D++HS
Sbjct: 76 IVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSF-TRREKVTYDLIHSHYWLSG 134
Query: 189 LPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIR 248
WL R++ + + L ++++ D E + + + + +N
Sbjct: 135 QVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQE 194
Query: 249 FFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEY--GVDLSLGQSFRSRIGI 306
HH Y +R+ V+ G + Y G D + +S R +GI
Sbjct: 195 EMQDLMHH--------------YDADPDRISVVSPGADVELYSPGNDRATERS-RRELGI 239
Query: 307 PKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPD--VYLIVAG--SGP------WEQR 356
P + +V V GRL KG +L +A + L + PD + +I+ G SGP +
Sbjct: 240 PLHTKVVAFV-GRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHM 298
Query: 357 YKDFG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRF 414
++ G ++ + P+EL A Y A DI P+ + L MEA SG PV+A+R
Sbjct: 299 AEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFN-ESFGLVAMEAQASGTPVIAARV 357
Query: 415 PSIKGTIVVDDEFGFMF 431
+ V + E G +
Sbjct: 358 GGLP-IAVAEGETGLLV 373
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
Query: 305 GIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWE---QRYKDFG 361
G P+ VL + KG +L A KL+ ++PDV +++ G G + ++ D
Sbjct: 203 GYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLA 262
Query: 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTI 421
+ +G + A + + D++ P L + + L+EAM +G V+AS + + +
Sbjct: 263 GHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVL 322
Query: 422 VVDDEFGFMFAPNVESLHKTLEAAVSEGPMR---LAQRGEACRQYAASMFTANKM 473
D + + + + L + + +R +A+ E +Y S+ +A M
Sbjct: 323 ADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIM 377
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 301 RSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYK-- 358
R ++G + + V+ RLV KG L +A +++ PD L++ GSG +E +
Sbjct: 189 RKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRL 247
Query: 359 --DFGHQVLVMGSMSPAELRAFYNAIDIFVNPT------LRPQGLDLTLMEAMMSGKPVM 410
D V +G + ++ A DIF P L +GL + +EA G PV+
Sbjct: 248 ATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVI 307
Query: 411 A 411
A
Sbjct: 308 A 308
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 301 RSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYK-- 358
R ++G + + V+ RLV KG L +A +++ PD L++ GSG +E +
Sbjct: 189 RKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRL 247
Query: 359 --DFGHQVLVMGSMSPAELRAFYNAIDIFVNPT------LRPQGLDLTLMEAMMSGKPVM 410
D V +G + ++ A DIF P L +GL + +EA G PV+
Sbjct: 248 ATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVI 307
Query: 411 A 411
A
Sbjct: 308 A 308
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 331 EAFSKLMVKYPDVYLIVAG----SGP-----WEQRYKDFG--HQVLVMGSM---SPAELR 376
E + K+ K P V L++ G P +E+ + G + V V+ ++ E+
Sbjct: 251 EIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVN 310
Query: 377 AFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVE 436
AF A D+ + ++R +G LT+ EAM GKPV+ IK I VD E GF+ E
Sbjct: 311 AFQRASDVILQMSIR-EGFGLTVTEAMWKGKPVIGRAVGGIKFQI-VDGETGFLVRDANE 368
Query: 437 SLHKTL 442
++ L
Sbjct: 369 AVEVVL 374
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 331 EAFSKLMVKYPDVYLIVAG----SGP-----WEQRYKDFG--HQVLVMGSM---SPAELR 376
E + K+ K P V L++ G P +E+ + G + V V+ ++ E+
Sbjct: 251 EIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVN 310
Query: 377 AFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVE 436
AF A D+ + ++R G LT+ EAM GKPV+ IK I VD E GF+ E
Sbjct: 311 AFQRASDVILQMSIRA-GFGLTVTEAMWKGKPVIGRAVGGIKFQI-VDGETGFLVRDANE 368
Query: 437 SLHKTL 442
++ L
Sbjct: 369 AVEVVL 374
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 96/435 (22%), Positives = 176/435 (40%), Gaps = 89/435 (20%)
Query: 77 NQPSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSIS 136
Q + ++K+ + +P + GG L LA RGH +H TS + P
Sbjct: 27 QQMGRGSMKLKIGITCYP---SVGGSGVVGTELGKQLAERGHEIHFITSGL-----PF-- 76
Query: 137 HQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFD--------EENQREPFDVVHSESVA 188
N YP ++FHE +++ + + +D E QRE D++H A
Sbjct: 77 ------RLNKVYPNIYFHEVTVNQYSVFQ-YPPYDLALASKMAEVAQRENLDILHVH-YA 128
Query: 189 LPH----WLARNVTN----LAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVM 240
+PH +LA+ + + + HG + L S + SL
Sbjct: 129 IPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS------------------DPSLN--- 167
Query: 241 LKVLNEIRFFNKYAHHV-AISDSCGEMLRDVYQI--PSERVHVILNGINENEY-GVDLSL 296
N IRF + + V A+S S ++ + +++ P++ + + N I+E Y D++
Sbjct: 168 ----NLIRFGIEQSDVVTAVSHS---LINETHELVKPNKDIQTVYNFIDERVYFKRDMT- 219
Query: 297 GQSFRSRIGIPKNASLVLGVAG-RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP--- 352
+ GI ++ +++ ++ R VK + +AF+K++ + D L++ G GP
Sbjct: 220 --QLKKEYGISESEKILIHISNFRKVKRVQDVV--QAFAKIVTEV-DAKLLLVGDGPEFC 274
Query: 353 -WEQRYKDF--GHQVLVMGSM-SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP 408
Q K+ +VL +G + AEL A + + + + L L+EAM G P
Sbjct: 275 TILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLS----EKESFGLVLLEAMACGVP 330
Query: 409 VMASRFPSIKGTIVVDDEFGFM--FAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAAS 466
+ +R I I D G++ + ++ E R GE R+
Sbjct: 331 CIGTRVGGIPEVIQHGDT-GYLCEVGDTTGVADQAIQLLKDEELHR--NMGERARESVYE 387
Query: 467 MFTANKMALAYERLF 481
F + K+ YE ++
Sbjct: 388 QFRSEKIVSQYETIY 402
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 331 EAFSKLMVKYPDVYLIVAGSGP---------WEQRYKDFG--HQVLVMGSM---SPAELR 376
E + K+ K P V L++ G +E+ + G + V V+ ++ E+
Sbjct: 251 EIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVN 310
Query: 377 AFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVE 436
AF A D+ + ++R +G LT+ EA GKPV+ IK I VD E GF+ E
Sbjct: 311 AFQRASDVILQXSIR-EGFGLTVTEAXWKGKPVIGRAVGGIKFQI-VDGETGFLVRDANE 368
Query: 437 SLHKTL 442
++ L
Sbjct: 369 AVEVVL 374
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 170/422 (40%), Gaps = 88/422 (20%)
Query: 92 KWPISTTP--GGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYP 149
K I+ P GG L LA RGH +H TS + P N YP
Sbjct: 17 KIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGL-----PF--------RLNKVYP 63
Query: 150 LLHFHEGEADKWRYSKGWEQFD--------EENQREPFDVVHSESVALPH----WLARNV 197
++FHE +++ + + +D E QRE D++H A+PH +LA+ +
Sbjct: 64 NIYFHEVTVNQYSVFQ-YPPYDLALASKMAEVAQRENLDILHVH-YAIPHAICAYLAKQM 121
Query: 198 ----TNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253
+ + HG + L S + SL N IRF +
Sbjct: 122 IGERIKIVTTLHGTDITVLGS------------------DPSLN-------NLIRFGIEQ 156
Query: 254 AHHV-AISDSCGEMLRDVYQI--PSERVHVILNGINENEY-GVDLSLGQSFRSRIGIPKN 309
+ V A+S S ++ + +++ P++ + + N I+E Y D++ + GI ++
Sbjct: 157 SDVVTAVSHS---LINETHELVKPNKDIQTVYNFIDERVYFKRDMT---QLKKEYGISES 210
Query: 310 ASLVLGVAG-RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP----WEQRYKDF--GH 362
+++ ++ R VK + +AF+K++ + D L++ G GP Q K+
Sbjct: 211 EKILIHISNFRKVKRVQDVV--QAFAKIVTEV-DAKLLLVGDGPEFCTILQLVKNLHIED 267
Query: 363 QVLVMGSM-SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTI 421
+VL +G + AEL A + + + + L L+EAM G P + +R I I
Sbjct: 268 RVLFLGKQDNVAELLAMSDLMLLLSE----KESFGLVLLEAMACGVPCIGTRVGGIPEVI 323
Query: 422 VVDDEFGFM--FAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYER 479
D G++ + ++ E R GE R+ F + K+ YE
Sbjct: 324 QHGDT-GYLCEVGDTTGVADQAIQLLKDEELHR--NMGERARESVYEQFRSEKIVSQYET 380
Query: 480 LF 481
++
Sbjct: 381 IY 382
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 15/145 (10%)
Query: 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAG---SGPWEQRY-----KDFGHQVLVMGSM 370
R+ +K L E F KL D L + G G +RY K V +GS+
Sbjct: 31 RIYPEKRIELQLEVFKKLQ----DEKLYIVGWFSKGDHAERYARKIXKIAPDNVKFLGSV 86
Query: 371 SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFM 430
S EL Y+ + T + + LT +EA SGKPV+A K T V++++ G++
Sbjct: 87 SEEELIDLYSRCKGLL-CTAKDEDFGLTPIEAXASGKPVIAVNEGGFKET-VINEKTGYL 144
Query: 431 FAPNVESLHKTLEAAVSEGPMRLAQ 455
+V + + VS+ P + +
Sbjct: 145 VNADVNEIIDAXK-KVSKNPDKFKK 168
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 298 QSFRSRIGIPKNASL-VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQR 356
++ ++ G+P + + ++ GRL + KG ++ A +LM + DV +++ G+G
Sbjct: 313 EALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGK---- 366
Query: 357 YKDFGHQVLVMGSMSPAELRAF--YNA---------IDIFVNPTLRPQGLDLTLMEAMMS 405
K F + M P ++RA +NA D+ P+ R + L ++ M
Sbjct: 367 -KKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPS-RFEPCGLIQLQGMRY 424
Query: 406 GKPVMASRFPSIKGTIVVDDEFGF 429
G P + + T V++ + GF
Sbjct: 425 GTPCACASTGGLVDT-VIEGKTGF 447
>pdb|1UA4|A Chain A, Crystal Structure Of An Adp-Dependent Glucokinase From
Pyrococcus Furiosus
Length = 455
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 38/185 (20%)
Query: 116 RGHRVHIFTSPVDN--INSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSK-----GWE 168
RG RV F +P +N I S DD + + F E ++ + + G +
Sbjct: 183 RGFRVFEFEAPRENRFIGSA-------DDYNTTLFIREEFRESFSEVIKNVQLAILSGLQ 235
Query: 169 QFDEENQREPFDV--------------VHSESVALPHWLAR-NVTNLAVSWHGIALESLQ 213
+EN +EPF++ VH E P R + N+ ++ + L ++
Sbjct: 236 ALTKENYKEPFEIVKSNLEVLNEREIPVHLEFAFTPDEKVREEILNVLGMFYSVGLNEVE 295
Query: 214 -SGIFQDLTRKPLEPMSLAFNK----SLQGVMLKVLNEIRF----FNKYAHHVAISDSCG 264
+ I + L K L LA + ++ MLK+ + F+ Y +++A+++ G
Sbjct: 296 LASIMEILGEKKLAKELLAHDPVDPIAVTEAMLKLAKKTGVKRIHFHTYGYYLALTEYKG 355
Query: 265 EMLRD 269
E +RD
Sbjct: 356 EHVRD 360
>pdb|4PGA|A Chain A, Glutaminase-asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-asparaginase From Pseudomonas 7a
Length = 337
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 364 VLVMGSMSPAELRA------FYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS 412
++V+GSM P + YNA+ + N R +G+ +T+ + + SG+ V S
Sbjct: 120 IVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKS 174
>pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
Length = 330
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 364 VLVMGSMSPAELRA------FYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS 412
++V+GSM P + YNA+ + N R +G+ +T+ + + SG+ V S
Sbjct: 113 IVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKS 167
>pdb|3PGA|1 Chain 1, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|2 Chain 2, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|3 Chain 3, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|4 Chain 4, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
Length = 337
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 364 VLVMGSMSPAELRA------FYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS 412
++V+GSM P + YNA+ + N R +G+ +T+ + + SG+ V S
Sbjct: 120 IVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDVSKS 174
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 210 ESLQSGIFQDLTRKPLEPMSLAFNKSL--QGVMLKVLNEIRFFNKYAHHVAISDSCGEML 267
E ++ G+ DLT+K L L FN+ L Q +KV +I + + I + E+L
Sbjct: 907 EMIEEGLIADLTKKHLRVYELIFNRFLASQSAAVKVKKQIVTVDVDGKRMGI-EQIVEIL 965
Query: 268 RD 269
RD
Sbjct: 966 RD 967
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,136,183
Number of Sequences: 62578
Number of extensions: 639831
Number of successful extensions: 1267
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 22
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)