Query 039338
Match_columns 493
No_of_seqs 393 out of 1893
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 1.7E-44 3.6E-49 363.4 42.8 371 80-487 55-438 (465)
2 PRK10307 putative glycosyl tra 100.0 1.8E-43 3.8E-48 351.9 40.3 379 84-488 1-412 (412)
3 cd03796 GT1_PIG-A_like This fa 100.0 4.2E-43 9.2E-48 347.2 37.6 353 85-487 1-371 (398)
4 TIGR03088 stp2 sugar transfera 100.0 1E-42 2.3E-47 342.5 35.5 358 84-485 2-374 (374)
5 PRK00654 glgA glycogen synthas 100.0 6.1E-43 1.3E-47 351.3 34.3 389 84-486 1-465 (466)
6 PLN02316 synthase/transferase 100.0 2.7E-42 5.9E-47 358.7 38.7 368 81-485 585-1035(1036)
7 PRK15427 colanic acid biosynth 100.0 1.9E-42 4.2E-47 340.9 35.7 357 84-484 1-406 (406)
8 PLN02939 transferase, transfer 100.0 5.3E-42 1.2E-46 349.9 36.7 399 80-488 478-971 (977)
9 TIGR03449 mycothiol_MshA UDP-N 100.0 9.2E-42 2E-46 339.4 37.2 356 99-486 19-404 (405)
10 TIGR02472 sucr_P_syn_N sucrose 100.0 9.8E-42 2.1E-46 340.6 35.9 370 97-482 23-439 (439)
11 PRK14099 glycogen synthase; Pr 100.0 2.6E-41 5.6E-46 338.1 35.1 392 81-488 1-483 (485)
12 PRK15484 lipopolysaccharide 1, 100.0 7.6E-41 1.6E-45 327.8 36.5 344 85-485 4-379 (380)
13 TIGR02095 glgA glycogen/starch 100.0 1.1E-41 2.4E-46 343.9 31.4 387 84-484 1-473 (473)
14 TIGR02149 glgA_Coryne glycogen 100.0 1.6E-40 3.6E-45 328.7 36.9 359 84-485 1-388 (388)
15 cd04962 GT1_like_5 This family 100.0 9.6E-41 2.1E-45 328.4 33.7 355 84-484 1-371 (371)
16 PRK14098 glycogen synthase; Pr 100.0 5.6E-40 1.2E-44 328.8 36.1 387 84-486 6-488 (489)
17 cd03805 GT1_ALG2_like This fam 100.0 1E-39 2.2E-44 323.5 36.5 360 84-477 1-392 (392)
18 cd03818 GT1_ExpC_like This fam 100.0 1.3E-39 2.8E-44 322.3 36.1 356 85-478 1-395 (396)
19 PRK15179 Vi polysaccharide bio 100.0 2.1E-39 4.6E-44 331.0 35.3 366 79-482 276-692 (694)
20 cd03800 GT1_Sucrose_synthase T 100.0 4.4E-39 9.5E-44 319.7 34.3 351 98-478 19-397 (398)
21 TIGR02468 sucrsPsyn_pln sucros 100.0 1.9E-38 4.2E-43 329.0 39.1 395 79-488 165-675 (1050)
22 PRK10125 putative glycosyl tra 100.0 6.8E-39 1.5E-43 314.4 33.2 371 84-484 1-405 (405)
23 cd04951 GT1_WbdM_like This fam 100.0 1.5E-38 3.3E-43 311.4 35.2 347 85-482 1-359 (360)
24 cd03819 GT1_WavL_like This fam 100.0 5.5E-39 1.2E-43 314.0 30.9 329 98-473 8-355 (355)
25 cd03825 GT1_wcfI_like This fam 100.0 3.2E-38 6.9E-43 309.7 36.0 348 84-484 1-365 (365)
26 cd03791 GT1_Glycogen_synthase_ 100.0 5.7E-39 1.2E-43 325.7 30.8 386 85-482 1-475 (476)
27 cd03814 GT1_like_2 This family 100.0 4.4E-38 9.6E-43 308.2 35.9 357 85-482 1-364 (364)
28 TIGR03087 stp1 sugar transfera 100.0 2.6E-38 5.6E-43 313.0 31.7 367 86-482 1-395 (397)
29 cd05844 GT1_like_7 Glycosyltra 100.0 5.1E-38 1.1E-42 308.6 33.3 344 85-480 1-367 (367)
30 cd03792 GT1_Trehalose_phosphor 100.0 4.1E-38 9E-43 309.2 32.4 350 85-484 1-372 (372)
31 cd03802 GT1_AviGT4_like This f 100.0 4.8E-38 1E-42 304.8 32.5 324 84-482 1-335 (335)
32 cd03795 GT1_like_4 This family 100.0 1.8E-37 4E-42 303.4 35.4 342 85-474 1-357 (357)
33 TIGR02470 sucr_synth sucrose s 100.0 6.4E-37 1.4E-41 311.9 39.8 382 80-481 252-745 (784)
34 PRK15490 Vi polysaccharide bio 100.0 1.4E-37 3.1E-42 302.8 33.4 290 166-483 268-575 (578)
35 cd03807 GT1_WbnK_like This fam 100.0 1.3E-37 2.8E-42 304.4 33.3 351 85-482 1-365 (365)
36 cd03801 GT1_YqgM_like This fam 100.0 3.3E-37 7.2E-42 301.7 36.2 362 85-482 1-374 (374)
37 cd03817 GT1_UGDG_like This fam 100.0 8.9E-37 1.9E-41 299.7 38.0 359 85-483 1-373 (374)
38 cd03821 GT1_Bme6_like This fam 100.0 2.8E-37 6.1E-42 303.2 34.4 359 85-478 1-374 (375)
39 cd03799 GT1_amsK_like This is 100.0 1.7E-37 3.7E-42 303.4 32.4 337 85-477 1-355 (355)
40 cd04955 GT1_like_6 This family 100.0 4.6E-37 1E-41 301.3 34.5 347 85-482 1-363 (363)
41 cd03823 GT1_ExpE7_like This fa 100.0 3.5E-37 7.7E-42 301.1 33.5 343 85-482 1-358 (359)
42 PRK09922 UDP-D-galactose:(gluc 100.0 1.7E-37 3.7E-42 302.9 30.1 338 84-486 1-358 (359)
43 cd03816 GT1_ALG1_like This fam 100.0 1.1E-36 2.4E-41 301.7 35.8 358 82-477 2-410 (415)
44 cd03809 GT1_mtfB_like This fam 100.0 2.7E-37 5.9E-42 302.8 31.1 356 85-478 1-364 (365)
45 PLN02846 digalactosyldiacylgly 100.0 3.5E-36 7.7E-41 292.8 36.5 355 82-482 3-390 (462)
46 cd03812 GT1_CapH_like This fam 100.0 3.4E-37 7.4E-42 301.6 29.4 336 85-466 1-348 (358)
47 cd03822 GT1_ecORF704_like This 100.0 3.6E-36 7.9E-41 295.0 36.0 339 85-482 1-366 (366)
48 KOG1111 N-acetylglucosaminyltr 100.0 1.3E-37 2.7E-42 278.2 21.1 354 84-489 1-372 (426)
49 cd03798 GT1_wlbH_like This fam 100.0 8.8E-36 1.9E-40 292.3 35.7 361 86-484 1-377 (377)
50 cd03794 GT1_wbuB_like This fam 100.0 6.8E-36 1.5E-40 295.1 35.0 365 85-477 1-393 (394)
51 PLN02949 transferase, transfer 100.0 2.4E-35 5.3E-40 291.9 37.3 384 82-488 32-461 (463)
52 cd03820 GT1_amsD_like This fam 100.0 2.1E-35 4.6E-40 286.7 36.0 334 85-478 1-347 (348)
53 cd03813 GT1_like_3 This family 100.0 5.1E-36 1.1E-40 302.0 32.3 281 177-482 172-475 (475)
54 cd03808 GT1_cap1E_like This fa 100.0 3.2E-35 7E-40 286.7 34.5 341 85-478 1-358 (359)
55 PLN00142 sucrose synthase 100.0 1E-35 2.3E-40 303.0 31.4 382 81-481 277-768 (815)
56 cd03806 GT1_ALG11_like This fa 100.0 4.5E-35 9.8E-40 289.8 34.1 366 86-475 3-418 (419)
57 cd03811 GT1_WabH_like This fam 100.0 1.7E-34 3.6E-39 280.8 31.5 337 85-469 1-352 (353)
58 cd03804 GT1_wbaZ_like This fam 100.0 2.4E-33 5.1E-38 273.5 31.7 342 85-477 1-350 (351)
59 cd04946 GT1_AmsK_like This fam 100.0 7.5E-33 1.6E-37 273.6 31.4 216 248-478 179-406 (407)
60 PHA01630 putative group 1 glyc 100.0 4.8E-32 1E-36 257.9 33.6 217 250-483 92-330 (331)
61 TIGR02918 accessory Sec system 100.0 3E-32 6.4E-37 272.5 31.8 279 166-484 199-500 (500)
62 PLN02275 transferase, transfer 100.0 7.3E-32 1.6E-36 263.7 33.1 308 100-446 15-371 (371)
63 PHA01633 putative glycosyl tra 100.0 4.6E-31 1E-35 247.6 32.3 306 84-479 1-335 (335)
64 PLN02501 digalactosyldiacylgly 100.0 1.1E-30 2.4E-35 257.2 35.3 355 83-481 322-707 (794)
65 cd04949 GT1_gtfA_like This fam 100.0 2.2E-29 4.9E-34 247.6 24.9 211 249-477 154-372 (372)
66 COG0297 GlgA Glycogen synthase 100.0 3.9E-28 8.4E-33 236.5 30.7 394 84-490 1-484 (487)
67 PRK00726 murG undecaprenyldiph 100.0 2.8E-28 6.1E-33 238.1 27.7 326 84-482 2-356 (357)
68 PRK13609 diacylglycerol glucos 100.0 4.1E-27 8.9E-32 231.7 24.8 343 82-484 3-372 (380)
69 PRK05749 3-deoxy-D-manno-octul 100.0 4.9E-26 1.1E-30 227.3 29.0 334 98-487 58-423 (425)
70 cd03785 GT1_MurG MurG is an N- 100.0 3.2E-26 6.8E-31 223.3 26.8 316 85-475 1-349 (350)
71 PRK13608 diacylglycerol glucos 99.9 4.3E-26 9.4E-31 224.1 23.9 347 82-487 4-375 (391)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2.4E-26 5.2E-31 229.3 22.3 273 178-480 131-458 (460)
73 PLN02605 monogalactosyldiacylg 99.9 5.1E-26 1.1E-30 223.3 23.8 339 86-481 1-379 (382)
74 cd04950 GT1_like_1 Glycosyltra 99.9 6.6E-25 1.4E-29 214.9 31.4 219 246-483 147-371 (373)
75 TIGR01133 murG undecaprenyldip 99.9 1.6E-25 3.6E-30 218.1 26.8 316 84-475 1-346 (348)
76 TIGR02400 trehalose_OtsA alpha 99.9 2.6E-25 5.7E-30 219.8 25.7 271 178-481 127-454 (456)
77 cd03793 GT1_Glycogen_synthase_ 99.9 9.4E-25 2E-29 213.5 28.5 300 176-486 146-589 (590)
78 KOG0853 Glycosyltransferase [C 99.9 3.5E-24 7.6E-29 205.3 24.0 380 80-486 31-470 (495)
79 PF00534 Glycos_transf_1: Glyc 99.9 1.1E-24 2.4E-29 189.6 16.4 162 298-463 3-172 (172)
80 PRK09814 beta-1,6-galactofuran 99.9 1.5E-22 3.3E-27 194.7 28.9 283 98-467 13-316 (333)
81 PLN03063 alpha,alpha-trehalose 99.9 6.3E-23 1.4E-27 215.2 24.9 277 179-487 148-481 (797)
82 KOG1387 Glycosyltransferase [C 99.9 4E-21 8.6E-26 171.5 29.7 376 85-488 45-463 (465)
83 cd01635 Glycosyltransferase_GT 99.9 2.8E-22 6.1E-27 182.7 23.4 216 86-431 1-229 (229)
84 TIGR00236 wecB UDP-N-acetylglu 99.9 9E-23 1.9E-27 199.7 20.2 345 84-479 1-363 (365)
85 PRK00025 lpxB lipid-A-disaccha 99.9 3.6E-22 7.8E-27 196.8 19.7 340 83-487 1-377 (380)
86 PRK14501 putative bifunctional 99.9 4.1E-22 8.8E-27 209.8 20.2 275 179-487 134-466 (726)
87 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.7E-21 3.6E-26 191.0 20.6 320 85-456 1-344 (363)
88 COG0438 RfaG Glycosyltransfera 99.9 7E-18 1.5E-22 163.9 37.3 222 252-487 150-380 (381)
89 TIGR02398 gluc_glyc_Psyn gluco 99.9 1.8E-19 3.9E-24 177.0 23.8 271 179-482 133-481 (487)
90 KOG2941 Beta-1,4-mannosyltrans 99.8 3.2E-16 7E-21 140.5 30.1 341 105-477 28-435 (444)
91 PF13692 Glyco_trans_1_4: Glyc 99.8 7.1E-19 1.5E-23 146.4 12.1 131 312-448 3-135 (135)
92 PLN03064 alpha,alpha-trehalose 99.8 4.4E-17 9.6E-22 170.2 23.7 275 179-485 232-563 (934)
93 TIGR00215 lpxB lipid-A-disacch 99.7 2.8E-16 6.1E-21 153.7 23.3 322 85-465 7-367 (385)
94 TIGR03713 acc_sec_asp1 accesso 99.7 2.1E-16 4.4E-21 158.4 21.8 209 249-481 269-519 (519)
95 COG3914 Spy Predicted O-linked 99.7 1.8E-15 3.8E-20 145.2 23.2 342 78-487 254-617 (620)
96 TIGR02094 more_P_ylases alpha- 99.7 8.5E-15 1.9E-19 148.6 25.9 231 248-481 258-598 (601)
97 COG0707 MurG UDP-N-acetylgluco 99.7 3.9E-14 8.5E-19 134.9 24.8 323 84-479 1-353 (357)
98 PF13439 Glyco_transf_4: Glyco 99.6 1.8E-15 3.9E-20 132.0 11.9 174 86-291 1-177 (177)
99 PF13844 Glyco_transf_41: Glyc 99.6 1.4E-14 3.1E-19 140.3 18.7 180 299-484 274-467 (468)
100 PRK12446 undecaprenyldiphospho 99.6 5.5E-13 1.2E-17 128.7 28.4 302 84-453 1-329 (352)
101 TIGR02919 accessory Sec system 99.5 1.7E-12 3.8E-17 127.2 24.0 186 251-465 238-427 (438)
102 PF05693 Glycogen_syn: Glycoge 99.5 3.7E-12 8E-17 124.8 21.4 243 241-488 210-586 (633)
103 PRK10117 trehalose-6-phosphate 99.5 6.7E-12 1.5E-16 122.5 21.9 276 179-487 124-457 (474)
104 PF13528 Glyco_trans_1_3: Glyc 99.5 5.6E-12 1.2E-16 121.1 20.1 293 84-445 1-317 (318)
105 TIGR03568 NeuC_NnaA UDP-N-acet 99.5 2.6E-11 5.6E-16 117.7 24.8 312 84-446 1-337 (365)
106 PF00982 Glyco_transf_20: Glyc 99.5 1.5E-11 3.4E-16 121.6 22.9 274 178-482 141-473 (474)
107 PF13579 Glyco_trans_4_4: Glyc 99.4 6.8E-13 1.5E-17 113.5 11.2 151 100-284 1-160 (160)
108 PF13524 Glyco_trans_1_2: Glyc 99.4 5E-13 1.1E-17 102.6 9.1 92 384-479 1-92 (92)
109 TIGR03492 conserved hypothetic 99.4 3.7E-11 8E-16 117.8 23.5 332 98-478 5-393 (396)
110 COG1519 KdtA 3-deoxy-D-manno-o 99.4 6.9E-10 1.5E-14 104.5 30.6 312 101-467 60-404 (419)
111 cd04299 GT1_Glycogen_Phosphory 99.4 4.9E-11 1.1E-15 123.6 24.3 231 248-481 347-687 (778)
112 PLN02205 alpha,alpha-trehalose 99.4 2.2E-10 4.8E-15 121.1 25.7 276 180-486 203-554 (854)
113 COG0380 OtsA Trehalose-6-phosp 99.4 3.4E-10 7.4E-15 110.0 24.3 273 179-483 148-479 (486)
114 COG0381 WecB UDP-N-acetylgluco 99.3 2.6E-10 5.6E-15 106.5 21.4 354 81-482 1-373 (383)
115 cd03784 GT1_Gtf_like This fami 99.3 1.9E-10 4.2E-15 114.2 22.2 151 308-477 237-398 (401)
116 COG0763 LpxB Lipid A disacchar 99.3 9.9E-11 2.1E-15 108.9 15.4 323 84-462 2-357 (381)
117 TIGR03590 PseG pseudaminic aci 99.2 2.9E-09 6.2E-14 99.5 21.8 255 85-414 1-268 (279)
118 PF02684 LpxB: Lipid-A-disacch 99.2 7.7E-10 1.7E-14 105.8 17.3 308 98-455 7-346 (373)
119 TIGR01426 MGT glycosyltransfer 99.2 7.7E-09 1.7E-13 102.4 25.0 161 308-481 223-390 (392)
120 KOG4626 O-linked N-acetylgluco 99.2 2.4E-10 5.2E-15 110.6 13.2 183 299-487 748-944 (966)
121 TIGR00661 MJ1255 conserved hyp 99.2 1E-08 2.2E-13 98.3 24.7 122 309-448 187-314 (321)
122 PF04007 DUF354: Protein of un 99.2 2.6E-09 5.5E-14 100.8 19.1 296 84-448 1-310 (335)
123 COG4641 Uncharacterized protei 99.2 6E-09 1.3E-13 96.6 20.9 333 98-486 12-364 (373)
124 PF02350 Epimerase_2: UDP-N-ac 99.1 1.2E-10 2.6E-15 111.9 8.8 274 165-481 54-345 (346)
125 COG1819 Glycosyl transferases, 99.1 3.1E-09 6.8E-14 104.2 16.9 162 306-482 233-400 (406)
126 PHA03392 egt ecdysteroid UDP-g 99.0 2.4E-07 5.1E-12 93.7 27.9 133 311-457 297-440 (507)
127 PF09314 DUF1972: Domain of un 99.0 1.8E-08 4E-13 86.0 15.4 168 85-286 3-185 (185)
128 PRK01021 lpxB lipid-A-disaccha 99.0 3.6E-08 7.7E-13 98.5 19.2 323 84-465 227-587 (608)
129 PF04464 Glyphos_transf: CDP-G 98.8 1.4E-07 3E-12 92.6 17.1 194 248-454 130-341 (369)
130 PRK10017 colanic acid biosynth 98.8 3.7E-05 8.1E-10 75.8 30.9 201 248-458 172-401 (426)
131 PLN02448 UDP-glycosyltransfera 98.8 3.1E-05 6.7E-10 77.8 30.8 202 249-462 205-429 (459)
132 COG3980 spsG Spore coat polysa 98.7 1.2E-06 2.6E-11 77.8 15.8 285 84-457 1-301 (318)
133 PF13477 Glyco_trans_4_2: Glyc 98.6 4.8E-07 1E-11 75.3 12.0 102 85-208 1-110 (139)
134 PLN02208 glycosyltransferase f 98.5 0.00029 6.2E-09 70.1 30.3 206 249-463 190-416 (442)
135 COG4671 Predicted glycosyl tra 98.5 1.6E-05 3.4E-10 73.2 19.4 317 82-448 8-365 (400)
136 COG1817 Uncharacterized protei 98.5 2.2E-05 4.8E-10 71.0 18.8 297 84-448 1-314 (346)
137 PRK02797 4-alpha-L-fucosyltran 98.5 7.5E-05 1.6E-09 68.2 22.1 210 248-487 94-320 (322)
138 PLN03007 UDP-glucosyltransfera 98.5 0.00074 1.6E-08 68.4 31.9 140 301-448 276-440 (482)
139 PF08323 Glyco_transf_5: Starc 98.5 1E-07 2.2E-12 87.1 3.6 45 85-129 1-45 (245)
140 PLN00414 glycosyltransferase f 98.4 0.0015 3.2E-08 65.2 32.6 210 248-464 188-418 (446)
141 PF07429 Glyco_transf_56: 4-al 98.4 6.4E-05 1.4E-09 69.7 21.0 206 250-484 135-356 (360)
142 PRK14089 ipid-A-disaccharide s 98.4 2.2E-06 4.7E-11 81.9 10.9 130 251-412 126-260 (347)
143 PLN02410 UDP-glucoronosyl/UDP- 98.4 0.0036 7.8E-08 62.6 33.1 189 250-448 201-410 (451)
144 KOG3742 Glycogen synthase [Car 98.4 4.7E-06 1E-10 78.4 11.4 245 239-488 239-617 (692)
145 PLN02210 UDP-glucosyl transfer 98.3 0.0035 7.7E-08 62.8 32.6 341 83-448 8-415 (456)
146 PLN02670 transferase, transfer 98.3 0.0045 9.8E-08 62.0 32.7 227 248-485 209-467 (472)
147 PLN02764 glycosyltransferase f 98.3 0.0059 1.3E-07 60.7 34.7 228 249-485 196-447 (453)
148 PLN02562 UDP-glycosyltransfera 98.2 0.0078 1.7E-07 60.3 31.3 128 311-448 274-413 (448)
149 PLN02863 UDP-glucoronosyl/UDP- 98.2 0.011 2.4E-07 59.5 32.9 141 300-448 273-433 (477)
150 PLN02554 UDP-glycosyltransfera 98.1 0.0076 1.6E-07 61.1 29.7 190 248-448 206-440 (481)
151 PLN02173 UDP-glucosyl transfer 97.9 0.031 6.7E-07 55.8 32.4 202 248-462 189-420 (449)
152 TIGR02195 heptsyl_trn_II lipop 97.8 0.0014 3.1E-08 63.2 18.0 108 298-413 162-277 (334)
153 PF04101 Glyco_tran_28_C: Glyc 97.8 6.3E-07 1.4E-11 77.1 -4.9 109 343-459 32-154 (167)
154 PLN00164 glucosyltransferase; 97.8 0.056 1.2E-06 54.7 33.9 96 362-463 339-446 (480)
155 PLN02207 UDP-glycosyltransfera 97.7 0.0087 1.9E-07 59.9 21.4 189 248-447 207-425 (468)
156 PLN02992 coniferyl-alcohol glu 97.7 0.077 1.7E-06 53.4 31.5 188 248-448 196-427 (481)
157 COG0859 RfaF ADP-heptose:LPS h 97.7 0.0063 1.4E-07 58.6 19.2 96 310-413 175-277 (334)
158 PRK10964 ADP-heptose:LPS hepto 97.6 0.014 3.1E-07 56.0 21.7 95 311-413 179-279 (322)
159 PRK10916 ADP-heptose:LPS hepto 97.6 0.01 2.3E-07 57.6 20.9 106 300-413 170-287 (348)
160 TIGR02193 heptsyl_trn_I lipopo 97.5 0.013 2.9E-07 56.1 19.6 129 309-445 178-318 (319)
161 COG3660 Predicted nucleoside-d 97.5 0.044 9.6E-07 48.8 20.1 153 251-417 108-276 (329)
162 PF11440 AGT: DNA alpha-glucos 97.5 0.04 8.7E-07 49.5 19.7 295 100-448 1-353 (355)
163 PF00201 UDPGT: UDP-glucoronos 97.5 0.0017 3.7E-08 66.6 13.4 132 309-452 275-412 (500)
164 cd03789 GT1_LPS_heptosyltransf 97.4 0.019 4E-07 53.9 17.8 96 312-415 123-226 (279)
165 PRK10422 lipopolysaccharide co 97.3 0.049 1.1E-06 53.0 20.7 95 311-413 184-288 (352)
166 PF12000 Glyco_trans_4_3: Gkyc 97.3 0.0025 5.5E-08 54.0 9.7 105 176-290 64-170 (171)
167 PF06258 Mito_fiss_Elm1: Mitoc 97.3 0.043 9.4E-07 51.9 19.1 149 250-416 95-259 (311)
168 COG2327 WcaK Polysaccharide py 97.2 0.21 4.5E-06 48.0 27.0 190 248-453 148-355 (385)
169 PLN03004 UDP-glycosyltransfera 97.2 0.046 9.9E-07 54.6 19.4 190 248-448 204-424 (451)
170 PLN02555 limonoid glucosyltran 97.2 0.11 2.4E-06 52.4 22.1 204 248-463 209-442 (480)
171 PLN02152 indole-3-acetate beta 97.0 0.016 3.5E-07 57.9 14.3 139 300-448 251-417 (455)
172 TIGR03609 S_layer_CsaB polysac 97.0 0.31 6.8E-06 46.1 22.7 146 248-413 123-276 (298)
173 COG0058 GlgP Glucan phosphoryl 97.0 0.0047 1E-07 63.8 10.5 123 312-435 488-632 (750)
174 PF11997 DUF3492: Domain of un 97.0 0.035 7.7E-07 51.3 14.9 53 84-138 1-54 (268)
175 PF04230 PS_pyruv_trans: Polys 96.9 0.2 4.4E-06 46.5 20.5 152 248-414 123-284 (286)
176 PLN02167 UDP-glycosyltransfera 96.8 0.07 1.5E-06 54.1 17.1 187 249-448 212-434 (475)
177 KOG1050 Trehalose-6-phosphate 96.8 0.23 5E-06 52.2 21.0 183 277-463 240-455 (732)
178 TIGR02201 heptsyl_trn_III lipo 96.6 0.48 1E-05 45.9 20.4 96 310-413 181-286 (344)
179 PLN03015 UDP-glucosyl transfer 96.4 0.95 2.1E-05 45.5 21.4 187 248-447 200-425 (470)
180 TIGR00715 precor6x_red precorr 96.3 0.45 9.8E-06 43.6 17.3 118 312-446 131-255 (256)
181 PRK14986 glycogen phosphorylas 96.2 0.025 5.4E-07 59.4 9.5 133 307-441 540-703 (815)
182 PLN02534 UDP-glycosyltransfera 96.2 1.7 3.6E-05 44.2 35.3 189 251-447 214-443 (491)
183 PF12038 DUF3524: Domain of un 96.1 0.15 3.3E-06 42.5 11.8 129 84-269 1-136 (168)
184 COG1887 TagB Putative glycosyl 96.0 0.39 8.5E-06 47.0 16.2 187 249-448 145-353 (388)
185 PF15024 Glyco_transf_18: Glyc 95.8 0.18 3.8E-06 50.6 12.6 143 322-483 289-455 (559)
186 PF01075 Glyco_transf_9: Glyco 95.6 0.1 2.2E-06 47.8 10.1 97 308-412 103-208 (247)
187 cd04300 GT1_Glycogen_Phosphory 95.5 0.066 1.4E-06 56.4 9.2 133 307-441 527-690 (797)
188 PF06925 MGDG_synth: Monogalac 95.5 0.057 1.2E-06 46.3 7.5 82 167-284 78-168 (169)
189 PRK14985 maltodextrin phosphor 95.0 0.065 1.4E-06 56.2 7.3 133 307-441 526-689 (798)
190 PF00343 Phosphorylase: Carboh 95.0 0.98 2.1E-05 47.2 15.4 189 250-440 329-603 (713)
191 KOG1192 UDP-glucuronosyl and U 94.8 0.7 1.5E-05 47.3 14.3 131 312-452 279-425 (496)
192 PF03016 Exostosin: Exostosin 94.7 0.16 3.5E-06 48.1 8.7 71 372-443 227-300 (302)
193 PF05159 Capsule_synth: Capsul 94.7 0.52 1.1E-05 43.9 11.9 84 325-416 138-228 (269)
194 TIGR02093 P_ylase glycogen/sta 94.5 0.15 3.3E-06 53.6 8.5 133 307-441 524-687 (794)
195 PF04413 Glycos_transf_N: 3-De 92.7 0.41 8.9E-06 41.6 6.8 35 248-283 145-179 (186)
196 PLN02166 dTDP-glucose 4,6-dehy 92.4 1.2 2.6E-05 44.6 10.7 37 80-126 117-153 (436)
197 PF10933 DUF2827: Protein of u 92.4 11 0.00023 36.1 22.1 315 98-479 16-361 (364)
198 PF00862 Sucrose_synth: Sucros 92.3 1.7 3.7E-05 43.2 10.9 166 84-265 273-481 (550)
199 KOG3349 Predicted glycosyltran 91.6 2.3 4.9E-05 34.8 9.1 95 312-417 5-111 (170)
200 COG4394 Uncharacterized protei 90.8 4.5 9.7E-05 37.0 11.1 46 362-413 238-283 (370)
201 PF10093 DUF2331: Uncharacteri 90.7 3 6.5E-05 40.2 10.7 104 297-413 168-289 (374)
202 COG5017 Uncharacterized conser 90.3 2.8 6.1E-05 33.6 8.4 98 314-424 3-103 (161)
203 PLN02206 UDP-glucuronate decar 90.0 3.1 6.7E-05 41.8 10.9 35 81-125 117-151 (442)
204 PF02571 CbiJ: Precorrin-6x re 89.3 17 0.00037 33.2 15.5 56 362-418 173-231 (249)
205 PF03033 Glyco_transf_28: Glyc 88.2 0.75 1.6E-05 37.7 4.3 37 86-128 1-37 (139)
206 PF01975 SurE: Survival protei 87.6 0.87 1.9E-05 39.9 4.4 39 84-129 1-39 (196)
207 TIGR03837 efp_adjacent_2 conse 86.6 5.2 0.00011 38.3 9.2 102 299-413 169-287 (371)
208 PF08660 Alg14: Oligosaccharid 86.4 1.8 3.9E-05 37.0 5.6 32 98-129 6-39 (170)
209 PF10087 DUF2325: Uncharacteri 85.1 1.5 3.2E-05 33.5 4.1 45 374-418 41-87 (97)
210 PF02951 GSH-S_N: Prokaryotic 84.0 1.7 3.6E-05 34.5 4.0 42 84-129 1-43 (119)
211 COG0496 SurE Predicted acid ph 83.8 4.2 9.2E-05 36.8 6.9 38 84-129 1-38 (252)
212 PLN02778 3,5-epimerase/4-reduc 83.6 4.5 9.8E-05 38.2 7.6 34 79-122 5-38 (298)
213 PRK02261 methylaspartate mutas 81.4 7.9 0.00017 31.7 7.2 61 81-185 1-61 (137)
214 COG2120 Uncharacterized protei 81.4 9.8 0.00021 34.5 8.6 44 80-129 7-50 (237)
215 KOG1021 Acetylglucosaminyltran 81.2 9.6 0.00021 38.5 9.2 93 373-469 335-431 (464)
216 COG2910 Putative NADH-flavin r 80.1 2.7 5.9E-05 35.9 4.0 36 84-129 1-36 (211)
217 PRK06849 hypothetical protein; 79.6 2.3 5.1E-05 41.9 4.3 83 82-187 3-85 (389)
218 PF03358 FMN_red: NADPH-depend 78.1 6.5 0.00014 32.7 6.0 42 84-128 1-42 (152)
219 PF12996 DUF3880: DUF based on 76.9 6.6 0.00014 28.6 4.9 64 248-321 14-77 (79)
220 PF00551 Formyl_trans_N: Formy 76.2 4 8.7E-05 35.3 4.2 104 84-206 1-109 (181)
221 COG0373 HemA Glutamyl-tRNA red 75.2 48 0.001 32.8 11.5 103 332-444 193-303 (414)
222 PRK00207 sulfur transfer compl 74.3 7.2 0.00016 31.5 4.9 42 84-128 1-43 (128)
223 TIGR00639 PurN phosphoribosylg 73.9 14 0.00031 32.2 7.0 104 84-206 1-109 (190)
224 PF02441 Flavoprotein: Flavopr 73.6 6.5 0.00014 31.8 4.6 38 84-128 1-38 (129)
225 COG2099 CobK Precorrin-6x redu 73.6 72 0.0016 29.0 21.8 95 312-415 130-231 (257)
226 COG1703 ArgK Putative periplas 73.3 34 0.00074 31.9 9.4 90 98-188 60-153 (323)
227 PRK13932 stationary phase surv 73.1 6.1 0.00013 36.1 4.7 41 81-129 3-43 (257)
228 COG4635 HemG Flavodoxin [Energ 73.0 6.9 0.00015 32.4 4.4 41 84-129 1-41 (175)
229 COG1763 MobB Molybdopterin-gua 72.0 41 0.00088 28.4 9.0 40 84-128 2-41 (161)
230 PF00389 2-Hacid_dh: D-isomer 71.6 34 0.00074 27.6 8.5 92 363-462 20-117 (133)
231 TIGR03609 S_layer_CsaB polysac 71.4 59 0.0013 30.5 11.4 95 313-414 3-107 (298)
232 COG1087 GalE UDP-glucose 4-epi 71.2 12 0.00027 34.7 6.1 30 100-129 7-36 (329)
233 PRK04155 chaperone protein Hch 71.1 30 0.00064 32.4 8.9 45 84-128 50-101 (287)
234 COG4370 Uncharacterized protei 70.9 8.7 0.00019 35.6 5.0 196 250-467 176-397 (412)
235 PRK06249 2-dehydropantoate 2-r 70.8 7.6 0.00016 37.0 5.1 37 80-127 2-38 (313)
236 PF14386 DUF4417: Domain of un 70.7 14 0.0003 32.5 6.2 49 304-352 130-178 (200)
237 PRK05647 purN phosphoribosylgl 70.5 13 0.00029 32.6 6.2 105 84-206 2-110 (200)
238 PRK09271 flavodoxin; Provision 70.4 12 0.00026 31.6 5.7 38 84-126 1-38 (160)
239 PLN00016 RNA-binding protein; 70.1 5.8 0.00013 38.9 4.3 42 81-128 50-91 (378)
240 PF04321 RmlD_sub_bind: RmlD s 69.8 7.6 0.00016 36.5 4.8 33 84-126 1-33 (286)
241 PTZ00408 NAD-dependent deacety 68.7 55 0.0012 29.8 9.9 57 360-416 149-209 (242)
242 COG1553 DsrE Uncharacterized c 67.4 51 0.0011 26.2 7.9 43 84-129 1-44 (126)
243 PF01113 DapB_N: Dihydrodipico 67.0 3.6 7.7E-05 33.1 1.7 44 373-417 59-102 (124)
244 TIGR00460 fmt methionyl-tRNA f 66.9 25 0.00054 33.5 7.6 33 84-127 1-33 (313)
245 PRK13761 hypothetical protein; 66.2 72 0.0016 28.3 9.4 92 380-483 149-241 (248)
246 PRK14138 NAD-dependent deacety 66.0 56 0.0012 29.8 9.4 81 360-444 153-239 (244)
247 smart00672 CAP10 Putative lipo 65.7 59 0.0013 29.9 9.6 92 392-484 154-249 (256)
248 KOG2884 26S proteasome regulat 64.7 78 0.0017 27.9 9.2 115 312-448 109-229 (259)
249 PRK01372 ddl D-alanine--D-alan 64.3 16 0.00036 34.5 6.0 44 81-126 2-45 (304)
250 PF02310 B12-binding: B12 bind 63.9 28 0.00061 27.4 6.4 21 105-125 16-36 (121)
251 COG4565 CitB Response regulato 63.5 41 0.0009 29.6 7.5 75 373-448 36-120 (224)
252 PRK14494 putative molybdopteri 62.9 28 0.00061 31.3 6.7 38 84-126 1-38 (229)
253 PRK13940 glutamyl-tRNA reducta 62.8 89 0.0019 31.1 10.8 68 344-416 207-274 (414)
254 COG1692 Calcineurin-like phosp 62.8 53 0.0011 29.6 8.1 81 313-394 2-94 (266)
255 TIGR01915 npdG NADPH-dependent 62.7 12 0.00026 33.4 4.5 33 84-126 1-33 (219)
256 COG1701 Uncharacterized protei 62.4 99 0.0021 27.1 9.4 89 380-481 152-242 (256)
257 PRK09004 FMN-binding protein M 62.2 42 0.00092 27.7 7.3 27 98-124 11-37 (146)
258 PRK06756 flavodoxin; Provision 62.1 17 0.00038 30.0 5.1 37 84-125 2-38 (148)
259 TIGR02026 BchE magnesium-proto 62.0 36 0.00079 34.8 8.3 81 323-406 221-319 (497)
260 COG1154 Dxs Deoxyxylulose-5-ph 61.4 38 0.00083 34.8 7.9 83 363-448 534-624 (627)
261 PRK09739 hypothetical protein; 60.6 25 0.00054 30.9 6.0 43 83-129 3-46 (199)
262 cd02037 MRP-like MRP (Multiple 60.4 43 0.00093 28.3 7.3 32 98-129 9-40 (169)
263 PRK05562 precorrin-2 dehydroge 60.2 1.3E+02 0.0028 27.0 12.8 128 330-467 38-180 (223)
264 PRK06988 putative formyltransf 59.8 38 0.00083 32.2 7.5 35 84-129 3-37 (312)
265 PRK14569 D-alanyl-alanine synt 59.8 19 0.00042 33.9 5.5 42 81-124 1-42 (296)
266 PRK00005 fmt methionyl-tRNA fo 59.4 39 0.00084 32.1 7.5 33 84-127 1-33 (309)
267 COG0223 Fmt Methionyl-tRNA for 59.2 49 0.0011 31.2 7.8 36 83-129 1-36 (307)
268 COG4088 Predicted nucleotide k 59.0 11 0.00025 32.9 3.3 39 84-127 1-39 (261)
269 TIGR00087 surE 5'/3'-nucleotid 58.8 17 0.00036 33.2 4.6 38 84-129 1-38 (244)
270 cd01080 NAD_bind_m-THF_DH_Cycl 58.5 41 0.00089 28.6 6.7 92 341-441 43-140 (168)
271 PRK09358 adenosine deaminase; 58.3 1.8E+02 0.0038 28.0 12.4 141 326-483 181-336 (340)
272 PRK06027 purU formyltetrahydro 58.2 23 0.0005 33.2 5.6 106 80-206 86-195 (286)
273 PRK13011 formyltetrahydrofolat 58.2 32 0.00069 32.3 6.5 106 80-206 86-195 (286)
274 cd02067 B12-binding B12 bindin 58.0 39 0.00085 26.6 6.2 24 101-124 11-34 (119)
275 PRK05920 aromatic acid decarbo 57.2 24 0.00052 31.1 5.2 40 83-129 3-42 (204)
276 cd01020 TroA_b Metal binding p 57.1 1.1E+02 0.0023 28.4 9.8 106 373-484 44-151 (264)
277 TIGR01754 flav_RNR ribonucleot 57.0 22 0.00047 29.1 4.7 34 84-122 1-34 (140)
278 COG1091 RfbD dTDP-4-dehydrorha 56.9 23 0.0005 32.9 5.2 33 84-127 1-33 (281)
279 PF02006 DUF137: Protein of un 56.7 88 0.0019 26.4 7.9 86 380-477 88-174 (178)
280 TIGR01007 eps_fam capsular exo 56.2 35 0.00075 30.0 6.2 43 83-129 16-58 (204)
281 PRK08305 spoVFB dipicolinate s 56.0 27 0.00059 30.5 5.2 39 83-129 5-45 (196)
282 CHL00194 ycf39 Ycf39; Provisio 56.0 18 0.0004 34.4 4.7 34 84-127 1-34 (317)
283 PLN02695 GDP-D-mannose-3',5'-e 55.8 20 0.00042 35.1 5.0 37 80-126 18-54 (370)
284 PRK13869 plasmid-partitioning 55.3 35 0.00077 33.8 6.7 49 77-129 114-162 (405)
285 PF02844 GARS_N: Phosphoribosy 55.1 42 0.00091 25.7 5.5 20 167-186 51-70 (100)
286 PF05686 Glyco_transf_90: Glyc 54.7 38 0.00083 33.4 6.8 90 393-484 224-318 (395)
287 PF06564 YhjQ: YhjQ protein; 54.6 26 0.00056 31.8 5.1 42 84-129 1-42 (243)
288 COG1089 Gmd GDP-D-mannose dehy 54.4 67 0.0015 29.9 7.5 83 84-184 2-84 (345)
289 PF12146 Hydrolase_4: Putative 54.2 46 0.00099 24.1 5.5 40 84-129 16-55 (79)
290 PRK06015 keto-hydroxyglutarate 54.1 69 0.0015 28.2 7.5 75 329-410 42-121 (201)
291 PRK10037 cell division protein 53.9 22 0.00047 32.5 4.7 40 84-129 1-42 (250)
292 PF10649 DUF2478: Protein of u 53.5 22 0.00049 29.8 4.2 39 375-413 86-130 (159)
293 COG0716 FldA Flavodoxins [Ener 53.3 30 0.00066 28.7 5.1 39 84-127 2-40 (151)
294 KOG1495 Lactate dehydrogenase 53.2 1.9E+02 0.0041 26.8 10.0 164 308-489 87-268 (332)
295 PF08288 PIGA: PIGA (GPI ancho 53.1 15 0.00033 27.1 2.7 44 163-207 35-85 (90)
296 PF00201 UDPGT: UDP-glucoronos 52.8 5.7 0.00012 40.7 0.7 28 100-127 10-37 (500)
297 PF00532 Peripla_BP_1: Peripla 52.6 2E+02 0.0043 26.8 11.9 41 85-129 3-43 (279)
298 COG1519 KdtA 3-deoxy-D-manno-o 52.4 1E+02 0.0022 30.4 8.9 99 310-413 49-153 (419)
299 TIGR01470 cysG_Nterm siroheme 52.3 1.7E+02 0.0036 25.9 12.2 132 330-468 22-166 (205)
300 PRK07308 flavodoxin; Validated 52.0 41 0.00089 27.7 5.7 29 98-126 11-39 (146)
301 PRK10360 DNA-binding transcrip 51.5 1.5E+02 0.0033 25.2 10.2 67 382-448 48-118 (196)
302 KOG4131 Ngg1-interacting facto 51.4 36 0.00077 30.4 5.1 85 313-414 145-235 (272)
303 KOG0780 Signal recognition par 51.2 2.1E+02 0.0046 28.0 10.5 158 316-482 159-341 (483)
304 PF02374 ArsA_ATPase: Anion-tr 51.1 36 0.00078 32.2 5.7 39 84-129 1-41 (305)
305 COG0300 DltE Short-chain dehyd 50.9 35 0.00075 31.5 5.3 39 82-129 4-42 (265)
306 PRK13933 stationary phase surv 50.8 26 0.00056 32.1 4.5 38 84-129 1-38 (253)
307 PRK14619 NAD(P)H-dependent gly 50.5 31 0.00068 32.7 5.3 35 81-126 2-36 (308)
308 PRK05723 flavodoxin; Provision 50.5 28 0.00062 29.0 4.4 36 84-124 1-36 (151)
309 COG0569 TrkA K+ transport syst 50.4 22 0.00047 32.0 4.0 118 101-271 7-132 (225)
310 TIGR00640 acid_CoA_mut_C methy 50.3 75 0.0016 25.8 6.7 40 82-127 1-40 (132)
311 PRK11104 hemG protoporphyrinog 50.1 26 0.00057 30.1 4.3 37 84-126 1-37 (177)
312 COG2204 AtoC Response regulato 50.1 1E+02 0.0022 31.1 8.7 76 373-448 38-122 (464)
313 PRK08125 bifunctional UDP-gluc 49.4 61 0.0013 34.6 7.8 31 84-125 1-31 (660)
314 PF03308 ArgK: ArgK protein; 49.2 52 0.0011 30.1 6.1 100 82-188 28-131 (266)
315 PRK13010 purU formyltetrahydro 49.1 32 0.0007 32.2 5.0 106 80-206 90-199 (289)
316 PF11071 DUF2872: Protein of u 48.9 19 0.00042 28.7 2.8 41 374-416 65-110 (141)
317 PRK06703 flavodoxin; Provision 48.8 36 0.00078 28.2 4.9 38 84-126 2-39 (151)
318 COG0299 PurN Folate-dependent 48.4 1.6E+02 0.0035 25.6 8.5 104 84-205 1-108 (200)
319 TIGR01380 glut_syn glutathione 48.2 20 0.00044 34.0 3.6 43 84-129 1-43 (312)
320 PRK09620 hypothetical protein; 48.1 68 0.0015 28.9 6.8 21 106-126 32-52 (229)
321 PLN02884 6-phosphofructokinase 48.0 53 0.0011 32.6 6.4 46 80-129 50-96 (411)
322 PF02525 Flavodoxin_2: Flavodo 47.7 40 0.00088 29.4 5.3 42 84-128 1-44 (199)
323 PRK05708 2-dehydropantoate 2-r 47.5 27 0.00058 33.1 4.3 34 83-127 2-35 (305)
324 PRK05693 short chain dehydroge 47.2 32 0.0007 31.8 4.8 34 84-126 1-34 (274)
325 PLN02896 cinnamyl-alcohol dehy 47.1 37 0.0008 32.9 5.4 39 78-126 5-43 (353)
326 TIGR03682 arCOG04112 arCOG0411 47.0 1.7E+02 0.0036 27.9 9.4 42 365-412 248-289 (308)
327 PLN00198 anthocyanidin reducta 46.7 49 0.0011 31.7 6.2 38 80-127 6-43 (338)
328 PRK06444 prephenate dehydrogen 46.0 35 0.00075 29.9 4.4 28 84-121 1-28 (197)
329 PRK13934 stationary phase surv 46.0 34 0.00074 31.5 4.5 38 84-129 1-38 (266)
330 PRK09288 purT phosphoribosylgl 45.9 87 0.0019 30.8 7.9 38 81-129 10-47 (395)
331 PRK08105 flavodoxin; Provision 45.9 43 0.00093 27.8 4.8 28 98-125 11-38 (149)
332 PLN02260 probable rhamnose bio 45.7 61 0.0013 34.7 7.1 32 80-121 377-408 (668)
333 PRK14493 putative bifunctional 45.6 1.4E+02 0.003 27.8 8.5 38 84-127 1-38 (274)
334 PTZ00182 3-methyl-2-oxobutanat 45.6 1.4E+02 0.0029 29.1 8.8 77 309-406 233-311 (355)
335 PRK07454 short chain dehydroge 45.5 38 0.00081 30.5 4.9 35 83-126 5-39 (241)
336 PLN02285 methionyl-tRNA formyl 45.5 87 0.0019 30.1 7.4 38 169-206 84-123 (334)
337 COG0512 PabA Anthranilate/para 45.5 32 0.00069 29.7 3.9 33 84-126 2-34 (191)
338 PRK11914 diacylglycerol kinase 45.5 87 0.0019 29.6 7.5 42 83-127 8-49 (306)
339 CHL00072 chlL photochlorophyll 45.4 50 0.0011 31.0 5.7 40 84-129 1-40 (290)
340 PRK06179 short chain dehydroge 45.4 81 0.0018 28.9 7.2 34 85-127 5-38 (270)
341 PRK13935 stationary phase surv 45.2 36 0.00079 31.1 4.5 38 84-129 1-38 (253)
342 PRK06718 precorrin-2 dehydroge 45.0 2.2E+02 0.0047 25.1 12.5 131 330-467 23-165 (202)
343 PF13614 AAA_31: AAA domain; P 45.0 59 0.0013 26.8 5.7 32 98-129 10-41 (157)
344 PRK14571 D-alanyl-alanine synt 44.7 50 0.0011 31.1 5.7 41 84-126 1-41 (299)
345 PRK07313 phosphopantothenoylcy 44.5 46 0.001 28.8 4.9 28 102-129 13-40 (182)
346 PRK09987 dTDP-4-dehydrorhamnos 44.5 58 0.0013 30.6 6.1 30 84-124 1-30 (299)
347 PLN02427 UDP-apiose/xylose syn 44.2 39 0.00086 33.2 5.1 39 78-126 9-48 (386)
348 PF10727 Rossmann-like: Rossma 44.2 14 0.0003 29.8 1.5 36 81-127 8-43 (127)
349 cd01409 SIRT4 SIRT4: Eukaryoti 44.1 1.2E+02 0.0025 28.0 7.8 57 361-417 180-242 (260)
350 PRK02122 glucosamine-6-phospha 43.9 48 0.001 35.2 5.8 43 81-129 367-409 (652)
351 PRK10569 NAD(P)H-dependent FMN 43.8 60 0.0013 28.3 5.6 40 84-127 1-41 (191)
352 PRK09435 membrane ATPase/prote 43.7 2E+02 0.0043 27.7 9.5 41 83-129 56-96 (332)
353 COG3367 Uncharacterized conser 43.5 2.8E+02 0.006 26.4 9.8 40 85-129 150-189 (339)
354 PRK00346 surE 5'(3')-nucleotid 43.4 40 0.00086 30.8 4.5 38 84-129 1-38 (250)
355 COG2185 Sbm Methylmalonyl-CoA 43.3 77 0.0017 26.1 5.6 43 81-129 10-52 (143)
356 cd02071 MM_CoA_mut_B12_BD meth 43.3 96 0.0021 24.6 6.3 30 100-129 10-39 (122)
357 KOG0780 Signal recognition par 43.1 34 0.00075 33.1 4.1 32 98-129 110-141 (483)
358 PLN03050 pyridoxine (pyridoxam 43.0 49 0.0011 30.2 5.0 34 84-124 61-94 (246)
359 PRK06180 short chain dehydroge 42.9 45 0.00098 30.9 5.1 35 84-127 4-38 (277)
360 PRK10675 UDP-galactose-4-epime 42.9 40 0.00087 32.2 4.9 32 84-125 1-32 (338)
361 TIGR00750 lao LAO/AO transport 42.6 1.9E+02 0.0042 27.2 9.3 43 82-129 32-74 (300)
362 PF03853 YjeF_N: YjeF-related 42.5 72 0.0016 27.1 5.8 41 81-128 23-63 (169)
363 PRK06522 2-dehydropantoate 2-r 42.5 35 0.00076 32.1 4.3 33 84-127 1-33 (304)
364 cd01410 SIRT7 SIRT7: Eukaryoti 42.4 85 0.0019 27.7 6.4 57 360-416 130-192 (206)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 42.3 41 0.00088 29.2 4.3 34 84-128 1-34 (185)
366 TIGR03453 partition_RepA plasm 42.3 76 0.0017 31.2 6.8 47 79-129 99-145 (387)
367 PRK12921 2-dehydropantoate 2-r 42.1 34 0.00073 32.3 4.1 31 84-125 1-31 (305)
368 PRK01966 ddl D-alanyl-alanine 42.0 52 0.0011 31.6 5.4 46 81-128 1-46 (333)
369 PRK00676 hemA glutamyl-tRNA re 41.7 3.3E+02 0.0072 26.2 12.7 97 377-486 222-321 (338)
370 TIGR02622 CDP_4_6_dhtase CDP-g 41.7 57 0.0012 31.5 5.7 33 84-126 5-37 (349)
371 PRK13054 lipid kinase; Reviewe 41.6 1.3E+02 0.0027 28.5 7.9 41 83-129 3-43 (300)
372 COG0429 Predicted hydrolase of 41.2 49 0.0011 31.4 4.8 32 98-129 85-116 (345)
373 PRK13234 nifH nitrogenase redu 41.2 74 0.0016 30.0 6.2 44 81-129 1-44 (295)
374 COG1691 NCAIR mutase (PurE)-re 41.1 91 0.002 27.8 6.0 27 324-350 156-182 (254)
375 TIGR00853 pts-lac PTS system, 41.0 84 0.0018 23.7 5.3 41 82-128 2-42 (95)
376 PRK03767 NAD(P)H:quinone oxido 41.0 55 0.0012 28.7 5.0 38 84-126 2-40 (200)
377 PRK14489 putative bifunctional 41.0 1.7E+02 0.0037 28.6 8.8 44 80-128 201-244 (366)
378 cd00363 PFK Phosphofructokinas 40.9 1E+02 0.0023 29.6 7.2 42 84-129 1-42 (338)
379 PF01081 Aldolase: KDPG and KH 40.9 55 0.0012 28.7 4.8 76 330-410 47-125 (196)
380 PF02635 DrsE: DsrE/DsrF-like 40.7 82 0.0018 24.5 5.6 43 84-129 1-46 (122)
381 PRK06101 short chain dehydroge 40.6 49 0.0011 29.8 4.8 34 84-126 1-34 (240)
382 PRK10017 colanic acid biosynth 40.6 2.3E+02 0.005 28.4 9.8 101 314-414 3-156 (426)
383 PTZ00409 Sir2 (Silent Informat 40.5 2.7E+02 0.0058 25.9 9.5 85 360-448 174-264 (271)
384 PRK06924 short chain dehydroge 40.3 45 0.00098 30.2 4.6 34 84-126 1-34 (251)
385 PRK05246 glutathione synthetas 40.3 31 0.00067 32.9 3.6 44 83-129 1-44 (316)
386 PRK05993 short chain dehydroge 40.1 53 0.0011 30.4 5.1 35 84-127 4-38 (277)
387 PF02514 CobN-Mg_chel: CobN/Ma 40.1 36 0.00079 38.4 4.4 50 68-121 238-293 (1098)
388 PF04413 Glycos_transf_N: 3-De 40.0 2.1E+02 0.0046 24.7 8.4 97 312-413 23-125 (186)
389 PF09198 T4-Gluco-transf: Bact 40.0 77 0.0017 18.4 5.1 38 84-121 1-38 (38)
390 cd02070 corrinoid_protein_B12- 39.9 95 0.0021 27.3 6.3 37 83-125 82-118 (201)
391 PF13277 YmdB: YmdB-like prote 39.8 72 0.0016 29.0 5.4 79 315-394 1-91 (253)
392 PRK08177 short chain dehydroge 39.6 50 0.0011 29.4 4.7 37 84-129 1-37 (225)
393 cd02032 Bchl_like This family 39.4 67 0.0014 29.6 5.6 40 84-129 1-40 (267)
394 PF01820 Dala_Dala_lig_N: D-al 39.3 50 0.0011 26.1 4.0 44 84-129 1-44 (117)
395 PF07355 GRDB: Glycine/sarcosi 39.2 66 0.0014 30.8 5.3 20 166-185 68-87 (349)
396 TIGR00655 PurU formyltetrahydr 39.2 69 0.0015 29.9 5.5 106 80-206 81-190 (280)
397 PF10649 DUF2478: Protein of u 38.9 2.4E+02 0.0051 23.8 10.3 105 98-206 8-132 (159)
398 KOG1429 dTDP-glucose 4-6-dehyd 38.8 64 0.0014 30.0 4.9 40 80-129 24-63 (350)
399 PRK06395 phosphoribosylamine-- 38.8 1.1E+02 0.0023 30.8 7.2 32 83-125 2-33 (435)
400 PF04272 Phospholamban: Phosph 38.7 42 0.0009 20.9 2.6 20 15-34 31-50 (52)
401 TIGR01294 P_lamban phospholamb 38.6 43 0.00093 20.9 2.6 21 15-35 31-51 (52)
402 KOG3339 Predicted glycosyltran 38.2 1.3E+02 0.0029 25.9 6.3 32 82-121 37-68 (211)
403 TIGR02690 resist_ArsH arsenica 38.2 1E+02 0.0022 27.5 6.2 43 80-126 23-66 (219)
404 COG0003 ArsA Predicted ATPase 38.2 66 0.0014 30.7 5.3 39 84-129 2-42 (322)
405 PRK08057 cobalt-precorrin-6x r 38.1 3.2E+02 0.0069 25.0 20.9 77 362-446 169-247 (248)
406 PLN02683 pyruvate dehydrogenas 38.0 2.6E+02 0.0057 27.2 9.5 112 311-448 230-352 (356)
407 TIGR03018 pepcterm_TyrKin exop 37.9 1.2E+02 0.0026 26.7 6.7 44 82-129 33-77 (207)
408 PLN02225 1-deoxy-D-xylulose-5- 37.8 1.4E+02 0.003 31.9 7.9 81 364-447 601-691 (701)
409 PRK06567 putative bifunctional 37.7 42 0.00091 37.2 4.3 35 81-126 381-415 (1028)
410 PHA00451 protein kinase 37.6 68 0.0015 29.4 4.8 39 405-448 205-243 (362)
411 COG0062 Uncharacterized conser 37.5 79 0.0017 27.8 5.2 40 83-129 49-88 (203)
412 PF03446 NAD_binding_2: NAD bi 37.4 70 0.0015 26.9 4.9 32 84-126 2-33 (163)
413 PRK10446 ribosomal protein S6 37.4 48 0.001 31.3 4.3 36 84-127 1-36 (300)
414 COG2047 Uncharacterized protei 37.2 3E+02 0.0066 24.5 14.5 148 313-480 86-238 (258)
415 PRK13789 phosphoribosylamine-- 37.2 89 0.0019 31.3 6.4 34 82-126 3-36 (426)
416 KOG1014 17 beta-hydroxysteroid 37.2 30 0.00064 32.4 2.7 36 85-129 50-85 (312)
417 PF00289 CPSase_L_chain: Carba 37.1 88 0.0019 24.4 5.0 68 106-185 14-81 (110)
418 COG3958 Transketolase, C-termi 37.1 3.6E+02 0.0077 25.3 12.3 82 311-414 194-278 (312)
419 cd01017 AdcA Metal binding pro 37.0 3.3E+02 0.0072 25.3 9.9 106 373-483 44-168 (282)
420 PRK05718 keto-hydroxyglutarate 36.9 2.7E+02 0.0059 24.7 8.7 79 329-412 53-134 (212)
421 PF00070 Pyr_redox: Pyridine n 36.9 57 0.0012 23.4 3.8 25 105-129 10-34 (80)
422 PLN02572 UDP-sulfoquinovose sy 36.8 61 0.0013 32.6 5.2 24 98-124 55-78 (442)
423 PRK05568 flavodoxin; Provision 36.7 1.2E+02 0.0027 24.5 6.2 30 98-127 11-40 (142)
424 KOG1209 1-Acyl dihydroxyaceton 36.5 94 0.002 27.5 5.4 38 83-129 7-44 (289)
425 PRK12767 carbamoyl phosphate s 36.5 75 0.0016 30.3 5.6 74 84-186 2-77 (326)
426 PRK09273 hypothetical protein; 36.2 75 0.0016 28.0 4.8 39 84-126 1-39 (211)
427 TIGR02690 resist_ArsH arsenica 36.1 3.2E+02 0.0069 24.4 9.1 92 311-411 27-133 (219)
428 PF01656 CbiA: CobQ/CobB/MinD/ 36.0 97 0.0021 26.6 5.8 32 98-129 8-39 (195)
429 TIGR00288 conserved hypothetic 35.9 1.2E+02 0.0027 25.5 5.9 64 324-388 89-155 (160)
430 PRK12342 hypothetical protein; 35.8 1.3E+02 0.0029 27.5 6.7 82 98-185 32-116 (254)
431 TIGR03371 cellulose_yhjQ cellu 35.8 86 0.0019 28.3 5.7 42 84-129 1-42 (246)
432 TIGR02113 coaC_strep phosphopa 35.8 77 0.0017 27.2 4.9 28 102-129 12-39 (177)
433 TIGR01281 DPOR_bchL light-inde 35.7 83 0.0018 29.0 5.6 40 84-129 1-40 (268)
434 COG0803 LraI ABC-type metal io 35.7 3.3E+02 0.0072 25.7 9.7 106 374-484 74-189 (303)
435 PLN02735 carbamoyl-phosphate s 35.7 1.3E+02 0.0029 34.3 7.9 42 83-127 23-67 (1102)
436 PRK08309 short chain dehydroge 35.6 77 0.0017 27.2 4.9 21 106-126 12-32 (177)
437 cd00862 ProRS_anticodon_zinc P 35.6 1.6E+02 0.0034 25.9 7.0 89 373-466 33-127 (202)
438 PLN00141 Tic62-NAD(P)-related 35.6 66 0.0014 29.2 4.9 35 83-127 17-51 (251)
439 COG3911 Predicted ATPase [Gene 35.5 71 0.0015 26.6 4.2 35 80-123 5-39 (183)
440 PLN02657 3,8-divinyl protochlo 35.5 72 0.0016 31.5 5.4 39 80-128 57-95 (390)
441 TIGR01501 MthylAspMutase methy 35.4 1.7E+02 0.0037 23.8 6.5 58 85-186 3-60 (134)
442 PRK13849 putative crown gall t 35.3 1E+02 0.0022 27.8 5.9 40 84-129 1-42 (231)
443 PF12732 YtxH: YtxH-like prote 35.2 1E+02 0.0022 22.0 4.7 39 427-465 15-54 (74)
444 cd03146 GAT1_Peptidase_E Type 35.2 2E+02 0.0044 25.4 7.7 90 325-416 16-124 (212)
445 PRK02649 ppnK inorganic polyph 35.1 2.1E+02 0.0045 27.2 8.0 54 380-448 67-124 (305)
446 PF00885 DMRL_synthase: 6,7-di 35.1 72 0.0016 26.3 4.4 43 81-127 1-46 (144)
447 PF00852 Glyco_transf_10: Glyc 35.1 48 0.001 32.1 4.0 120 312-454 177-303 (349)
448 PRK05447 1-deoxy-D-xylulose 5- 35.0 1.7E+02 0.0037 28.7 7.6 82 323-413 36-122 (385)
449 PRK14568 vanB D-alanine--D-lac 34.9 68 0.0015 31.0 5.0 44 82-127 2-45 (343)
450 TIGR00730 conserved hypothetic 34.7 1.5E+02 0.0032 25.5 6.5 48 366-417 82-137 (178)
451 PLN03049 pyridoxine (pyridoxam 34.7 64 0.0014 32.6 4.9 36 85-127 61-96 (462)
452 TIGR00877 purD phosphoribosyla 34.6 87 0.0019 31.2 5.9 33 84-127 1-33 (423)
453 PRK00170 azoreductase; Reviewe 34.6 1.1E+02 0.0023 26.7 5.9 43 84-129 2-47 (201)
454 PRK10538 malonic semialdehyde 34.5 66 0.0014 29.1 4.7 34 84-127 1-34 (248)
455 COG0062 Uncharacterized conser 34.5 1.8E+02 0.0039 25.7 7.0 95 313-417 52-162 (203)
456 cd02040 NifH NifH gene encodes 34.4 91 0.002 28.6 5.7 32 98-129 10-41 (270)
457 COG0655 WrbA Multimeric flavod 34.3 1E+02 0.0022 27.1 5.7 43 84-129 1-43 (207)
458 PRK03094 hypothetical protein; 34.0 25 0.00055 25.5 1.4 23 103-125 7-29 (80)
459 PLN02662 cinnamyl-alcohol dehy 33.9 98 0.0021 29.2 6.0 28 100-127 11-38 (322)
460 cd01408 SIRT1 SIRT1: Eukaryoti 33.9 2.3E+02 0.005 25.6 7.9 77 360-439 150-232 (235)
461 PF00258 Flavodoxin_1: Flavodo 33.9 94 0.002 25.2 5.1 32 98-129 6-37 (143)
462 PF05014 Nuc_deoxyrib_tr: Nucl 33.9 65 0.0014 25.1 3.9 40 376-415 56-98 (113)
463 TIGR01755 flav_wrbA NAD(P)H:qu 33.8 90 0.0019 27.3 5.2 38 84-126 1-39 (197)
464 PRK09730 putative NAD(P)-bindi 33.8 64 0.0014 29.0 4.5 32 84-124 1-32 (247)
465 cd02065 B12-binding_like B12 b 33.7 1.6E+02 0.0036 23.0 6.4 26 100-125 10-35 (125)
466 PRK03372 ppnK inorganic polyph 33.4 3E+02 0.0066 26.1 8.8 118 313-448 7-128 (306)
467 cd02033 BchX Chlorophyllide re 33.2 1.3E+02 0.0029 28.8 6.5 46 79-129 26-71 (329)
468 PRK07236 hypothetical protein; 33.2 40 0.00088 33.1 3.2 37 80-127 3-39 (386)
469 TIGR03029 EpsG chain length de 33.0 1.1E+02 0.0023 28.4 5.9 41 83-127 102-142 (274)
470 PRK05333 NAD-dependent deacety 33.0 4.1E+02 0.009 24.8 9.7 82 361-446 190-277 (285)
471 PF02826 2-Hacid_dh_C: D-isome 32.9 1.5E+02 0.0033 25.3 6.4 45 373-417 83-131 (178)
472 PRK07102 short chain dehydroge 32.7 69 0.0015 28.8 4.5 26 99-127 10-35 (243)
473 cd00764 Eukaryotic_PFK Phospho 32.7 1.1E+02 0.0024 33.0 6.4 98 80-186 386-486 (762)
474 PHA02518 ParA-like protein; Pr 32.6 1.3E+02 0.0027 26.4 6.1 32 98-129 10-41 (211)
475 PRK06895 putative anthranilate 32.6 57 0.0012 28.3 3.7 34 83-126 1-34 (190)
476 COG0451 WcaG Nucleoside-diphos 32.5 70 0.0015 30.0 4.7 28 102-129 9-36 (314)
477 PRK05784 phosphoribosylamine-- 32.5 1.5E+02 0.0032 30.3 7.1 31 84-125 1-33 (486)
478 COG1647 Esterase/lipase [Gener 32.4 91 0.002 27.8 4.7 35 86-127 18-52 (243)
479 PRK10427 putative PTS system f 32.3 1.2E+02 0.0025 23.9 5.0 41 84-129 3-45 (114)
480 TIGR02370 pyl_corrinoid methyl 32.3 2E+02 0.0042 25.2 7.0 58 84-185 85-142 (197)
481 KOG2452 Formyltetrahydrofolate 32.2 70 0.0015 31.5 4.4 35 84-129 1-35 (881)
482 COG1618 Predicted nucleotide k 32.1 1.1E+02 0.0023 26.0 4.8 75 373-448 92-177 (179)
483 PRK14618 NAD(P)H-dependent gly 32.1 80 0.0017 30.2 5.0 34 83-127 4-37 (328)
484 PRK08229 2-dehydropantoate 2-r 31.9 66 0.0014 30.9 4.4 33 83-126 2-34 (341)
485 PF01307 Plant_vir_prot: Plant 31.9 94 0.002 24.0 4.3 16 25-40 77-92 (104)
486 TIGR03646 YtoQ_fam YtoQ family 31.9 40 0.00086 27.0 2.2 40 374-415 68-112 (144)
487 PF02302 PTS_IIB: PTS system, 31.8 1.1E+02 0.0025 22.3 4.8 36 85-126 1-37 (90)
488 PRK00481 NAD-dependent deacety 31.8 3.7E+02 0.008 24.4 9.0 79 360-442 152-236 (242)
489 TIGR01118 lacA galactose-6-pho 31.7 98 0.0021 25.4 4.6 34 84-125 1-34 (141)
490 TIGR02069 cyanophycinase cyano 31.7 4E+02 0.0086 24.4 9.1 92 325-417 12-127 (250)
491 PF01531 Glyco_transf_11: Glyc 31.7 2.3E+02 0.0051 26.6 8.0 63 325-388 189-254 (298)
492 PRK05579 bifunctional phosphop 31.6 93 0.002 30.8 5.3 40 82-128 5-44 (399)
493 CHL00144 odpB pyruvate dehydro 31.6 2.6E+02 0.0057 26.8 8.3 115 310-448 202-325 (327)
494 PRK06029 3-octaprenyl-4-hydrox 31.6 84 0.0018 27.2 4.5 30 100-129 11-41 (185)
495 KOG0832 Mitochondrial/chloropl 31.6 3.9E+02 0.0083 24.0 12.3 47 360-418 162-209 (251)
496 PF11238 DUF3039: Protein of u 31.5 38 0.00082 22.7 1.7 16 397-412 15-30 (58)
497 COG3640 CooC CO dehydrogenase 31.4 1.3E+02 0.0029 27.1 5.6 38 84-127 1-39 (255)
498 PRK06953 short chain dehydroge 31.4 64 0.0014 28.6 4.0 34 84-126 1-34 (222)
499 KOG1192 UDP-glucuronosyl and U 31.4 78 0.0017 32.3 5.1 31 99-129 15-45 (496)
500 PRK05569 flavodoxin; Provision 31.3 1.5E+02 0.0032 24.0 5.9 38 85-127 3-40 (141)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.7e-44 Score=363.42 Aligned_cols=371 Identities=19% Similarity=0.233 Sum_probs=274.9
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEAD 159 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (493)
.+++|||++++..+|+ ...||++.++.+++++|.++||+|++++..... .... ...... .............
T Consensus 55 ~~~~mrI~~~~~~~~~-~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~--~~~~---~g~~v~--~~~~~~~~~~~~~ 126 (465)
T PLN02871 55 RSRPRRIALFVEPSPF-SYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV--PQEF---HGAKVI--GSWSFPCPFYQKV 126 (465)
T ss_pred cCCCceEEEEECCcCC-cccccHHHHHHHHHHHHHHCCCeEEEEecCCCC--Cccc---cCceee--ccCCcCCccCCCc
Confidence 3778999999875443 478999999999999999999999999976543 1100 000000 0000000000000
Q ss_pred ccccccchHHHHHHhcCCCCcEEEeCccchhHH------hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhH
Q 039338 160 KWRYSKGWEQFDEENQREPFDVVHSESVALPHW------LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFN 233 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
... ......+.+.+++.+||+||+|+.....+ ...++| +++++|+........ . ..
T Consensus 127 ~~~-~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip-~V~~~h~~~~~~~~~-----~------~~----- 188 (465)
T PLN02871 127 PLS-LALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVP-LVMSYHTHVPVYIPR-----Y------TF----- 188 (465)
T ss_pred eee-ccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCC-EEEEEecCchhhhhc-----c------cc-----
Confidence 011 11123566667788999999997532221 223557 899999753321100 0 00
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEE
Q 039338 234 KSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLV 313 (493)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~ 313 (493)
..+.+.+.. .++.+++.+|.++++|+...+.+.+.+..+.+++.+++||+|.+.|.+.... ...+.++.....+.++
T Consensus 189 ~~~~~~~~~--~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~-~~~~~~~~~~~~~~~~ 265 (465)
T PLN02871 189 SWLVKPMWD--IIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRS-EEMRARLSGGEPEKPL 265 (465)
T ss_pred hhhHHHHHH--HHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCcccc-HHHHHHhcCCCCCCeE
Confidence 011111111 1235578899999999999999988544456899999999999888664332 3345555332223377
Q ss_pred EEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCC
Q 039338 314 LGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLR 391 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~ 391 (493)
|+|+||+.+.||++.++++++++ ++++|+|+|+|+..+.++++. .+|.|+|+++++++.++|+.||++|+||.
T Consensus 266 i~~vGrl~~~K~~~~li~a~~~~----~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~- 340 (465)
T PLN02871 266 IVYVGRLGAEKNLDFLKRVMERL----PGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSE- 340 (465)
T ss_pred EEEeCCCchhhhHHHHHHHHHhC----CCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCc-
Confidence 88999999999999999998876 689999999999888777764 68999999999999999999999999996
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCccceeee---CcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD---DEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~---~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
.|++|++++|||+||+|||+++.+|.. |++.+ +++|+++++ |+++++++|.+++++ ++.+++|++++++.++ +
T Consensus 341 ~E~~g~~vlEAmA~G~PVI~s~~gg~~-eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~-~ 417 (465)
T PLN02871 341 SETLGFVVLEAMASGVPVVAARAGGIP-DIIPPDQEGKTGFLYTPGDVDDCVEKLETLLAD-PELRERMGAAAREEVE-K 417 (465)
T ss_pred ccccCcHHHHHHHcCCCEEEcCCCCcH-hhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH-h
Confidence 599999999999999999999999998 88888 999999998 999999999999998 8999999999999986 4
Q ss_pred cCHHHHHHHHHH-HHHHHhhc
Q 039338 468 FTANKMALAYER-LFLCIKNE 487 (493)
Q Consensus 468 fs~~~~~~~~~~-~~~~i~~~ 487 (493)
|+|+.+++++.+ .|++++..
T Consensus 418 fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 418 WDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 79988754
No 2
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.8e-43 Score=351.95 Aligned_cols=379 Identities=18% Similarity=0.202 Sum_probs=272.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccC--CCCCCCCCCceEeecCC-CCc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQEN--DDGSNNKYPLLHFHEGE-ADK 160 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 160 (493)
|||++++..|+| ..||++.++.+|+++|.++||+|+|+|................ ..........+...... +..
T Consensus 1 mkIlii~~~~~P--~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~ 78 (412)
T PRK10307 1 MKILVYGINYAP--ELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQ 78 (412)
T ss_pred CeEEEEecCCCC--CccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCC
Confidence 899999998865 6799999999999999999999999997643200000000000 00000111122221111 110
Q ss_pred -ccccc-------ch---HHHHHHhcCCCCcEEEeCccchh-----HHhhh--ccCcEEEEeccchhhhhhhhhhhhhhc
Q 039338 161 -WRYSK-------GW---EQFDEENQREPFDVVHSESVALP-----HWLAR--NVTNLAVSWHGIALESLQSGIFQDLTR 222 (493)
Q Consensus 161 -~~~~~-------~~---~~~~~~~~~~~~DiI~~~~~~~~-----~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~ 222 (493)
....+ .+ ..+.+.+ ..+||+||+|.+... .++++ +.| +++++|+.+....... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~p~~~~~~~~~~~~~~~~~~-~v~~~~d~~~~~~~~~---~~~- 152 (412)
T PRK10307 79 PSGLKRLLHLGSFALSSFFPLLAQR-RWRPDRVIGVVPTLFCAPGARLLARLSGAR-TWLHIQDYEVDAAFGL---GLL- 152 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcc-CCCCCEEEEeCCcHHHHHHHHHHHHhhCCC-EEEEeccCCHHHHHHh---CCc-
Confidence 00000 01 1112222 368999999875321 12222 346 8888888654322110 000
Q ss_pred CCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCccc-chhhh
Q 039338 223 KPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSL-GQSFR 301 (493)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~-~~~~r 301 (493)
. ......+... .+...++++|.++++|+.+.+.+.+ ++++..++.+||||+|.+.+.+.... ...++
T Consensus 153 -~-----~~~~~~~~~~-----~~~~~~~~ad~ii~~S~~~~~~~~~-~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~ 220 (412)
T PRK10307 153 -K-----GGKVARLATA-----FERSLLRRFDNVSTISRSMMNKARE-KGVAAEKVIFFPNWSEVARFQPVADADVDALR 220 (412)
T ss_pred -c-----CcHHHHHHHH-----HHHHHHhhCCEEEecCHHHHHHHHH-cCCCcccEEEECCCcCHhhcCCCCccchHHHH
Confidence 0 0000111111 2346688999999999999999987 57778899999999999887654322 34578
Q ss_pred hhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh----c-CcEEEecCCCHHHHH
Q 039338 302 SRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF----G-HQVLVMGSMSPAELR 376 (493)
Q Consensus 302 ~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l----~-~~V~~~g~~~~~~~~ 376 (493)
+++++++++ ++|+|+|++.+.||++.+++|++.+.+ .++++|+|+|+|+..+.++++ + ++|.|+|+++++++.
T Consensus 221 ~~~~~~~~~-~~i~~~G~l~~~kg~~~li~a~~~l~~-~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~ 298 (412)
T PRK10307 221 AQLGLPDGK-KIVLYSGNIGEKQGLELVIDAARRLRD-RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLP 298 (412)
T ss_pred HHcCCCCCC-EEEEEcCccccccCHHHHHHHHHHhcc-CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHH
Confidence 888988766 788899999999999999999998854 478999999999877766543 2 579999999999999
Q ss_pred HHHHHcCEEEeCCCCCCC----CChHHHHHHHcCCcEEecCCCCCc-cceeeeCcceEEECC-CHHHHHHHHHHHHHcCc
Q 039338 377 AFYNAIDIFVNPTLRPQG----LDLTLMEAMMSGKPVMASRFPSIK-GTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGP 450 (493)
Q Consensus 377 ~~~~~adv~v~ps~~~eg----~~~~~~EAm~~G~PvI~s~~~~~~-~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~ 450 (493)
++|++||++++|+.. |+ +|.+++|||+||+|||+++.+|.. .+++. ++|+++++ |+++++++|.+++++ +
T Consensus 299 ~~~~~aDi~v~ps~~-e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~-~ 374 (412)
T PRK10307 299 ALLKMADCHLLPQKA-GAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ-A 374 (412)
T ss_pred HHHHhcCEeEEeecc-CcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC-H
Confidence 999999999999964 76 688899999999999999987631 26665 69999998 999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 451 MRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
+.+++|++++++++++.|||+.+++++.++|++++.++
T Consensus 375 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~ 412 (412)
T PRK10307 375 LLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAER 412 (412)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999988763
No 3
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=4.2e-43 Score=347.25 Aligned_cols=353 Identities=22% Similarity=0.254 Sum_probs=265.7
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC-----C
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA-----D 159 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 159 (493)
||++++..|+| ..||.++++..++++|+++||+|+|++..... ....+. .. ....++...... .
T Consensus 1 kI~~v~~~~~p--~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~--~~~~~~------~~-~~i~v~~~p~~~~~~~~~ 69 (398)
T cd03796 1 RICMVSDFFYP--NLGGVETHIYQLSQCLIKRGHKVVVITHAYGN--RVGIRY------LT-NGLKVYYLPFVVFYNQST 69 (398)
T ss_pred CeeEEeecccc--ccccHHHHHHHHHHHHHHcCCeeEEEeccCCc--CCCccc------cc-CceeEEEecceeccCCcc
Confidence 69999998865 78999999999999999999999999976433 111111 01 111122211110 1
Q ss_pred ccccccchHHHHHHhcCCCCcEEEeCccchh----HHh-h--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHh
Q 039338 160 KWRYSKGWEQFDEENQREPFDVVHSESVALP----HWL-A--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAF 232 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~DiI~~~~~~~~----~~~-~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (493)
..........+.+.+.+.+||+||+|+.... .++ . .++| ++.+.|+........
T Consensus 70 ~~~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~-~v~t~h~~~~~~~~~------------------ 130 (398)
T cd03796 70 LPTFFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLK-TVFTDHSLFGFADAS------------------ 130 (398)
T ss_pred ccchhhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCc-EEEEecccccccchh------------------
Confidence 1112234456666667889999999975311 111 2 2456 899999853210000
Q ss_pred HhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcE
Q 039338 233 NKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASL 312 (493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~ 312 (493)
......+ ....++++|.++++|+...+.+....+++.+++.+||||+|.+.|.+.... .+ ++++
T Consensus 131 -~~~~~~~-----~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------~~-~~~~ 194 (398)
T cd03796 131 -SIHTNKL-----LRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK---------RD-NDKI 194 (398)
T ss_pred -hHHhhHH-----HHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc---------CC-CCce
Confidence 0011111 124578999999999999987655567778899999999998877654321 12 3348
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEE
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFV 386 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v 386 (493)
+++++||+.+.||++.+++|++.+.++.++++|+++|+|+..+.++++ .++|.|+|+++++++.++|+.||+++
T Consensus 195 ~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v 274 (398)
T cd03796 195 TIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFL 274 (398)
T ss_pred EEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEE
Confidence 899999999999999999999999888899999999999866655543 37799999999999999999999999
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 039338 387 NPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAAS 466 (493)
Q Consensus 387 ~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 466 (493)
+||. .|++|++++|||+||+|||+++.|+.+ |++.++ .++++++|+++++++|.+++++ ......+++++++.+++
T Consensus 275 ~pS~-~E~~g~~~~EAma~G~PVI~s~~gg~~-e~i~~~-~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~ 350 (398)
T cd03796 275 NTSL-TEAFCIAIVEAASCGLLVVSTRVGGIP-EVLPPD-MILLAEPDVESIVRKLEEAISI-LRTGKHDPWSFHNRVKK 350 (398)
T ss_pred eCCh-hhccCHHHHHHHHcCCCEEECCCCCch-hheeCC-ceeecCCCHHHHHHHHHHHHhC-hhhhhhHHHHHHHHHHh
Confidence 9996 599999999999999999999999998 887765 4555555999999999999998 55555788999999999
Q ss_pred hcCHHHHHHHHHHHHHHHhhc
Q 039338 467 MFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 467 ~fs~~~~~~~~~~~~~~i~~~ 487 (493)
+|||+++++++.++|++++..
T Consensus 351 ~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 351 MYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred hCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998764
No 4
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1e-42 Score=342.50 Aligned_cols=358 Identities=23% Similarity=0.301 Sum_probs=267.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
.||+++...+ ..||+++++.+|+++|.+.||++++++..... . .... .......+...... ....
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~--~-~~~~------~~~~~i~~~~~~~~--~~~~ 66 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS--A-FRKR------IQRPDVAFYALHKQ--PGKD 66 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC--h-hHHH------HHhcCceEEEeCCC--CCCC
Confidence 5799999875 77999999999999999999999988854322 1 1111 01111122222211 1122
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccchh--HHhh--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVALP--HWLA--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~~~--~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
...+..+.+.+++.+||+||+|+.... .+.+ .+.|..+.+.|+......+. . ......
T Consensus 67 ~~~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~---------------~---~~~~~~ 128 (374)
T TIGR03088 67 VAVYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDG---------------S---NWKYRW 128 (374)
T ss_pred hHHHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchh---------------h---HHHHHH
Confidence 334566777777889999999975321 1111 23343344555432110000 0 011111
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
+.+ ...+.+|.++++|+...+.+.+.++++..++.+|+||+|.+.|.+........+++...+++ +++++++||
T Consensus 129 ~~~-----~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~vGr 202 (374)
T TIGR03088 129 LRR-----LYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADE-SVVVGTVGR 202 (374)
T ss_pred HHH-----HHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCC-CeEEEEEec
Confidence 111 23456899999999999999988888888999999999998876654333333333333434 488999999
Q ss_pred cccccChHHHHHHHHHHHhhCC----CeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYP----DVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~----~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
+.+.||++.+++|+..+.++.+ +++|+++|+|+..+.++++ .+++.|.|.. +++.++|++||++|+||
T Consensus 203 l~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS 280 (374)
T TIGR03088 203 LQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPS 280 (374)
T ss_pred CCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEecc
Confidence 9999999999999999987654 7899999999876655543 2678899975 79999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMF 468 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~f 468 (493)
. .||+|++++|||+||+|||+++.|+.+ |++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++++.++|
T Consensus 281 ~-~Eg~~~~~lEAma~G~Pvv~s~~~g~~-e~i~~~~~g~~~~~~d~~~la~~i~~l~~~-~~~~~~~~~~a~~~~~~~f 357 (374)
T TIGR03088 281 L-AEGISNTILEAMASGLPVIATAVGGNP-ELVQHGVTGALVPPGDAVALARALQPYVSD-PAARRAHGAAGRARAEQQF 357 (374)
T ss_pred c-cccCchHHHHHHHcCCCEEEcCCCCcH-HHhcCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhC
Confidence 6 599999999999999999999999998 89999999999998 999999999999998 8899999999999999899
Q ss_pred CHHHHHHHHHHHHHHHh
Q 039338 469 TANKMALAYERLFLCIK 485 (493)
Q Consensus 469 s~~~~~~~~~~~~~~i~ 485 (493)
||+.++++++++|++++
T Consensus 358 s~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 358 SINAMVAAYAGLYDQLL 374 (374)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 99999999999999863
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=6.1e-43 Score=351.34 Aligned_cols=389 Identities=21% Similarity=0.264 Sum_probs=265.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCC---------CCCCCCceEee
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDG---------SNNKYPLLHFH 154 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 154 (493)
|||++|+.++.|....||.+.++..|+++|+++||+|+|+++....+............. ....+..+++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 899999998766567999999999999999999999999998765422111000000000 01122223322
Q ss_pred cCC-----CCcccccc-------chHHHHHHhc--CCCCcEEEeCccc--h-hHHhhh-------ccCcEEEEeccchhh
Q 039338 155 EGE-----ADKWRYSK-------GWEQFDEENQ--REPFDVVHSESVA--L-PHWLAR-------NVTNLAVSWHGIALE 210 (493)
Q Consensus 155 ~~~-----~~~~~~~~-------~~~~~~~~~~--~~~~DiI~~~~~~--~-~~~~~~-------~~p~~v~~~h~~~~~ 210 (493)
... ...+.+.. ......+.++ ..+|||||+|.+. + +.++.. ++| ++.|+|+..+.
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~-~v~TiH~~~~~ 159 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIK-TVFTIHNLAYQ 159 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCC-EEEEcCCCcCC
Confidence 211 01111110 0111222222 3589999999752 2 222321 356 99999997543
Q ss_pred hhhh-hhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHH---------hCCCCCcEEE
Q 039338 211 SLQS-GIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDV---------YQIPSERVHV 280 (493)
Q Consensus 211 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~---------~~~~~~~v~v 280 (493)
.... +..... ..+..... ...+. .....-..+..+..+|.++++|+.+++.+.+. ++.+.+++.+
T Consensus 160 g~~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~v 234 (466)
T PRK00654 160 GLFPAEILGEL-GLPAEAFH---LEGLE-FYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSG 234 (466)
T ss_pred CcCCHHHHHHc-CCChHHcC---chhhh-cCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceE
Confidence 2111 011110 00000000 00000 00000012245678999999999999888652 1235678999
Q ss_pred ecCCccCCCccCCcc-----------------cchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCe
Q 039338 281 ILNGINENEYGVDLS-----------------LGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDV 343 (493)
Q Consensus 281 i~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~ 343 (493)
|+||+|.+.|.+..+ .+..+++++|+++++.++|+++||+.++||++.+++|+.++.++ ++
T Consensus 235 I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~ 312 (466)
T PRK00654 235 ILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GG 312 (466)
T ss_pred ecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CC
Confidence 999999998877532 13467889999865557889999999999999999999999764 78
Q ss_pred EEEEEeCCCc--HHHHhh----hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCC
Q 039338 344 YLIVAGSGPW--EQRYKD----FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 344 ~l~i~G~g~~--~~~~~~----l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
+|+|+|+|+. .+.+++ ++.++.+....+.+.+..+|++||++|+||.+ |+||++++|||+||+|||+++.||+
T Consensus 313 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~-E~~gl~~lEAma~G~p~V~~~~gG~ 391 (466)
T PRK00654 313 QLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRF-EPCGLTQLYALRYGTLPIVRRTGGL 391 (466)
T ss_pred EEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCC-CCchHHHHHHHHCCCCEEEeCCCCc
Confidence 9999998853 334433 34566654334666778999999999999975 9999999999999999999999999
Q ss_pred ccceeeeC------cceEEECC-CHHHHHHHHHHHHH---cCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 039338 418 KGTIVVDD------EFGFMFAP-NVESLHKTLEAAVS---EGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKN 486 (493)
Q Consensus 418 ~~e~v~~~------~~G~~~~~-d~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~ 486 (493)
+ |++.++ ++|+++++ |+++|+++|.++++ + ++.+.++++++. ++.|||++++++|+++|+++++
T Consensus 392 ~-e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~-~~~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 392 A-DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQ-PPLWRALQRQAM---AQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred c-ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHHhh
Confidence 8 888887 89999999 99999999999887 4 566777777764 3579999999999999999875
No 6
>PLN02316 synthase/transferase
Probab=100.00 E-value=2.7e-42 Score=358.71 Aligned_cols=368 Identities=16% Similarity=0.193 Sum_probs=269.1
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccC---CC---------CCCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQEN---DD---------GSNNKY 148 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~---~~---------~~~~~~ 148 (493)
..+|||++|+.+++|....||.+.++..|.++|++.||+|.|+++....+.......... +. .....+
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G 664 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEG 664 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECC
Confidence 446999999999987778999999999999999999999999999876522111111000 00 000011
Q ss_pred CceEeecCCCCcc------c-------cccchHHHHHHhc--CCCCcEEEeCcc--chhH-Hhhh--------ccCcEEE
Q 039338 149 PLLHFHEGEADKW------R-------YSKGWEQFDEENQ--REPFDVVHSESV--ALPH-WLAR--------NVTNLAV 202 (493)
Q Consensus 149 ~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~--~~~~DiI~~~~~--~~~~-~~~~--------~~p~~v~ 202 (493)
..++++......+ . +........+.+. ..+|||||+|++ ++.+ ++.. .+| +|.
T Consensus 665 V~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p-~V~ 743 (1036)
T PLN02316 665 LSVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKAR-VVF 743 (1036)
T ss_pred cEEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCC-EEE
Confidence 2222222211111 0 0011111222221 468999999975 2222 2221 245 999
Q ss_pred EeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCC--CCcEEE
Q 039338 203 SWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIP--SERVHV 280 (493)
Q Consensus 203 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~--~~~v~v 280 (493)
++|+..+.. .. + ...+..+|.|+++|+.+++.+...+.+. ..++.+
T Consensus 744 TiHnl~~~~----------------------n~----l------k~~l~~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~v 791 (1036)
T PLN02316 744 TIHNLEFGA----------------------NH----I------GKAMAYADKATTVSPTYSREVSGNSAIAPHLYKFHG 791 (1036)
T ss_pred EeCCcccch----------------------hH----H------HHHHHHCCEEEeCCHHHHHHHHhccCcccccCCEEE
Confidence 999853210 00 0 1345689999999999999988754443 479999
Q ss_pred ecCCccCCCccCCcc------------------cchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCC
Q 039338 281 ILNGINENEYGVDLS------------------LGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPD 342 (493)
Q Consensus 281 i~ngvd~~~~~~~~~------------------~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~ 342 (493)
|+||||.+.|.|..+ .+..+++++|++..+.++|+++||+.++||++.|++|+..+.+ .+
T Consensus 792 I~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~ 869 (1036)
T PLN02316 792 ILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RN 869 (1036)
T ss_pred EECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cC
Confidence 999999988766422 1345788999985444789999999999999999999999876 37
Q ss_pred eEEEEEeCCCcHH---HHhh----h----cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEe
Q 039338 343 VYLIVAGSGPWEQ---RYKD----F----GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMA 411 (493)
Q Consensus 343 ~~l~i~G~g~~~~---~~~~----l----~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~ 411 (493)
++|+|+|+|+... .+++ + .++|.|.|..+......+|+.||++|+||. .|+||++.+|||+||+|+|+
T Consensus 870 ~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~-~EP~GLvqLEAMa~GtppVv 948 (1036)
T PLN02316 870 GQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI-FEPCGLTQLTAMRYGSIPVV 948 (1036)
T ss_pred cEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc-ccCccHHHHHHHHcCCCeEE
Confidence 8999999987532 2222 2 257999888865445689999999999996 59999999999999999999
Q ss_pred cCCCCCccceeeeC-------------cceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 412 SRFPSIKGTIVVDD-------------EFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 412 s~~~~~~~e~v~~~-------------~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
+++||++ |+|.++ .+|++|++ |+++|+.+|.+++++..+....+++.+++.+.+.|||+.++++|
T Consensus 949 s~vGGL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 949 RKTGGLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred EcCCCcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 9999999 777763 68999999 99999999999998755666778899999999999999999999
Q ss_pred HHHHHHHh
Q 039338 478 ERLFLCIK 485 (493)
Q Consensus 478 ~~~~~~i~ 485 (493)
+++|++++
T Consensus 1028 ~~LY~~a~ 1035 (1036)
T PLN02316 1028 MELYHSAR 1035 (1036)
T ss_pred HHHHHHHh
Confidence 99999875
No 7
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.9e-42 Score=340.92 Aligned_cols=357 Identities=20% Similarity=0.270 Sum_probs=263.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCcc-------ccCCCCCCCCCCc-----e
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISH-------QENDDGSNNKYPL-----L 151 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-----~ 151 (493)
|||+++...||. -.++++.+-+.+|.++||+|++++..... ...... ...+.+....... .
T Consensus 1 m~ia~~~~~~P~-----~setFi~~ei~~l~~~G~~v~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (406)
T PRK15427 1 MKVGFFLLKFPL-----SSETFVLNQITAFIDMGFEVEIVALQKGD--TQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLR 73 (406)
T ss_pred CeEEEEeccCCc-----cchhhHHHHHHHHHHcCceEEEEEccCCC--ccccccchhhhccccceeecCcCccchHHHHh
Confidence 899999999984 33889999999999999999999976654 211111 0000001000000 0
Q ss_pred E--------eecC-CCCccccccc---h------HHHHHHhcCCCCcEEEeCccch---hHHhhh--cc-CcEEEEeccc
Q 039338 152 H--------FHEG-EADKWRYSKG---W------EQFDEENQREPFDVVHSESVAL---PHWLAR--NV-TNLAVSWHGI 207 (493)
Q Consensus 152 ~--------~~~~-~~~~~~~~~~---~------~~~~~~~~~~~~DiI~~~~~~~---~~~~~~--~~-p~~v~~~h~~ 207 (493)
. .... .....+.... . ..+...+++.+||+||+|.... ..++.. .. .+.+.++|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~ 153 (406)
T PRK15427 74 HRASQTLRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGI 153 (406)
T ss_pred hhhhhHhhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEccc
Confidence 0 0000 0000000000 0 0112333577899999996532 222221 11 1378899985
Q ss_pred hhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccC
Q 039338 208 ALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINE 287 (493)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~ 287 (493)
..... ... ..... . ....++++|.++++|+..++.+.+ +|++.+++.++|||+|.
T Consensus 154 d~~~~--~~~----------------~~~~~----~--~~~~~~~ad~vv~~S~~~~~~l~~-~g~~~~ki~vi~nGvd~ 208 (406)
T PRK15427 154 DISSR--EVL----------------NHYTP----E--YQQLFRRGDLMLPISDLWAGRLQK-MGCPPEKIAVSRMGVDM 208 (406)
T ss_pred ccccc--hhh----------------hhhhH----H--HHHHHHhCCEEEECCHHHHHHHHH-cCCCHHHEEEcCCCCCH
Confidence 32110 000 00000 1 124567999999999999999987 58888899999999999
Q ss_pred CCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------c
Q 039338 288 NEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------G 361 (493)
Q Consensus 288 ~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~ 361 (493)
+.|.+.... ..++++.|+++||+.+.||++.+++|++.+.+++++++++++|+|+..+.++++ .
T Consensus 209 ~~f~~~~~~----------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~ 278 (406)
T PRK15427 209 TRFSPRPVK----------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLE 278 (406)
T ss_pred HHcCCCccc----------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCC
Confidence 887653321 122347899999999999999999999999988889999999999877665543 2
Q ss_pred CcEEEecCCCHHHHHHHHHHcCEEEeCCCC-----CCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CH
Q 039338 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLR-----PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NV 435 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~adv~v~ps~~-----~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~ 435 (493)
++|.|.|+++++++.++|+.||++|+||.. .||+|++++|||+||+|||+|+.+|++ |++.++.+|+++++ |+
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~-E~v~~~~~G~lv~~~d~ 357 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIP-ELVEADKSGWLVPENDA 357 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCch-hhhcCCCceEEeCCCCH
Confidence 789999999999999999999999999963 399999999999999999999999998 99999999999999 99
Q ss_pred HHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 039338 436 ESLHKTLEAAVS-EGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 436 ~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i 484 (493)
++++++|.++++ | ++.+++|+++++++++++|+|+.+++++.++|+++
T Consensus 358 ~~la~ai~~l~~~d-~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 358 QALAQRLAAFSQLD-TDELAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 999999999999 7 89999999999999999999999999999999763
No 8
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.3e-42 Score=349.88 Aligned_cols=399 Identities=19% Similarity=0.220 Sum_probs=276.1
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCcccc---C-----CCC--------
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQE---N-----DDG-------- 143 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~---~-----~~~-------- 143 (493)
...+|||++|+.+..|....||.+.++..|.++|++.||+|.|+++....+......... . ..+
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 557 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIW 557 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEE
Confidence 456899999999987778999999999999999999999999999987663211111000 0 000
Q ss_pred -CCCCCCceEeecC-CC-------Cccccc-------cchHHHHHHhc--CCCCcEEEeCccc--h--hHHhh-------
Q 039338 144 -SNNKYPLLHFHEG-EA-------DKWRYS-------KGWEQFDEENQ--REPFDVVHSESVA--L--PHWLA------- 194 (493)
Q Consensus 144 -~~~~~~~~~~~~~-~~-------~~~~~~-------~~~~~~~~~~~--~~~~DiI~~~~~~--~--~~~~~------- 194 (493)
....+..++++.. .+ ..++.. ...+...+.+. ..+|||||+|++. + +.++.
T Consensus 558 ~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~ 637 (977)
T PLN02939 558 TGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGF 637 (977)
T ss_pred EEEECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccC
Confidence 0001122333321 11 001111 01111223332 4699999999873 2 22221
Q ss_pred hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHH-HHHhhccCCeEEEcChhHHHHHHHHh--
Q 039338 195 RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLN-EIRFFNKYAHHVAISDSCGEMLRDVY-- 271 (493)
Q Consensus 195 ~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~ii~~S~~~~~~~~~~~-- 271 (493)
...+ ++.|+|+..+......-.....+.+..... -...+.......++ .+..+..+|.|+++|+.+++.+...+
T Consensus 638 ~~~k-tVfTIHNl~yQG~f~~~~l~~lGL~~~~l~--~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~ 714 (977)
T PLN02939 638 NSAR-ICFTCHNFEYQGTAPASDLASCGLDVHQLD--RPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGR 714 (977)
T ss_pred CCCc-EEEEeCCCcCCCcCCHHHHHHcCCCHHHcc--ChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhcc
Confidence 1234 999999987654321111011111100000 00000000000010 01234468999999999999887533
Q ss_pred ------CCCCCcEEEecCCccCCCccCCcc-----------------cchhhhhhhCCCCC--CcEEEEEecccccccCh
Q 039338 272 ------QIPSERVHVILNGINENEYGVDLS-----------------LGQSFRSRIGIPKN--ASLVLGVAGRLVKDKGH 326 (493)
Q Consensus 272 ------~~~~~~v~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~--~~~~i~~~Gr~~~~Kg~ 326 (493)
+....++.+|+||+|.+.|.|..+ .+..+++++|++.+ +.++|+++||+.++||+
T Consensus 715 GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGi 794 (977)
T PLN02939 715 GLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGV 794 (977)
T ss_pred chHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccCh
Confidence 345678999999999999987653 24668999999853 34789999999999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeCCCcH---HHHhh----h--cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 327 PLLHEAFSKLMVKYPDVYLIVAGSGPWE---QRYKD----F--GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 327 ~~ll~a~~~l~~~~~~~~l~i~G~g~~~---~~~~~----l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
+.+++|+..+.+ ++++|+|+|+|+.. +.+++ + .++|.|+|.++......+|+.||++|+||.+ |+||+
T Consensus 795 DlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~-EPfGL 871 (977)
T PLN02939 795 HLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMF-EPCGL 871 (977)
T ss_pred HHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCc-cCCcH
Confidence 999999998875 47899999999753 23332 2 2689999999877788999999999999965 99999
Q ss_pred HHHHHHHcCCcEEecCCCCCccceeee---------CcceEEECC-CHHHHHHHHHHHHH---cCcHHHHHHHHHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIKGTIVVD---------DEFGFMFAP-NVESLHKTLEAAVS---EGPMRLAQRGEACRQYA 464 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~e~v~~---------~~~G~~~~~-d~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~~ 464 (493)
+++|||+||+|+|++++||+. ++|.+ +++|++|++ |+++|+++|.+++. ++++.+.+|++++.
T Consensus 872 vqLEAMAyGtPPVVs~vGGL~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am--- 947 (977)
T PLN02939 872 TQMIAMRYGSVPIVRKTGGLN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDM--- 947 (977)
T ss_pred HHHHHHHCCCCEEEecCCCCc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---
Confidence 999999999999999999998 77765 579999999 99999999999876 22788888887653
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 465 ASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 465 ~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
.+.|||+.++++|+++|++++...
T Consensus 948 ~~dFSWe~~A~qYeeLY~~ll~~~ 971 (977)
T PLN02939 948 NIDFSWDSSASQYEELYQRAVARA 971 (977)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhh
Confidence 466999999999999999988654
No 9
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=9.2e-42 Score=339.36 Aligned_cols=356 Identities=22% Similarity=0.295 Sum_probs=261.5
Q ss_pred CCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCc-c---cccc-----chHH
Q 039338 99 PGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADK-W---RYSK-----GWEQ 169 (493)
Q Consensus 99 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-----~~~~ 169 (493)
.||+++++.+|+++|+++||+|+|+|...........+. .....+......+.. . .... ....
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEV--------APGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGV 90 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcccc--------CCCcEEEEecCCCcccCCHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997643301111111 111122211111100 0 0000 0111
Q ss_pred HHHHhc--CCCCcEEEeCccc--hhHHh---hhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHH
Q 039338 170 FDEENQ--REPFDVVHSESVA--LPHWL---ARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLK 242 (493)
Q Consensus 170 ~~~~~~--~~~~DiI~~~~~~--~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (493)
+...++ ..+||+||+|... ..+++ ..++| ++.++|+..... ...... ...+. ... .
T Consensus 91 ~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p-~v~t~h~~~~~~--~~~~~~----~~~~~-----~~~-----~ 153 (405)
T TIGR03449 91 LRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVP-LVHTAHTLAAVK--NAALAD----GDTPE-----PEA-----R 153 (405)
T ss_pred HHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCC-EEEeccchHHHH--HHhccC----CCCCc-----hHH-----H
Confidence 222222 3489999999742 22222 23557 999999864321 100000 00000 011 1
Q ss_pred HHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccccc
Q 039338 243 VLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVK 322 (493)
Q Consensus 243 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~ 322 (493)
...+...++++|.++++|+...+.+.+.++.+.+++.+|+||+|.+.+.+. .....+++++++.++ .+|+++||+.+
T Consensus 154 ~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~--~~~~~~~~~~~~~~~-~~i~~~G~l~~ 230 (405)
T TIGR03449 154 RIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPG--DRATERARLGLPLDT-KVVAFVGRIQP 230 (405)
T ss_pred HHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCC--cHHHHHHhcCCCCCC-cEEEEecCCCc
Confidence 112335678999999999999998888788888899999999999887654 234567888887665 77889999999
Q ss_pred ccChHHHHHHHHHHHhhCCC--eEEEEEeCC-----CcHHHHhh----h--cCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 323 DKGHPLLHEAFSKLMVKYPD--VYLIVAGSG-----PWEQRYKD----F--GHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 323 ~Kg~~~ll~a~~~l~~~~~~--~~l~i~G~g-----~~~~~~~~----l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
.||++.+++|++.+.++.++ ++|+++|++ +..+.+++ + .++|.|+|+++++++.++|+.||++++||
T Consensus 231 ~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps 310 (405)
T TIGR03449 231 LKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPS 310 (405)
T ss_pred ccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECC
Confidence 99999999999999887776 999999952 23333333 2 26899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMF 468 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~f 468 (493)
. .|++|++++|||++|+|||+++.|+.+ |++.++.+|+++++ |+++++++|.+++++ ++.+.+|++++++.++ .|
T Consensus 311 ~-~E~~g~~~lEAma~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~d~~~la~~i~~~l~~-~~~~~~~~~~~~~~~~-~f 386 (405)
T TIGR03449 311 Y-NESFGLVAMEAQACGTPVVAARVGGLP-VAVADGETGLLVDGHDPADWADALARLLDD-PRTRIRMGAAAVEHAA-GF 386 (405)
T ss_pred C-CCCcChHHHHHHHcCCCEEEecCCCcH-hhhccCCceEECCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH-hC
Confidence 6 599999999999999999999999988 88999999999998 999999999999998 8899999999999875 59
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 039338 469 TANKMALAYERLFLCIKN 486 (493)
Q Consensus 469 s~~~~~~~~~~~~~~i~~ 486 (493)
||+.+++++.++|++++.
T Consensus 387 sw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 387 SWAATADGLLSSYRDALA 404 (405)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999998763
No 10
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=9.8e-42 Score=340.55 Aligned_cols=370 Identities=17% Similarity=0.160 Sum_probs=247.5
Q ss_pred CCCCchHHHHHHHHHHHHhCCC--EEEEEecCCCCCC-CCCCccccCCCCCCCCCCceEeecCCCCcccc--------cc
Q 039338 97 TTPGGMERHAHTLHVALARRGH--RVHIFTSPVDNIN-SPSISHQENDDGSNNKYPLLHFHEGEADKWRY--------SK 165 (493)
Q Consensus 97 ~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 165 (493)
+..||++.++.+|+++|+++|| +|+|+|....... .+.... .......+. .+......+..+.. ..
T Consensus 23 p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~--~~~~~~~gv-~v~r~~~~~~~~~~~~~~~~~~~~ 99 (439)
T TIGR02472 23 ADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQ--PIERIAPGA-RIVRLPFGPRRYLRKELLWPYLDE 99 (439)
T ss_pred CCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCC--CeeEeCCCc-EEEEecCCCCCCcChhhhhhhHHH
Confidence 4779999999999999999997 9999996532200 000000 000011122 22222221111100 01
Q ss_pred chHHHHHHhcC--CCCcEEEeCccc--hhHHh---hhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 166 GWEQFDEENQR--EPFDVVHSESVA--LPHWL---ARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 166 ~~~~~~~~~~~--~~~DiI~~~~~~--~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
....+.+.+++ .+|||||+|+.. +...+ ..++| ++.+.|+...... . .+.. ... ....+ ...+.
T Consensus 100 ~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p-~V~t~H~~~~~~~-~----~~~~-~~~-~~~~~-~~~~~ 170 (439)
T TIGR02472 100 LADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVP-LIFTGHSLGREKR-R----RLLA-AGL-KPQQI-EKQYN 170 (439)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCC-EEEecccccchhh-h----hccc-CCC-Chhhh-hhhcc
Confidence 11234444433 379999999742 22211 13457 9999998532110 0 0000 000 00000 01111
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHH-HHHHHhCCCCCcEEEecCCccCCCccCCcccc--hhh---hhhhCCCCCCcE
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGE-MLRDVYQIPSERVHVILNGINENEYGVDLSLG--QSF---RSRIGIPKNASL 312 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~-~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~--~~~---r~~~~i~~~~~~ 312 (493)
...+...+...++.+|.++++|+.... .+....+++.+++.+||||+|.+.|.+..... ... +++++.++++ .
T Consensus 171 ~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~ 249 (439)
T TIGR02472 171 ISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEK-P 249 (439)
T ss_pred hHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCC-c
Confidence 112222345678899999999976443 34333367888999999999999887643211 112 2334455555 6
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEE-EEeCCCcHHH---------------Hhh--hcCcEEEecCCCHHH
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLI-VAGSGPWEQR---------------YKD--FGHQVLVMGSMSPAE 374 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~-i~G~g~~~~~---------------~~~--l~~~V~~~g~~~~~~ 374 (493)
+|+++||+.+.||++.+++|++.+.....+.+++ ++|+|+..+. ..+ +.++|.|.|++++++
T Consensus 250 ~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~ 329 (439)
T TIGR02472 250 PILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDD 329 (439)
T ss_pred EEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHH
Confidence 7889999999999999999998643211123333 5687654221 111 237899999999999
Q ss_pred HHHHHHHc----CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcC
Q 039338 375 LRAFYNAI----DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEG 449 (493)
Q Consensus 375 ~~~~~~~a----dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~ 449 (493)
+.++|+.| |++|+||.+ |+||++++|||+||+|||+|+.||.+ |++.++.+|+++++ |+++++++|.+++++
T Consensus 330 ~~~~~~~a~~~~Dv~v~pS~~-E~fg~~~lEAma~G~PvV~s~~gg~~-eiv~~~~~G~lv~~~d~~~la~~i~~ll~~- 406 (439)
T TIGR02472 330 VPELYRLAARSRGIFVNPALT-EPFGLTLLEAAACGLPIVATDDGGPR-DIIANCRNGLLVDVLDLEAIASALEDALSD- 406 (439)
T ss_pred HHHHHHHHhhcCCEEeccccc-CCcccHHHHHHHhCCCEEEeCCCCcH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHhC-
Confidence 99999987 999999965 99999999999999999999999998 99999999999999 999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 450 PMRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
++.+++|++++++++.++|||+.++++|+++++
T Consensus 407 ~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 407 SSQWQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 899999999999999999999999999998863
No 11
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=2.6e-41 Score=338.09 Aligned_cols=392 Identities=19% Similarity=0.223 Sum_probs=269.7
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCcc--ccCCCCC----------CCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISH--QENDDGS----------NNKY 148 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~--~~~~~~~----------~~~~ 148 (493)
|++|||++|+.+.-|....||.+.++..|.++|+++||+|.|+.+....+....... ....... ...+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 467999999998877789999999999999999999999999999876642111010 0000000 0011
Q ss_pred CceEeecCC-----CC-cc---------ccccch----HHHHHHh----cCCCCcEEEeCccc---hhHHhh----hccC
Q 039338 149 PLLHFHEGE-----AD-KW---------RYSKGW----EQFDEEN----QREPFDVVHSESVA---LPHWLA----RNVT 198 (493)
Q Consensus 149 ~~~~~~~~~-----~~-~~---------~~~~~~----~~~~~~~----~~~~~DiI~~~~~~---~~~~~~----~~~p 198 (493)
..++++... ++ .+ +....+ +...++. .+.+|||||+|++. ++.++. ..+|
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~ 160 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRPAPG 160 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCCCCC
Confidence 122222111 00 01 000011 1111222 35799999999852 222222 1235
Q ss_pred cEEEEeccchhhhhhh-hhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHh---C--
Q 039338 199 NLAVSWHGIALESLQS-GIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVY---Q-- 272 (493)
Q Consensus 199 ~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~---~-- 272 (493)
.|.|+|+..+..... .....+ ..+...... ..+ ......-..+..+..+|.|+++|+..++.+.+.+ |
T Consensus 161 -~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~---~~~-~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~ 234 (485)
T PRK14099 161 -TVFTIHNLAFQGQFPRELLGAL-GLPPSAFSL---DGV-EYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLD 234 (485)
T ss_pred -EEEeCCCCCCCCcCCHHHHHHc-CCChHHcCc---hhh-hhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChH
Confidence 999999976533211 111111 000000000 000 0000000123557889999999999999887532 1
Q ss_pred ----CCCCcEEEecCCccCCCccCCccc-----------------chhhhhhhCCCCC-CcEEEEEecccccccChHHHH
Q 039338 273 ----IPSERVHVILNGINENEYGVDLSL-----------------GQSFRSRIGIPKN-ASLVLGVAGRLVKDKGHPLLH 330 (493)
Q Consensus 273 ----~~~~~v~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~~i~~~-~~~~i~~~Gr~~~~Kg~~~ll 330 (493)
.+.+++.+|+||+|.+.|.+..+. +..+++++|++.+ +.++|+++||+.++||++.++
T Consensus 235 ~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li 314 (485)
T PRK14099 235 GLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLL 314 (485)
T ss_pred HHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHH
Confidence 246789999999999988775432 3567888999753 347888999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEeCCCc--HHHHhhh----cCcE-EEecCCCHHHHHHHH-HHcCEEEeCCCCCCCCChHHHHH
Q 039338 331 EAFSKLMVKYPDVYLIVAGSGPW--EQRYKDF----GHQV-LVMGSMSPAELRAFY-NAIDIFVNPTLRPQGLDLTLMEA 402 (493)
Q Consensus 331 ~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~l----~~~V-~~~g~~~~~~~~~~~-~~adv~v~ps~~~eg~~~~~~EA 402 (493)
+|+..+.+. +++|+|+|+|+. .+.++++ ..++ .++|+ ++++..+| +.||++|+||.+ |+||++++||
T Consensus 315 ~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a~aDifv~PS~~-E~fGl~~lEA 389 (485)
T PRK14099 315 EALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQAGADALLVPSRF-EPCGLTQLCA 389 (485)
T ss_pred HHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHhcCCEEEECCcc-CCCcHHHHHH
Confidence 999998763 789999999863 4444443 3455 68998 47888887 579999999975 9999999999
Q ss_pred HHcCCcEEecCCCCCccceeeeC---------cceEEECC-CHHHHHHHHHH---HHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 403 MMSGKPVMASRFPSIKGTIVVDD---------EFGFMFAP-NVESLHKTLEA---AVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 403 m~~G~PvI~s~~~~~~~e~v~~~---------~~G~~~~~-d~~~l~~~i~~---ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
|+||+|+|++++||++ |+|.++ .+|+++++ |+++|+++|.+ +++| ++.+++|+++++ .++||
T Consensus 390 ma~G~ppVvs~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d-~~~~~~l~~~~~---~~~fS 464 (485)
T PRK14099 390 LRYGAVPVVARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD-PVAWRRLQRNGM---TTDVS 464 (485)
T ss_pred HHCCCCcEEeCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHhh---hhcCC
Confidence 9999988889999998 777664 68999999 99999999997 6667 888999999886 35699
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 039338 470 ANKMALAYERLFLCIKNET 488 (493)
Q Consensus 470 ~~~~~~~~~~~~~~i~~~~ 488 (493)
|++++++|+++|+++++++
T Consensus 465 w~~~a~~y~~lY~~l~~~~ 483 (485)
T PRK14099 465 WRNPAQHYAALYRSLVAER 483 (485)
T ss_pred hHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998654
No 12
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=7.6e-41 Score=327.78 Aligned_cols=344 Identities=19% Similarity=0.292 Sum_probs=258.7
Q ss_pred EEEE-EeccCCCC-CCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC----
Q 039338 85 KIAV-FSRKWPIS-TTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA---- 158 (493)
Q Consensus 85 kIl~-v~~~~p~~-~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (493)
||++ +|+.+|.+ ...||+|+++..+++.|+ ++|++++...+. .+..+. ...+..++......
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~ 71 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPG--YPEYTK-------VNDNCDIHYIGFSRIYKR 71 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCC--CCchhh-------ccCCCceEEEEeccccch
Confidence 4544 55577543 368999999999999994 399999987766 222211 01112233321110
Q ss_pred --Cc------cccccchHHHHHHhcCCCCcEEEeCccc-hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCc
Q 039338 159 --DK------WRYSKGWEQFDEENQREPFDVVHSESVA-LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEP 227 (493)
Q Consensus 159 --~~------~~~~~~~~~~~~~~~~~~~DiI~~~~~~-~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 227 (493)
.. ..+......+.......++|+||+|+.. +...+....| +++.++|+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~v~~~h~~~~~----------------- 134 (380)
T PRK15484 72 LFQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLYRQIRERAPQAKLVMHMHNAFEP----------------- 134 (380)
T ss_pred hhhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhHHHHHhhCCCCCEEEEEecccCh-----------------
Confidence 11 1111111222222234679999999753 2222233222 389999964210
Q ss_pred cchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCC
Q 039338 228 MSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIP 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~ 307 (493)
..+.+++.++++|++.++.+.+.+ +..++.+||||+|.+.|.+.. ....+++++++
T Consensus 135 --------------------~~~~~~~~ii~~S~~~~~~~~~~~--~~~~i~vIpngvd~~~~~~~~--~~~~~~~~~~~ 190 (380)
T PRK15484 135 --------------------ELLDKNAKIIVPSQFLKKFYEERL--PNADISIVPNGFCLETYQSNP--QPNLRQQLNIS 190 (380)
T ss_pred --------------------hHhccCCEEEEcCHHHHHHHHhhC--CCCCEEEecCCCCHHHcCCcc--hHHHHHHhCCC
Confidence 223467899999999999988743 567899999999988776543 34567788887
Q ss_pred CCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcH---------HHHh----hhcCcEEEecCCCHHH
Q 039338 308 KNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWE---------QRYK----DFGHQVLVMGSMSPAE 374 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~---------~~~~----~l~~~V~~~g~~~~~~ 374 (493)
.+. .+|+|+||+.+.||++.+++|+..+.+++|+++|+++|+|+.. +.++ +++.+|.|+|++++++
T Consensus 191 ~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~ 269 (380)
T PRK15484 191 PDE-TVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEK 269 (380)
T ss_pred CCC-eEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHH
Confidence 666 6788999999999999999999999988899999999987531 1222 3457899999999999
Q ss_pred HHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceE-EECC-CHHHHHHHHHHHHHcCcHH
Q 039338 375 LRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGF-MFAP-NVESLHKTLEAAVSEGPMR 452 (493)
Q Consensus 375 ~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~-~~~~-d~~~l~~~i~~ll~~~~~~ 452 (493)
+.++|++||++|+||.+.|+||++++|||+||+|||+++.||.+ |++.++.+|+ ++++ |+++++++|.++++| ++.
T Consensus 270 l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~-Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d-~~~ 347 (380)
T PRK15484 270 MHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGIT-EFVLEGITGYHLAEPMTSDSIISDINRTLAD-PEL 347 (380)
T ss_pred HHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcH-hhcccCCceEEEeCCCCHHHHHHHHHHHHcC-HHH
Confidence 99999999999999975699999999999999999999999998 8999999999 4566 999999999999998 664
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 039338 453 LAQRGEACRQYAASMFTANKMALAYERLFLCIK 485 (493)
Q Consensus 453 ~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~ 485 (493)
.++++++++.+.++|+|++++++++++|+...
T Consensus 348 -~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 348 -TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999998753
No 13
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.1e-41 Score=343.92 Aligned_cols=387 Identities=21% Similarity=0.251 Sum_probs=268.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccc---c--CCC-----------CCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQ---E--NDD-----------GSNNK 147 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~---~--~~~-----------~~~~~ 147 (493)
|||++|+.++.|....||.+.++..|.++|+++||+|.|+++............. . .+. .....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 8999999997666679999999999999999999999999987765322111000 0 000 00011
Q ss_pred CCceEeecCCC-----C-ccc--ccc-------chHHHHHHh--cCCCCcEEEeCccc--h-hHHhhhc-----cCcEEE
Q 039338 148 YPLLHFHEGEA-----D-KWR--YSK-------GWEQFDEEN--QREPFDVVHSESVA--L-PHWLARN-----VTNLAV 202 (493)
Q Consensus 148 ~~~~~~~~~~~-----~-~~~--~~~-------~~~~~~~~~--~~~~~DiI~~~~~~--~-~~~~~~~-----~p~~v~ 202 (493)
...++++.... . .+. +.. ......+.+ ...+|||||+|.+. + +.++... +| ++.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~-~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIK-TVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCC-EEE
Confidence 12222221110 0 111 100 111122222 24689999999752 2 2223221 56 999
Q ss_pred Eeccchhhhhhh-hhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHH-hC--------
Q 039338 203 SWHGIALESLQS-GIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDV-YQ-------- 272 (493)
Q Consensus 203 ~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~-~~-------- 272 (493)
++|+..+..... ...... ..+... +.........+.-..+..+..+|.++++|+.+++.+.+. ++
T Consensus 160 TiH~~~~~g~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~ 234 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSEL-GLPPEY----FHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLK 234 (473)
T ss_pred EcCCCccCCcCCHHHHHHc-CCChHH----cCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHH
Confidence 999976432111 111110 000000 000000000001112356789999999999998887642 22
Q ss_pred CCCCcEEEecCCccCCCccCCcc-----------------cchhhhhhhCCCCC-CcEEEEEecccccccChHHHHHHHH
Q 039338 273 IPSERVHVILNGINENEYGVDLS-----------------LGQSFRSRIGIPKN-ASLVLGVAGRLVKDKGHPLLHEAFS 334 (493)
Q Consensus 273 ~~~~~v~vi~ngvd~~~~~~~~~-----------------~~~~~r~~~~i~~~-~~~~i~~~Gr~~~~Kg~~~ll~a~~ 334 (493)
.+..++.+|+||+|.+.|.+..+ .+..+++++|++.+ +.++|+++||+.++||++.+++|+.
T Consensus 235 ~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~ 314 (473)
T TIGR02095 235 ARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALP 314 (473)
T ss_pred hcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHH
Confidence 13569999999999998876432 13457889999862 3478889999999999999999999
Q ss_pred HHHhhCCCeEEEEEeCCC--cHHHHhhh----cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCc
Q 039338 335 KLMVKYPDVYLIVAGSGP--WEQRYKDF----GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP 408 (493)
Q Consensus 335 ~l~~~~~~~~l~i~G~g~--~~~~~~~l----~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~P 408 (493)
++.++ +++|+|+|+|+ ..+.++++ ..++.+.+..+.+++..+|++||++++||.+ |++|++++|||+||+|
T Consensus 315 ~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~-E~~gl~~lEAma~G~p 391 (473)
T TIGR02095 315 ELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRF-EPCGLTQLYAMRYGTV 391 (473)
T ss_pred HHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCc-CCcHHHHHHHHHCCCC
Confidence 99864 59999999984 33444443 3678888888888899999999999999965 9999999999999999
Q ss_pred EEecCCCCCccceeeeC------cceEEECC-CHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 409 VMASRFPSIKGTIVVDD------EFGFMFAP-NVESLHKTLEAAVS----EGPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 409 vI~s~~~~~~~e~v~~~------~~G~~~~~-d~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
||+++.||.. |++.++ ++|+++++ |+++++++|.+++. + ++.+++|++++. ++.|||++++++|
T Consensus 392 vI~s~~gg~~-e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~-~~~~~~~~~~~~---~~~fsw~~~a~~~ 466 (473)
T TIGR02095 392 PIVRRTGGLA-DTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQD-PSLWEALQKNAM---SQDFSWDKSAKQY 466 (473)
T ss_pred eEEccCCCcc-ceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHh---ccCCCcHHHHHHH
Confidence 9999999998 888887 89999999 99999999999888 6 788888888775 3569999999999
Q ss_pred HHHHHHH
Q 039338 478 ERLFLCI 484 (493)
Q Consensus 478 ~~~~~~i 484 (493)
+++|+++
T Consensus 467 ~~~Y~~l 473 (473)
T TIGR02095 467 VELYRSL 473 (473)
T ss_pred HHHHHhC
Confidence 9999874
No 14
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.6e-40 Score=328.73 Aligned_cols=359 Identities=25% Similarity=0.325 Sum_probs=263.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
|||++++..||| ...||++.++.+|+++|.++ |+|+|++..... . . .....+............
T Consensus 1 mkI~~i~~~~~p-~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~--~----~--------~~~~~~~~~~~~~~~~~~ 64 (388)
T TIGR02149 1 MKVTVLTREYPP-NVYGGAGVHVEELTRELARL-MDVDVRCFGDQR--F----D--------SEGLTVKGYRPWSELKEA 64 (388)
T ss_pred CeeEEEecccCc-cccccHhHHHHHHHHHHHHh-cCeeEEcCCCch--h----c--------CCCeEEEEecChhhccch
Confidence 899999999986 24599999999999999987 788887765432 0 0 111111111110000001
Q ss_pred ccchH----HHHHHhcCCCCcEEEeCccc--hhHHhh---hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHh
Q 039338 164 SKGWE----QFDEENQREPFDVVHSESVA--LPHWLA---RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNK 234 (493)
Q Consensus 164 ~~~~~----~~~~~~~~~~~DiI~~~~~~--~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
...+. .+.......++|+||+|+.. +..++. .++| ++.++|+....... ...... .. .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~---~~~~~~-------~~--~ 131 (388)
T TIGR02149 65 NKALGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKP-LVVTAHSLEPLRPW---KEEQLG-------GG--Y 131 (388)
T ss_pred hhhhhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCC-EEEEeecccccccc---cccccc-------cc--h
Confidence 11111 11222234579999999752 222222 3457 99999986432110 000000 00 0
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHh-CCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEE
Q 039338 235 SLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVY-QIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLV 313 (493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~-~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~ 313 (493)
.+... .+...++.+|.++++|+.+++.+.+.+ +++..++.+|+||+|.+.+.+. .....+.+++++.+. ++
T Consensus 132 ~~~~~-----~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~--~~~~~~~~~~~~~~~-~~ 203 (388)
T TIGR02149 132 KLSSW-----AEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPD--DGNVVLDRYGIDRSR-PY 203 (388)
T ss_pred hHHHH-----HHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCC--chHHHHHHhCCCCCc-eE
Confidence 11111 133567899999999999999998876 6677899999999999887654 334577888887766 67
Q ss_pred EEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH----HHhh----hc---CcEEEe-cCCCHHHHHHHHHH
Q 039338 314 LGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ----RYKD----FG---HQVLVM-GSMSPAELRAFYNA 381 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~----~~~~----l~---~~V~~~-g~~~~~~~~~~~~~ 381 (493)
|+|+||+.+.||++.++++++++. ++++++++|+|+... .+++ +. ++|.++ |.++.+++.++|+.
T Consensus 204 i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 280 (388)
T TIGR02149 204 ILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN 280 (388)
T ss_pred EEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh
Confidence 889999999999999999999985 367899988765432 2222 22 346665 67899999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CH------HHHHHHHHHHHHcCcHHHH
Q 039338 382 IDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NV------ESLHKTLEAAVSEGPMRLA 454 (493)
Q Consensus 382 adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~------~~l~~~i~~ll~~~~~~~~ 454 (493)
||++|+||.. |++|++++|||++|+|||+++.++.+ |++.++.+|+++++ |+ ++++++|.+++++ ++.++
T Consensus 281 aDv~v~ps~~-e~~g~~~lEA~a~G~PvI~s~~~~~~-e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~-~~~~~ 357 (388)
T TIGR02149 281 AEVFVCPSIY-EPLGIVNLEAMACGTPVVASATGGIP-EVVVDGETGFLVPPDNSDADGFQAELAKAINILLAD-PELAK 357 (388)
T ss_pred CCEEEeCCcc-CCCChHHHHHHHcCCCEEEeCCCCHH-HHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC-HHHHH
Confidence 9999999965 99999999999999999999999998 89999999999998 87 9999999999998 99999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 039338 455 QRGEACRQYAASMFTANKMALAYERLFLCIK 485 (493)
Q Consensus 455 ~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~ 485 (493)
+|++++++.+.++|||+.+++++.++|++++
T Consensus 358 ~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 358 KMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999864
No 15
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=9.6e-41 Score=328.44 Aligned_cols=355 Identities=23% Similarity=0.282 Sum_probs=265.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
|||++++. | ..||+++++..++++|.++||+|+|++..... ... ...... ......+............
T Consensus 1 mki~~~~~--p---~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~--~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~ 69 (371)
T cd04962 1 MKIGIVCY--P---TYGGSGVVATELGKALARRGHEVHFITSSRPF--RLD-EYSPNI---FFHEVEVPQYPLFQYPPYD 69 (371)
T ss_pred CceeEEEE--e---CCCCccchHHHHHHHHHhcCCceEEEecCCCc--chh-hhccCe---EEEEecccccchhhcchhH
Confidence 89999984 3 56999999999999999999999999875432 100 000000 0000000000000000111
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccc---hhHHhhh------ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHh
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVA---LPHWLAR------NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNK 234 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~---~~~~~~~------~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (493)
......+.+.+++.+||+||+|... ...++.. ++| ++.++|+........ . .
T Consensus 70 ~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~----------~--------~ 130 (371)
T cd04962 70 LALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLP-VVTTLHGTDITLVGQ----------D--------P 130 (371)
T ss_pred HHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCc-EEEEEcCCccccccc----------c--------c
Confidence 1234566666778899999998642 2222221 456 889999753211000 0 0
Q ss_pred HHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEE
Q 039338 235 SLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVL 314 (493)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i 314 (493)
.. ..+ .+..++++|.++++|+.+.+.+.+.++ ...++.+|+||+|...+.+.. ....++++++++++ .++
T Consensus 131 ~~-~~~-----~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~~~~--~~~~~~~~~~~~~~-~~i 200 (371)
T cd04962 131 SF-QPA-----TRFSIEKSDGVTAVSESLRQETYELFD-ITKEIEVIPNFVDEDRFRPKP--DEALKRRLGAPEGE-KVL 200 (371)
T ss_pred cc-hHH-----HHHHHhhCCEEEEcCHHHHHHHHHhcC-CcCCEEEecCCcCHhhcCCCc--hHHHHHhcCCCCCC-eEE
Confidence 00 111 124567899999999999999988653 467899999999987765443 23456677877766 778
Q ss_pred EEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 315 GVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 315 ~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
+++|++.+.||++.+++++.++.++ .+++++++|.|+..+.++++ .++|.|.|+. +++.++|+.||++++|
T Consensus 201 l~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~p 277 (371)
T cd04962 201 IHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLP 277 (371)
T ss_pred EEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeC
Confidence 8999999999999999999999766 56899999999876655443 2689999987 5899999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 389 TLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 389 s~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
|. .|++|++++|||++|+|||+++.++.. |++.++.+|+++++ |++++++++.+++++ ++.+.+|++++++.+.+.
T Consensus 278 s~-~E~~~~~~~EAma~g~PvI~s~~~~~~-e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~ 354 (371)
T cd04962 278 SE-KESFGLAALEAMACGVPVVASNAGGIP-EVVKHGETGFLVDVGDVEAMAEYALSLLED-DELWQEFSRAARNRAAER 354 (371)
T ss_pred CC-cCCCccHHHHHHHcCCCEEEeCCCCch-hhhcCCCceEEcCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 96 599999999999999999999999998 89999999999999 999999999999998 899999999999998888
Q ss_pred cCHHHHHHHHHHHHHHH
Q 039338 468 FTANKMALAYERLFLCI 484 (493)
Q Consensus 468 fs~~~~~~~~~~~~~~i 484 (493)
|+|+.+++++.++|+++
T Consensus 355 fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 355 FDSERIVPQYEALYRRL 371 (371)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999864
No 16
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=5.6e-40 Score=328.78 Aligned_cols=387 Identities=20% Similarity=0.217 Sum_probs=268.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCC--C-cc--ccCCCC-CC------------
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPS--I-SH--QENDDG-SN------------ 145 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~-~~--~~~~~~-~~------------ 145 (493)
|||++|+.+.-|....||.+.++..|.++|+++||+|.|+.+....+.... . .. ...... ..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVTA 85 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEec
Confidence 999999998866789999999999999999999999999999876643210 0 00 000000 00
Q ss_pred CC--CCceEeecCC-----CCccc-------c---c----cchHHHHHHhc--CCCCcEEEeCccc---hhHHhhh----
Q 039338 146 NK--YPLLHFHEGE-----ADKWR-------Y---S----KGWEQFDEENQ--REPFDVVHSESVA---LPHWLAR---- 195 (493)
Q Consensus 146 ~~--~~~~~~~~~~-----~~~~~-------~---~----~~~~~~~~~~~--~~~~DiI~~~~~~---~~~~~~~---- 195 (493)
.. ...++++... ...+. + . .......+.++ ..+|||||+|++. ++.++..
T Consensus 86 ~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~~ 165 (489)
T PRK14098 86 LPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYAD 165 (489)
T ss_pred ccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhhh
Confidence 00 1122222100 00110 0 0 00111222222 4689999999752 2333321
Q ss_pred -----ccCcEEEEeccchhhhhhh-hhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHH
Q 039338 196 -----NVTNLAVSWHGIALESLQS-GIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRD 269 (493)
Q Consensus 196 -----~~p~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~ 269 (493)
.+| +|.|+|+..+..... .....+ .+.. ....+.......-..+..+..+|.|+++|+..++.+.+
T Consensus 166 ~~~~~~~~-~V~TiHn~~~qg~~~~~~~~~~--~~~~-----~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~ 237 (489)
T PRK14098 166 HEFFKDIK-TVLTIHNVYRQGVLPFKVFQKL--LPEE-----VCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAG 237 (489)
T ss_pred ccccCCCC-EEEEcCCCcccCCCCHHHHHHh--CCHH-----hhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCc
Confidence 456 999999875422110 001000 0000 00000000000001224567899999999999998875
Q ss_pred H----hCCC------CCcEEEecCCccCCCccCCccc-----------------chhhhhhhCCCCC-CcEEEEEecccc
Q 039338 270 V----YQIP------SERVHVILNGINENEYGVDLSL-----------------GQSFRSRIGIPKN-ASLVLGVAGRLV 321 (493)
Q Consensus 270 ~----~~~~------~~~v~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~~i~~~-~~~~i~~~Gr~~ 321 (493)
. +|++ ..++.+|+||+|.+.|.+..+. +..+++++|++.+ +.++|+++||+.
T Consensus 238 ~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~ 317 (489)
T PRK14098 238 DGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFD 317 (489)
T ss_pred CCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEecccc
Confidence 2 3443 5799999999999998875431 3456778888743 347889999999
Q ss_pred cccChHHHHHHHHHHHhhCCCeEEEEEeCCCc--HHHHhhh----cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCC
Q 039338 322 KDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW--EQRYKDF----GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGL 395 (493)
Q Consensus 322 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~l----~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~ 395 (493)
++||++.+++|+.++.+ .+++|+|+|+|+. .+.++++ .++|.|.|.++++++..+|++||++|+||. .|++
T Consensus 318 ~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~-~E~~ 394 (489)
T PRK14098 318 DFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGK-IESC 394 (489)
T ss_pred ccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCC-CCCc
Confidence 99999999999999976 3799999999874 3444443 478999999999999999999999999996 5999
Q ss_pred ChHHHHHHHcCCcEEecCCCCCccceeee----CcceEEECC-CHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHh
Q 039338 396 DLTLMEAMMSGKPVMASRFPSIKGTIVVD----DEFGFMFAP-NVESLHKTLEAAV---SEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 396 ~~~~~EAm~~G~PvI~s~~~~~~~e~v~~----~~~G~~~~~-d~~~l~~~i~~ll---~~~~~~~~~~~~~~~~~~~~~ 467 (493)
|++.+|||+||+|+|+++.||.. |.+.+ +++|+++++ |+++++++|.+++ ++ ++.+.++++++ +++.
T Consensus 395 Gl~~lEAma~G~ppVv~~~GGl~-d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~-~~~~~~~~~~~---~~~~ 469 (489)
T PRK14098 395 GMLQMFAMSYGTIPVAYAGGGIV-ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHD-EERWEELVLEA---MERD 469 (489)
T ss_pred hHHHHHHHhCCCCeEEecCCCCc-eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHHH---hcCC
Confidence 99999999999999999999998 66654 679999999 9999999999865 45 66677666554 4567
Q ss_pred cCHHHHHHHHHHHHHHHhh
Q 039338 468 FTANKMALAYERLFLCIKN 486 (493)
Q Consensus 468 fs~~~~~~~~~~~~~~i~~ 486 (493)
|||++++++|+++|+++++
T Consensus 470 fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 470 FSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred CChHHHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 17
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1e-39 Score=323.54 Aligned_cols=360 Identities=19% Similarity=0.183 Sum_probs=256.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecC--CCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEG--EADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 161 (493)
|||+++++.+ ..||+++++..|+++|+++||+|+++|..... ...... ...+...++.... ....+
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~--~~~~~~------~~~~~~~i~~~~~~~~~~~~ 68 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDP--SHCFEE------TKDGTLPVRVRGDWLPRSIF 68 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCc--hhcchh------ccCCeeEEEEEeEEEcchhh
Confidence 8999999865 67999999999999999999999999975432 111110 0111122222211 00111
Q ss_pred ccc----cchHH----HH-HHhcCCCCcEEEeCccchhHHhhhcc--CcEEEEeccchhhhhhhhhhhhhhcCCCCccch
Q 039338 162 RYS----KGWEQ----FD-EENQREPFDVVHSESVALPHWLARNV--TNLAVSWHGIALESLQSGIFQDLTRKPLEPMSL 230 (493)
Q Consensus 162 ~~~----~~~~~----~~-~~~~~~~~DiI~~~~~~~~~~~~~~~--p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (493)
... ..+.. +. ......++|+||+++.....++.... .+++.+.|........ . .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~----------~-----~ 133 (392)
T cd03805 69 GRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKLFSPSKILFYCHFPDQLLAQ----------R-----G 133 (392)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHHhcCCcEEEEEecChHHhcC----------C-----C
Confidence 100 00111 11 12456799999998754333222211 2388888843211000 0 0
Q ss_pred HhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCC-CcEEEecCCccCCCccCCcccchhhhhhhCCCCC
Q 039338 231 AFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPS-ERVHVILNGINENEYGVDLSLGQSFRSRIGIPKN 309 (493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~-~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~ 309 (493)
.+...+.....+. .+...++.+|.++++|+..++.+.+.++... .++.+|+||+|.+.+.+..... .++....+++
T Consensus 134 ~~~~~~~~~~~~~-~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~--~~~~~~~~~~ 210 (392)
T cd03805 134 SLLKRLYRKPFDW-LEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP--DPGLLIPKSG 210 (392)
T ss_pred cHHHHHHHHHHHH-HHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc--cccccccCCC
Confidence 0111122221121 2446788999999999999999988765333 3346999999998776543321 2222333344
Q ss_pred CcEEEEEecccccccChHHHHHHHHHHHhhC---CCeEEEEEeCCCcH--------HHH----hh---hcCcEEEecCCC
Q 039338 310 ASLVLGVAGRLVKDKGHPLLHEAFSKLMVKY---PDVYLIVAGSGPWE--------QRY----KD---FGHQVLVMGSMS 371 (493)
Q Consensus 310 ~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~---~~~~l~i~G~g~~~--------~~~----~~---l~~~V~~~g~~~ 371 (493)
. ++|+++||+.+.||++.+++++.++.++. ++++|+++|+|+.+ +.+ ++ +.++|.|+|+++
T Consensus 211 ~-~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 211 K-KTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred c-eEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 4 78899999999999999999999998887 79999999987542 222 22 237899999999
Q ss_pred HHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcH
Q 039338 372 PAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPM 451 (493)
Q Consensus 372 ~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~ 451 (493)
.+++..+|+.||++++||. .|+||++++|||+||+|||+++.++.. |++.++.+|+++++|+++++++|.+++++ ++
T Consensus 290 ~~~~~~~l~~ad~~l~~s~-~E~~g~~~lEAma~G~PvI~s~~~~~~-e~i~~~~~g~~~~~~~~~~a~~i~~l~~~-~~ 366 (392)
T cd03805 290 DSQKELLLSSARALLYTPS-NEHFGIVPLEAMYAGKPVIACNSGGPL-ETVVDGETGFLCEPTPEEFAEAMLKLAND-PD 366 (392)
T ss_pred hHHHHHHHhhCeEEEECCC-cCCCCchHHHHHHcCCCEEEECCCCcH-HHhccCCceEEeCCCHHHHHHHHHHHHhC-hH
Confidence 9999999999999999996 599999999999999999999999988 88899899999987999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 452 RLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 452 ~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
.+++++++++++++++|+|+.+++++
T Consensus 367 ~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 367 LADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999999999999998764
No 18
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.3e-39 Score=322.25 Aligned_cols=356 Identities=18% Similarity=0.202 Sum_probs=249.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC---Ccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA---DKW 161 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 161 (493)
|||||+.+||. ....|+++|.++||+|+++|..... .... +...+.+..... ...
T Consensus 1 ~il~~~~~~p~---------~~~~la~~L~~~G~~v~~~~~~~~~--~~~~-----------~v~~~~~~~~~~~~~~~~ 58 (396)
T cd03818 1 RILFVHQNFPG---------QFRHLAPALAAQGHEVVFLTEPNAA--PPPG-----------GVRVVRYRPPRGPTSGTH 58 (396)
T ss_pred CEEEECCCCch---------hHHHHHHHHHHCCCEEEEEecCCCC--CCCC-----------CeeEEEecCCCCCCCCCC
Confidence 69999999974 2567999999999999999988765 1110 111111111100 011
Q ss_pred ccc-----------cchHHHHHH-hcCCCCcEEEeCccchhHH-hhh---ccCcEEEEeccchhhhhhhhhhhhhhcCCC
Q 039338 162 RYS-----------KGWEQFDEE-NQREPFDVVHSESVALPHW-LAR---NVTNLAVSWHGIALESLQSGIFQDLTRKPL 225 (493)
Q Consensus 162 ~~~-----------~~~~~~~~~-~~~~~~DiI~~~~~~~~~~-~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~ 225 (493)
.+. .....+... .+..+||+||+|....... +.. ..| ++...|-+. .....+. ...+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~-~v~~~~~~~-~~~~~~~----~~~~~ 132 (396)
T cd03818 59 PYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAP-LIGYFEFYY-RAEGADV----GFDPE 132 (396)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCC-EEEEEeeee-cCCCCCC----CCCCC
Confidence 111 111122222 2456899999997533222 222 234 555444211 1101110 00000
Q ss_pred CccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhC
Q 039338 226 EPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIG 305 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~ 305 (493)
...... ...+...+.......+..+|.++++|++.++.+.+.+ .+++.+|+||+|.+.|.+........+...+
T Consensus 133 ~~~~~~---~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~ 206 (396)
T cd03818 133 FPPSLD---DALRLRNRNALILLALAQADAGVSPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDPQARLRLPNGRV 206 (396)
T ss_pred CCCchh---HHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhh---ccceEEeCCCccccccCCCchhhhccccccc
Confidence 000000 0011111111122567899999999999999887754 3789999999999988765543322333333
Q ss_pred CCCCCcEEEEEecc-cccccChHHHHHHHHHHHhhCCCeEEEEEeCCC------------cHH-HHhhh-----cCcEEE
Q 039338 306 IPKNASLVLGVAGR-LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP------------WEQ-RYKDF-----GHQVLV 366 (493)
Q Consensus 306 i~~~~~~~i~~~Gr-~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~------------~~~-~~~~l-----~~~V~~ 366 (493)
++.++ .+|+|+|| +.+.||++.+++|+..+.++.++++++|+|++. +.+ ..+++ .++|.|
T Consensus 207 ~~~~~-~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f 285 (396)
T cd03818 207 LTPGD-EVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHF 285 (396)
T ss_pred CCCCC-eEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEE
Confidence 44454 67889997 999999999999999999888999999999732 111 23333 268999
Q ss_pred ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHH
Q 039338 367 MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAA 445 (493)
Q Consensus 367 ~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~l 445 (493)
+|+++++++.++|+.||++++||. +|++|++++|||+||+|||+++.++.. |++.++.+|+++++ |+++++++|.++
T Consensus 286 ~G~v~~~~~~~~l~~adv~v~~s~-~e~~~~~llEAmA~G~PVIas~~~g~~-e~i~~~~~G~lv~~~d~~~la~~i~~l 363 (396)
T cd03818 286 LGRVPYDQYLALLQVSDVHVYLTY-PFVLSWSLLEAMACGCLVVGSDTAPVR-EVITDGENGLLVDFFDPDALAAAVIEL 363 (396)
T ss_pred eCCCCHHHHHHHHHhCcEEEEcCc-ccccchHHHHHHHCCCCEEEcCCCCch-hhcccCCceEEcCCCCHHHHHHHHHHH
Confidence 999999999999999999999995 699999999999999999999999998 89999999999998 999999999999
Q ss_pred HHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 039338 446 VSEGPMRLAQRGEACRQYAASMFTANKMALAYE 478 (493)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 478 (493)
+++ ++.+.+|++++++.++++|||+.++++|.
T Consensus 364 l~~-~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 364 LDD-PARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HhC-HHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999 89999999999999999999999999885
No 19
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.1e-39 Score=330.98 Aligned_cols=366 Identities=16% Similarity=0.153 Sum_probs=256.2
Q ss_pred CCCCce-EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCC--------------EEEEEecCCCCCCCCCCccccCCCC
Q 039338 79 PSKFTL-KIAVFSRKWPISTTPGGMERHAHTLHVALARRGH--------------RVHIFTSPVDNINSPSISHQENDDG 143 (493)
Q Consensus 79 ~~~~~m-kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~v~~~~~~~~~~~~~~~~~~~~~ 143 (493)
++.++. ||+++.... ..||+|+++..|+.+|.+.++ +|.+++.....-.......
T Consensus 276 ~~~~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~------ 345 (694)
T PRK15179 276 GPESFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAAT------ 345 (694)
T ss_pred CCCCCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHH------
Confidence 345566 899999865 779999999999999999854 4555433211100011110
Q ss_pred CCCCCCceEeecCCCCcc--------------------ccccchHHHHHHhcCCCCcEEEeCccch--hHHh---hhccC
Q 039338 144 SNNKYPLLHFHEGEADKW--------------------RYSKGWEQFDEENQREPFDVVHSESVAL--PHWL---ARNVT 198 (493)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~DiI~~~~~~~--~~~~---~~~~p 198 (493)
....+..+..+....... ........+.+.+++.+|||||+|+... ...+ ..++|
T Consensus 346 L~~~Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvP 425 (694)
T PRK15179 346 LADAGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVP 425 (694)
T ss_pred HHhCCCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCC
Confidence 111122222222111100 0112345667777888999999997521 1122 23457
Q ss_pred cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcE
Q 039338 199 NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERV 278 (493)
Q Consensus 199 ~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v 278 (493)
.++.+.|+...... .. .+ ...+..+.+.+ .....+.+++.|+..++.+.+.++++.+++
T Consensus 426 vIv~t~h~~~~~~~-~~---------------~~-~~~~~~l~~~l----~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI 484 (694)
T PRK15179 426 RIVLSVRTMPPVDR-PD---------------RY-RVEYDIIYSEL----LKMRGVALSSNSQFAAHRYADWLGVDERRI 484 (694)
T ss_pred EEEEEeCCCccccc-hh---------------HH-HHHHHHHHHHH----HhcCCeEEEeCcHHHHHHHHHHcCCChhHE
Confidence 33446676432100 00 00 01111111111 112345677778888888887788888999
Q ss_pred EEecCCccCCCccCCcccchhhhhh--hCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHH
Q 039338 279 HVILNGINENEYGVDLSLGQSFRSR--IGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQR 356 (493)
Q Consensus 279 ~vi~ngvd~~~~~~~~~~~~~~r~~--~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~ 356 (493)
.|||||+|...|.+.+.... .+.. ...+++ .++|+++||+.+.||++.+++|+.++.++.++++|+|+|+|+..+.
T Consensus 485 ~VI~NGVd~~~f~~~~~~~~-~~~~~~~~~~~~-~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~ 562 (694)
T PRK15179 485 PVVYNGLAPLKSVQDDACTA-MMAQFDARTSDA-RFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLES 562 (694)
T ss_pred EEECCCcCHHhcCCCchhhH-HHHhhccccCCC-CeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHH
Confidence 99999999887764332211 1111 122333 3789999999999999999999999988889999999999987766
Q ss_pred Hhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEE
Q 039338 357 YKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFM 430 (493)
Q Consensus 357 ~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~ 430 (493)
++++ .++|.|.|+. +++..+|+.+|++|+||. .||||++++|||+||+|||+|+.||.+ |++.++.+|++
T Consensus 563 L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~-~Egfp~vlLEAMA~G~PVVat~~gG~~-EiV~dg~~GlL 638 (694)
T PRK15179 563 VREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSR-FEGLPNVLIEAQFSGVPVVTTLAGGAG-EAVQEGVTGLT 638 (694)
T ss_pred HHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccc-cccchHHHHHHHHcCCeEEEECCCChH-HHccCCCCEEE
Confidence 6543 2889999997 589999999999999996 599999999999999999999999998 99999999999
Q ss_pred ECC-C--HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 431 FAP-N--VESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 431 ~~~-d--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
+++ | +++++++|.+++.+ ......+++++++++.++|||+.+++++.++|+
T Consensus 639 v~~~d~~~~~La~aL~~ll~~-l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 639 LPADTVTAPDVAEALARIHDM-CAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred eCCCCCChHHHHHHHHHHHhC-hhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 986 5 46999999998887 555678889999999989999999999999995
No 20
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=4.4e-39 Score=319.72 Aligned_cols=351 Identities=23% Similarity=0.278 Sum_probs=255.8
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCc-------ccc-ccchHH
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADK-------WRY-SKGWEQ 169 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~ 169 (493)
..||+++++.+|+++|+++||+|+|++..... ...... .......+......+.. +.. ......
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (398)
T cd03800 19 DTGGQNVYVLELARALARLGHEVDIFTRRIDD--ALPPIV------ELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADD 90 (398)
T ss_pred CCCceeehHHHHHHHHhccCceEEEEEecCCc--ccCCcc------ccccceEEEecccccccCCChhhcchhHHHHHHH
Confidence 57999999999999999999999999975544 111100 00111112111111100 000 112233
Q ss_pred HHHHhcCC--CCcEEEeCccc--hhHH---hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHH
Q 039338 170 FDEENQRE--PFDVVHSESVA--LPHW---LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLK 242 (493)
Q Consensus 170 ~~~~~~~~--~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (493)
+.+.++.. +||+||+|... .... ...++| ++.+.|+........ .. . ........+
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~-----~~---~--------~~~~~~~~~ 153 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIP-LVHTFHSLGAVKRRH-----LG---A--------ADTYEPARR 153 (398)
T ss_pred HHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCc-eEEEeecccccCCcc-----cc---c--------ccccchhhh
Confidence 44444455 99999998642 1111 123456 888999754221100 00 0 000011112
Q ss_pred HHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccccc
Q 039338 243 VLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVK 322 (493)
Q Consensus 243 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~ 322 (493)
...+...++.+|.++++|+...+.+.+.++.+..++.+|+||+|.+.+.+.... ...++.++.+.++ ++|+|+||+.+
T Consensus 154 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~-~~~~~~~~~~~~~-~~i~~~gr~~~ 231 (398)
T cd03800 154 IEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRA-EARRARLLRDPDK-PRILAVGRLDP 231 (398)
T ss_pred hhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccch-hhHHHhhccCCCC-cEEEEEccccc
Confidence 223446788999999999999999988776666679999999999877654332 1224555555555 78889999999
Q ss_pred ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH----------HHhhh--cCcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 323 DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ----------RYKDF--GHQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 323 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~----------~~~~l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
.||++.+++++..+.++.++++++++|++.... ..+++ .++|.|+|+++.+++.++|+.||++++||.
T Consensus 232 ~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~ 311 (398)
T cd03800 232 RKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPAL 311 (398)
T ss_pred ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccc
Confidence 999999999999999888899999999875421 11222 378999999999999999999999999996
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
. |++|++++|||++|+|||+++.++.. +++.++++|+++++ |+++++++|.+++++ ++.++++++++++.++++||
T Consensus 312 ~-e~~~~~l~Ea~a~G~Pvi~s~~~~~~-e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s 388 (398)
T cd03800 312 Y-EPFGLTALEAMACGLPVVATAVGGPR-DIVVDGVTGLLVDPRDPEALAAALRRLLTD-PALRRRLSRAGLRRARARYT 388 (398)
T ss_pred c-cccCcHHHHHHhcCCCEEECCCCCHH-HHccCCCCeEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCC
Confidence 4 99999999999999999999999988 88999999999998 999999999999999 89999999999999988899
Q ss_pred HHHHHHHHH
Q 039338 470 ANKMALAYE 478 (493)
Q Consensus 470 ~~~~~~~~~ 478 (493)
|+.++++|+
T Consensus 389 ~~~~~~~~~ 397 (398)
T cd03800 389 WERVAARLL 397 (398)
T ss_pred HHHHHHHHh
Confidence 999999886
No 21
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.9e-38 Score=328.99 Aligned_cols=395 Identities=16% Similarity=0.133 Sum_probs=267.8
Q ss_pred CCCCceEEEEEecc-CC--------CCCCCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCC-C----CCcccc---
Q 039338 79 PSKFTLKIAVFSRK-WP--------ISTTPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINS-P----SISHQE--- 139 (493)
Q Consensus 79 ~~~~~mkIl~v~~~-~p--------~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~-~----~~~~~~--- 139 (493)
...++|.|++|+.+ .+ -....||...|+.+|+++|++.| |+|+++|........ . ..+...
T Consensus 165 ~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~ 244 (1050)
T TIGR02468 165 QKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRS 244 (1050)
T ss_pred cccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccc
Confidence 34578999999873 22 13567999999999999999998 899999987653100 0 000000
Q ss_pred -----CCCCCCCCCCceEeecCCCC-ccccccchHHH-------HHHh--------------cCCCCcEEEeCcc--chh
Q 039338 140 -----NDDGSNNKYPLLHFHEGEAD-KWRYSKGWEQF-------DEEN--------------QREPFDVVHSESV--ALP 190 (493)
Q Consensus 140 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~--------------~~~~~DiI~~~~~--~~~ 190 (493)
.......+...+++...... .......|..+ ...+ ....||+||+|.+ +..
T Consensus 245 ~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~a 324 (1050)
T TIGR02468 245 SENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDS 324 (1050)
T ss_pred cccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHH
Confidence 00001112222333322221 11111112111 1111 0124999999964 222
Q ss_pred HHhh---hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHH
Q 039338 191 HWLA---RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEML 267 (493)
Q Consensus 191 ~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~ 267 (493)
++.. .++| +|.|.|...-.......... ....... ...+....+...|...+..||.||+.|....+.+
T Consensus 325 a~~L~~~lgVP-~V~T~HSLgr~K~~~ll~~g--~~~~~~~-----~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq 396 (1050)
T TIGR02468 325 AALLSGALNVP-MVLTGHSLGRDKLEQLLKQG--RMSKEEI-----NSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQ 396 (1050)
T ss_pred HHHHHHhhCCC-EEEECccchhhhhhhhcccc--ccccccc-----ccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHH
Confidence 2222 3568 99999975311100000000 0000000 0112223344456678999999999999999876
Q ss_pred HHHhC----------------------CCCCcEEEecCCccCCCccCCcccch-------------------hhhhhhCC
Q 039338 268 RDVYQ----------------------IPSERVHVILNGINENEYGVDLSLGQ-------------------SFRSRIGI 306 (493)
Q Consensus 268 ~~~~~----------------------~~~~~v~vi~ngvd~~~~~~~~~~~~-------------------~~r~~~~i 306 (493)
...|+ ....++.|||||+|.+.|.+...... .++ .+..
T Consensus 397 ~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~-r~~~ 475 (1050)
T TIGR02468 397 WGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIM-RFFT 475 (1050)
T ss_pred HHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHH-hhcc
Confidence 56553 12348999999999999987432110 111 2223
Q ss_pred CCCCcEEEEEecccccccChHHHHHHHHHHHhh--CCCeEEEEEeCCCcHH-----------HHh----hh--cCcEEEe
Q 039338 307 PKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVK--YPDVYLIVAGSGPWEQ-----------RYK----DF--GHQVLVM 367 (493)
Q Consensus 307 ~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~--~~~~~l~i~G~g~~~~-----------~~~----~l--~~~V~~~ 367 (493)
++++ .+|+++||+.+.||++.+++|+..+.+. .+++. +|+|+++..+ .+. ++ .++|.|.
T Consensus 476 ~pdk-pvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~Fl 553 (1050)
T TIGR02468 476 NPRK-PMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYP 553 (1050)
T ss_pred cCCC-cEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEec
Confidence 4444 6788999999999999999999999753 24665 4668764321 111 22 3889999
Q ss_pred cCCCHHHHHHHHHHc----CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHH
Q 039338 368 GSMSPAELRAFYNAI----DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTL 442 (493)
Q Consensus 368 g~~~~~~~~~~~~~a----dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i 442 (493)
|+++++++.++|+.| |++|+||.+ |+||++++|||+||+|||+|+.||.+ |++.++.+|+++++ |+++|+++|
T Consensus 554 G~v~~edvp~lYr~Ad~s~DVFV~PS~~-EgFGLvlLEAMAcGlPVVASdvGG~~-EII~~g~nGlLVdP~D~eaLA~AL 631 (1050)
T TIGR02468 554 KHHKQSDVPDIYRLAAKTKGVFINPAFI-EPFGLTLIEAAAHGLPMVATKNGGPV-DIHRVLDNGLLVDPHDQQAIADAL 631 (1050)
T ss_pred CCCCHHHHHHHHHHhhhcCCeeeCCccc-CCCCHHHHHHHHhCCCEEEeCCCCcH-HHhccCCcEEEECCCCHHHHHHHH
Confidence 999999999999988 699999965 99999999999999999999999998 99999999999999 999999999
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 443 EAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 443 ~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
.+++++ ++.+++|++++++.+.. |+|+.++++|.+.+..+..++
T Consensus 632 ~~LL~D-pelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 632 LKLVAD-KQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHhhC-HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHhccC
Confidence 999999 99999999999999875 999999999999999887654
No 22
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=6.8e-39 Score=314.39 Aligned_cols=371 Identities=15% Similarity=0.122 Sum_probs=241.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCC-C---CCCceEeecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSN-N---KYPLLHFHEGEAD 159 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~ 159 (493)
||||+|...+ ..||+|+.+..|++.|.++||+|.++...... ....+..+.+.... . .....+.......
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKG--GKESVSHQNYPQVIKHTPRMTAMANIALFRLF 74 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCC--cccccccCCcceEEEecccHHHHHHHHHHHhc
Confidence 8999999865 88999999999999999999999999987655 11111100000000 0 0000011000001
Q ss_pred ccccccchHHHHHHh-cCCCCcEEEeCccc-----hhHH---------hhhccCcEEEEeccchhhhhhhhhhhhhh---
Q 039338 160 KWRYSKGWEQFDEEN-QREPFDVVHSESVA-----LPHW---------LARNVTNLAVSWHGIALESLQSGIFQDLT--- 221 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~-~~~~~DiI~~~~~~-----~~~~---------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~--- 221 (493)
............+.+ ++.+|||||+|... +... ....+| +|+|+||.|....+..+.....
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~p-iV~TlHd~~~~tg~c~~~~~C~~~~ 153 (405)
T PRK10125 75 NRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVT-LVWTLHDHWSVTGRCAFTDGCEGWK 153 (405)
T ss_pred chhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCC-EEEecccccccCCCcCCCccccccc
Confidence 111223334444444 58899999999642 2111 112356 9999999987643322211110
Q ss_pred -cCCCCccc-------hHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCC
Q 039338 222 -RKPLEPMS-------LAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVD 293 (493)
Q Consensus 222 -~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~ 293 (493)
.....+.. ..........-.+.. ...++.++.++++|+++++.+.+.++ ..++.+|+||+|.+.+.+.
T Consensus 154 ~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~--~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~ 229 (405)
T PRK10125 154 TGCQKCPTLNNYPPVKVDRAHQLVAGKRQLF--REMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAIL 229 (405)
T ss_pred ccCCCCCCccCCCCCccchHHHHHHHHHHHH--HHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCccccccc
Confidence 01111100 000111111111111 13345678999999999999887654 4789999999997533221
Q ss_pred cccchhhhhhhCCCCCCcEEEEEeccc--ccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCC-
Q 039338 294 LSLGQSFRSRIGIPKNASLVLGVAGRL--VKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSM- 370 (493)
Q Consensus 294 ~~~~~~~r~~~~i~~~~~~~i~~~Gr~--~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~- 370 (493)
+.. ...+ .+.++ .+|+++|+. .+.||++.+++|+..+. ++++|+++|+|+.. ..++|.++|+.
T Consensus 230 ~~~-~~~~----~~~~~-~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~~~L~ivG~g~~~-----~~~~v~~~g~~~ 295 (405)
T PRK10125 230 AEL-PPVR----ETQGK-PKIAVVAHDLRYDGKTDQQLVREMMALG---DKIELHTFGKFSPF-----TAGNVVNHGFET 295 (405)
T ss_pred ccc-cccc----cCCCC-CEEEEEEeccccCCccHHHHHHHHHhCC---CCeEEEEEcCCCcc-----cccceEEecCcC
Confidence 110 0011 12233 578899984 36899999999999874 47999999987532 13678999987
Q ss_pred CHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcC
Q 039338 371 SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEG 449 (493)
Q Consensus 371 ~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~ 449 (493)
+.+++.++|++||++|+||. .||||++++|||+||+|||+|+.||++ |++.++ +|+++++ |+++|++.+...+.+
T Consensus 296 ~~~~l~~~y~~aDvfV~pS~-~Egfp~vilEAmA~G~PVVat~~gG~~-Eiv~~~-~G~lv~~~d~~~La~~~~~~~~~- 371 (405)
T PRK10125 296 DKRKLMSALNQMDALVFSSR-VDNYPLILCEALSIGVPVIATHSDAAR-EVLQKS-GGKTVSEEEVLQLAQLSKPEIAQ- 371 (405)
T ss_pred CHHHHHHHHHhCCEEEECCc-cccCcCHHHHHHHcCCCEEEeCCCChH-HhEeCC-cEEEECCCCHHHHHhccCHHHHH-
Confidence 56889999999999999997 499999999999999999999999998 877664 9999999 999999864322211
Q ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 039338 450 PMRLAQRGEACRQYAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i 484 (493)
. ....+.+++++.+.+.||++.++++|+++|+++
T Consensus 372 ~-~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 372 A-VFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred H-hhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 0 011133568888888899999999999999864
No 23
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.5e-38 Score=311.39 Aligned_cols=347 Identities=21% Similarity=0.309 Sum_probs=262.1
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..+ ..||+++.+.+++++|.++||+|++++..... ...... ..................
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~ 65 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGES--EVKPPI---------DATIILNLNMSKNPLSFL 65 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCC--Cccchh---------hccceEEecccccchhhH
Confidence 588888765 67999999999999999999999999875543 111000 001111111111122233
Q ss_pred cchHHHHHHhcCCCCcEEEeCccch--hHHhhh---ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVAL--PHWLAR---NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~--~~~~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
..+..+.+.+++.+||+||+|.... ...+.+ ..++++.+.|+.... ......
T Consensus 66 ~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~-----------------------~~~~~~ 122 (360)
T cd04951 66 LALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEG-----------------------GRLRML 122 (360)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCch-----------------------hHHHHH
Confidence 3344566667788999999987532 121111 123388888875311 011111
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
+.+ .....++.++++|+...+.+.+..+++.+++.++|||+|...+.+.......+++++++++++ ++++++|+
T Consensus 123 ~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~ 196 (360)
T cd04951 123 AYR-----LTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDT-FVILAVGR 196 (360)
T ss_pred HHH-----HHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCC-EEEEEEee
Confidence 111 122346778899999999998866677889999999999888776655556678888887766 78889999
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh----hc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD----FG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~----l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+.+.||++.+++++.++.++.++++|+++|+|+..+.+++ ++ ++|.|+|++ +++.++|+.||++++||.. |
T Consensus 197 ~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~-e 273 (360)
T cd04951 197 LVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAW-E 273 (360)
T ss_pred CchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccc-c
Confidence 9999999999999999998888999999999987665544 22 689999987 6899999999999999965 9
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHH
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANK 472 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 472 (493)
|+|++++|||++|+|||+++.++.. |++.+ +|+++++ |+++++++|.++++++++.+..++++ ++.+.+.|||+.
T Consensus 274 ~~~~~~~Ea~a~G~PvI~~~~~~~~-e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~ 349 (360)
T cd04951 274 GFGLVVAEAMACELPVVATDAGGVR-EVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINS 349 (360)
T ss_pred CCChHHHHHHHcCCCEEEecCCChh-hEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHH
Confidence 9999999999999999999999988 77765 7889988 99999999999997646666667666 888888899999
Q ss_pred HHHHHHHHHH
Q 039338 473 MALAYERLFL 482 (493)
Q Consensus 473 ~~~~~~~~~~ 482 (493)
++++|.++|+
T Consensus 350 ~~~~~~~~y~ 359 (360)
T cd04951 350 IVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHhh
Confidence 9999999996
No 24
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=5.5e-39 Score=313.99 Aligned_cols=329 Identities=23% Similarity=0.341 Sum_probs=251.6
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQRE 177 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (493)
..||+++++.+++++|+++||+|++++..... ....+. .+...+.........+........+.+.+++.
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRL--VAELEA--------EGSRHIKLPFISKNPLRILLNVARLRRLIREE 77 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCch--HHHHHh--------cCCeEEEccccccchhhhHHHHHHHHHHHHHc
Confidence 56999999999999999999999999865432 111100 11111111111112222233445566667788
Q ss_pred CCcEEEeCccc--hhHH---hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhcc
Q 039338 178 PFDVVHSESVA--LPHW---LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNK 252 (493)
Q Consensus 178 ~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (493)
+||+||+|+.. .... ...++| ++.++|+...... . ...++.+
T Consensus 78 ~~dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~---------------------------~-----~~~~~~~ 124 (355)
T cd03819 78 KVDIVHARSRAPAWSAYLAARRTRPP-FVTTVHGFYSVNF---------------------------R-----YNAIMAR 124 (355)
T ss_pred CCCEEEECCCchhHHHHHHHHhcCCC-EEEEeCCchhhHH---------------------------H-----HHHHHHh
Confidence 99999998742 1111 123456 8999998643210 0 1134568
Q ss_pred CCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccc---hhhhhhhCCCCCCcEEEEEecccccccChHHH
Q 039338 253 YAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLG---QSFRSRIGIPKNASLVLGVAGRLVKDKGHPLL 329 (493)
Q Consensus 253 ~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~---~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~l 329 (493)
+|.++++|+...+.+.+.++++.+++.+||||+|.+.+.+..... ..++++++.+++. ++++++||+.+.||++.+
T Consensus 125 ~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~Gr~~~~Kg~~~l 203 (355)
T cd03819 125 GDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGK-PVILLPGRLTRWKGQEVF 203 (355)
T ss_pred cCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCc-eEEEEeeccccccCHHHH
Confidence 999999999999999977888888999999999998876543321 1256677766665 788899999999999999
Q ss_pred HHHHHHHHhhCCCeEEEEEeCCCcHHHH--------hh--hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHH
Q 039338 330 HEAFSKLMVKYPDVYLIVAGSGPWEQRY--------KD--FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTL 399 (493)
Q Consensus 330 l~a~~~l~~~~~~~~l~i~G~g~~~~~~--------~~--l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~ 399 (493)
++++..+++.+++++++++|.++..+.+ .+ +.++|.|+|+ .+++.++|++||++++||.+.|++|+++
T Consensus 204 i~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l 281 (355)
T cd03819 204 IEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTA 281 (355)
T ss_pred HHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHH
Confidence 9999999988789999999987654322 22 2378999999 4799999999999999995569999999
Q ss_pred HHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHH
Q 039338 400 MEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKM 473 (493)
Q Consensus 400 ~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 473 (493)
+|||++|+|||+++.++.. |++.++.+|+++++ |+++++++|..++..+++.+.++++++++.++++|+++.+
T Consensus 282 ~EA~a~G~PvI~~~~~~~~-e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 282 VEAQAMGRPVIASDHGGAR-ETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred HHHHhcCCCEEEcCCCCcH-HHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999999999999987 88999889999998 9999999997776644899999999999999999999863
No 25
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=3.2e-38 Score=309.70 Aligned_cols=348 Identities=22% Similarity=0.261 Sum_probs=263.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
|||++++.. ...||+++++..++++|.++||+|++++....
T Consensus 1 MkIl~~~~~----~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------------------------------- 41 (365)
T cd03825 1 MKVLHLNTS----DISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------------------------------- 41 (365)
T ss_pred CeEEEEecC----CCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-----------------------------------
Confidence 899999874 26699999999999999999999999986432
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccc-----hhHHhh--hccCcEEEEeccchhhhhhhhhhhhhh---cCC-CCccchHh
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVA-----LPHWLA--RNVTNLAVSWHGIALESLQSGIFQDLT---RKP-LEPMSLAF 232 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~-----~~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~---~~~-~~~~~~~~ 232 (493)
.+.+.++..+||+||+|... +..+.. +++| +++++|+.+............. ... ..+.....
T Consensus 42 -----~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~-~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (365)
T cd03825 42 -----ALISKIEIINADIVHLHWIHGGFLSIEDLSKLLDRKP-VVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSY 115 (365)
T ss_pred -----hhhhChhcccCCEEEEEccccCccCHHHHHHHHcCCC-EEEEcccCcccccccCCccccccccccCCCCCCCCCC
Confidence 22233456789999998631 111111 2567 9999999765432211110000 000 00000000
Q ss_pred Hh-HHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCc
Q 039338 233 NK-SLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNAS 311 (493)
Q Consensus 233 ~~-~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~ 311 (493)
.. .+.....+... ..+...++.++++|++..+.+.+.++++..++.++|||+|.+.+.+.. ....++.++++.++
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~--~~~~~~~~~~~~~~- 191 (365)
T cd03825 116 PEKDLSRWIWRRKR-KAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRD--KREARKRLGLPADK- 191 (365)
T ss_pred CcccHHHHHHHHHH-HHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCc--HHHHHHHhCCCCCC-
Confidence 00 11111111111 112256778999999999999887667788999999999998875433 34567788887776
Q ss_pred EEEEEeccccc--ccChHHHHHHHHHHHhh-CCCeEEEEEeCCCcHHHHhhhcCcEEEecCCC-HHHHHHHHHHcCEEEe
Q 039338 312 LVLGVAGRLVK--DKGHPLLHEAFSKLMVK-YPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMS-PAELRAFYNAIDIFVN 387 (493)
Q Consensus 312 ~~i~~~Gr~~~--~Kg~~~ll~a~~~l~~~-~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~-~~~~~~~~~~adv~v~ 387 (493)
.++++.|+... .||++.+++++..+.++ .++++++++|+++..... .+..+|.++|+++ ++++..+|+.||++++
T Consensus 192 ~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ 270 (365)
T cd03825 192 KIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-DLPFPVHYLGSLNDDESLALIYSAADVFVV 270 (365)
T ss_pred eEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-cCCCceEecCCcCCHHHHHHHHHhCCEEEe
Confidence 55656666654 89999999999999875 578999999987654432 4568899999998 8899999999999999
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 039338 388 PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAAS 466 (493)
Q Consensus 388 ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 466 (493)
||. .|++|++++|||++|+|||+++.++.. |++.++.+|++++. |++++++++.+++++ ++.+.++++++++.+++
T Consensus 271 ps~-~e~~g~~~~Eam~~g~PvI~~~~~~~~-e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 347 (365)
T cd03825 271 PSL-QENFPNTAIEALACGTPVVAFDVGGIP-DIVDHGVTGYLAKPGDPEDLAEGIEWLLAD-PDEREELGEAARELAEN 347 (365)
T ss_pred ccc-cccccHHHHHHHhcCCCEEEecCCCCh-hheeCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 996 599999999999999999999999998 88888889999999 999999999999998 88899999999999999
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 039338 467 MFTANKMALAYERLFLCI 484 (493)
Q Consensus 467 ~fs~~~~~~~~~~~~~~i 484 (493)
+|||+.++++|.++|+++
T Consensus 348 ~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 348 EFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred hcCHHHHHHHHHHHHhhC
Confidence 999999999999999864
No 26
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=5.7e-39 Score=325.65 Aligned_cols=386 Identities=20% Similarity=0.229 Sum_probs=261.5
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCC----------------CCCCCCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQEND----------------DGSNNKY 148 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 148 (493)
||++|+.++.|....||.+.++..|+++|++.||+|+|+++................ ......+
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 699999987666789999999999999999999999999987665222111100000 0001112
Q ss_pred CceEeecCCC-----C-----ccccc-------cchHHHHHHhc--CCCCcEEEeCccc---hhHHhhh--------ccC
Q 039338 149 PLLHFHEGEA-----D-----KWRYS-------KGWEQFDEENQ--REPFDVVHSESVA---LPHWLAR--------NVT 198 (493)
Q Consensus 149 ~~~~~~~~~~-----~-----~~~~~-------~~~~~~~~~~~--~~~~DiI~~~~~~---~~~~~~~--------~~p 198 (493)
..++++.... . ...+. .......+.+. ..+|||||+|.+. ++.++.. ..|
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 2222222111 0 00000 01112222232 4799999999752 2222222 345
Q ss_pred cEEEEeccchhhhhhhhh-hhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHH-------
Q 039338 199 NLAVSWHGIALESLQSGI-FQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDV------- 270 (493)
Q Consensus 199 ~~v~~~h~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~------- 270 (493)
+++++|+..+....... ..... .... . ...............++..+..+|.++++|+.+++.+.+.
T Consensus 161 -~v~tiH~~~~~g~~~~~~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~ 235 (476)
T cd03791 161 -TVFTIHNLAYQGVFPLEALEDLG-LPWE--E-LFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLD 235 (476)
T ss_pred -EEEEeCCCCCCCCCCHHHHHHcC-CCcc--c-hhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchH
Confidence 99999997653311110 00000 0000 0 0000000000001112355778999999999999887641
Q ss_pred --hCCCCCcEEEecCCccCCCccCCccc-----------------chhhhhhhCCC-CCCcEEEEEecccccccChHHHH
Q 039338 271 --YQIPSERVHVILNGINENEYGVDLSL-----------------GQSFRSRIGIP-KNASLVLGVAGRLVKDKGHPLLH 330 (493)
Q Consensus 271 --~~~~~~~v~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~~i~-~~~~~~i~~~Gr~~~~Kg~~~ll 330 (493)
+.....++.+|+||+|.+.|.+.... +..+++++|++ .++.++|+++||+.++||++.++
T Consensus 236 ~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li 315 (476)
T cd03791 236 GLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLL 315 (476)
T ss_pred HHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHH
Confidence 22345799999999999988765432 24578889986 33347889999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEeCCCc--HHHHhhh----cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHH
Q 039338 331 EAFSKLMVKYPDVYLIVAGSGPW--EQRYKDF----GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMM 404 (493)
Q Consensus 331 ~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~l----~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~ 404 (493)
+++..+.++ +++|+++|+|+. .+.++++ .+++.+.+..+.+++..+|+.||++++||.+ |++|++++|||+
T Consensus 316 ~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~-E~~gl~~lEAma 392 (476)
T cd03791 316 EALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRF-EPCGLTQMYAMR 392 (476)
T ss_pred HHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCC-CCCcHHHHHHhh
Confidence 999999875 489999998853 2333333 3688877777778889999999999999965 999999999999
Q ss_pred cCCcEEecCCCCCccceeeeCc------ceEEECC-CHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHhcCHHHHHH
Q 039338 405 SGKPVMASRFPSIKGTIVVDDE------FGFMFAP-NVESLHKTLEAAVSE--GPMRLAQRGEACRQYAASMFTANKMAL 475 (493)
Q Consensus 405 ~G~PvI~s~~~~~~~e~v~~~~------~G~~~~~-d~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~~fs~~~~~~ 475 (493)
||+|||+++.||++ |++.++. +|+++++ |+++++++|.++++. .++.+.++++++. +..|||+.+++
T Consensus 393 ~G~pvI~~~~gg~~-e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~ 468 (476)
T cd03791 393 YGTVPIVRATGGLA-DTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAM---AQDFSWDRSAK 468 (476)
T ss_pred CCCCCEECcCCCcc-ceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh---ccCCChHHHHH
Confidence 99999999999999 8888887 9999999 999999999998863 1566666666654 45699999999
Q ss_pred HHHHHHH
Q 039338 476 AYERLFL 482 (493)
Q Consensus 476 ~~~~~~~ 482 (493)
+|.++|+
T Consensus 469 ~~~~~y~ 475 (476)
T cd03791 469 EYLELYR 475 (476)
T ss_pred HHHHHHh
Confidence 9999996
No 27
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.4e-38 Score=308.18 Aligned_cols=357 Identities=23% Similarity=0.241 Sum_probs=267.4
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..||| ..||++.++..|+++|.++||+|++++..... ...... ... ........ .........
T Consensus 1 kIl~i~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~--~~~~~~-~~~-----~~~~~~~~-~~~~~~~~~ 69 (364)
T cd03814 1 RIAIVTDTFLP--QVNGVVRTLQRLVEHLRARGHEVLVIAPGPFR--ESEGPA-RVV-----PVPSVPLP-GYPEIRLAL 69 (364)
T ss_pred CeEEEecccCc--cccceehHHHHHHHHHHHCCCEEEEEeCCchh--hccCCC-Cce-----eecccccC-cccceEecc
Confidence 69999999976 56999999999999999999999999987654 111100 000 00000000 000011112
Q ss_pred cchHHHHHHhcCCCCcEEEeCccchhH------HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVALPH------WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~~~------~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
.....+.+.+++.+||+||++...... ....++| ++..+|+.+........ . .....
T Consensus 70 ~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~-~---------------~~~~~ 132 (364)
T cd03814 70 PPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIP-VVTSYHTDFPEYLRYYG-L---------------GPLSW 132 (364)
T ss_pred cchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCC-EEEEEecChHHHhhhcc-c---------------chHhH
Confidence 234455666668899999998643221 1223456 88899986442211100 0 01111
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
..... ...+++++|.++++|+...+.+.+ . ...++.+++||+|.+.+.+.... ...+++++ + +++++++++|
T Consensus 133 ~~~~~--~~~~~~~~d~i~~~s~~~~~~~~~-~--~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-~-~~~~~i~~~G 204 (364)
T cd03814 133 LAWAY--LRWFHNRADRVLVPSPSLADELRA-R--GFRRVRLWPRGVDTELFHPRRRD-EALRARLG-P-PDRPVLLYVG 204 (364)
T ss_pred hhHHH--HHHHHHhCCEEEeCCHHHHHHHhc-c--CCCceeecCCCccccccCccccc-HHHHHHhC-C-CCCeEEEEEe
Confidence 11111 225678899999999999996654 2 34689999999999877654432 23445555 2 3347889999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChH
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLT 398 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~ 398 (493)
++.+.||++.+++++..+.++ ++++++++|+|+..+.++...++|.+.|+++.+++.++|+.||++++|+. .|++|++
T Consensus 205 ~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~-~e~~~~~ 282 (364)
T cd03814 205 RLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSR-TETFGLV 282 (364)
T ss_pred ccccccCHHHHHHHHHHhhhc-CCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcc-cccCCcH
Confidence 999999999999999999887 89999999999888777766689999999999999999999999999996 4999999
Q ss_pred HHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 399 LMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 399 ~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
++|||+||+|||+++.++.. +++.++++|+++++ |.++++++|.+++.+ ++.++++++++++.+ +.|+|+.+++++
T Consensus 283 ~lEa~a~g~PvI~~~~~~~~-~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 359 (364)
T cd03814 283 VLEAMASGLPVVAPDAGGPA-DIVTDGENGLLVEPGDAEAFAAALAALLAD-PELRRRMAARARAEA-ERRSWEAFLDNL 359 (364)
T ss_pred HHHHHHcCCCEEEcCCCCch-hhhcCCcceEEcCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH-hhcCHHHHHHHH
Confidence 99999999999999999988 88888899999999 999999999999999 899999999999999 559999999999
Q ss_pred HHHHH
Q 039338 478 ERLFL 482 (493)
Q Consensus 478 ~~~~~ 482 (493)
.++|+
T Consensus 360 ~~~~~ 364 (364)
T cd03814 360 LEAYR 364 (364)
T ss_pred HHhhC
Confidence 99874
No 28
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=2.6e-38 Score=312.96 Aligned_cols=367 Identities=19% Similarity=0.234 Sum_probs=258.3
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeec----------
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHE---------- 155 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 155 (493)
||++++.+|.++..|| ...+++++++|++. |+|++++......+......... . ...+....
T Consensus 1 iL~~~~~~P~P~~~G~-~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~---~---~~~~~~~~~~~~~~~~~~ 72 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGD-KIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRP---L---CEEVCVVPLDPRVARLRS 72 (397)
T ss_pred CeeecCCCCCCCCCCC-cEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHH---H---hheeEEeecCcHHHHHHH
Confidence 6899998887655555 77899999999886 99999998654311111110000 0 01111110
Q ss_pred ------CCCCc---cccccchHHHHHHhcCCCCcEEEeCccchhHHhh---hccCcEEEEeccchhhhhhhhhhhhhhcC
Q 039338 156 ------GEADK---WRYSKGWEQFDEENQREPFDVVHSESVALPHWLA---RNVTNLAVSWHGIALESLQSGIFQDLTRK 223 (493)
Q Consensus 156 ------~~~~~---~~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~ 223 (493)
..+.. +........+.+.+++.++|+||+++..+..++. .++| .+++.|+.....+. .....
T Consensus 73 ~~~l~~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~p-~i~~~~d~~~~~~~-----~~~~~ 146 (397)
T TIGR03087 73 LLGLLTGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTPHVRGVP-RIVDFVDVDSDKWL-----QYART 146 (397)
T ss_pred HhhhcCCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccccccCCC-eEeehhhHHHHHHH-----HHHhc
Confidence 01111 1112234556666778899999999765544443 3457 88899986432221 11110
Q ss_pred CCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhh
Q 039338 224 PLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSR 303 (493)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~ 303 (493)
...+.. .. ......... ..|+..++++|.++++|+..++.+.+.++....++.+||||+|.+.|.+......
T Consensus 147 ~~~~~~-~~-~~~~~~~~~-~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~----- 218 (397)
T TIGR03087 147 KRWPLR-WI-YRREGRLLL-AYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN----- 218 (397)
T ss_pred cCcchh-HH-HHHHHHHHH-HHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC-----
Confidence 010100 00 011011111 1355788999999999999999998765555678999999999988865432111
Q ss_pred hCCCCCCcEEEEEecccccccChHHHH----HHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc--CcEEEecCCCHHHHHH
Q 039338 304 IGIPKNASLVLGVAGRLVKDKGHPLLH----EAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG--HQVLVMGSMSPAELRA 377 (493)
Q Consensus 304 ~~i~~~~~~~i~~~Gr~~~~Kg~~~ll----~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~--~~V~~~g~~~~~~~~~ 377 (493)
.++.++ .+++|+|++.+.||++.++ +++..+.++.|+++|+|+|+|+.. .++++. ++|.|+|+++ ++..
T Consensus 219 -~~~~~~-~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~-~~~~l~~~~~V~~~G~v~--~~~~ 293 (397)
T TIGR03087 219 -PYPPGK-RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSP-AVRALAALPGVTVTGSVA--DVRP 293 (397)
T ss_pred -CCCCCC-cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChH-HHHHhccCCCeEEeeecC--CHHH
Confidence 122233 5788999999999999887 566677777799999999998764 345543 7899999996 7899
Q ss_pred HHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 378 FYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 378 ~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
+|+.||++|+||...||+|++++|||+||+|||+|+.++ . .+...+++|++++.|+++++++|.++++| ++.+++|+
T Consensus 294 ~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~-~-~i~~~~~~g~lv~~~~~~la~ai~~ll~~-~~~~~~~~ 370 (397)
T TIGR03087 294 YLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAA-E-GIDALPGAELLVAADPADFAAAILALLAN-PAEREELG 370 (397)
T ss_pred HHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccc-c-cccccCCcceEeCCCHHHHHHHHHHHHcC-HHHHHHHH
Confidence 999999999999656999999999999999999999753 2 33445567988877999999999999998 89999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 458 EACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 458 ~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
++++++++++|||+.++++++++|.
T Consensus 371 ~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 371 QAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999999999885
No 29
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=5.1e-38 Score=308.58 Aligned_cols=344 Identities=24% Similarity=0.309 Sum_probs=255.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC------
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA------ 158 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 158 (493)
||+++++.||+ +.++++.++++.|. ||+|++++..... ..+.... ...+.......
T Consensus 1 ~~~~~~~~~~~-----~~e~~~~~~~~~l~--~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~ 62 (367)
T cd05844 1 RVLIFRPLLLA-----PSETFVRNQAEALR--RFRPVYVGGRRLG-PAPLGAL----------AVRLADLAGGKAGLRLG 62 (367)
T ss_pred CEEEEeCCCCC-----CchHHHHHHHHhcc--cCCcEEEEeeccC-CCCCccc----------ceeeeecccchhHHHHH
Confidence 58999998865 27889999999994 7888888876544 1111111 01111110000
Q ss_pred CccccccchHHHHHHhcCCCCcEEEeCccc--hhH---HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhH
Q 039338 159 DKWRYSKGWEQFDEENQREPFDVVHSESVA--LPH---WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFN 233 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
...........+...+++.+||+||+|... +.. ....++| +++++|+........... .. .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p-~i~~~h~~~~~~~~~~~~---------~~----~ 128 (367)
T cd05844 63 ALRLLTGSAPQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVP-LVVTFHGFDATTSLALLL---------RS----R 128 (367)
T ss_pred HHHhccccccHHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCC-EEEEEeCccccccchhhc---------cc----c
Confidence 001112222344445667899999998642 111 1223567 999999753221100000 00 0
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEE
Q 039338 234 KSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLV 313 (493)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~ 313 (493)
...... .+...++.+|.++++|+.+++.+.+ +|++..++.+++||+|.+.+.+... ..++..
T Consensus 129 ~~~~~~-----~~~~~~~~~d~ii~~s~~~~~~~~~-~~~~~~~i~vi~~g~d~~~~~~~~~------------~~~~~~ 190 (367)
T cd05844 129 WALYAR-----RRRRLARRAALFIAVSQFIRDRLLA-LGFPPEKVHVHPIGVDTAKFTPATP------------ARRPPR 190 (367)
T ss_pred hhHHHH-----HHHHHHHhcCEEEECCHHHHHHHHH-cCCCHHHeEEecCCCCHHhcCCCCC------------CCCCcE
Confidence 011111 1235678999999999999999988 4778889999999999877654321 122367
Q ss_pred EEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 314 LGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
++++|++.+.||++.+++|+..+.+++++++|+++|+|+..+.++++ .++|.|+|+++++++.++|+.||++++
T Consensus 191 i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ 270 (367)
T cd05844 191 ILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQ 270 (367)
T ss_pred EEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEE
Confidence 88999999999999999999999988899999999998766554432 378999999999999999999999999
Q ss_pred CCCC-----CCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 039338 388 PTLR-----PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACR 461 (493)
Q Consensus 388 ps~~-----~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 461 (493)
||.. .||+|++++|||+||+|||+++.++.. |++.++++|+++++ |+++++++|.+++++ ++.+.+++.+++
T Consensus 271 ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~a~ 348 (367)
T cd05844 271 PSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIP-EAVEDGETGLLVPEGDVAALAAALGRLLAD-PDLRARMGAAGR 348 (367)
T ss_pred CcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCch-hheecCCeeEEECCCCHHHHHHHHHHHHcC-HHHHHHHHHHHH
Confidence 9962 489999999999999999999999988 88899999999998 999999999999998 899999999999
Q ss_pred HHHHHhcCHHHHHHHHHHH
Q 039338 462 QYAASMFTANKMALAYERL 480 (493)
Q Consensus 462 ~~~~~~fs~~~~~~~~~~~ 480 (493)
+++++.|||+.+++++.++
T Consensus 349 ~~~~~~~s~~~~~~~l~~i 367 (367)
T cd05844 349 RRVEERFDLRRQTAKLEAL 367 (367)
T ss_pred HHHHHHCCHHHHHHHHhcC
Confidence 9999999999999998753
No 30
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.1e-38 Score=309.16 Aligned_cols=350 Identities=17% Similarity=0.151 Sum_probs=248.9
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCc-ccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADK-WRY 163 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 163 (493)
||++++..+ ..||+++++.+++++|.+.||+|++++..... .. ....+..... .....+.. .... ..+
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~--~~-~~~~~~~~~~-~~g~~~~~---~~~~~~~~ 69 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDP--EF-FNVTKKFHNA-LQGADIEL---SEEEKEIY 69 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCCh--hH-HHHHHHhhHh-hcCCCCCC---CHHHHHHH
Confidence 699999865 66999999999999999999999999875433 10 0000000000 00111100 0000 000
Q ss_pred ccchHHHHH-HhcCCCCcEEEeCccchhHH---hhh-ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 164 SKGWEQFDE-ENQREPFDVVHSESVALPHW---LAR-NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 164 ~~~~~~~~~-~~~~~~~DiI~~~~~~~~~~---~~~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
......... .....+||+||+|+.....+ ... ..| ++.+.|...... . .....
T Consensus 70 ~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~-~i~~~H~~~~~~----------------~-----~~~~~ 127 (372)
T cd03792 70 LEWNEENAERPLLDLDADVVVIHDPQPLALPLFKKKRGRP-WIWRCHIDLSSP----------------N-----RRVWD 127 (372)
T ss_pred HHHHHHHhccccccCCCCEEEECCCCchhHHHhhhcCCCe-EEEEeeeecCCC----------------c-----HHHHH
Confidence 000111111 23366899999997642222 222 456 888889643110 0 01111
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCcc---CCcccchhhhhhhCCCCCCcEEEE
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYG---VDLSLGQSFRSRIGIPKNASLVLG 315 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~---~~~~~~~~~r~~~~i~~~~~~~i~ 315 (493)
.+ .++++++|.+++.+... .. .+++..++ ++|||+|..... ..+......++++++++++ .+|+
T Consensus 128 ~~------~~~~~~~d~~i~~~~~~---~~--~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 194 (372)
T cd03792 128 FL------QPYIEDYDAAVFHLPEY---VP--PQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPER-PYIT 194 (372)
T ss_pred HH------HHHHHhCCEEeecHHHh---cC--CCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCC-cEEE
Confidence 11 24567899988888332 22 24455555 999999975321 1222334677889988776 6788
Q ss_pred EecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcH--------HHHh-h--hcCcEEEecCC--CHHHHHHHHHHc
Q 039338 316 VAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWE--------QRYK-D--FGHQVLVMGSM--SPAELRAFYNAI 382 (493)
Q Consensus 316 ~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~--------~~~~-~--l~~~V~~~g~~--~~~~~~~~~~~a 382 (493)
++||+.+.||++.+++++..+.++.++++|+++|+|+.. +.+. + +.++|.|+|.. +++++..+|++|
T Consensus 195 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~a 274 (372)
T cd03792 195 QVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRAS 274 (372)
T ss_pred EEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhC
Confidence 999999999999999999999888789999999998642 1211 1 23789999986 889999999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 039338 383 DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQ 462 (493)
Q Consensus 383 dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 462 (493)
|++++||. .||||++++|||+||+|||+++.++.. +++.++.+|++++ ++++++++|.+++++ ++.+++|++++++
T Consensus 275 d~~v~~s~-~Eg~g~~~lEA~a~G~Pvv~s~~~~~~-~~i~~~~~g~~~~-~~~~~a~~i~~ll~~-~~~~~~~~~~a~~ 350 (372)
T cd03792 275 TVVLQKSI-REGFGLTVTEALWKGKPVIAGPVGGIP-LQIEDGETGFLVD-TVEEAAVRILYLLRD-PELRRKMGANARE 350 (372)
T ss_pred eEEEeCCC-ccCCCHHHHHHHHcCCCEEEcCCCCch-hhcccCCceEEeC-CcHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 99999996 599999999999999999999999988 8889999999987 677889999999998 8999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 039338 463 YAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 463 ~~~~~fs~~~~~~~~~~~~~~i 484 (493)
.+.+.|+|+.+++++.++|+++
T Consensus 351 ~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 351 HVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred HHHHHcCHHHHHHHHHHHHHhC
Confidence 9988899999999999999863
No 31
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=4.8e-38 Score=304.76 Aligned_cols=324 Identities=24% Similarity=0.305 Sum_probs=243.9
Q ss_pred eEEEEEeccC-C-CCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKW-P-ISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~-p-~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
|||+++++.+ | +++..||+++++..|+++|.++||+|++++............. ..............
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 70 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPV----------VPEPLRLDAPGRDR 70 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeec----------cCCCcccccchhhH
Confidence 8999999976 2 1358999999999999999999999999998765411000000 00000000011112
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCccchhH--HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSESVALPH--WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~--~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
........+.+.+++.+||+||+|+..... ....+.| ++.+.|+....... .
T Consensus 71 ~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~~~---------------------~---- 124 (335)
T cd03802 71 AEAEALALAERALAAGDFDIVHNHSLHLPLPFARPLPVP-VVTTLHGPPDPELL---------------------K---- 124 (335)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEecCcccchhhhcccCCC-EEEEecCCCCcccc---------------------h----
Confidence 223344566677778899999999864333 2333456 99999986432110 0
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
........+.++++|+...+.+... .++.+||||+|.+.|.+.. .++ ..++++||
T Consensus 125 ------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~vi~ngvd~~~~~~~~-------------~~~-~~i~~~Gr 179 (335)
T cd03802 125 ------LYYAARPDVPFVSISDAQRRPWPPL-----PWVATVHNGIDLDDYPFRG-------------PKG-DYLLFLGR 179 (335)
T ss_pred ------HHHhhCcCCeEEEecHHHHhhcccc-----cccEEecCCcChhhCCCCC-------------CCC-CEEEEEEe
Confidence 0123457788999999998876542 6899999999998876522 122 46789999
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHh----h---hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYK----D---FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~----~---l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~ 392 (493)
+.+.||++.+++++++. +++++++|.|+..+... + +.++|.|+|+++++++.++|+.+|++++||...
T Consensus 180 ~~~~Kg~~~li~~~~~~-----~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~ 254 (335)
T cd03802 180 ISPEKGPHLAIRAARRA-----GIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWE 254 (335)
T ss_pred eccccCHHHHHHHHHhc-----CCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccc
Confidence 99999999999997653 78999999986544322 2 258999999999999999999999999999756
Q ss_pred CCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHH
Q 039338 393 QGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANK 472 (493)
Q Consensus 393 eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 472 (493)
|++|++++|||+||+|||+++.|+.+ |++.++.+|+++++ +++++++|.++.+. . .+++++.+.++|||+.
T Consensus 255 E~~~~~~lEAma~G~PvI~~~~~~~~-e~i~~~~~g~l~~~-~~~l~~~l~~l~~~-~------~~~~~~~~~~~~s~~~ 325 (335)
T cd03802 255 EPFGLVMIEAMACGTPVIAFRRGAVP-EVVEDGVTGFLVDS-VEELAAAVARADRL-D------RAACRRRAERRFSAAR 325 (335)
T ss_pred CCcchHHHHHHhcCCCEEEeCCCCch-hheeCCCcEEEeCC-HHHHHHHHHHHhcc-H------HHHHHHHHHHhCCHHH
Confidence 99999999999999999999999998 89999989999995 99999999998654 2 2467788889999999
Q ss_pred HHHHHHHHHH
Q 039338 473 MALAYERLFL 482 (493)
Q Consensus 473 ~~~~~~~~~~ 482 (493)
++++|.++|+
T Consensus 326 ~~~~~~~~y~ 335 (335)
T cd03802 326 MVDDYLALYR 335 (335)
T ss_pred HHHHHHHHhC
Confidence 9999999984
No 32
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.8e-37 Score=303.36 Aligned_cols=342 Identities=24% Similarity=0.316 Sum_probs=250.2
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..||| ..||+++++..++++|.++||+|++++..... ...... ..... +.............
T Consensus 1 kil~i~~~~~p--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~-------~~~~~-~~~~~~~~~~~~~~ 68 (357)
T cd03795 1 RVLHVGKFYPP--DRGGIEQVIRDLAEGLAARGIEVAVLCASPEP--KGRDEE-------RNGHR-VIRAPSLLNVASTP 68 (357)
T ss_pred CeeEecCCCCC--CCCcHHHHHHHHHHHHHhCCCceEEEecCCCC--cchhhh-------ccCce-EEEeeccccccccc
Confidence 69999999876 58999999999999999999999999987654 111111 01111 11111110101111
Q ss_pred cchHHHHHH-hcCCCCcEEEeCccchhH----Hhh-hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 165 KGWEQFDEE-NQREPFDVVHSESVALPH----WLA-RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 165 ~~~~~~~~~-~~~~~~DiI~~~~~~~~~----~~~-~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
......... ....++|+||++...... ++. .+.| .+.++|+...... .......
T Consensus 69 ~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~-------------------~~~~~~~ 128 (357)
T cd03795 69 FSPSFFKQLKKLAKKADVIHLHFPNPLADLALLLLPRKKP-VVVHWHSDIVKQK-------------------LLLKLYR 128 (357)
T ss_pred ccHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHhccCce-EEEEEcChhhccc-------------------hhhhhhh
Confidence 111111111 447799999998753211 111 2345 8888886321100 0011111
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
.+ +.++++++|.++++|+...+.+...++. ..++.++|||+|...+.+...... .....+.+ +++++++|
T Consensus 129 ~~-----~~~~~~~~d~vi~~s~~~~~~~~~~~~~-~~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~-~~~i~~~G 198 (357)
T cd03795 129 PL-----QRRFLRRADAIVATSPNYAETSPVLRRF-RDKVRVIPLGLDPARYPRPDALEE---AIWRRAAG-RPFFLFVG 198 (357)
T ss_pred HH-----HHHHHHhcCEEEeCcHHHHHHHHHhcCC-ccceEEecCCCChhhcCCcchhhh---HhhcCCCC-CcEEEEec
Confidence 11 2256789999999999999988775544 378999999999987765432111 11222333 47889999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCC-C
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTL-R 391 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~-~ 391 (493)
++.+.||++.++++++++. +++++++|+|+....++++ .++|.|+|+++++++.++|+.||++++||. .
T Consensus 199 ~~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~ 274 (357)
T cd03795 199 RLVYYKGLDVLLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVER 274 (357)
T ss_pred ccccccCHHHHHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccc
Confidence 9999999999999999985 7999999999876655542 279999999999999999999999999985 3
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCccceeee-CcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD-DEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~-~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
.|++|++++|||++|+|||+++.++.. +.+.+ +++|+++++ |+++++++|.+++++ ++.+++|++++++.+++.||
T Consensus 275 ~e~~g~~~~Ea~~~g~Pvi~~~~~~~~-~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s 352 (357)
T cd03795 275 SEAFGIVLLEAMAFGKPVISTEIGTGG-SYVNLHGVTGLVVPPGDPAALAEAIRRLLED-PELRERLGEAARERAEEEFT 352 (357)
T ss_pred ccccchHHHHHHHcCCCEEecCCCCch-hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHhcc
Confidence 599999999999999999999999988 66665 899999998 999999999999999 89999999999999999999
Q ss_pred HHHHH
Q 039338 470 ANKMA 474 (493)
Q Consensus 470 ~~~~~ 474 (493)
|+.++
T Consensus 353 ~~~~~ 357 (357)
T cd03795 353 ADRMV 357 (357)
T ss_pred hHhhC
Confidence 99864
No 33
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=6.4e-37 Score=311.91 Aligned_cols=382 Identities=16% Similarity=0.156 Sum_probs=253.3
Q ss_pred CCCceEEEEEeccC----CC---CCCCCchHHHHHHHHHHH--------HhCCC----EEEEEecCCCCCCCCCCccccC
Q 039338 80 SKFTLKIAVFSRKW----PI---STTPGGMERHAHTLHVAL--------ARRGH----RVHIFTSPVDNINSPSISHQEN 140 (493)
Q Consensus 80 ~~~~mkIl~v~~~~----p~---~~~~gG~~~~~~~l~~~L--------~~~G~----~V~v~~~~~~~~~~~~~~~~~~ 140 (493)
.+..|||++++.+. ++ .+..||...++..++++| +++|| +|+|+|..... .........
T Consensus 252 ~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~--~~~~~~~~~ 329 (784)
T TIGR02470 252 IPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPD--AEGTTCNQR 329 (784)
T ss_pred CCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC--ccccccccc
Confidence 34569999999975 21 124699999999999985 68899 77899987654 111100000
Q ss_pred CCCCCCCCCceEeec---CCCCc------cccccchH-------HHHH-Hh--cCCCCcEEEeCcc--chhHH-hh--hc
Q 039338 141 DDGSNNKYPLLHFHE---GEADK------WRYSKGWE-------QFDE-EN--QREPFDVVHSESV--ALPHW-LA--RN 196 (493)
Q Consensus 141 ~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~-------~~~~-~~--~~~~~DiI~~~~~--~~~~~-~~--~~ 196 (493)
.. ...+...+++.. ..... ......|. .+.+ +. ...+||+||+|.+ ++.+. ++ .+
T Consensus 330 ~e-~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lg 408 (784)
T TIGR02470 330 LE-KVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLG 408 (784)
T ss_pred cc-cccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcC
Confidence 00 011122222222 11110 01111111 1111 11 1357999999964 22222 22 25
Q ss_pred cCcEEEEeccchhhhh-hhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHH----HHHH--
Q 039338 197 VTNLAVSWHGIALESL-QSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGE----MLRD-- 269 (493)
Q Consensus 197 ~p~~v~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~----~~~~-- 269 (493)
+| .+.+.|....... +++.. .. .. ...+....++..+...+..||.||+.|..... .+.+
T Consensus 409 VP-~v~t~HsL~~~K~~~~g~~---------~~--~~-e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~ 475 (784)
T TIGR02470 409 VT-QCTIAHALEKTKYPDSDIY---------WQ--EF-EDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYE 475 (784)
T ss_pred CC-EEEECCcchhhcccccccc---------cc--cc-hhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhh
Confidence 67 8899997632210 00000 00 00 01111122333355678899999999975422 2211
Q ss_pred ---------Hh----CC--CCCcEEEecCCccCCCccCCcccch-----------------hhhhhhCC--CCCCcEEEE
Q 039338 270 ---------VY----QI--PSERVHVILNGINENEYGVDLSLGQ-----------------SFRSRIGI--PKNASLVLG 315 (493)
Q Consensus 270 ---------~~----~~--~~~~v~vi~ngvd~~~~~~~~~~~~-----------------~~r~~~~i--~~~~~~~i~ 315 (493)
.| |+ +.+|+.+||+|+|...|.+...... ..++.+|+ +.++ .+|+
T Consensus 476 s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~k-piIl 554 (784)
T TIGR02470 476 SHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNK-PIIF 554 (784)
T ss_pred hcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCC-cEEE
Confidence 11 22 4579999999999998876443211 12356665 3344 6788
Q ss_pred EecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCc------HH---HHh-------hh--cCcEEEecCC-CHHHHH
Q 039338 316 VAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW------EQ---RYK-------DF--GHQVLVMGSM-SPAELR 376 (493)
Q Consensus 316 ~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~------~~---~~~-------~l--~~~V~~~g~~-~~~~~~ 376 (493)
++||+.+.||++.+++|+.++....++++|+|+|++.. .+ ..+ ++ .++|.|+|.. +..+..
T Consensus 555 ~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~ 634 (784)
T TIGR02470 555 SMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNG 634 (784)
T ss_pred EEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHH
Confidence 99999999999999999998765556799999997642 11 111 22 2789999985 555666
Q ss_pred HHHH----HcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHH----H
Q 039338 377 AFYN----AIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAV----S 447 (493)
Q Consensus 377 ~~~~----~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll----~ 447 (493)
++|+ .+|++|+||. .|+||++++|||+||+|||+|+.||.. |+|.++.+|+++++ |+++++++|.+++ .
T Consensus 635 elyr~iAd~adVfV~PS~-~EpFGLvvLEAMAcGlPVVAT~~GG~~-EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~ 712 (784)
T TIGR02470 635 ELYRYIADTKGIFVQPAL-YEAFGLTVLEAMTCGLPTFATRFGGPL-EIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDE 712 (784)
T ss_pred HHHHHhhccCcEEEECCc-ccCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 6664 3579999996 599999999999999999999999998 99999999999999 9999999999886 4
Q ss_pred cCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 448 EGPMRLAQRGEACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
| ++.++++++++++++.++|||+.+++++.++.
T Consensus 713 d-p~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 713 D-PSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred C-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6 89999999999999999999999999998876
No 34
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.4e-37 Score=302.79 Aligned_cols=290 Identities=14% Similarity=0.182 Sum_probs=219.5
Q ss_pred chHHHHHHhcCCCCcEEEeCccc--hhHH---hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHH
Q 039338 166 GWEQFDEENQREPFDVVHSESVA--LPHW---LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVM 240 (493)
Q Consensus 166 ~~~~~~~~~~~~~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
.+..+...+++.+|||||+|... +... +..+.|.++.+.|++.... . ......-
T Consensus 268 ~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~~-----~----------------~r~~~~e 326 (578)
T PRK15490 268 GIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPVV-----R----------------KRLFKPE 326 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCcc-----h----------------hhHHHHH
Confidence 34566777789999999999653 2222 2235563455667621110 0 0000000
Q ss_pred HHHHHH-HHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhh--hCCCCCCcEEEEEe
Q 039338 241 LKVLNE-IRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSR--IGIPKNASLVLGVA 317 (493)
Q Consensus 241 ~~~~~~-~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~--~~i~~~~~~~i~~~ 317 (493)
.....+ ......+| +++.|....+.+.+.++++.+++.+||||+|...|.+........+.. .+++++. ++++++
T Consensus 327 ~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~-~vIg~V 404 (578)
T PRK15490 327 YEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDAD-TTIGGV 404 (578)
T ss_pred HHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCC-cEEEEE
Confidence 001111 01234445 778899999999888899999999999999998877654322223332 3444444 678899
Q ss_pred cccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCC
Q 039338 318 GRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLR 391 (493)
Q Consensus 318 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~ 391 (493)
||+.+.||+..+++++.++.++.++++|+|+|+|+..+.++++ .++|.|+|+. +++..+|+.+|++|+||.+
T Consensus 405 gRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~ 482 (578)
T PRK15490 405 FRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRY 482 (578)
T ss_pred EEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccc
Confidence 9999999999999999999888899999999999887665542 3889999995 7899999999999999964
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHH---HHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTL---EAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i---~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
||||++++|||++|+|||+++.||.+ |++.++.+|+++++ |++++++++ .++.++ .+....++++++++++++
T Consensus 483 -EGfp~vlLEAMA~GlPVVATdvGG~~-EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~l-l~~~~~mg~~ARe~V~e~ 559 (578)
T PRK15490 483 -EGLPNVLIEAQMVGVPVISTPAGGSA-ECFIEGVSGFILDDAQTVNLDQACRYAEKLVNL-WRSRTGICQQTQSFLQER 559 (578)
T ss_pred -cCccHHHHHHHHhCCCEEEeCCCCcH-HHcccCCcEEEECCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998 99999999999999 888888876 444544 455667999999999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 039338 468 FTANKMALAYERLFLC 483 (493)
Q Consensus 468 fs~~~~~~~~~~~~~~ 483 (493)
|||+.++++|.++|..
T Consensus 560 FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 560 FTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999975
No 35
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=1.3e-37 Score=304.44 Aligned_cols=351 Identities=24% Similarity=0.324 Sum_probs=270.2
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..+ ..||+++.+..|+++|.+.||+|.+++..... ...... ......+........ ....
T Consensus 1 ~i~~i~~~~----~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~--~~~~~~-------~~~~i~v~~~~~~~~-~~~~ 66 (365)
T cd03807 1 KVLHVITGL----DVGGAERMLVRLLKGLDRDRFEHVVISLTDRG--ELGEEL-------EEAGVPVYCLGKRPG-RPDP 66 (365)
T ss_pred CeEEEEeec----cCccHHHHHHHHHHHhhhccceEEEEecCcch--hhhHHH-------HhcCCeEEEEecccc-cccH
Confidence 689999977 44999999999999999999999999875443 111111 111122222222211 2233
Q ss_pred cchHHHHHHhcCCCCcEEEeCccc--hhH----HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVA--LPH----WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~--~~~----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
..+..+.+.+++.+||+||++... ... ......+ ++++.|+...... ........
T Consensus 67 ~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~------------------~~~~~~~~ 127 (365)
T cd03807 67 GALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPP-VIWGIRHSDLDLG------------------KKSTRLVA 127 (365)
T ss_pred HHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhcCCCc-EEEEecCCccccc------------------chhHhHHH
Confidence 344566667778899999998542 111 1112334 8999998643211 00011122
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
.+ +..+.+.+|.++++|+...+.+.+ ++++.+++.+++||+|...+.+........+++++++++. ++|+++|
T Consensus 128 ~~-----~~~~~~~~~~~i~~s~~~~~~~~~-~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G 200 (365)
T cd03807 128 RL-----RRLLSSFIPLIVANSAAAAEYHQA-IGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDT-FLIGIVA 200 (365)
T ss_pred HH-----HHHhccccCeEEeccHHHHHHHHH-cCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCC-eEEEEec
Confidence 22 224567789999999999999987 4778889999999999988776666566677888888766 7889999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh-------hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCC
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD-------FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLR 391 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~-------l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~ 391 (493)
++.+.||++.+++++..+.+++++++++++|.++.....++ +.++|.+.|.. +++.++|+.||++++||..
T Consensus 201 ~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~ 278 (365)
T cd03807 201 RLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLS 278 (365)
T ss_pred ccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCcc
Confidence 99999999999999999988888999999998875543322 22689999976 6899999999999999975
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCH
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTA 470 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 470 (493)
||+|++++|||+||+|||+++.++.. +++.+ +|+++++ |+++++++|.+++++ ++.+.++++++++.++++|||
T Consensus 279 -e~~~~~~~Ea~a~g~PvI~~~~~~~~-e~~~~--~g~~~~~~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~ 353 (365)
T cd03807 279 -EGFPNVLLEAMACGLPVVATDVGDNA-ELVGD--TGFLVPPGDPEALAEAIEALLAD-PALRQALGEAARERIEENFSI 353 (365)
T ss_pred -ccCCcHHHHHHhcCCCEEEcCCCChH-HHhhc--CCEEeCCCCHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999988 77766 8999998 999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 039338 471 NKMALAYERLFL 482 (493)
Q Consensus 471 ~~~~~~~~~~~~ 482 (493)
+++++++.++|+
T Consensus 354 ~~~~~~~~~~y~ 365 (365)
T cd03807 354 EAMVEAYEELYR 365 (365)
T ss_pred HHHHHHHHHHhC
Confidence 999999999984
No 36
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=3.3e-37 Score=301.65 Aligned_cols=362 Identities=30% Similarity=0.435 Sum_probs=274.0
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..+|+ ..||...++..++++|.+.||+|++++..... .......... ..................
T Consensus 1 kI~ii~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 71 (374)
T cd03801 1 KILLVTPEYPP--SVGGAERHVLELARALAARGHEVTVLTPGDGG--LPDEEEVGGI-----VVVRPPPLLRVRRLLLLL 71 (374)
T ss_pred CeeEEecccCC--ccCcHhHHHHHHHHHHHhcCceEEEEecCCCC--CCceeeecCc-----ceecCCcccccchhHHHH
Confidence 69999998865 37999999999999999999999999987665 2111110000 000000000011111222
Q ss_pred cchHHHHHHhcCCCCcEEEeCccchhHH-----hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVALPHW-----LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~~~~-----~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
.....+.+.+++.++|+||+++...... ...+.| ++.++|+......... .....
T Consensus 72 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~------------------~~~~~- 131 (374)
T cd03801 72 LLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIP-LVLTVHGLEFGRPGNE------------------LGLLL- 131 (374)
T ss_pred HHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCc-EEEEeccchhhccccc------------------hhHHH-
Confidence 3334555566678999999997643332 223446 9999999765332111 00001
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
......+...++.+|.++++|+.+.+.+.+.++.+..++.++|||+|...+.+.. ...+.......+. ++++++|+
T Consensus 132 ~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~i~~~g~ 207 (374)
T cd03801 132 KLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP---RAARRRLGIPEDE-PVILFVGR 207 (374)
T ss_pred HHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc---hHHHhhcCCcCCC-eEEEEecc
Confidence 1111123366789999999999999999997766557999999999988775432 2222333333343 78999999
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh------hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD------FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~------l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+...||++.+++++..+.+++++++++++|.++..+.+++ ..++|.+.|+++++++.++|+.||++++|+.. |
T Consensus 208 ~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~-~ 286 (374)
T cd03801 208 LVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLY-E 286 (374)
T ss_pred hhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchh-c
Confidence 9999999999999999998888999999998877666654 23899999999999999999999999999965 9
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHH
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANK 472 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~ 472 (493)
++|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++.+ ++.+.++++++++.+.+.|+|++
T Consensus 287 ~~~~~~~Ea~~~g~pvI~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 364 (374)
T cd03801 287 GFGLVLLEAMAAGLPVVASDVGGIP-EVVEDGETGLLVPPGDPEALAEAILRLLDD-PELRRRLGEAARERVAERFSWDR 364 (374)
T ss_pred cccchHHHHHHcCCcEEEeCCCChh-HHhcCCcceEEeCCCCHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999988 88888999999999 899999999999999 89999999999989999999999
Q ss_pred HHHHHHHHHH
Q 039338 473 MALAYERLFL 482 (493)
Q Consensus 473 ~~~~~~~~~~ 482 (493)
+++++.++|+
T Consensus 365 ~~~~~~~~~~ 374 (374)
T cd03801 365 VAARTEEVYY 374 (374)
T ss_pred HHHHHHHhhC
Confidence 9999999873
No 37
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=8.9e-37 Score=299.70 Aligned_cols=359 Identities=23% Similarity=0.359 Sum_probs=265.0
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEe-ecCCCCcccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHF-HEGEADKWRY 163 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 163 (493)
||++++..||| ..||.+..+..++++|.++||+|++++..... ........ ....... ..........
T Consensus 1 kil~~~~~~~p--~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 69 (374)
T cd03817 1 KIGIFTDTYLP--QVNGVATSIRRLAEELEKRGHEVYVVAPSYPG--APEEEEVV-------VVRPFRVPTFKYPDFRLP 69 (374)
T ss_pred CeeEeehhccC--CCCCeehHHHHHHHHHHHcCCeEEEEeCCCCC--CCcccccc-------cccccccccchhhhhhcc
Confidence 69999999876 77999999999999999999999999987655 11111100 0000000 0001111112
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccchhHH------hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHH
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVALPHW------LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQ 237 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (493)
......+...+++.+||+||+++...... ...++| ++.++|+.+....+..... ....
T Consensus 70 ~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~---------------~~~~ 133 (374)
T cd03817 70 LPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIP-VVATYHTMYEDYTHYVPLG---------------RLLA 133 (374)
T ss_pred ccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCC-EEEEecCCHHHHHHHHhcc---------------cchh
Confidence 22334444556688999999987532211 123456 8999998654222111000 0001
Q ss_pred HHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEe
Q 039338 238 GVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVA 317 (493)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~ 317 (493)
........+...++.+|.++++|+..++.+.+ ++. ..++.+++||+|...+.+... ...++++++..++ ++|+++
T Consensus 134 ~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~-~~~-~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~i~~~ 208 (374)
T cd03817 134 RAVVRRKLSRRFYNRCDAVIAPSEKIADLLRE-YGV-KRPIEVIPTGIDLDRFEPVDG--DDERRKLGIPEDE-PVLLYV 208 (374)
T ss_pred HHHHHHHHHHHHhhhCCEEEeccHHHHHHHHh-cCC-CCceEEcCCccchhccCccch--hHHHHhcCCCCCC-eEEEEE
Confidence 11111022346788999999999999999887 454 356999999999887765433 2235556665554 788999
Q ss_pred cccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCC
Q 039338 318 GRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLR 391 (493)
Q Consensus 318 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~ 391 (493)
|++.+.||++.+++++..+.+++++++++++|+|+..+.++++ .++|.++|+++++++.++|+.||++++|+.
T Consensus 209 G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~- 287 (374)
T cd03817 209 GRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST- 287 (374)
T ss_pred eeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc-
Confidence 9999999999999999999988889999999998876665543 378999999999999999999999999996
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCH
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTA 470 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 470 (493)
.|++|++++|||++|+|||+++.++.. +++.++.+|+++++ +. +++++|.+++++ ++.+++|++++++.+++. +
T Consensus 288 ~e~~~~~~~Ea~~~g~PvI~~~~~~~~-~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~-~- 362 (374)
T cd03817 288 TETQGLVLLEAMAAGLPVVAVDAPGLP-DLVADGENGFLFPPGDE-ALAEALLRLLQD-PELRRRLSKNAEESAEKF-S- 362 (374)
T ss_pred ccCcChHHHHHHHcCCcEEEeCCCChh-hheecCceeEEeCCCCH-HHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH-H-
Confidence 599999999999999999999999988 89999999999998 55 999999999999 888899999999999874 3
Q ss_pred HHHHHHHHHHHHH
Q 039338 471 NKMALAYERLFLC 483 (493)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (493)
.+++++++|++
T Consensus 363 --~~~~~~~~~~~ 373 (374)
T cd03817 363 --FAKKVEKLYEE 373 (374)
T ss_pred --HHHHHHHHHhc
Confidence 66777777765
No 38
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.8e-37 Score=303.21 Aligned_cols=359 Identities=23% Similarity=0.258 Sum_probs=259.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||+++++.+++ ..||+++++..++++|++.||+|++++..... ......... .....................
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 73 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGG--DPLLVALNG---VPVKLFSINVAYGLNLARYLF 73 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCC--ccchhhccC---ceeeecccchhhhhhhhhhcc
Confidence 69999998864 88999999999999999999999999987655 211111000 000000000000000000111
Q ss_pred cchHHHHHHhcCCCCcEEEeCccch-h----HHh--hhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVAL-P----HWL--ARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQ 237 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~-~----~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (493)
.............++|+||+++... . ... ..+.| ++++.|+....... ....+.
T Consensus 74 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~------------------~~~~~~ 134 (375)
T cd03821 74 PPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIP-YVVSPHGMLDPWAL------------------PHKALK 134 (375)
T ss_pred ChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCC-EEEEcccccccccc------------------ccchhh
Confidence 1111222223456899999987421 1 111 13456 89999985432110 001222
Q ss_pred HHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEe
Q 039338 238 GVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVA 317 (493)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~ 317 (493)
..+.....+...++.++.+++.|+......... .+..++.++|||+|.+.+.+...... ++.++.+.++ ++++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~ 209 (375)
T cd03821 135 KRLAWFLFERRLLQAAAAVHATSEQEAAEIRRL--GLKAPIAVIPNGVDIPPFAALPSRGR--RRKFPILPDK-RIILFL 209 (375)
T ss_pred hHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhh--CCcccEEEcCCCcChhccCcchhhhh--hhhccCCCCC-cEEEEE
Confidence 223333334566788999999998877776653 35678999999999988765443222 5556666555 788999
Q ss_pred cccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCc--HHHHh----hh--cCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 318 GRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW--EQRYK----DF--GHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 318 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~~~----~l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
|++.+.||++.+++++..+.+++++++++++|.+.. ....+ ++ .++|.|+|+++++++.++|+.||++++||
T Consensus 210 G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps 289 (375)
T cd03821 210 GRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPS 289 (375)
T ss_pred eCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEecc
Confidence 999999999999999999998889999999997643 22222 22 37899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
.. ||+|++++|||++|+|||+++.++.. +++.+ ..|++++.++++++++|.+++++ ++.++++++++++.+.++|+
T Consensus 290 ~~-e~~~~~~~Eama~G~PvI~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s 365 (375)
T cd03821 290 HS-ENFGIVVAEALACGTPVVTTDKVPWQ-ELIEY-GCGWVVDDDVDALAAALRRALEL-PQRLKAMGENGRALVEERFS 365 (375)
T ss_pred cc-CCCCcHHHHHHhcCCCEEEcCCCCHH-HHhhc-CceEEeCCChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcC
Confidence 75 99999999999999999999999988 77777 88999988779999999999999 79999999999999888999
Q ss_pred HHHHHHHHH
Q 039338 470 ANKMALAYE 478 (493)
Q Consensus 470 ~~~~~~~~~ 478 (493)
|+.++++++
T Consensus 366 ~~~~~~~~~ 374 (375)
T cd03821 366 WTAIAQQLL 374 (375)
T ss_pred HHHHHHHhh
Confidence 999999886
No 39
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.7e-37 Score=303.39 Aligned_cols=337 Identities=25% Similarity=0.342 Sum_probs=257.4
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..||+ |.+.++.++++.|.++||+|++++..... ....... .......+... ...+...
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~--~~~~~~~-----~~~~~~~~~~~---~~~~~~~ 65 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPE--DTLVHPE-----DRAELARTRYL---ARSLALL 65 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCcc--ccccccc-----ccccccchHHH---HHHHHHH
Confidence 69999999864 36889999999999999999999987655 2111100 00000011111 1112222
Q ss_pred cchHHHHHHhcCCCCcEEEeCccc---hhHHhhh---ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVA---LPHWLAR---NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~---~~~~~~~---~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
.....+.+.+++.++|+||+|... ...++.. +.+ ++.+.|+....... ..
T Consensus 66 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------------~~-- 121 (355)
T cd03799 66 AQALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIP-YSFTAHGKDIFRSP---------------------DA-- 121 (355)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcCCC-EEEEEecccccccC---------------------ch--
Confidence 222334444457899999998652 2222222 345 88888864321100 00
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
..+...++.+|.++++|+.+++.+.+.++.+..++.+++||+|.+.+.+... ...++++.|+++|
T Consensus 122 -----~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~----------~~~~~~~~i~~~g 186 (355)
T cd03799 122 -----IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP----------PPPGEPLRILSVG 186 (355)
T ss_pred -----HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc----------cccCCCeEEEEEe
Confidence 1123557889999999999999999976778889999999999887765430 0123347889999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCC
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~ 392 (493)
++.+.||++.+++++..+.+++++++++++|.++..+.+++. .++|.+.|+++++++.++|++||++++||..+
T Consensus 187 ~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~ 266 (355)
T cd03799 187 RLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTA 266 (355)
T ss_pred eeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceec
Confidence 999999999999999999888889999999998876655442 37899999999999999999999999999643
Q ss_pred -----CCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 039338 393 -----QGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAAS 466 (493)
Q Consensus 393 -----eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 466 (493)
||+|++++|||++|+|||+++.++.+ +++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++.+++
T Consensus 267 ~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~a~~~~~~ 344 (355)
T cd03799 267 ADGDREGLPVVLMEAMAMGLPVISTDVSGIP-ELVEDGETGLLVPPGDPEALADAIERLLDD-PELRREMGEAGRARVEE 344 (355)
T ss_pred CCCCccCccHHHHHHHHcCCCEEecCCCCcc-hhhhCCCceEEeCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 89988889999998 999999999999999 88899999999999999
Q ss_pred hcCHHHHHHHH
Q 039338 467 MFTANKMALAY 477 (493)
Q Consensus 467 ~fs~~~~~~~~ 477 (493)
.|||+..++++
T Consensus 345 ~~s~~~~~~~l 355 (355)
T cd03799 345 EFDIRKQAARL 355 (355)
T ss_pred hcCHHHHhhcC
Confidence 99999998763
No 40
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.6e-37 Score=301.30 Aligned_cols=347 Identities=21% Similarity=0.225 Sum_probs=246.6
Q ss_pred EEEEEec-cCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC-Ccc-
Q 039338 85 KIAVFSR-KWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA-DKW- 161 (493)
Q Consensus 85 kIl~v~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 161 (493)
||++++. .+|+ ..||+++++.+++++|.++||+|+|++..... ...... .....+....... ...
T Consensus 1 ~i~~i~~~~~~~--~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~--~~~~~~--------~~~i~~~~~~~~~~~~~~ 68 (363)
T cd04955 1 KIAIIGTRGIPA--KYGGFETFVEELAPRLVARGHEVTVYCRSPYP--KQKETE--------YNGVRLIHIPAPEIGGLG 68 (363)
T ss_pred CeEEEecCcCCc--ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCC--CCcccc--------cCCceEEEcCCCCccchh
Confidence 6899966 4665 78999999999999999999999999986554 111111 1111122211111 111
Q ss_pred ccccchHHHHHHh-cCCCCcEEEeCccch--hHHhh--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHH
Q 039338 162 RYSKGWEQFDEEN-QREPFDVVHSESVAL--PHWLA--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSL 236 (493)
Q Consensus 162 ~~~~~~~~~~~~~-~~~~~DiI~~~~~~~--~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
.....+..+.... .+.++|+||..++.. ...+. .+.| ++++.|+..+.... . ...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~v~~~h~~~~~~~~-------~------------~~~ 128 (363)
T cd04955 69 TIIYDILAILHALFVKRDIDHVHALGPAIAPFLPLLRLKGKK-VVVNMDGLEWKRAK-------W------------GRP 128 (363)
T ss_pred hhHHHHHHHHHHHhccCCeEEEEecCccHHHHHHHHHhcCCC-EEEEccCcceeecc-------c------------ccc
Confidence 0111111222222 345666666655432 11112 2345 99999985322100 0 000
Q ss_pred HHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEE
Q 039338 237 QGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGV 316 (493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~ 316 (493)
...+.+. .+...++.+|.++++|+..++.+.+.+|.+ . .+||||+|...+.+ ....+++++++++. .+++
T Consensus 129 ~~~~~~~-~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~--~-~~i~ngv~~~~~~~----~~~~~~~~~~~~~~--~i~~ 198 (363)
T cd04955 129 AKRYLKF-GEKLAVKFADRLIADSPGIKEYLKEKYGRD--S-TYIPYGADHVVSSE----EDEILKKYGLEPGR--YYLL 198 (363)
T ss_pred hhHHHHH-HHHHHHhhccEEEeCCHHHHHHHHHhcCCC--C-eeeCCCcChhhcch----hhhhHHhcCCCCCc--EEEE
Confidence 0111111 123557889999999999999998777753 2 89999999876544 12334555655443 4679
Q ss_pred ecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH----HHh-h--hcCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 317 AGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ----RYK-D--FGHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 317 ~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~----~~~-~--l~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
+||+.+.||++.+++|++++.. +++|+++|+|+... .++ + +.++|+|+|+++++++.++|++||++++||
T Consensus 199 ~G~~~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps 275 (363)
T cd04955 199 VGRIVPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHG 275 (363)
T ss_pred EecccccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCC
Confidence 9999999999999999998864 78999999974332 222 1 238999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMF 468 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~f 468 (493)
...|++|++++|||+||+|||+++.++.. |++.+ +|.++++ |. ++++|.+++++ ++.+.++++++++.+.+.|
T Consensus 276 ~~~e~~~~~~~EAma~G~PvI~s~~~~~~-e~~~~--~g~~~~~~~~--l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~f 349 (363)
T cd04955 276 HSVGGTNPSLLEAMAYGCPVLASDNPFNR-EVLGD--KAIYFKVGDD--LASLLEELEAD-PEEVSAMAKAARERIREKY 349 (363)
T ss_pred ccCCCCChHHHHHHHcCCCEEEecCCccc-eeecC--CeeEecCchH--HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhC
Confidence 65599999999999999999999999988 77654 7888887 44 99999999999 8899999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 039338 469 TANKMALAYERLFL 482 (493)
Q Consensus 469 s~~~~~~~~~~~~~ 482 (493)
||+.+++++.++|+
T Consensus 350 s~~~~~~~~~~~y~ 363 (363)
T cd04955 350 TWEKIADQYEELYK 363 (363)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999984
No 41
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=3.5e-37 Score=301.08 Aligned_cols=343 Identities=25% Similarity=0.309 Sum_probs=255.4
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC-----CC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE-----AD 159 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 159 (493)
||+++++.||+ ...||+++++..++++|.++||+|++++..... .......................... ..
T Consensus 1 kIl~i~~~~~~-~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (359)
T cd03823 1 RILVVNHLYPP-RSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDP--PRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLS 77 (359)
T ss_pred CeeEEcccCCc-ccccchHHHHHHHHHHHHhcCCceEEEeCCCCC--CCcccccccceeeccccccccCCCchhhhhHHH
Confidence 69999998876 467999999999999999999999999987655 21111100000000000000000000 00
Q ss_pred ccccccchHHHHHHhcCCCCcEEEeCccch---hH---HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhH
Q 039338 160 KWRYSKGWEQFDEENQREPFDVVHSESVAL---PH---WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFN 233 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~DiI~~~~~~~---~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
..........+.+.+++.+||+||++.... .. .....+| ++.++|+.+.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~-~i~~~hd~~~~~~~~~------------------ 138 (359)
T cd03823 78 DYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIP-IVLTLHDYWLICPRQG------------------ 138 (359)
T ss_pred hccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCC-EEEEEeeeeeecchhh------------------
Confidence 011122345566667788999999987421 11 1223456 9999998653221110
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEE
Q 039338 234 KSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLV 313 (493)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~ 313 (493)
......|.++++|+...+.+.+. +.+..++.+++||+|...+.+... +.+ +++++
T Consensus 139 --------------~~~~~~d~ii~~s~~~~~~~~~~-~~~~~~~~vi~n~~~~~~~~~~~~---------~~~-~~~~~ 193 (359)
T cd03823 139 --------------LFKKGGDAVIAPSRFLLDRYVAN-GLFAEKISVIRNGIDLDRAKRPRR---------APP-GGRLR 193 (359)
T ss_pred --------------hhccCCCEEEEeCHHHHHHHHHc-CCCccceEEecCCcChhhcccccc---------CCC-CCceE
Confidence 01123399999999999999884 444679999999999987654321 122 33488
Q ss_pred EEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh---hcCcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 314 LGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD---FGHQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~---l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
|+++|++.+.||++.++++++.+.+ ++++|+++|.++....... ..++|.++|+++++++.++|++||++++||.
T Consensus 194 i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~ 271 (359)
T cd03823 194 FGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSI 271 (359)
T ss_pred EEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCc
Confidence 9999999999999999999999976 6899999998876554433 3489999999999999999999999999997
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
..||+|++++|||++|+|||+++.++.. |++.++.+|+++++ |++++++++.+++++ ++.++.+++++++....
T Consensus 272 ~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~--- 346 (359)
T cd03823 272 WPENFPLVIREALAAGVPVIASDIGGMA-ELVRDGVNGLLFPPGDAEDLAAALERLIDD-PDLLERLRAGIEPPRSI--- 346 (359)
T ss_pred ccCCCChHHHHHHHCCCCEEECCCCCHH-HHhcCCCcEEEECCCCHHHHHHHHHHHHhC-hHHHHHHHHhHHHhhhH---
Confidence 5699999999999999999999999988 88888889999999 999999999999998 89999999998887643
Q ss_pred HHHHHHHHHHHHH
Q 039338 470 ANKMALAYERLFL 482 (493)
Q Consensus 470 ~~~~~~~~~~~~~ 482 (493)
+.++++++++|+
T Consensus 347 -~~~~~~~~~~~~ 358 (359)
T cd03823 347 -EDQAEEYLKLYR 358 (359)
T ss_pred -HHHHHHHHHHhh
Confidence 899999999886
No 42
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.7e-37 Score=302.87 Aligned_cols=338 Identities=16% Similarity=0.163 Sum_probs=240.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
|||++++..+| ..||+++++.+++++|.++ ||+|.+++..... .. ......... ........ ...
T Consensus 1 mkI~~~~~~~~---~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~--~~--~~~~~~~~~-~~~~~~~~-----~~~ 67 (359)
T PRK09922 1 MKIAFIGEAVS---GFGGMETVISNVINTFEESKINCEMFFFCRNDKM--DK--AWLKEIKYA-QSFSNIKL-----SFL 67 (359)
T ss_pred CeeEEeccccc---CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC--Ch--HHHHhcchh-cccccchh-----hhh
Confidence 89999998653 5699999999999999999 8999998875543 11 000000000 00000100 111
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCccchhH--Hhh-h--ccCc-EEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhH
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSESVALPH--WLA-R--NVTN-LAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKS 235 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~--~~~-~--~~p~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (493)
........+.+.+++.+||+||+|+..... .+. + +.|. ++.+.|..... .
T Consensus 68 ~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~------------------------~ 123 (359)
T PRK09922 68 RRAKHVYNFSKWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLDH------------------------K 123 (359)
T ss_pred cccHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCcccc------------------------c
Confidence 112334666777888999999999753211 111 1 2221 34444531100 0
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEE
Q 039338 236 LQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLG 315 (493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~ 315 (493)
.... ...+..+|.++++|+..++.+.+ ++++.+++.+|+||+|.+.+..... ..+++++++
T Consensus 124 ~~~~-------~~~~~~~d~~i~~S~~~~~~~~~-~~~~~~ki~vi~N~id~~~~~~~~~-----------~~~~~~~i~ 184 (359)
T PRK09922 124 KHAE-------CKKITCADYHLAISSGIKEQMMA-RGISAQRISVIYNPVEIKTIIIPPP-----------ERDKPAVFL 184 (359)
T ss_pred chhh-------hhhhhcCCEEEEcCHHHHHHHHH-cCCCHHHEEEEcCCCCHHHccCCCc-----------ccCCCcEEE
Confidence 0000 01136799999999999999987 6888889999999999654432111 012237788
Q ss_pred Eecccc--cccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCC--HHHHHHHHHHcCEE
Q 039338 316 VAGRLV--KDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMS--PAELRAFYNAIDIF 385 (493)
Q Consensus 316 ~~Gr~~--~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~--~~~~~~~~~~adv~ 385 (493)
++||+. +.||++.+++++..+. ++++|+++|+|+..+.++++ .++|.|+|+++ .+++.++|+.+|++
T Consensus 185 ~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~ 261 (359)
T PRK09922 185 YVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSAL 261 (359)
T ss_pred EEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEE
Confidence 999986 4699999999999874 37999999999887766553 27899999884 47899999999999
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEecC-CCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 039338 386 VNPTLRPQGLDLTLMEAMMSGKPVMASR-FPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQY 463 (493)
Q Consensus 386 v~ps~~~eg~~~~~~EAm~~G~PvI~s~-~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 463 (493)
|+||.. ||||++++|||+||+|||+++ .+|.. |++.++.+|+++++ |+++++++|.+++++ ++.+. ..+...
T Consensus 262 v~~s~~-Egf~~~~lEAma~G~Pvv~s~~~~g~~-eiv~~~~~G~lv~~~d~~~la~~i~~l~~~-~~~~~---~~~~~~ 335 (359)
T PRK09922 262 LLTSKF-EGFPMTLLEAMSYGIPCISSDCMSGPR-DIIKPGLNGELYTPGNIDEFVGKLNKVISG-EVKYQ---HDAIPN 335 (359)
T ss_pred EECCcc-cCcChHHHHHHHcCCCEEEeCCCCChH-HHccCCCceEEECCCCHHHHHHHHHHHHhC-cccCC---HHHHHH
Confidence 999964 999999999999999999999 78877 89999999999998 999999999999999 65331 222222
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhh
Q 039338 464 AASMFTANKMALAYERLFLCIKN 486 (493)
Q Consensus 464 ~~~~fs~~~~~~~~~~~~~~i~~ 486 (493)
...+|+.++..+++.++|..+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 336 SIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhc
Confidence 33447889999999999988765
No 43
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.1e-36 Score=301.67 Aligned_cols=358 Identities=16% Similarity=0.189 Sum_probs=244.8
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC-Cc
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA-DK 160 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 160 (493)
++.||++++. ..+|.+.++..+++.|+++||+|++++..... .. .+. .......++...... ..
T Consensus 2 ~~~~~~~~~~------~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~--~~-~~~------~~~~~v~~~~~~~~~~~~ 66 (415)
T cd03816 2 KRKRVCVLVL------GDIGRSPRMQYHALSLAKHGWKVDLVGYLETP--PH-DEI------LSNPNITIHPLPPPPQRL 66 (415)
T ss_pred CccEEEEEEe------cccCCCHHHHHHHHHHHhcCceEEEEEecCCC--CC-HHH------hcCCCEEEEECCCCcccc
Confidence 4567888886 34677778899999999999999999976533 11 110 001111222222211 01
Q ss_pred cccc-------c----chHHHHHHhcCCCCcEEEeCccc-h----hHHh-h--hccCcEEEEeccchhhhhhhhhhhhhh
Q 039338 161 WRYS-------K----GWEQFDEENQREPFDVVHSESVA-L----PHWL-A--RNVTNLAVSWHGIALESLQSGIFQDLT 221 (493)
Q Consensus 161 ~~~~-------~----~~~~~~~~~~~~~~DiI~~~~~~-~----~~~~-~--~~~p~~v~~~h~~~~~~~~~~~~~~~~ 221 (493)
.... . .+..+..+++..+||+||+|+.. + .+++ . .+.| +++++|+.++..... ...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~-~V~~~h~~~~~~~~~----~~~ 141 (415)
T cd03816 67 NKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTK-LIIDWHNYGYTILAL----KLG 141 (415)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCe-EEEEcCCchHHHHhc----ccC
Confidence 1110 1 11222223456789999998642 1 1222 1 2345 999999865321100 000
Q ss_pred cCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchh--
Q 039338 222 RKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQS-- 299 (493)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~-- 299 (493)
.. ..+ ..+...+ +..+++.+|.++++|+.+++.+.+ ++.+.+++.+|+||.+ ..|.+.+.....
T Consensus 142 --~~----~~~-~~~~~~~-----e~~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~-~~f~p~~~~~~~~~ 207 (415)
T cd03816 142 --EN----HPL-VRLAKWY-----EKLFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPP-EQFRPLPLEEKHEL 207 (415)
T ss_pred --CC----CHH-HHHHHHH-----HHHHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCH-HHceeCcHHHHHHH
Confidence 00 000 1122222 335678899999999999999988 7888899999999954 455543321111
Q ss_pred hhh-------------hhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhh------CCCeEEEEEeCCCcHHHHhhh
Q 039338 300 FRS-------------RIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVK------YPDVYLIVAGSGPWEQRYKDF 360 (493)
Q Consensus 300 ~r~-------------~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~------~~~~~l~i~G~g~~~~~~~~l 360 (493)
+.. ..++..++..+++++||+.+.||++.+++|+..+++. +|+++|+|+|+|+.++.++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~ 287 (415)
T cd03816 208 FLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLER 287 (415)
T ss_pred HHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHH
Confidence 110 1223344557788999999999999999999999752 468999999999987766543
Q ss_pred ----c-CcEEEe-cCCCHHHHHHHHHHcCEEEeCC--CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEEC
Q 039338 361 ----G-HQVLVM-GSMSPAELRAFYNAIDIFVNPT--LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFA 432 (493)
Q Consensus 361 ----~-~~V~~~-g~~~~~~~~~~~~~adv~v~ps--~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~ 432 (493)
+ +++.++ |+++.+++.++|++||+++.|+ ..++++|++++|||+||+|||+++.++.. |++.++.+|++++
T Consensus 288 ~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~-eiv~~~~~G~lv~ 366 (415)
T cd03816 288 IKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID-ELVKHGENGLVFG 366 (415)
T ss_pred HHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH-HHhcCCCCEEEEC
Confidence 2 456655 6899999999999999998743 23478999999999999999999999988 9999999999996
Q ss_pred CCHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 433 PNVESLHKTLEAAVSE--GPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 433 ~d~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
|+++++++|.++++| +++.+++|++++++..+ ++|++..++.
T Consensus 367 -d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~~~ 410 (415)
T cd03816 367 -DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE--LRWDENWDRV 410 (415)
T ss_pred -CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--cCHHHHHHHH
Confidence 999999999999998 36889999999999885 4666654443
No 44
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=2.7e-37 Score=302.80 Aligned_cols=356 Identities=21% Similarity=0.216 Sum_probs=260.6
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++++..++++ ..||+++++.+++++|++.||+|++++..... ......... ..................
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 71 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAP--GLLLLPLRA------ALRLLLRLPRRLLWGLLF 71 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcc--ccccccchh------ccccccccccccccchhh
Confidence 689999987543 68999999999999999999999999987765 211111000 000000000000111111
Q ss_pred cchHHHHHHhcCCCCcEEEeCccchhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVALPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVL 244 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (493)
.............++|+||+++.........+.| ++.++|+..+........ .........
T Consensus 72 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~-~i~~~hd~~~~~~~~~~~----------------~~~~~~~~~-- 132 (365)
T cd03809 72 LLRAGDRLLLLLLGLDLLHSPHNTAPLLRLRGVP-VVVTIHDLIPLRFPEYFS----------------PGFRRYFRR-- 132 (365)
T ss_pred HHHHHHHHHhhhcCCCeeeecccccCcccCCCCC-EEEEeccchhhhCcccCC----------------HHHHHHHHH--
Confidence 1122223333457899999997654443344556 999999875433211100 001111111
Q ss_pred HHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccccccc
Q 039338 245 NEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDK 324 (493)
Q Consensus 245 ~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~K 324 (493)
.+...++++|.++++|+.+++.+.+.++.+..++.+++||+|...+....... +.......+. .+|+++|++.+.|
T Consensus 133 ~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~i~~~G~~~~~K 208 (365)
T cd03809 133 LLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE---VLRALYLLPR-PYFLYVGTIEPRK 208 (365)
T ss_pred HHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH---HHHHhcCCCC-CeEEEeCCCcccc
Confidence 12366789999999999999999998887788999999999988776543221 2333334444 7888999999999
Q ss_pred ChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH--HHh---h--hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 325 GHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ--RYK---D--FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 325 g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~--~~~---~--l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
|++.+++++..+.+.+++++++++|.+.... ..+ + +.++|.++|+++++++.++|+.||++++||.. |++|+
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~-e~~~~ 287 (365)
T cd03809 209 NLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLY-EGFGL 287 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchh-ccCCC
Confidence 9999999999999988789999999754322 221 2 34899999999999999999999999999964 99999
Q ss_pred HHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALA 476 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 476 (493)
+++|||++|+|||+++.++.. |++ +..|+++++ |+++++++|.+++++ ++.+.++++++++.+++ |+|++++++
T Consensus 288 ~~~Ea~a~G~pvI~~~~~~~~-e~~--~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~-~sw~~~~~~ 362 (365)
T cd03809 288 PVLEAMACGTPVIASNISSLP-EVA--GDAALYFDPLDPEALAAAIERLLED-PALREELRERGLARAKR-FSWEKTARR 362 (365)
T ss_pred CHHHHhcCCCcEEecCCCCcc-cee--cCceeeeCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh-CCHHHHHHH
Confidence 999999999999999999988 766 356888888 999999999999998 99999999999976655 999999998
Q ss_pred HH
Q 039338 477 YE 478 (493)
Q Consensus 477 ~~ 478 (493)
+.
T Consensus 363 ~~ 364 (365)
T cd03809 363 TL 364 (365)
T ss_pred Hh
Confidence 75
No 45
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=3.5e-36 Score=292.82 Aligned_cols=355 Identities=15% Similarity=0.094 Sum_probs=240.0
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC-CEEEEEecCCCCCCCCCCccc---------cCCCCCC-CCCCc
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRG-HRVHIFTSPVDNINSPSISHQ---------ENDDGSN-NKYPL 150 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~ 150 (493)
.+|||+++|..|+| ..+|+...+..++.+|+++| |+|+++.+......+ ..... +...... .....
T Consensus 3 ~~mrIaivTdt~lP--~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~-~~~~~~~~~f~~~~~~e~~~~~~~~~~ 79 (462)
T PLN02846 3 KKQHIAIFTTASLP--WMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQ-KLVYPNKITFSSPSEQEAYVRQWLEER 79 (462)
T ss_pred CCCEEEEEEcCCCC--CCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccc-cccccccccccCchhhhhhhhhhccCe
Confidence 47999999999987 88999999999999999999 899999986543101 00000 0000000 00011
Q ss_pred eEeecC-----CCCcc----ccccchHHHHHHhcCCCCcEEEeCccchhHHh--h----h-ccCcEEEEeccchhhhhhh
Q 039338 151 LHFHEG-----EADKW----RYSKGWEQFDEENQREPFDVVHSESVALPHWL--A----R-NVTNLAVSWHGIALESLQS 214 (493)
Q Consensus 151 ~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~--~----~-~~p~~v~~~h~~~~~~~~~ 214 (493)
+..... .+..+ ........+.+.+++.+|||||++++....|. + + ..+ ++.++|.-...+...
T Consensus 80 v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~~ 158 (462)
T PLN02846 80 ISFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIGIVHTNYLEYVKR 158 (462)
T ss_pred EEEecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEEEECCChHHHHHH
Confidence 111111 11111 11112356777788899999999998655553 1 1 234 677899733222110
Q ss_pred hhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCc
Q 039338 215 GIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDL 294 (493)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~ 294 (493)
+. . ......+.+.+.+++. + ..+|.++++|....+ +.+ .+.+..+|||.+.|.+..
T Consensus 159 --~~------~----g~~~~~l~~~~~~~~~--r--~~~d~vi~pS~~~~~-l~~-------~~i~~v~GVd~~~f~~~~ 214 (462)
T PLN02846 159 --EK------N----GRVKAFLLKYINSWVV--D--IYCHKVIRLSAATQD-YPR-------SIICNVHGVNPKFLEIGK 214 (462)
T ss_pred --hc------c----chHHHHHHHHHHHHHH--H--HhcCEEEccCHHHHH-Hhh-------CEEecCceechhhcCCCc
Confidence 00 0 0001122222333221 1 238999999986655 332 234445899999887654
Q ss_pred ccchhhhhhhCCCCCC-cEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc-----CcEEEec
Q 039338 295 SLGQSFRSRIGIPKNA-SLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG-----HQVLVMG 368 (493)
Q Consensus 295 ~~~~~~r~~~~i~~~~-~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~-----~~V~~~g 368 (493)
.. .++.++ +++. ...++|+||+.++||++.++++++.+.+..++++|+|+|+|+.++.++++. +...|.|
T Consensus 215 ~~---~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G 290 (462)
T PLN02846 215 LK---LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPG 290 (462)
T ss_pred cc---HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECC
Confidence 32 222222 2222 136789999999999999999999998877899999999999988877654 2234777
Q ss_pred CCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 369 SMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 369 ~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
..+. .++|+.+|++|+||.. |++|++++||||||+|||+++.++ . +++.++.+|+.++ |.+++++++.+++.+
T Consensus 291 ~~~~---~~~~~~~DvFv~pS~~-Et~g~v~lEAmA~G~PVVa~~~~~-~-~~v~~~~ng~~~~-~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 291 RDHA---DPLFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS-N-EFFKQFPNCRTYD-DGKGFVRATLKALAE 363 (462)
T ss_pred CCCH---HHHHHhCCEEEECCCc-ccchHHHHHHHHcCCcEEEecCCC-c-ceeecCCceEecC-CHHHHHHHHHHHHcc
Confidence 6543 3799999999999965 999999999999999999999987 4 8899999999996 899999999999987
Q ss_pred CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 449 GPMRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
.++ .++.+++ +.|||+..++++.++|+
T Consensus 364 ~~~---~~~~~a~----~~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 364 EPA---PLTDAQR----HELSWEAATERFLRVAD 390 (462)
T ss_pred Cch---hHHHHHH----HhCCHHHHHHHHHHHhc
Confidence 332 2223332 36999999999999996
No 46
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=3.4e-37 Score=301.65 Aligned_cols=336 Identities=21% Similarity=0.268 Sum_probs=245.4
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||+++++.+ ..||.++++.+++++|.+.||+|++++..... ....... ...+...+. . ........
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~--~~~~~~~-----~~~~~~~~~-~--~~~~~~~~ 66 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE--GDYDDEI-----EKLGGKIYY-I--PARKKNPL 66 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCC--cchHHHH-----HHcCCeEEE-e--cCCCccHH
Confidence 699999876 67999999999999999999999999976544 1111110 011111111 1 11222223
Q ss_pred cchHHHHHHhcCCCCcEEEeCccch---hHHhhh--ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVAL---PHWLAR--NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~---~~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
.....+.+.+++.+||+||+|+... ..++.+ ..|.++.+.|+........ . .....
T Consensus 67 ~~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~----~~~~~- 127 (358)
T cd03812 67 KYFKKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKK--------------K----KILKY- 127 (358)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEecccccccccc--------------c----hhhHH-
Confidence 3345556666788999999997632 222222 3354566777643221000 0 00000
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
...+..+++.++.++++|+...+.+.+. ....++.+||||+|.+.+.+....... +++.+...++ ++|+|+||
T Consensus 128 ---~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~~~~~~~vi~ngvd~~~~~~~~~~~~~-~~~~~~~~~~-~~i~~vGr 200 (358)
T cd03812 128 ---KVLRKLINRLATDYLACSEEAGKWLFGK--VKNKKFKVIPNGIDLEKFIFNEEIRKK-RRELGILEDK-FVIGHVGR 200 (358)
T ss_pred ---HHHHHHHHhcCCEEEEcCHHHHHHHHhC--CCcccEEEEeccCcHHHcCCCchhhhH-HHHcCCCCCC-EEEEEEec
Confidence 1112345678999999999999998775 467899999999999877655433332 4555665555 88999999
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+.+.||++.+++++..+.+++++++++++|+|+..+.+++. .++|.++|+ .+++.++|+.||++|+||. .|
T Consensus 201 ~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~-~E 277 (358)
T cd03812 201 FSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSL-YE 277 (358)
T ss_pred cccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEeccc-cc
Confidence 99999999999999999998899999999999876655443 278999999 4789999999999999996 49
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAAS 466 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 466 (493)
|+|++++|||++|+|||+++.++.. +++.+ ..|++..+ ++++++++|.+++++ ++.++.++..+......
T Consensus 278 ~~~~~~lEAma~G~PvI~s~~~~~~-~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~~~~~~~~~~~~ 348 (358)
T cd03812 278 GLPLVLIEAQASGLPCILSDTITKE-VDLTD-LVKFLSLDESPEIWAEEILKLKSE-DRRERSSESIKKKGLDA 348 (358)
T ss_pred CCCHHHHHHHHhCCCEEEEcCCchh-hhhcc-CccEEeCCCCHHHHHHHHHHHHhC-cchhhhhhhhhhccchh
Confidence 9999999999999999999999998 77777 45666666 789999999999999 88888888777766554
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=3.6e-36 Score=294.95 Aligned_cols=339 Identities=22% Similarity=0.278 Sum_probs=250.2
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||+||+..+| ..||+++++.+|+++|.+.||+|++++..... ...... ... ...... .....
T Consensus 1 kI~~v~~~~~---~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~-------~~~-~~~~~~-----~~~~~ 62 (366)
T cd03822 1 RIALVSPYPP---RKCGIATFTTDLVNALSARGPDVLVVSVAALY--PSLLYG-------GEQ-EVVRVI-----VLDNP 62 (366)
T ss_pred CeEEecCCCC---CCCcHHHHHHHHHHHhhhcCCeEEEEEeeccc--CcccCC-------Ccc-cceeee-----ecCCc
Confidence 6999987543 57999999999999999999999999876544 111111 000 001111 11122
Q ss_pred cchHHHHHHhcCCCCcEEEeCcc------chhHHhh-----hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhH
Q 039338 165 KGWEQFDEENQREPFDVVHSESV------ALPHWLA-----RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFN 233 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~------~~~~~~~-----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
..+..+.+.++..+||+||++.. .....+. .+.| ++.++|+..... .
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~---------------~------ 120 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIP-VVVTLHTVLLHE---------------P------ 120 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCC-EEEEEecCCccc---------------c------
Confidence 23345566667889999998752 1111111 3446 999999861100 0
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEcC-hhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcE
Q 039338 234 KSLQGVMLKVLNEIRFFNKYAHHVAIS-DSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASL 312 (493)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~ii~~S-~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~ 312 (493)
......+ ....++.+|.++++| +...+.+.. . ..+++.+++||++...+...... ++...+.++ +
T Consensus 121 ~~~~~~~-----~~~~~~~~d~ii~~s~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~-~ 186 (366)
T cd03822 121 RPGDRAL-----LRLLLRRADAVIVMSSELLRALLLR-A--YPEKIAVIPHGVPDPPAEPPESL-----KALGGLDGR-P 186 (366)
T ss_pred chhhhHH-----HHHHHhcCCEEEEeeHHHHHHHHhh-c--CCCcEEEeCCCCcCcccCCchhh-----HhhcCCCCC-e
Confidence 0111111 125578899999996 444444333 1 14799999999998766543211 222333343 7
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHH---------Hhhhc--CcEEEecC-CCHHHHHHHHH
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQR---------YKDFG--HQVLVMGS-MSPAELRAFYN 380 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~---------~~~l~--~~V~~~g~-~~~~~~~~~~~ 380 (493)
+++++|++.+.||++.+++++..+.+++++++|+++|++..... +++++ ++|.|+|. ++.+++.++|+
T Consensus 187 ~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~ 266 (366)
T cd03822 187 VLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFS 266 (366)
T ss_pred EEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHh
Confidence 88999999999999999999999999889999999998653221 33433 79999987 99999999999
Q ss_pred HcCEEEeCCCCCC--CCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 381 AIDIFVNPTLRPQ--GLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 381 ~adv~v~ps~~~e--g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
.||++++||. .| ++|.+++|||++|+|||+++.++ . +.+.++.+|+++++ |+++++++|.+++++ ++.+.+++
T Consensus 267 ~ad~~v~ps~-~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~-~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~-~~~~~~~~ 342 (366)
T cd03822 267 AADVVVLPYR-SADQTQSGVLAYAIGFGKPVISTPVGH-A-EEVLDGGTGLLVPPGDPAALAEAIRRLLAD-PELAQALR 342 (366)
T ss_pred hcCEEEeccc-ccccccchHHHHHHHcCCCEEecCCCC-h-heeeeCCCcEEEcCCCHHHHHHHHHHHHcC-hHHHHHHH
Confidence 9999999996 48 99999999999999999999998 5 66788889999998 999999999999998 88999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 458 EACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 458 ~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
+++++.+++ |||+.+++++.++|+
T Consensus 343 ~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 343 ARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred HHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 999999988 999999999999873
No 48
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=278.19 Aligned_cols=354 Identities=22% Similarity=0.278 Sum_probs=266.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC-----
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA----- 158 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 158 (493)
++|++|++.| .+..||++.++..|++.|-+.||.|.+++-...+ ...... ...+ -.+++.+...
T Consensus 1 ~~i~mVsdff--~P~~ggveshiy~lSq~li~lghkVvvithayg~--r~giry------lt~g-lkVyylp~~v~~n~t 69 (426)
T KOG1111|consen 1 SRILMVSDFF--YPSTGGVESHIYALSQCLIRLGHKVVVITHAYGN--RVGIRY------LTNG-LKVYYLPAVVGYNQT 69 (426)
T ss_pred CcceeeCccc--ccCCCChhhhHHHhhcchhhcCCeEEEEeccccC--ccceee------ecCC-ceEEEEeeeeeeccc
Confidence 4699999977 3489999999999999999999999999987766 222222 1111 2333332211
Q ss_pred CccccccchHHHHHHhcCCCCcEEEeCcc-------chhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchH
Q 039338 159 DKWRYSKGWEQFDEENQREPFDVVHSESV-------ALPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLA 231 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~DiI~~~~~-------~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (493)
........+..++.+..++++.|||.|+. ++......+.. .+.|=|........+.+.
T Consensus 70 T~ptv~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlk-tVfTdHSlfGfad~~si~-------------- 134 (426)
T KOG1111|consen 70 TFPTVFSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLK-TVFTDHSLFGFADIGSIL-------------- 134 (426)
T ss_pred chhhhhccCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCce-EEEeccccccccchhhhh--------------
Confidence 11223334556666666779999999976 23333344545 889988754322111111
Q ss_pred hHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCc
Q 039338 232 FNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNAS 311 (493)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~ 311 (493)
.. +.+ .-.+...|++||+|...++...=+-.+++.++.+|||.++...|.|++..+ +.++.
T Consensus 135 -----~n---~ll--~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~---------~S~~i 195 (426)
T KOG1111|consen 135 -----TN---KLL--PLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK---------PSADI 195 (426)
T ss_pred -----hc---cee--eeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc---------CCCCe
Confidence 11 111 123567899999999988765444467889999999999999999865532 34444
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC----cHHHHhh--hcCcEEEecCCCHHHHHHHHHHcCEE
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP----WEQRYKD--FGHQVLVMGSMSPAELRAFYNAIDIF 385 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~----~~~~~~~--l~~~V~~~g~~~~~~~~~~~~~adv~ 385 (493)
+.++.++|+...||+|.+++++.++.+++|+++++|+|+|| .++.+++ +.++|.++|.++++++.+.|.+-|+|
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IF 275 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIF 275 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEE
Confidence 88999999999999999999999999999999999999999 4444444 34999999999999999999999999
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 039338 386 VNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAA 465 (493)
Q Consensus 386 v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 465 (493)
++||.. |.|+++++||++||+|||+++.||++ |++-++ .-++-+++++++++++++.+...+. .-+...++++
T Consensus 276 lntSlT-Eafc~~ivEAaScGL~VVsTrVGGIp-eVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~----~p~~~h~~v~ 348 (426)
T KOG1111|consen 276 LNTSLT-EAFCMVIVEAASCGLPVVSTRVGGIP-EVLPED-MITLGEPGPDDLVGAVEKAITKLRT----LPLEFHDRVK 348 (426)
T ss_pred eccHHH-HHHHHHHHHHHhCCCEEEEeecCCcc-ccCCcc-ceeccCCChHHHHHHHHHHHHHhcc----CchhHHHHHH
Confidence 999975 99999999999999999999999999 776555 3333344899999999999876222 2355677888
Q ss_pred HhcCHHHHHHHHHHHHHHHhhccc
Q 039338 466 SMFTANKMALAYERLFLCIKNETF 489 (493)
Q Consensus 466 ~~fs~~~~~~~~~~~~~~i~~~~~ 489 (493)
+.|+|+..+++-+.+|.++.+.+.
T Consensus 349 ~~y~w~dVa~rTekvy~r~~~t~~ 372 (426)
T KOG1111|consen 349 KMYSWKDVAERTEKVYDRAATTSI 372 (426)
T ss_pred HhccHHHHHHHHHHHHHHHhhccC
Confidence 889999999999999999887653
No 49
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=8.8e-36 Score=292.31 Aligned_cols=361 Identities=27% Similarity=0.404 Sum_probs=270.4
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCC-CCCCCCCceEeecCCCCccccc
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDD-GSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
|+++++.||+. ..||++.++..++++|.+.||+|++++..... ........... ......................
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWG--PKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYL 77 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCC--CCchhhcccccccccccccCcchhhccccchhHH
Confidence 68899988752 47999999999999999999999999987665 21111100000 0000000000011111222333
Q ss_pred cchHHHHHHhc--CCCCcEEEeCccchhHH----hhh--ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHH
Q 039338 165 KGWEQFDEENQ--REPFDVVHSESVALPHW----LAR--NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSL 236 (493)
Q Consensus 165 ~~~~~~~~~~~--~~~~DiI~~~~~~~~~~----~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
.....+.+.++ ..++|+||++......+ +.+ ++| ++.+.|+......... ..
T Consensus 78 ~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~-------------------~~ 137 (377)
T cd03798 78 LAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIP-LVVTLHGSDVNLLPRK-------------------RL 137 (377)
T ss_pred HHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCC-EEEEeecchhcccCch-------------------hh
Confidence 44556666776 88999999986532222 222 236 8999998654321110 01
Q ss_pred HHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEE
Q 039338 237 QGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGV 316 (493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~ 316 (493)
... .+...++++|.++++|+..++.+.+.+ .+..++.+++||+|...+.+...... .+.+...+ ++.+++
T Consensus 138 ~~~-----~~~~~~~~~d~ii~~s~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~i~~ 207 (377)
T cd03798 138 LRA-----LLRRALRRADAVIAVSEALADELKALG-IDPEKVTVIPNGVDTERFSPADRAEA---RKLGLPED-KKVILF 207 (377)
T ss_pred HHH-----HHHHHHhcCCeEEeCCHHHHHHHHHhc-CCCCceEEcCCCcCcccCCCcchHHH---HhccCCCC-ceEEEE
Confidence 111 123567899999999999999998854 67789999999999987765433211 22333333 488999
Q ss_pred ecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 317 AGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 317 ~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
+|++.+.||++.+++++..+.+++++++++++|.++..+.++++ .++|.+.|+++++++.++|++||++++|+.
T Consensus 208 ~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~ 287 (377)
T cd03798 208 VGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL 287 (377)
T ss_pred eccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh
Confidence 99999999999999999999888889999999998776655443 378999999999999999999999999996
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
. |++|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++++ ++. +++.++++.+.+.|+
T Consensus 288 ~-~~~~~~~~Ea~~~G~pvI~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~--~~~~~~~~~~~~~~s 362 (377)
T cd03798 288 R-EGFGLVLLEAMACGLPVVATDVGGIP-EIITDGENGLLVPPGDPEALAEAILRLLAD-PWL--RLGRAARRRVAERFS 362 (377)
T ss_pred h-ccCChHHHHHHhcCCCEEEecCCChH-HHhcCCcceeEECCCCHHHHHHHHHHHhcC-cHH--HHhHHHHHHHHHHhh
Confidence 5 99999999999999999999999988 88899999999999 999999999999998 655 788899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 039338 470 ANKMALAYERLFLCI 484 (493)
Q Consensus 470 ~~~~~~~~~~~~~~i 484 (493)
|+.+++++.++|+++
T Consensus 363 ~~~~~~~~~~~~~~l 377 (377)
T cd03798 363 WENVAERLLELYREV 377 (377)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999764
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=6.8e-36 Score=295.10 Aligned_cols=365 Identities=23% Similarity=0.257 Sum_probs=261.2
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC-Ccc--
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA-DKW-- 161 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 161 (493)
||++++..+|+ ..||.+.++..++++|+++||+|++++..... ........ ..........+....... ...
T Consensus 1 kIl~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (394)
T cd03794 1 KILILSQYFPP--ELGGGAFRTTELAEELVKRGHEVTVITGSPNY--PSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGL 75 (394)
T ss_pred CEEEEecccCC--ccCCcceeHHHHHHHHHhCCceEEEEecCCCc--cccccccc-ceEEecCCeEEEEEecCCCCccch
Confidence 69999998876 44999999999999999999999999987654 11111000 000000111111111111 100
Q ss_pred -----ccccc-hHHHHHHh-cCCCCcEEEeCccc----hhHH-hhh--ccCcEEEEeccchhhhhhhhhhhhhhcCCCCc
Q 039338 162 -----RYSKG-WEQFDEEN-QREPFDVVHSESVA----LPHW-LAR--NVTNLAVSWHGIALESLQSGIFQDLTRKPLEP 227 (493)
Q Consensus 162 -----~~~~~-~~~~~~~~-~~~~~DiI~~~~~~----~~~~-~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 227 (493)
..... +....... +..+||+||+++.. .... ..+ +.| +++++|+.+.......... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~-----~~-- 147 (394)
T cd03794 76 LKRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAP-FVLEVRDLWPESAVALGLL-----KN-- 147 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCC-EEEEehhhcchhHHHccCc-----cc--
Confidence 01111 11112222 47799999999732 1111 122 346 8999998654332111000 00
Q ss_pred cchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCC
Q 039338 228 MSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIP 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~ 307 (493)
. ........+ .+...++.+|.++++|+...+.+. .++.+..++.++|||+|...+.+...... +......
T Consensus 148 --~---~~~~~~~~~--~~~~~~~~~d~vi~~s~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 217 (394)
T cd03794 148 --G---SLLYRLLRK--LERLIYRRADAIVVISPGMREYLV-RRGVPPEKISVIPNGVDLELFKPPPADES--LRKELGL 217 (394)
T ss_pred --c---chHHHHHHH--HHHHHHhcCCEEEEECHHHHHHHH-hcCCCcCceEEcCCCCCHHHcCCccchhh--hhhccCC
Confidence 0 000011111 133667899999999999999998 46778889999999999877655432211 2333333
Q ss_pred CCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh-----cCcEEEecCCCHHHHHHHHHHc
Q 039338 308 KNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF-----GHQVLVMGSMSPAELRAFYNAI 382 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l-----~~~V~~~g~~~~~~~~~~~~~a 382 (493)
.+ +++|+++|++.+.||++.+++++..+.+. ++++++++|+|+..+.++++ .++|.++|+++++++.++|+.|
T Consensus 218 ~~-~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 295 (394)
T cd03794 218 DD-KFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAA 295 (394)
T ss_pred CC-cEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhh
Confidence 33 48899999999999999999999999877 79999999998877666552 2789999999999999999999
Q ss_pred CEEEeCCCCCCC-----CChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHH
Q 039338 383 DIFVNPTLRPQG-----LDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQR 456 (493)
Q Consensus 383 dv~v~ps~~~eg-----~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~ 456 (493)
|++++|+.. |+ +|++++|||++|+|||+++.++.. +++.++++|+++++ |+++++++|.+++.+ ++.++++
T Consensus 296 di~i~~~~~-~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~ 372 (394)
T cd03794 296 DVGLVPLKP-GPAFEGVSPSKLFEYMAAGKPVLASVDGESA-ELVEEAGAGLVVPPGDPEALAAAILELLDD-PEERAEM 372 (394)
T ss_pred CeeEEeccC-cccccccCchHHHHHHHCCCcEEEecCCCch-hhhccCCcceEeCCCCHHHHHHHHHHHHhC-hHHHHHH
Confidence 999999964 54 488999999999999999999988 88888889999999 999999999999988 8999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHH
Q 039338 457 GEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 457 ~~~~~~~~~~~fs~~~~~~~~ 477 (493)
++++++++.++|+|+.++++|
T Consensus 373 ~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 373 GENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred HHHHHHHHHHhhcHHHHHHhc
Confidence 999999999889999999886
No 51
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.4e-35 Score=291.89 Aligned_cols=384 Identities=16% Similarity=0.095 Sum_probs=251.0
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCC--EEEEEecCCCCCCCCCCc----cccCCCC-CCCCCCceEee
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGH--RVHIFTSPVDNINSPSIS----HQENDDG-SNNKYPLLHFH 154 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~ 154 (493)
++++|++++++. ...||+|+.+...+.+|.+.|+ +|+++|...+. .. .+ ..+.... ......-++..
T Consensus 32 ~~~~v~f~HP~~---~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~--~~-~~~l~~~~~~~~i~~~~~~~~v~l~ 105 (463)
T PLN02949 32 RKRAVGFFHPYT---NDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDA--SP-DSLAARARDRFGVELLSPPKVVHLR 105 (463)
T ss_pred CCcEEEEECCCC---CCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCC--CH-HHHHHHHHhhcceecCCCceEEEec
Confidence 357899999864 3555999999999999999998 77777755333 11 11 0000000 00011111110
Q ss_pred cC---CCCccccccc-------hHHHHHHhcCCCCcEEEeCccc----hhHHhhhccCcEEEEeccchhhh-hhhhhhhh
Q 039338 155 EG---EADKWRYSKG-------WEQFDEENQREPFDVVHSESVA----LPHWLARNVTNLAVSWHGIALES-LQSGIFQD 219 (493)
Q Consensus 155 ~~---~~~~~~~~~~-------~~~~~~~~~~~~~DiI~~~~~~----~~~~~~~~~p~~v~~~h~~~~~~-~~~~~~~~ 219 (493)
.. .+..+..... .....+.+.+..|| |++.+.+ ++.+...+.| ++..+|.+.... +.......
T Consensus 106 ~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~-v~vDt~~~~~~~pl~~~~~~~-v~~yvH~p~~~~dm~~~v~~~ 183 (463)
T PLN02949 106 KRKWIEEETYPRFTMIGQSLGSVYLAWEALCKFTPL-YFFDTSGYAFTYPLARLFGCK-VVCYTHYPTISSDMISRVRDR 183 (463)
T ss_pred cccccccccCCceehHHHHHHHHHHHHHHHHhcCCC-EEEeCCCcccHHHHHHhcCCc-EEEEEeCCcchHHHHHHHhhc
Confidence 11 1111211111 11112222234555 5554432 2332222456 999999764332 11111100
Q ss_pred hhcCCCC--ccch---HhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCc
Q 039338 220 LTRKPLE--PMSL---AFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDL 294 (493)
Q Consensus 220 ~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~ 294 (493)
-....+. .... ...+.++......+ +....+.+|.++++|++.++.+.+.++. .+++.+++||+|.+.+...+
T Consensus 184 ~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l-~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~~ 261 (463)
T PLN02949 184 SSMYNNDASIARSFWLSTCKILYYRAFAWM-YGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQALP 261 (463)
T ss_pred ccccCccchhhccchhHHHHHHHHHHHHHH-HHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccCC
Confidence 0000000 0000 11112222222211 2234578999999999999999887664 35789999999876553211
Q ss_pred ccchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhh----CCCeEEEEEeCCCc---H---HHHhh----h
Q 039338 295 SLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVK----YPDVYLIVAGSGPW---E---QRYKD----F 360 (493)
Q Consensus 295 ~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~----~~~~~l~i~G~g~~---~---~~~~~----l 360 (493)
.. -+.++ ..++++||+.+.||++.+++|++++.++ .++++|+|+|+++. . +.+++ +
T Consensus 262 ~~---------~~~~~-~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l 331 (463)
T PLN02949 262 LE---------RSEDP-PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKEL 331 (463)
T ss_pred cc---------ccCCC-CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHc
Confidence 10 01222 5678999999999999999999988653 46899999998642 1 12222 2
Q ss_pred --cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeee---CcceEEECCCH
Q 039338 361 --GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD---DEFGFMFAPNV 435 (493)
Q Consensus 361 --~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~---~~~G~~~~~d~ 435 (493)
.++|.|+|+++.+++.++|+.||++++|+. .|+||++++|||++|+|||+++.||..+|++.+ +.+|++++ |+
T Consensus 332 ~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~-~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~-~~ 409 (463)
T PLN02949 332 GLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI-DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT-TV 409 (463)
T ss_pred CCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC-CH
Confidence 378999999999999999999999999995 599999999999999999999999875577765 56899886 99
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 436 ESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 436 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
++++++|.++++++++.+++|++++++.+++ |||+++++++.+.++++++..
T Consensus 410 ~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~-FS~e~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 410 EEYADAILEVLRMRETERLEIAAAARKRANR-FSEQRFNEDFKDAIRPILNSA 461 (463)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999996478889999999999955 999999999999999988753
No 52
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2.1e-35 Score=286.67 Aligned_cols=334 Identities=23% Similarity=0.281 Sum_probs=250.5
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC--CCccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE--ADKWR 162 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 162 (493)
||++++..+. ..||.++.+..++++|.+.||+|++++..... ........ .. .+...... .....
T Consensus 1 kI~i~~~~~~---~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~-------~~-~~~~~~~~~~~~~~~ 67 (348)
T cd03820 1 KILFVIPSLG---NAGGAERVLSNLANALAEKGHEVTIISLDKGE--PPFYELDP-------KI-KVIDLGDKRDSKLLA 67 (348)
T ss_pred CeEEEecccc---CCCChHHHHHHHHHHHHhCCCeEEEEecCCCC--CCccccCC-------cc-ceeecccccccchhc
Confidence 6899998763 27999999999999999999999999986653 11111110 11 11111110 01122
Q ss_pred cccchHHHHHHhcCCCCcEEEeCccc---hhHHhhhcc-CcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 163 YSKGWEQFDEENQREPFDVVHSESVA---LPHWLARNV-TNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~DiI~~~~~~---~~~~~~~~~-p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
.......+.+.+++.+||+||++... +...+.... | ++.+.|+........ ....
T Consensus 68 ~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~--------------------~~~~ 126 (348)
T cd03820 68 RFKKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVK-LIVSEHNSPDAYKKR--------------------LRRL 126 (348)
T ss_pred cccchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhcccc-EEEecCCCccchhhh--------------------hHHH
Confidence 33445667777778899999999864 222333333 5 888888753321100 0000
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
. .+...++.+|.++++|+..+... ...+..++.++|||++...+... ..+++..++++|
T Consensus 127 ~-----~~~~~~~~~d~ii~~s~~~~~~~---~~~~~~~~~vi~~~~~~~~~~~~-------------~~~~~~~i~~~g 185 (348)
T cd03820 127 L-----LRRLLYRRADAVVVLTEEDRALY---YKKFNKNVVVIPNPLPFPPEEPS-------------SDLKSKRILAVG 185 (348)
T ss_pred H-----HHHHHHhcCCEEEEeCHHHHHHh---hccCCCCeEEecCCcChhhcccc-------------CCCCCcEEEEEE
Confidence 0 23467889999999999998222 34467899999999998765433 012236788999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCC
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~ 392 (493)
++.+.||++.++++++.+.+..++++|+++|+++....++++ .++|.+.|. .+++.++|++||++++||..
T Consensus 186 ~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~- 262 (348)
T cd03820 186 RLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRF- 262 (348)
T ss_pred eeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccc-
Confidence 999999999999999999888899999999998877665542 278999998 48999999999999999965
Q ss_pred CCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHH
Q 039338 393 QGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTAN 471 (493)
Q Consensus 393 eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~ 471 (493)
||+|++++|||++|+|||+++.++..++++.++.+|+++++ |+++++++|.+++++ ++.++++++++++.+++ |+|+
T Consensus 263 e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~-~~~~~~~~~~~~~~~~~-~~~~ 340 (348)
T cd03820 263 EGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMED-EELRKRMGANARESAER-FSIE 340 (348)
T ss_pred cccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHH-hCHH
Confidence 99999999999999999999987665477777779999999 999999999999998 99999999999776654 9999
Q ss_pred HHHHHHH
Q 039338 472 KMALAYE 478 (493)
Q Consensus 472 ~~~~~~~ 478 (493)
+++++|.
T Consensus 341 ~~~~~~~ 347 (348)
T cd03820 341 NIIKQWE 347 (348)
T ss_pred HHHHHhc
Confidence 9999885
No 53
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.1e-36 Score=301.98 Aligned_cols=281 Identities=21% Similarity=0.286 Sum_probs=218.8
Q ss_pred CCCcEEEeCccchh---HHh---hhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhh
Q 039338 177 EPFDVVHSESVALP---HWL---ARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFF 250 (493)
Q Consensus 177 ~~~DiI~~~~~~~~---~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (493)
.++|+||+|+.... +.+ ..++| ++++.||........++.... .........+...+... +...+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p-~I~t~Hg~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~l--~~~~~ 242 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTP-FLLTEHGIYTRERKIELLQAD------WEMSYFRRLWIRFFESL--GRLAY 242 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCC-EEEecCCccHHHHHHHHHhcc------cchHHHHHHHHHHHHHH--HHHHH
Confidence 47899999976432 222 23457 999999975432221211110 00011111111222211 23668
Q ss_pred ccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHHHH
Q 039338 251 NKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLH 330 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll 330 (493)
+++|.|+++|+..++...+ +|.+.+++.+||||+|.+.|.+.... .. .+++++|+++||+.+.||++.++
T Consensus 243 ~~ad~Ii~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~--------~~-~~~~~~i~~vGrl~~~Kg~~~li 312 (475)
T cd03813 243 QAADRITTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA--------RP-EKEPPVVGLIGRVVPIKDIKTFI 312 (475)
T ss_pred HhCCEEEecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc--------cc-CCCCcEEEEEeccccccCHHHHH
Confidence 8999999999999987766 68888999999999999887654321 11 23347899999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEeCCCcH----HHHh----hh--cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHH
Q 039338 331 EAFSKLMVKYPDVYLIVAGSGPWE----QRYK----DF--GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLM 400 (493)
Q Consensus 331 ~a~~~l~~~~~~~~l~i~G~g~~~----~~~~----~l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~ 400 (493)
+|++.+.++.++++++|+|+++.. +.++ ++ .++|.|+| .+++.++|+++|++|+||. .||+|++++
T Consensus 313 ~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~-~Eg~p~~vl 388 (475)
T cd03813 313 RAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSI-SEGQPLVIL 388 (475)
T ss_pred HHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCch-hhcCChHHH
Confidence 999999988899999999987422 2222 22 37999999 3789999999999999996 599999999
Q ss_pred HHHHcCCcEEecCCCCCccceeee------CcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHH
Q 039338 401 EAMMSGKPVMASRFPSIKGTIVVD------DEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKM 473 (493)
Q Consensus 401 EAm~~G~PvI~s~~~~~~~e~v~~------~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 473 (493)
|||+||+|||+|+.|+.. |++.+ +.+|+++++ |+++++++|.++++| ++.++++++++++++++.|+|+++
T Consensus 389 EAma~G~PVVatd~g~~~-elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~-~~~~~~~~~~a~~~v~~~~s~~~~ 466 (475)
T cd03813 389 EAMAAGIPVVATDVGSCR-ELIEGADDEALGPAGEVVPPADPEALARAILRLLKD-PELRRAMGEAGRKRVERYYTLERM 466 (475)
T ss_pred HHHHcCCCEEECCCCChH-HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998 88888 569999999 999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHH
Q 039338 474 ALAYERLFL 482 (493)
Q Consensus 474 ~~~~~~~~~ 482 (493)
+++|.++|+
T Consensus 467 ~~~y~~lY~ 475 (475)
T cd03813 467 IDSYRRLYL 475 (475)
T ss_pred HHHHHHHhC
Confidence 999999984
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.2e-35 Score=286.66 Aligned_cols=341 Identities=23% Similarity=0.303 Sum_probs=256.2
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC---CCcc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE---ADKW 161 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 161 (493)
||++++.. .||.+.++..++++|.+.||+|++++..... ..... .....+...... ...+
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~~ 63 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDE--LEELE---------ALGVKVIPIPLDRRGINPF 63 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCc--ccccc---------cCCceEEeccccccccChH
Confidence 68999873 5899999999999999999999999987665 21000 111111111111 1222
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCccch--h-HHhh--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHH
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSESVAL--P-HWLA--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSL 236 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~~~~--~-~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
........+.+.+++.+||+||+++... . .... ...++++...|+.......... ....
T Consensus 64 ~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~ 127 (359)
T cd03808 64 KDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTSGGL----------------KRRL 127 (359)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhccchh----------------HHHH
Confidence 2233445566677788999999986421 1 1222 2335588888876433211100 0111
Q ss_pred HHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCC-CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEE
Q 039338 237 QGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIP-SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLG 315 (493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~-~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~ 315 (493)
...+ ++..++.+|.++++|+...+.+.+.+..+ ..++.++++|+|.+.+.+.... ..+++++|+
T Consensus 128 ~~~~-----~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~ 192 (359)
T cd03808 128 YLLL-----ERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP----------IPEDDPVFL 192 (359)
T ss_pred HHHH-----HHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc----------cCCCCcEEE
Confidence 2222 23556788999999999999998865433 4577888999998776554321 123347899
Q ss_pred EecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHh-----hh--cCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 316 VAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYK-----DF--GHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 316 ~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~-----~l--~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
++|++.+.||++.+++++..+.+++++++|+++|.++...... ++ .++|.+.|+. +++.++|++||++++|
T Consensus 193 ~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~i~p 270 (359)
T cd03808 193 FVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFR--DDVPELLAAADVFVLP 270 (359)
T ss_pred EEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeecc--ccHHHHHHhccEEEec
Confidence 9999999999999999999998878899999999987554332 22 2789999994 7999999999999999
Q ss_pred CCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 389 TLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 389 s~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
|.. ||+|++++|||++|+|||+++.++.. +++.++.+|+++++ |+++++++|.+++.+ ++.+.++++++++++.++
T Consensus 271 s~~-e~~~~~~~Ea~~~G~Pvi~s~~~~~~-~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~ 347 (359)
T cd03808 271 SYR-EGLPRVLLEAMAMGRPVIATDVPGCR-EAVIDGVNGFLVPPGDAEALADAIERLIED-PELRARMGQAARKRAEEE 347 (359)
T ss_pred Ccc-cCcchHHHHHHHcCCCEEEecCCCch-hhhhcCcceEEECCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHh
Confidence 965 99999999999999999999999998 88888999999998 899999999999998 899999999999999899
Q ss_pred cCHHHHHHHHH
Q 039338 468 FTANKMALAYE 478 (493)
Q Consensus 468 fs~~~~~~~~~ 478 (493)
|+|+.++++++
T Consensus 348 ~s~~~~~~~~~ 358 (359)
T cd03808 348 FDEEIVVKKLL 358 (359)
T ss_pred cCHHHHHHHhh
Confidence 99999999876
No 55
>PLN00142 sucrose synthase
Probab=100.00 E-value=1e-35 Score=302.97 Aligned_cols=382 Identities=16% Similarity=0.130 Sum_probs=249.9
Q ss_pred CCceEEEEEecc-C------CCCCCCCchHHHHHHHH--------HHHHhCCCEEE----EEecCCCCCCCCCCccccCC
Q 039338 81 KFTLKIAVFSRK-W------PISTTPGGMERHAHTLH--------VALARRGHRVH----IFTSPVDNINSPSISHQEND 141 (493)
Q Consensus 81 ~~~mkIl~v~~~-~------p~~~~~gG~~~~~~~l~--------~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~ 141 (493)
+.-|||++|+.+ | ...+..||...++..++ +.|+++||+|+ |+|....+ ..........
T Consensus 277 p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~--~~~~~~~~~~ 354 (815)
T PLN00142 277 PMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPD--AKGTTCNQRL 354 (815)
T ss_pred hHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCC--ccCCcccCcc
Confidence 345799999984 2 12346788888887544 67778899774 88875544 2111111100
Q ss_pred CCCCCCCCceEeecCCCCc--------cccccchH-------HHH-HHh--cCCCCcEEEeCcc--chhHHh---hhccC
Q 039338 142 DGSNNKYPLLHFHEGEADK--------WRYSKGWE-------QFD-EEN--QREPFDVVHSESV--ALPHWL---ARNVT 198 (493)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-------~~~-~~~--~~~~~DiI~~~~~--~~~~~~---~~~~p 198 (493)
. ...+....++.....+. ......|. .+. .+. ...+||+||.|.+ ++.+.. ..++|
T Consensus 355 e-~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP 433 (815)
T PLN00142 355 E-KVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVT 433 (815)
T ss_pred e-eccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCC
Confidence 0 11122223332211111 01111111 111 111 2346999999954 222222 23678
Q ss_pred cEEEEeccchhhhh-hhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHH-------HHHH
Q 039338 199 NLAVSWHGIALESL-QSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEM-------LRDV 270 (493)
Q Consensus 199 ~~v~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~-------~~~~ 270 (493)
.+.+.|...-... +++... ... ...+....++..|...+..||.||+.|...... +..+
T Consensus 434 -~v~T~HsL~k~K~~~~~~~~---~~~---------e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh 500 (815)
T PLN00142 434 -QCTIAHALEKTKYPDSDIYW---KKF---------DDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESH 500 (815)
T ss_pred -EEEEcccchhhhccccCCcc---ccc---------chhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcc
Confidence 9999996532111 111100 000 011111223334556778999999988766531 1111
Q ss_pred ------------hCC--CCCcEEEecCCccCCCccCCcccch-----------------hhhhhhCCC-CCCcEEEEEec
Q 039338 271 ------------YQI--PSERVHVILNGINENEYGVDLSLGQ-----------------SFRSRIGIP-KNASLVLGVAG 318 (493)
Q Consensus 271 ------------~~~--~~~~v~vi~ngvd~~~~~~~~~~~~-----------------~~r~~~~i~-~~~~~~i~~~G 318 (493)
.|+ ...++.+|++|+|...|.+...... ..++.+|+. +.++.+|+++|
T Consensus 501 ~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VG 580 (815)
T PLN00142 501 TAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMA 580 (815)
T ss_pred cccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEe
Confidence 122 2558999999999998865332111 123456652 23335788999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC------cHH------HHh----hh--cCcEEEecCC----CHHHHH
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP------WEQ------RYK----DF--GHQVLVMGSM----SPAELR 376 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~------~~~------~~~----~l--~~~V~~~g~~----~~~~~~ 376 (493)
|+.+.||++.+++|+.++.+..++++|+|+|+|. ..+ .+. ++ .++|.|+|.. +.+++.
T Consensus 581 RL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLy 660 (815)
T PLN00142 581 RLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELY 660 (815)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHH
Confidence 9999999999999999987776789999999862 111 111 22 2789999854 346777
Q ss_pred HHHH-HcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHH----HcCc
Q 039338 377 AFYN-AIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAV----SEGP 450 (493)
Q Consensus 377 ~~~~-~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll----~~~~ 450 (493)
.+++ ++|++|+||.+ |+||++++|||+||+|||+|+.||.+ |+|.++.+|+++++ |+++++++|.+++ .| +
T Consensus 661 r~iadaaDVfVlPS~~-EgFGLvvLEAMA~GlPVVATdvGG~~-EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~D-p 737 (815)
T PLN00142 661 RYIADTKGAFVQPALY-EAFGLTVVEAMTCGLPTFATCQGGPA-EIIVDGVSGFHIDPYHGDEAANKIADFFEKCKED-P 737 (815)
T ss_pred HHHHhhCCEEEeCCcc-cCCCHHHHHHHHcCCCEEEcCCCCHH-HHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCC-H
Confidence 7777 47999999964 99999999999999999999999998 99999999999999 9999999998765 56 8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 451 MRLAQRGEACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
+.+++|++++++++.++|||+.++++++++.
T Consensus 738 ~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 738 SYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 56
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=4.5e-35 Score=289.81 Aligned_cols=366 Identities=16% Similarity=0.114 Sum_probs=239.8
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCC--C-ccccCCCCCCCCCCc-eEee-c---
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTSPVDNINSPS--I-SHQENDDGSNNKYPL-LHFH-E--- 155 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~-~--- 155 (493)
|+|++++. ...||+|+.++..+.+|.+. ||+|+++|..... ... . ...+.......+... +... .
T Consensus 3 ~~f~hp~~---~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~--~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~ 77 (419)
T cd03806 3 VGFFHPYC---NAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDA--TPEEILEKVESRFNIELDRPRIVFFLLKYRKL 77 (419)
T ss_pred EEEECCCC---CCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCC--CHHHHHHHHHHhcCeecCCCceEEEEecceee
Confidence 77888754 34459999999999999998 8999999988655 210 0 000000001111111 2211 1
Q ss_pred CCCCccccccch-------HHHHHHhcCCCCcEEEeCc-cchhHHhh---hccCcEEEEeccchhhhhhhhhhhhhh-cC
Q 039338 156 GEADKWRYSKGW-------EQFDEENQREPFDVVHSES-VALPHWLA---RNVTNLAVSWHGIALESLQSGIFQDLT-RK 223 (493)
Q Consensus 156 ~~~~~~~~~~~~-------~~~~~~~~~~~~DiI~~~~-~~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~-~~ 223 (493)
.....+.....+ ....+.+.+.+|||++.+. .+....+. ...| ++..+|-+.... +...... +.
T Consensus 78 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~-~i~y~h~P~~~~---d~l~~~~~~~ 153 (419)
T cd03806 78 VEASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCP-VGAYVHYPTIST---DMLQKVRSRE 153 (419)
T ss_pred eccccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCe-EEEEecCCcchH---HHHHHHhhcc
Confidence 111111111111 1111222245899988886 33222222 2345 999999321110 1111100 00
Q ss_pred -----CC-Cccch--HhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcc
Q 039338 224 -----PL-EPMSL--AFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLS 295 (493)
Q Consensus 224 -----~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~ 295 (493)
.. ..... ...+.++..+...+ +...++.+|.++++|++.++.+.+.++. .+++.+|+||+|.+.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~k~~y~~~~~~~-~~~~~~~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~~ 231 (419)
T cd03806 154 ASYNNSATIARSPVLSKAKLLYYRLFAFL-YGLAGSFADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLPL 231 (419)
T ss_pred ccccCccchhccchHHHHHHHHHHHHHHH-HHHHhhcCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhccccc
Confidence 00 00000 11122222222222 3466889999999999999999887653 358999999999877654321
Q ss_pred cchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCC-----CeEEEEEeCCCc------HHHHhh----h
Q 039338 296 LGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYP-----DVYLIVAGSGPW------EQRYKD----F 360 (493)
Q Consensus 296 ~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~-----~~~l~i~G~g~~------~~~~~~----l 360 (493)
. ...++.+|+|+||+.+.||++.+++|+..+.+..+ +++|+|+|++.. .+.+++ +
T Consensus 232 ~----------~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l 301 (419)
T cd03806 232 D----------EKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKEL 301 (419)
T ss_pred c----------cccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHh
Confidence 0 11223688899999999999999999999988765 499999998642 222322 2
Q ss_pred --cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceee---eCcceEEECCCH
Q 039338 361 --GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVV---DDEFGFMFAPNV 435 (493)
Q Consensus 361 --~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~---~~~~G~~~~~d~ 435 (493)
.++|.|+|.++++++.++|+.||++++|+.. |+||++++|||+||+|||+++.||..++++. ++.+|++++ |+
T Consensus 302 ~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~-E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~-d~ 379 (419)
T cd03806 302 GLEDKVEFVVNAPFEELLEELSTASIGLHTMWN-EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS-TA 379 (419)
T ss_pred CCCCeEEEecCCCHHHHHHHHHhCeEEEECCcc-CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC-CH
Confidence 3799999999999999999999999999964 9999999999999999999998776547887 899999986 99
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHH
Q 039338 436 ESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMAL 475 (493)
Q Consensus 436 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 475 (493)
++++++|.++++++++.++.+ .++++.+.++||++++.+
T Consensus 380 ~~la~ai~~ll~~~~~~~~~~-~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 380 EEYAEAIEKILSLSEEERLRI-RRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHhhCHHHhcc
Confidence 999999999999844444445 555556777799998754
No 57
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=1.7e-34 Score=280.76 Aligned_cols=337 Identities=25% Similarity=0.304 Sum_probs=252.5
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||+++++.+ ..||+++++..++++|.+.||+|++++..... ........ ..................
T Consensus 1 kIl~~~~~~----~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 67 (353)
T cd03811 1 KILFVIPSL----GGGGAERVLLNLANGLDKRGYDVTLVVLRDEG--DYLELLPS-------NVKLIPVRVLKLKSLRDL 67 (353)
T ss_pred CeEEEeecc----cCCCcchhHHHHHHHHHhcCceEEEEEcCCCC--cccccccc-------chhhhceeeeecccccch
Confidence 689999876 36999999999999999999999999987655 21111100 000001111111222233
Q ss_pred cchHHHHHHhcCCCCcEEEeCcc-c--hhHHhhh--ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESV-A--LPHWLAR--NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~-~--~~~~~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
.....+.+.+++.+||+||++.. . +...+.. +.| ++.+.|+.......... ...
T Consensus 68 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~------------------~~~-- 126 (353)
T cd03811 68 LAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTK-LIVWEHNSLSLELKRKL------------------RLL-- 126 (353)
T ss_pred hHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCc-eEEEEcCcchhhhccch------------------hHH--
Confidence 34456677777889999999975 2 2222222 246 99999987543211100 000
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
..+...++++|.++++|+.+++.+.+.++.+..++.+++||+|...+........ ..+.+.+ +++|+++|+
T Consensus 127 ----~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~-~~~i~~~g~ 197 (353)
T cd03811 127 ----LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL----ELGIPPD-GPVILAVGR 197 (353)
T ss_pred ----HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh----hcCCCCC-ceEEEEEec
Confidence 2233668899999999999999999987766789999999999887765433211 2233334 488999999
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh----h--cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD----F--GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~----l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+.+.||++.+++++..+.+++++++|+++|.++..+.+++ + .++|.+.|++ +++.++|+.||++++||.. |
T Consensus 198 ~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~ps~~-e 274 (353)
T cd03811 198 LSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLFVLSSRY-E 274 (353)
T ss_pred chhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEEEeCccc-C
Confidence 9999999999999999998888999999999877665543 2 2789999997 5789999999999999965 9
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHH---HHHHHHHHHcCcHHHHHHHHHHHHHHHHhcC
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESL---HKTLEAAVSEGPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l---~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs 469 (493)
|+|++++|||++|+|||+++.++.. |++.++.+|+++++ |++++ .+++..+.++ ++.+.++++++++.+.++|+
T Consensus 275 ~~~~~~~Ea~~~G~PvI~~~~~~~~-e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 275 GFPNVLLEAMALGTPVVATDCPGPR-EILEDGENGLLVPVGDEAALAAAALALLDLLLD-PELRERLAAAARERVAREYS 352 (353)
T ss_pred CCCcHHHHHHHhCCCEEEcCCCChH-HHhcCCCceEEECCCCHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988 89999999999999 88888 7777788777 88888898888888887775
No 58
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=2.4e-33 Score=273.54 Aligned_cols=342 Identities=22% Similarity=0.218 Sum_probs=230.9
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC----Cc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA----DK 160 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 160 (493)
||++++..++ ..||+|+.+.+|++.|.+. +|..+...... ...... ............+ ..
T Consensus 1 ~i~~~~~~~~---~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~ 65 (351)
T cd03804 1 KVAIVHDWLV---NIGGGEKVVEALARLFPDA--DIFTLVDDPDK--LPRLLR--------LKKIRTSFIQKLPFARRRY 65 (351)
T ss_pred CEEEEEeccc---cCCCHHHHHHHHHHhCCCC--CEEEEeecCCc--cchhhc--------CCceeechhhhchhhHhhH
Confidence 6999998763 5699999999999998653 33333222222 110000 0000000000011 11
Q ss_pred cccccchHHHHHHhcCCCCcEEEeCccchhHHh--hhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 161 WRYSKGWEQFDEENQREPFDVVHSESVALPHWL--ARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~--~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
..+......+.+.+...++|+|++++......+ ....| .+..+|...... .+............. .........
T Consensus 66 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~-~~~~~h~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~ 141 (351)
T cd03804 66 RKYLPLMPLAIEQFDLSGYDLVISSSHAVAKGVITRPDQL-HICYCHTPMRYA--WDLYHDYLKESGLGK-RLALRLLLH 141 (351)
T ss_pred hhhCchhhHHHHhccccCCCEEEEcCcHHhccccCCCCCc-EEEEeCCchHHH--hcCchHhhhhcccch-hhHHHHHHH
Confidence 112222333444555678999999876443333 23445 677778642111 111111110000000 001111222
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
.+.+ .+.+.++++|.++++|+.+++.+.+.++ .+..+|+||+|.+.+.+.. ..+ ..++++|
T Consensus 142 ~~~~--~~~~~~~~~d~ii~~S~~~~~~~~~~~~---~~~~vi~~~~d~~~~~~~~-------------~~~-~~il~~G 202 (351)
T cd03804 142 YLRI--WDRRSAARVDYFIANSRFVARRIKKYYG---RDATVIYPPVDTDRFTPAE-------------EKE-DYYLSVG 202 (351)
T ss_pred HHHH--HHHHHhcCCCEEEECCHHHHHHHHHHhC---CCcEEECCCCCHhhcCcCC-------------CCC-CEEEEEE
Confidence 2222 2336689999999999999999988664 3568999999988775432 122 3477999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
++.+.||++.+++|++++ + ++|+++|+|+..+.+++. .++|.|+|+++++++.++|++||++++|| . |++|+
T Consensus 203 ~~~~~K~~~~li~a~~~~----~-~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps-~-e~~g~ 275 (351)
T cd03804 203 RLVPYKRIDLAIEAFNKL----G-KRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPA-E-EDFGI 275 (351)
T ss_pred cCccccChHHHHHHHHHC----C-CcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECC-c-CCCCc
Confidence 999999999999999887 3 789999999887766653 48999999999999999999999999999 4 99999
Q ss_pred HHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALA 476 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 476 (493)
+++|||+||+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++ ++ .+++++++.+++ |+|+++.++
T Consensus 276 ~~~Eama~G~Pvi~~~~~~~~-e~i~~~~~G~~~~~~~~~~la~~i~~l~~~-~~---~~~~~~~~~~~~-~~~~~~~~~ 349 (351)
T cd03804 276 VPVEAMASGTPVIAYGKGGAL-ETVIDGVTGILFEEQTVESLAAAVERFEKN-ED---FDPQAIRAHAER-FSESRFREK 349 (351)
T ss_pred hHHHHHHcCCCEEEeCCCCCc-ceeeCCCCEEEeCCCCHHHHHHHHHHHHhC-cc---cCHHHHHHHHHh-cCHHHHHHH
Confidence 999999999999999999988 89999999999998 999999999999998 53 233445555544 899999877
Q ss_pred H
Q 039338 477 Y 477 (493)
Q Consensus 477 ~ 477 (493)
+
T Consensus 350 ~ 350 (351)
T cd03804 350 I 350 (351)
T ss_pred h
Confidence 5
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=7.5e-33 Score=273.64 Aligned_cols=216 Identities=23% Similarity=0.326 Sum_probs=190.0
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChH
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHP 327 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~ 327 (493)
.+++++|.++++|+..++.+.+.++...+++.+++||++...+.... ..++++.|+++|++.+.||++
T Consensus 179 ~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~------------~~~~~~~il~~Grl~~~Kg~~ 246 (407)
T cd04946 179 YLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKP------------SKDDTLRIVSCSYLVPVKRVD 246 (407)
T ss_pred HHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCC------------CCCCCEEEEEeeccccccCHH
Confidence 34678999999999999999998888888999999999987654321 123348899999999999999
Q ss_pred HHHHHHHHHHhhCC--CeEEEEEeCCCcHHHHhhhc------CcEEEecCCCHHHHHHHHHH--cCEEEeCCCCCCCCCh
Q 039338 328 LLHEAFSKLMVKYP--DVYLIVAGSGPWEQRYKDFG------HQVLVMGSMSPAELRAFYNA--IDIFVNPTLRPQGLDL 397 (493)
Q Consensus 328 ~ll~a~~~l~~~~~--~~~l~i~G~g~~~~~~~~l~------~~V~~~g~~~~~~~~~~~~~--adv~v~ps~~~eg~~~ 397 (493)
.+++++.++.+++| +++++++|+|+..+.++++. ++|.|+|+++++++.++|+. +|++++||. .||+|+
T Consensus 247 ~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~-~Eg~p~ 325 (407)
T cd04946 247 LIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE-SEGLPV 325 (407)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc-cccccH
Confidence 99999999998875 56778899988776665432 67999999999999999986 788999996 599999
Q ss_pred HHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP--NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMAL 475 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 475 (493)
+++|||++|+|||+|+.||.+ |++.++.+|+++++ |+++++++|.++++| ++.+.+|++++++.++++|+++...+
T Consensus 326 ~llEAma~G~PVIas~vgg~~-e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~-~~~~~~m~~~ar~~~~~~f~~~~~~~ 403 (407)
T cd04946 326 SIMEAMSFGIPVIATNVGGTP-EIVDNGGNGLLLSKDPTPNELVSSLSKFIDN-EEEYQTMREKAREKWEENFNASKNYR 403 (407)
T ss_pred HHHHHHHcCCCEEeCCCCCcH-HHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcCHHHhHH
Confidence 999999999999999999998 89999989999986 799999999999998 89999999999999999999999988
Q ss_pred HHH
Q 039338 476 AYE 478 (493)
Q Consensus 476 ~~~ 478 (493)
++.
T Consensus 404 ~~~ 406 (407)
T cd04946 404 EFA 406 (407)
T ss_pred Hhc
Confidence 875
No 60
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=4.8e-32 Score=257.89 Aligned_cols=217 Identities=16% Similarity=0.206 Sum_probs=177.0
Q ss_pred hccCCeEEEcChhHHHHHHHHhCCC-CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHH
Q 039338 250 FNKYAHHVAISDSCGEMLRDVYQIP-SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPL 328 (493)
Q Consensus 250 ~~~~d~ii~~S~~~~~~~~~~~~~~-~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ 328 (493)
.+++|.++++|+.+++.+.+ .+++ .+++.+||||+|.+.|.+.... .+.+++++++|++.+.||++.
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~-~g~~~~~~i~vIpNGVd~~~f~~~~~~-----------~~~~~vl~~~g~~~~~Kg~d~ 159 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYT-SGLKIPQPIYVIPHNLNPRMFEYKPKE-----------KPHPCVLAILPHSWDRKGGDI 159 (331)
T ss_pred hccCCEEEECCHHHHHHHHH-cCCCCCCCEEEECCCCCHHHcCCCccc-----------cCCCEEEEEeccccccCCHHH
Confidence 46899999999999999987 4554 4689999999999877654221 123477888889999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCc
Q 039338 329 LHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP 408 (493)
Q Consensus 329 ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~P 408 (493)
+++|++.+.++.++++++++|++.....+..+. .+.|.++.+++.++|+.||++++||.. |+||++++|||+||+|
T Consensus 160 Li~A~~~l~~~~~~~~llivG~~~~~~~l~~~~---~~~~~v~~~~l~~~y~~aDv~v~pS~~-E~fgl~~lEAMA~G~P 235 (331)
T PHA01630 160 VVKIFHELQNEGYDFYFLIKSSNMLDPRLFGLN---GVKTPLPDDDIYSLFAGCDILFYPVRG-GAFEIPVIEALALGLD 235 (331)
T ss_pred HHHHHHHHHhhCCCEEEEEEeCcccchhhcccc---ceeccCCHHHHHHHHHhCCEEEECCcc-ccCChHHHHHHHcCCC
Confidence 999999999888899999999765544332221 135668999999999999999999964 9999999999999999
Q ss_pred EEecCCCCCccceeeeCcceEEE--------------------CCCHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHh
Q 039338 409 VMASRFPSIKGTIVVDDEFGFMF--------------------APNVESLHKTLEAAVSEG-PMRLAQRGEACRQYAASM 467 (493)
Q Consensus 409 vI~s~~~~~~~e~v~~~~~G~~~--------------------~~d~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~~ 467 (493)
||+|+.||.+ |++.++.+|+++ ++|.+++++++.+++.++ ++.++++..++.....++
T Consensus 236 VIas~~gg~~-E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (331)
T PHA01630 236 VVVTEKGAWS-EWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYREN 314 (331)
T ss_pred EEEeCCCCch-hhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999988 888888776665 447788999999999872 255555666666666777
Q ss_pred cCHHHHHHHHHHHHHH
Q 039338 468 FTANKMALAYERLFLC 483 (493)
Q Consensus 468 fs~~~~~~~~~~~~~~ 483 (493)
|||++++++++++|++
T Consensus 315 fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 315 YSYNAIAKMWEKILEK 330 (331)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999975
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=3e-32 Score=272.53 Aligned_cols=279 Identities=16% Similarity=0.195 Sum_probs=209.5
Q ss_pred chHHHHHHhcCCCCcEEEeCccchh--HHhh-h-ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHH
Q 039338 166 GWEQFDEENQREPFDVVHSESVALP--HWLA-R-NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVML 241 (493)
Q Consensus 166 ~~~~~~~~~~~~~~DiI~~~~~~~~--~~~~-~-~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (493)
....+.+.+...++||+|++..... ..+. . ..| .++.+|+-....... ..... .+.....
T Consensus 199 l~~~f~~~L~~~~~di~i~dr~~~~~~~~~~~~~~~~-~v~~lH~~h~~~~~~------------~~~~~---~~~~~y~ 262 (500)
T TIGR02918 199 LIAYFLKQLNLTKKDIIILDRSTGIGQAVLENKGPAK-LGVVVHAEHFSESAT------------NETYI---LWNNYYE 262 (500)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCcccchHHHhcCCCce-EEEEEChhhhcCccC------------cchhH---HHHHHHH
Confidence 3445545555678999999764322 1222 2 334 889999743211100 00000 0111111
Q ss_pred HHHHHHHhhccCCeEEEcChhHHHHHHHHhC---CCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 242 KVLNEIRFFNKYAHHVAISDSCGEMLRDVYQ---IPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 242 ~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~---~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
.. ....+.+|.++++|+..++.+.+.++ .+..++.+||||++...+.+.. ..++.+|+++|
T Consensus 263 ~~---~~~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~-------------~r~~~~il~vG 326 (500)
T TIGR02918 263 YQ---FSNADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ-------------ERKPFSIITAS 326 (500)
T ss_pred HH---HhchhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc-------------ccCCeEEEEEe
Confidence 11 13356789999999999888877553 3457899999998755433211 12236788999
Q ss_pred ccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCC
Q 039338 319 RLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 319 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~ 392 (493)
|+.+.||++.+++|+.++.++.|+++|+|+|+|+..+.++++ .++|.|+|+. ++.++|+.||++|+||. .
T Consensus 327 rl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~-~ 402 (500)
T TIGR02918 327 RLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSAST-S 402 (500)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCc-c
Confidence 999999999999999999998999999999999877666543 3789999975 68899999999999995 5
Q ss_pred CCCChHHHHHHHcCCcEEecCCC-CCccceeeeCcceEEECC-----C----HHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 039338 393 QGLDLTLMEAMMSGKPVMASRFP-SIKGTIVVDDEFGFMFAP-----N----VESLHKTLEAAVSEGPMRLAQRGEACRQ 462 (493)
Q Consensus 393 eg~~~~~~EAm~~G~PvI~s~~~-~~~~e~v~~~~~G~~~~~-----d----~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 462 (493)
||||++++|||+||+|||+++.+ |.+ |++.++.+|+++++ | +++|+++|.+++ + ++.+.+|++++++
T Consensus 403 Egfgl~~lEAma~G~PVI~~dv~~G~~-eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll-~-~~~~~~~~~~a~~ 479 (500)
T TIGR02918 403 EGFGLTLMEAVGSGLGMIGFDVNYGNP-TFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF-N-SNDIDAFHEYSYQ 479 (500)
T ss_pred ccccHHHHHHHHhCCCEEEecCCCCCH-HHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh-C-hHHHHHHHHHHHH
Confidence 99999999999999999999986 666 99999999999983 2 889999999999 4 4578999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHH
Q 039338 463 YAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 463 ~~~~~fs~~~~~~~~~~~~~~i 484 (493)
.+++ |||+.++++|.++++++
T Consensus 480 ~a~~-fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 480 IAEG-FLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHh-cCHHHHHHHHHHHHhhC
Confidence 8765 99999999999999864
No 62
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.3e-32 Score=263.65 Aligned_cols=308 Identities=16% Similarity=0.159 Sum_probs=207.6
Q ss_pred CchHHHHHHHHHHHHhCCC-EEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccch-----------
Q 039338 100 GGMERHAHTLHVALARRGH-RVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGW----------- 167 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (493)
+|.+.++..++..|+++|+ +|++++..... . ..+. .......++..............+
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~--~-~~~~------~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSE--P-IPAL------LNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAI 85 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCC--C-CHHH------hcCCcEEEEECCCcccccccccchHHHHHHHHHHH
Confidence 6667789999999999875 89999875543 1 1111 111112222222111111111111
Q ss_pred --HHHHHH--hcCCCCcEEEeCccch-----hHHh-h--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhH
Q 039338 168 --EQFDEE--NQREPFDVVHSESVAL-----PHWL-A--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKS 235 (493)
Q Consensus 168 --~~~~~~--~~~~~~DiI~~~~~~~-----~~~~-~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (493)
..+... .+..+||+||++++.. .+++ + .+.| ++.++|+.+........ ... .....
T Consensus 86 ~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~------~~~-----~~~~~ 153 (371)
T PLN02275 86 QFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAK-FVIDWHNFGYTLLALSL------GRS-----HPLVR 153 (371)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCC-EEEEcCCccHHHHhccc------CCC-----CHHHH
Confidence 111111 3467999999986431 1111 1 2446 88999987422111000 000 00011
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEE
Q 039338 236 LQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLG 315 (493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~ 315 (493)
+...+ ++.+++++|.++++|+.+++.+.+.+|++ +.+|+||. .+.|.+.... . .+..+.+.+++
T Consensus 154 ~~~~~-----e~~~~~~ad~ii~~S~~~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~-----~--~~~~~~~~~i~ 217 (371)
T PLN02275 154 LYRWY-----ERHYGKMADGHLCVTKAMQHELDQNWGIR---ATVLYDQP-PEFFRPASLE-----I--RLRPNRPALVV 217 (371)
T ss_pred HHHHH-----HHHHHhhCCEEEECCHHHHHHHHHhcCCC---eEEECCCC-HHHcCcCCch-----h--cccCCCcEEEE
Confidence 22222 34668899999999999999998866764 88999985 4555443221 0 11223346777
Q ss_pred EecccccccChHHHHHHHHHHH-----------------hhCCCeEEEEEeCCCcHHHHhhh----c-CcEEEec-CCCH
Q 039338 316 VAGRLVKDKGHPLLHEAFSKLM-----------------VKYPDVYLIVAGSGPWEQRYKDF----G-HQVLVMG-SMSP 372 (493)
Q Consensus 316 ~~Gr~~~~Kg~~~ll~a~~~l~-----------------~~~~~~~l~i~G~g~~~~~~~~l----~-~~V~~~g-~~~~ 372 (493)
++||+.++||++.+++|+..+. ++.++++|+++|+|+.++.++++ + +++.|.+ +++.
T Consensus 218 ~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~ 297 (371)
T PLN02275 218 SSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEA 297 (371)
T ss_pred EeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCH
Confidence 9999999999999999999874 23578999999999987766543 3 5688766 6899
Q ss_pred HHHHHHHHHcCEEEeCC--CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 373 AELRAFYNAIDIFVNPT--LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps--~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
+++..+|++||++|+|+ ..+|++|++++|||+||+|||+++.|+.+ |++.++.+|++++ |+++|+++|.+++
T Consensus 298 ~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~-eiv~~g~~G~lv~-~~~~la~~i~~l~ 371 (371)
T PLN02275 298 EDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG-ELVKDGKNGLLFS-SSSELADQLLELL 371 (371)
T ss_pred HHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH-HHccCCCCeEEEC-CHHHHHHHHHHhC
Confidence 99999999999999763 34588999999999999999999999988 9999999999998 8999999998764
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=4.6e-31 Score=247.56 Aligned_cols=306 Identities=17% Similarity=0.278 Sum_probs=219.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
||-++++..| +....+...+++.|++.|--|++++....- ......+.+.+..+...+
T Consensus 1 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~- 58 (335)
T PHA01633 1 MKTAILTMNY------SSISNVSEDIAEVLRENGEIVTITKNPFYI---------------PKAEKLIVFIPFHPPSLN- 58 (335)
T ss_pred CceEEEEech------hhhhhHHHHHHHHHHhCCcEEEEecCCccc---------------CccceEEEEeecCCcccc-
Confidence 7888898866 556677888999999998777776643322 111111222222211110
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccc-hhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHH
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVA-LPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLK 242 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~-~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (493)
.+- ...++....+ .+.++|+.... ++ ..
T Consensus 59 ----------------------~~~~~~~~~~~~~~-~~tt~~g~~~~----~~-----------------------y~- 87 (335)
T PHA01633 59 ----------------------PYLYAYYQFKGKKY-FYTTCDGIPNI----EI-----------------------VN- 87 (335)
T ss_pred ----------------------hHHhhhhhhcCCCc-eEEeeCCcCch----HH-----------------------HH-
Confidence 000 1112223334 88999986421 00 01
Q ss_pred HHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccccc
Q 039338 243 VLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVK 322 (493)
Q Consensus 243 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~ 322 (493)
+.+.+.+.++++|+..++.+.+ .|++.. + +|++|+|.+.|.+........+++++....+.++|+++||+.+
T Consensus 88 -----~~m~~~~~vIavS~~t~~~L~~-~G~~~~-i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~ 159 (335)
T PHA01633 88 -----KYLLQDVKFIPNSKFSAENLQE-VGLQVD-L-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTK 159 (335)
T ss_pred -----HHHhcCCEEEeCCHHHHHHHHH-hCCCCc-e-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCcc
Confidence 2334567899999999999987 577644 3 5789999998877554445677777654334478899999999
Q ss_pred ccChHHHHHHHHHHHhhCCC----eEEEEEeCCCcHHHHhh--hcCcEEEe---cCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 323 DKGHPLLHEAFSKLMVKYPD----VYLIVAGSGPWEQRYKD--FGHQVLVM---GSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 323 ~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~~~~~~~~--l~~~V~~~---g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+||++.+++|++++.++.++ ++++++|.+ .+++ +.++|.|. |+++++++.++|++||++|+||. .|
T Consensus 160 ~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~-~E 234 (335)
T PHA01633 160 RKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG-TE 234 (335)
T ss_pred ccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc-cc
Confidence 99999999999999887764 578888742 2333 44789998 56678999999999999999996 59
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceee------------------eCcceEEECC-CHHHHHHHHHHHHHcCcHHHH
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVV------------------DDEFGFMFAP-NVESLHKTLEAAVSEGPMRLA 454 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~------------------~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~ 454 (493)
|||++++|||+||+|||+++.++++ |++. +.+.|+.++. |+++++++|.++++. . ...
T Consensus 235 gfGlvlLEAMA~G~PVVas~~~~l~-Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~-~-~~~ 311 (335)
T PHA01633 235 GFGMPVLESMAMGTPVIHQLMPPLD-EFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFEL-Q-DRE 311 (335)
T ss_pred cCCHHHHHHHHcCCCEEEccCCCce-eecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhc-c-Chh
Confidence 9999999999999999999999887 6432 2345778888 999999999999776 3 234
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Q 039338 455 QRGEACRQYAASMFTANKMALAYER 479 (493)
Q Consensus 455 ~~~~~~~~~~~~~fs~~~~~~~~~~ 479 (493)
.++.++++.+++ |+|++++++|++
T Consensus 312 ~~~~~~~~~a~~-f~~~~~~~~~~~ 335 (335)
T PHA01633 312 ERSMKLKELAKK-YDIRNLYTRFLE 335 (335)
T ss_pred hhhHHHHHHHHh-cCHHHHHHHhhC
Confidence 446788887777 999999999863
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.1e-30 Score=257.16 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=233.5
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC-CCEEEEEecCCCCCCCCCCccccCCC---------------CCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARR-GHRVHIFTSPVDNINSPSISHQENDD---------------GSNN 146 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~---------------~~~~ 146 (493)
+-+|+|||.--. +...|....-+--|-+|++. |++|+++.+--.. .+...-..+.+. ..+.
T Consensus 322 ~r~~~ivTtAsl--PWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~-~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~ 398 (794)
T PLN02501 322 KRHVAIVTTASL--PWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCK-SDQELVYPNNLTFSSPEEQESYIRNWLEERI 398 (794)
T ss_pred CCeEEEEEcccC--cccccccccHHHHHHHhcccCCceEEEEEecCCc-cccccccCCCcccCCHHHHHHHHHHHHHHhc
Confidence 356999998432 26677766556667788887 7999999875443 111111111110 0001
Q ss_pred ---CCCceEeecCCC-CccccccchHHHHHHhcCCCCcEEEeCccchhHHh------hh-ccCcEEEEeccchhhhhhhh
Q 039338 147 ---KYPLLHFHEGEA-DKWRYSKGWEQFDEENQREPFDVVHSESVALPHWL------AR-NVTNLAVSWHGIALESLQSG 215 (493)
Q Consensus 147 ---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~------~~-~~p~~v~~~h~~~~~~~~~~ 215 (493)
....+.+.+... ...+-......+.+.+...+|||||++++....|. ++ .-| ++.++|.-...+....
T Consensus 399 g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~P-VVasyHTny~eYl~~y 477 (794)
T PLN02501 399 GFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNH-VVGVVHTNYLEYIKRE 477 (794)
T ss_pred CCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCC-eEEEEeCCcHHHHhHh
Confidence 111122211111 11112223456677777899999999987444333 22 226 8889997544321111
Q ss_pred hhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcc
Q 039338 216 IFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLS 295 (493)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~ 295 (493)
.. ......+.+.+.+++. +++ ||.++++|..+.+ + +...+..+ ||||.+.|.+...
T Consensus 478 --------~~----g~L~~~llk~l~~~v~--r~h--cD~VIaPS~atq~-L------~~~vI~nV-nGVDte~F~P~~r 533 (794)
T PLN02501 478 --------KN----GALQAFFVKHINNWVT--RAY--CHKVLRLSAATQD-L------PKSVICNV-HGVNPKFLKIGEK 533 (794)
T ss_pred --------cc----hhHHHHHHHHHHHHHH--Hhh--CCEEEcCCHHHHH-h------cccceeec-ccccccccCCcch
Confidence 00 0111222222222222 122 8999999977763 2 12222222 7999999887654
Q ss_pred cchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc----CcEEEecCCC
Q 039338 296 LGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG----HQVLVMGSMS 371 (493)
Q Consensus 296 ~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~----~~V~~~g~~~ 371 (493)
. ..+.+++++... ..++|+||+.+.||++.+++|++.+.++.++++|+|+|+|+..+.++++. -+|.|+|..
T Consensus 534 ~--~~~r~lgi~~~~-kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~- 609 (794)
T PLN02501 534 V--AEERELGQQAFS-KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGR- 609 (794)
T ss_pred h--HHHHhcCCcccc-CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCC-
Confidence 2 223566665433 24679999999999999999999998878899999999999887776543 458999987
Q ss_pred HHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcH
Q 039338 372 PAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPM 451 (493)
Q Consensus 372 ~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~ 451 (493)
++..++|+.+|++|+||.. |+||++++||||||+|||+++.++. +++.++.+|+++. |+++++++|.+++.+ +.
T Consensus 610 -dd~~~lyasaDVFVlPS~s-EgFGlVlLEAMA~GlPVVATd~pG~--e~V~~g~nGll~~-D~EafAeAI~~LLsd-~~ 683 (794)
T PLN02501 610 -DHADDSLHGYKVFINPSIS-DVLCTATAEALAMGKFVVCADHPSN--EFFRSFPNCLTYK-TSEDFVAKVKEALAN-EP 683 (794)
T ss_pred -CCHHHHHHhCCEEEECCCc-ccchHHHHHHHHcCCCEEEecCCCC--ceEeecCCeEecC-CHHHHHHHHHHHHhC-ch
Confidence 4566899999999999965 9999999999999999999999884 4577788888663 999999999999998 44
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 452 RLAQRGEACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 452 ~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
....+.. ...+||+.+++++++.=
T Consensus 684 ~rl~~~a------~~~~SWeAaadrLle~~ 707 (794)
T PLN02501 684 QPLTPEQ------RYNLSWEAATQRFMEYS 707 (794)
T ss_pred hhhHHHH------HhhCCHHHHHHHHHHhh
Confidence 3322221 22589999999998764
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.97 E-value=2.2e-29 Score=247.61 Aligned_cols=211 Identities=20% Similarity=0.289 Sum_probs=181.4
Q ss_pred hhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHH
Q 039338 249 FFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPL 328 (493)
Q Consensus 249 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ 328 (493)
.+.++|.++++|+..++.+.+.++. ..++.+||||++...+.+... ...++..++++||+.+.||++.
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~~~~-~~~v~~ip~g~~~~~~~~~~~-----------~~~~~~~i~~vgrl~~~K~~~~ 221 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQFGN-YNPIYTIPVGSIDPLKLPAQF-----------KQRKPHKIITVARLAPEKQLDQ 221 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHHhCC-CCceEEEcccccChhhcccch-----------hhcCCCeEEEEEccCcccCHHH
Confidence 3578999999999999999987764 345999999999876654310 1122367889999999999999
Q ss_pred HHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh------hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHH
Q 039338 329 LHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD------FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEA 402 (493)
Q Consensus 329 ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~------l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EA 402 (493)
+++++.++.+++|+++|+++|.|+....+++ +.++|.+.|+. +++.++|+.||++|+||. .||+|++++||
T Consensus 222 li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~-~Eg~~~~~lEA 298 (372)
T cd04949 222 LIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQ-SEGFGLSLMEA 298 (372)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEeccc-ccccChHHHHH
Confidence 9999999999999999999999876654443 23789999965 689999999999999996 59999999999
Q ss_pred HHcCCcEEecCCC-CCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 403 MMSGKPVMASRFP-SIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 403 m~~G~PvI~s~~~-~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
|++|+|||+++.+ |.. +++.++.+|+++++ |+++++++|.+++++ ++.+.++++++++.++ +|||++++++|
T Consensus 299 ma~G~PvI~~~~~~g~~-~~v~~~~~G~lv~~~d~~~la~~i~~ll~~-~~~~~~~~~~a~~~~~-~~s~~~~~~~w 372 (372)
T cd04949 299 LSHGLPVISYDVNYGPS-EIIEDGENGYLVPKGDIEALAEAIIELLND-PKLLQKFSEAAYENAE-RYSEENVWEKW 372 (372)
T ss_pred HhCCCCEEEecCCCCcH-HHcccCCCceEeCCCcHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHH-HhhHHHHHhcC
Confidence 9999999999987 555 89999999999999 999999999999999 8999999999999954 59999998864
No 66
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.9e-28 Score=236.54 Aligned_cols=394 Identities=20% Similarity=0.247 Sum_probs=265.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCC--C--------------CC-C
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDD--G--------------SN-N 146 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~--~--------------~~-~ 146 (493)
|||++++.+.-|....||.+..+..|.++|++.|++|.|+.+....+..........+. . .. .
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 89999999875557999999999999999999999999999877653333222211110 0 00 1
Q ss_pred CCCceEeecCCCCccc--------cc---cchHHH----HHHhcC----CCCcEEEeCccc---hhHHhhh------ccC
Q 039338 147 KYPLLHFHEGEADKWR--------YS---KGWEQF----DEENQR----EPFDVVHSESVA---LPHWLAR------NVT 198 (493)
Q Consensus 147 ~~~~~~~~~~~~~~~~--------~~---~~~~~~----~~~~~~----~~~DiI~~~~~~---~~~~~~~------~~p 198 (493)
......++. .+..+. +. ..+..+ .+.... ..|||||+|++. ++.++.. .+|
T Consensus 81 ~~v~~~lid-~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~ 159 (487)
T COG0297 81 GGVDLYLID-NPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIP 159 (487)
T ss_pred CCCcEEEec-ChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCC
Confidence 101222221 111111 11 011111 111111 469999999862 3334433 345
Q ss_pred cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHH-HHhC-----
Q 039338 199 NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLR-DVYQ----- 272 (493)
Q Consensus 199 ~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~-~~~~----- 272 (493)
.|.|+|...+..............|....... .+. .....--++..+..+|.+.++|+..++.+. ..+|
T Consensus 160 -tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~---~l~-~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g 234 (487)
T COG0297 160 -TVFTIHNLAYQGLFRLQYLEELGLPFEAYASF---GLE-FYGQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEG 234 (487)
T ss_pred -eEEEEeeceeecccchhhHHHhcCCHHHhhhc---eee-ecCcchhhhhhheeccEEEEECHHHHHhhccccccccchh
Confidence 99999987765544422222222221110000 000 000001122456789999999999988776 2221
Q ss_pred ---CCCCcEEEecCCccCCCccCCccc-----------------chhhhhhhCCCCC-CcEEEEEecccccccChHHHHH
Q 039338 273 ---IPSERVHVILNGINENEYGVDLSL-----------------GQSFRSRIGIPKN-ASLVLGVAGRLVKDKGHPLLHE 331 (493)
Q Consensus 273 ---~~~~~v~vi~ngvd~~~~~~~~~~-----------------~~~~r~~~~i~~~-~~~~i~~~Gr~~~~Kg~~~ll~ 331 (493)
.-..++.-|-||+|.+.+.|..+. +..+++++|++.+ +.+.++++||+..+||++.+++
T Consensus 235 ~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~ 314 (487)
T COG0297 235 LLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLE 314 (487)
T ss_pred hhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHH
Confidence 123678999999999988765442 3456678899854 3388999999999999999999
Q ss_pred HHHHHHhhCCCeEEEEEeCCC--cHHHHhhhc----CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHc
Q 039338 332 AFSKLMVKYPDVYLIVAGSGP--WEQRYKDFG----HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMS 405 (493)
Q Consensus 332 a~~~l~~~~~~~~l~i~G~g~--~~~~~~~l~----~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~ 405 (493)
++..+.++. +++++.|.|. +.+.+..+. .++.+.-..+..-...+|+.+|++++||. .|++|++-++||++
T Consensus 315 ~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSr-fEPcGL~ql~amry 391 (487)
T COG0297 315 AIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSR-FEPCGLTQLYAMRY 391 (487)
T ss_pred HHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCc-CcCCcHHHHHHHHc
Confidence 999999874 8999999982 223333332 56666666777888899999999999995 59999999999999
Q ss_pred CCcEEecCCCCCccceeee--------CcceEEECC-CHHHHHHHHHHHHHcC--cHH-HHHHHHHHHHHHHHhcCHHHH
Q 039338 406 GKPVMASRFPSIKGTIVVD--------DEFGFMFAP-NVESLHKTLEAAVSEG--PMR-LAQRGEACRQYAASMFTANKM 473 (493)
Q Consensus 406 G~PvI~s~~~~~~~e~v~~--------~~~G~~~~~-d~~~l~~~i~~ll~~~--~~~-~~~~~~~~~~~~~~~fs~~~~ 473 (493)
|+++|+..+||++ +.|.+ .++|++|.+ ++++++.+|.+.+.-. ++. .+.+..++ +..+|+|+..
T Consensus 392 GtvpIv~~tGGLa-dTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~---m~~d~sw~~s 467 (487)
T COG0297 392 GTLPIVRETGGLA-DTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNA---MGADFSWDLS 467 (487)
T ss_pred CCcceEcccCCcc-ceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhh---cccccCchhH
Confidence 9999999999999 55543 689999999 9999999999887642 222 44444443 3356999999
Q ss_pred HHHHHHHHHHHhhcccC
Q 039338 474 ALAYERLFLCIKNETFC 490 (493)
Q Consensus 474 ~~~~~~~~~~i~~~~~~ 490 (493)
+.+|.++|+.+++..+.
T Consensus 468 a~~y~~lY~~~~~~~~~ 484 (487)
T COG0297 468 AKEYVELYKPLLSKPFW 484 (487)
T ss_pred HHHHHHHHHHHhccccc
Confidence 99999999999887653
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=2.8e-28 Score=238.09 Aligned_cols=326 Identities=19% Similarity=0.146 Sum_probs=226.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC----C
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA----D 159 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 159 (493)
|||++++. ..||.++.+.+|+++|.++||+|++++..... .. .. .......++...... .
T Consensus 2 ~~i~i~~~------g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~--~~--~~------~~~~g~~~~~~~~~~~~~~~ 65 (357)
T PRK00726 2 KKILLAGG------GTGGHVFPALALAEELKKRGWEVLYLGTARGM--EA--RL------VPKAGIEFHFIPSGGLRRKG 65 (357)
T ss_pred cEEEEEcC------cchHhhhHHHHHHHHHHhCCCEEEEEECCCch--hh--hc------cccCCCcEEEEeccCcCCCC
Confidence 89999986 45899999999999999999999999875532 10 11 011111222222110 0
Q ss_pred -------ccccccchHHHHHHhcCCCCcEEEeCcc--chhHHh---hhccCcEEEEeccchhhhhhhhhhhhhhcCCCCc
Q 039338 160 -------KWRYSKGWEQFDEENQREPFDVVHSESV--ALPHWL---ARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEP 227 (493)
Q Consensus 160 -------~~~~~~~~~~~~~~~~~~~~DiI~~~~~--~~~~~~---~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 227 (493)
.......+..+.+.+++.+||+||+|+. .+..++ ..++| ++.+.|+.+.
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~~------------------ 126 (357)
T PRK00726 66 SLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIP-LVIHEQNAVP------------------ 126 (357)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCC-EEEEcCCCCc------------------
Confidence 1122344556667777889999999974 222222 23445 6665554210
Q ss_pred cchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCC
Q 039338 228 MSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIP 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~ 307 (493)
. .. .+..++.+|.+++.++... .+ .+..++++++||+|.+.+.+.. .+++++++
T Consensus 127 ------~----~~-----~r~~~~~~d~ii~~~~~~~---~~---~~~~~i~vi~n~v~~~~~~~~~-----~~~~~~~~ 180 (357)
T PRK00726 127 ------G----LA-----NKLLARFAKKVATAFPGAF---PE---FFKPKAVVTGNPVREEILALAA-----PPARLAGR 180 (357)
T ss_pred ------c----HH-----HHHHHHHhchheECchhhh---hc---cCCCCEEEECCCCChHhhcccc-----hhhhccCC
Confidence 0 01 1134567898998887442 12 4678999999999987654321 12345665
Q ss_pred CCCcEEEEEecccccccChHHHH-HHHHHHHhhCCCeEEEEEeCCCcHHHHhh--hcCcEEEecCCCHHHHHHHHHHcCE
Q 039338 308 KNASLVLGVAGRLVKDKGHPLLH-EAFSKLMVKYPDVYLIVAGSGPWEQRYKD--FGHQVLVMGSMSPAELRAFYNAIDI 384 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~~ll-~a~~~l~~~~~~~~l~i~G~g~~~~~~~~--l~~~V~~~g~~~~~~~~~~~~~adv 384 (493)
++. .+++++|+....|+...++ +|+.++.+. + ..++++|+|+.++..+. ++-+|.+.|++ +++.++|++||+
T Consensus 181 ~~~-~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~ 255 (357)
T PRK00726 181 EGK-PTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKGDLEEVRAAYAAGINAEVVPFI--DDMAAAYAAADL 255 (357)
T ss_pred CCC-eEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCCcHHHHHHHhhcCCcEEEeehH--hhHHHHHHhCCE
Confidence 555 5667888887778765555 999888654 3 56778899876544333 23349999998 799999999999
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc-------ceeeeCcceEEECC-C--HHHHHHHHHHHHHcCcHHHH
Q 039338 385 FVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG-------TIVVDDEFGFMFAP-N--VESLHKTLEAAVSEGPMRLA 454 (493)
Q Consensus 385 ~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~-------e~v~~~~~G~~~~~-d--~~~l~~~i~~ll~~~~~~~~ 454 (493)
++.++ | +.+++|||++|+|||++..++..+ +.+.+.++|+++++ | +++++++|.++++| ++.++
T Consensus 256 ~i~~~----g-~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~-~~~~~ 329 (357)
T PRK00726 256 VICRA----G-ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD-PERLE 329 (357)
T ss_pred EEECC----C-HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC-HHHHH
Confidence 99855 2 589999999999999997653221 45677889999987 6 99999999999999 99999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 455 QRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 455 ~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
+|++++++++++ ++.+.+++.+.++.+
T Consensus 330 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 330 AMAEAARALGKP-DAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHhcCCc-CHHHHHHHHHHHHhh
Confidence 999999998755 899999988887764
No 68
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.96 E-value=4.1e-27 Score=231.70 Aligned_cols=343 Identities=16% Similarity=0.135 Sum_probs=229.1
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCC--CCCCCCc-eEee---c
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDG--SNNKYPL-LHFH---E 155 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~---~ 155 (493)
+.|||++++..+ .+|+...+..++++|.++||+|++++...... .+.........+ .....+. +... .
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 76 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGES-HPVITEITKYLYLKSYTIGKELYRLFYYGV 76 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhc-chHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 468999999853 45999999999999999999977776554331 110010000000 0000000 0000 0
Q ss_pred CCC---Ccc--ccccchHHHHHHhcCCCCcEEEeCccchh--HHhh---hccCcEEEEeccchhhhhhhhhhhhhhcCCC
Q 039338 156 GEA---DKW--RYSKGWEQFDEENQREPFDVVHSESVALP--HWLA---RNVTNLAVSWHGIALESLQSGIFQDLTRKPL 225 (493)
Q Consensus 156 ~~~---~~~--~~~~~~~~~~~~~~~~~~DiI~~~~~~~~--~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~ 225 (493)
... ... ........+.+.+++.+||+||++.+... .+.. ..+| ++...+++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip-~~~~~td~~~~--------------- 140 (380)
T PRK13609 77 EKIYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIP-TYNVLTDFCLH--------------- 140 (380)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCC-eEEEeCCCCCC---------------
Confidence 000 000 01112356777778899999999865322 2211 1245 55444432100
Q ss_pred CccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhC
Q 039338 226 EPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIG 305 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~ 305 (493)
..++++++|.++++|+.+++.+.+ +|++.+++.+++++++...... . ....++++++
T Consensus 141 --------------------~~~~~~~ad~i~~~s~~~~~~l~~-~gi~~~ki~v~G~p~~~~f~~~-~-~~~~~~~~~~ 197 (380)
T PRK13609 141 --------------------KIWVHREVDRYFVATDHVKKVLVD-IGVPPEQVVETGIPIRSSFELK-I-NPDIIYNKYQ 197 (380)
T ss_pred --------------------cccccCCCCEEEECCHHHHHHHHH-cCCChhHEEEECcccChHHcCc-C-CHHHHHHHcC
Confidence 014567899999999999999988 6888889999877775432221 1 2345788999
Q ss_pred CCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeC-C-CcHHHHhhh----cCcEEEecCCCHHHHHHHH
Q 039338 306 IPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGS-G-PWEQRYKDF----GHQVLVMGSMSPAELRAFY 379 (493)
Q Consensus 306 i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-g-~~~~~~~~l----~~~V~~~g~~~~~~~~~~~ 379 (493)
+++++++++++.|++...|+++.+++++.+. ++++++++|+ + +..+.++++ .++|+|+|++ +++.++|
T Consensus 198 l~~~~~~il~~~G~~~~~k~~~~li~~l~~~----~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l~ 271 (380)
T PRK13609 198 LCPNKKILLIMAGAHGVLGNVKELCQSLMSV----PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDELF 271 (380)
T ss_pred CCCCCcEEEEEcCCCCCCcCHHHHHHHHhhC----CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHHH
Confidence 9888777787889998889999988887542 6789887743 3 234444433 3589999998 5789999
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC-CCCCcc---ceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHH
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR-FPSIKG---TIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLA 454 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~-~~~~~~---e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~ 454 (493)
+.||+++. ++.|++++|||++|+|||+++ .+|... +.+.+ .|..+.. |+++++++|.++++| ++.++
T Consensus 272 ~~aD~~v~-----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~~~~~~~~l~~~i~~ll~~-~~~~~ 343 (380)
T PRK13609 272 RVTSCMIT-----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAVVIRDDEEVFAKTEALLQD-DMKLL 343 (380)
T ss_pred HhccEEEe-----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEEEECCHHHHHHHHHHHHCC-HHHHH
Confidence 99999884 234789999999999999986 444321 12322 3444444 999999999999998 89999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 039338 455 QRGEACRQYAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 455 ~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i 484 (493)
+|++++++.... ++++++++.+.+++...
T Consensus 344 ~m~~~~~~~~~~-~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 344 QMKEAMKSLYLP-EPADHIVDDILAENHVE 372 (380)
T ss_pred HHHHHHHHhCCC-chHHHHHHHHHHhhhhh
Confidence 999999887655 79999999999887653
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.95 E-value=4.9e-26 Score=227.31 Aligned_cols=334 Identities=17% Similarity=0.116 Sum_probs=216.4
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEE--EecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhc
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHI--FTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQ 175 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (493)
...|-...+..|++.|.++++++.+ .+..... ...... . .... ..+.+.+.. ....+.+.++
T Consensus 58 ~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~--~~~~~~--~---~~~~-~~~~~~P~d--------~~~~~~~~l~ 121 (425)
T PRK05749 58 VSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG--SERAQA--L---FGDD-VEHRYLPYD--------LPGAVRRFLR 121 (425)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH--HHHHHH--h---cCCC-ceEEEecCC--------cHHHHHHHHH
Confidence 3355778899999999998766444 3222222 111100 0 0111 112222211 1245666677
Q ss_pred CCCCcEEEeCccc--h---hHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhh
Q 039338 176 REPFDVVHSESVA--L---PHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFF 250 (493)
Q Consensus 176 ~~~~DiI~~~~~~--~---~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (493)
+.+||+||++... . ......++| ++...|....... ..+..+.++ .+..+
T Consensus 122 ~~~Pd~v~~~~~~~~~~~l~~~~~~~ip-~vl~~~~~~~~s~----------------------~~~~~~~~~--~r~~~ 176 (425)
T PRK05749 122 FWRPKLVIIMETELWPNLIAELKRRGIP-LVLANARLSERSF----------------------KRYQKFKRF--YRLLF 176 (425)
T ss_pred hhCCCEEEEEecchhHHHHHHHHHCCCC-EEEEeccCChhhH----------------------HHHHHHHHH--HHHHH
Confidence 7899999987332 1 111223567 6655443321110 000111111 22567
Q ss_pred ccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCC-ccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHHH
Q 039338 251 NKYAHHVAISDSCGEMLRDVYQIPSERVHVILNG-INENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLL 329 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ng-vd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~l 329 (493)
+.+|.++++|+..++.+.+ +|++.+ +.+++|+ +|.............++++++ + ++ .+++++|+. .|+.+.+
T Consensus 177 ~~~d~ii~~S~~~~~~l~~-~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~-~-~~-~vil~~~~~--~~~~~~l 249 (425)
T PRK05749 177 KNIDLVLAQSEEDAERFLA-LGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLA-P-NR-PVWIAASTH--EGEEELV 249 (425)
T ss_pred HhCCEEEECCHHHHHHHHH-cCCCCC-cEecccccccCCCChhhHHHHHHHHHHhc-C-CC-cEEEEeCCC--chHHHHH
Confidence 7899999999999999987 687766 8899885 333221111122345666676 3 33 456677764 5789999
Q ss_pred HHHHHHHHhhCCCeEEEEEeCCCcH-HHHhhh----c-C--------------cEEEecCCCHHHHHHHHHHcCEEEe-C
Q 039338 330 HEAFSKLMVKYPDVYLIVAGSGPWE-QRYKDF----G-H--------------QVLVMGSMSPAELRAFYNAIDIFVN-P 388 (493)
Q Consensus 330 l~a~~~l~~~~~~~~l~i~G~g~~~-~~~~~l----~-~--------------~V~~~g~~~~~~~~~~~~~adv~v~-p 388 (493)
++|++++.+++|+++|+|+|+|+.+ +.++++ + . +|.+.+. .+++..+|+.||++++ +
T Consensus 250 l~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--~~el~~~y~~aDi~~v~~ 327 (425)
T PRK05749 250 LDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--MGELGLLYAIADIAFVGG 327 (425)
T ss_pred HHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--HHHHHHHHHhCCEEEECC
Confidence 9999999888899999999998865 444433 2 2 2333333 3699999999999666 5
Q ss_pred CCCCCCCChHHHHHHHcCCcEEecCC-CCCccceeeeC-cceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 039338 389 TLRPQGLDLTLMEAMMSGKPVMASRF-PSIKGTIVVDD-EFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAA 465 (493)
Q Consensus 389 s~~~eg~~~~~~EAm~~G~PvI~s~~-~~~~~e~v~~~-~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 465 (493)
|. .|++|.+++|||+||+|||+++. ++.. +++... .+|+++++ |+++|+++|.++++| ++.+++|++++++++.
T Consensus 328 S~-~e~~g~~~lEAma~G~PVI~g~~~~~~~-e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~-~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 328 SL-VKRGGHNPLEPAAFGVPVISGPHTFNFK-EIFERLLQAGAAIQVEDAEDLAKAVTYLLTD-PDARQAYGEAGVAFLK 404 (425)
T ss_pred Cc-CCCCCCCHHHHHHhCCCEEECCCccCHH-HHHHHHHHCCCeEEECCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 64 48899999999999999999865 3444 544432 45777777 999999999999998 9999999999999998
Q ss_pred HhcCHHHHHHHHHHHHHHHhhc
Q 039338 466 SMFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 466 ~~fs~~~~~~~~~~~~~~i~~~ 487 (493)
++ ...++++.+++.+.+++
T Consensus 405 ~~---~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 405 QN---QGALQRTLQLLEPYLPP 423 (425)
T ss_pred hC---ccHHHHHHHHHHHhccc
Confidence 75 36667777777766554
No 70
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.95 E-value=3.2e-26 Score=223.30 Aligned_cols=316 Identities=20% Similarity=0.185 Sum_probs=213.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC----CCc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE----ADK 160 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 160 (493)
||++.+. ..||..+++..++++|.++||||++++..... .. .. .......++..... ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~--~~--~~------~~~~~~~~~~~~~~~~~~~~~ 64 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGL--EA--RL------VPKAGIPLHTIPVGGLRRKGS 64 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcc--hh--hc------ccccCCceEEEEecCcCCCCh
Confidence 3666664 66899999999999999999999999876433 11 11 01111112222111 011
Q ss_pred -------cccccchHHHHHHhcCCCCcEEEeCccc--hhHH---hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCcc
Q 039338 161 -------WRYSKGWEQFDEENQREPFDVVHSESVA--LPHW---LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPM 228 (493)
Q Consensus 161 -------~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 228 (493)
+........+.+.+++.+||+||+++.. +... ...++| ++...|+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p-~v~~~~~~~~------------------- 124 (350)
T cd03785 65 LKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIP-LVIHEQNAVP------------------- 124 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCC-EEEEcCCCCc-------------------
Confidence 1112333456666778899999998642 2212 223446 5544333110
Q ss_pred chHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCC
Q 039338 229 SLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPK 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~ 308 (493)
... .+..++.+|.++++|+...+. .+..++.+++||+|.+.+.+.+ . ++++++++
T Consensus 125 ---------~~~-----~~~~~~~~~~vi~~s~~~~~~------~~~~~~~~i~n~v~~~~~~~~~----~-~~~~~~~~ 179 (350)
T cd03785 125 ---------GLA-----NRLLARFADRVALSFPETAKY------FPKDKAVVTGNPVREEILALDR----E-RARLGLRP 179 (350)
T ss_pred ---------cHH-----HHHHHHhhCEEEEcchhhhhc------CCCCcEEEECCCCchHHhhhhh----h-HHhcCCCC
Confidence 001 113345689999999988765 3567999999999987665422 1 67778877
Q ss_pred CCcEEEEEecccccccChH-HHHHHHHHHHhhCCCeE-EEEEeCCCcHHHHhh----hcCcEEEecCCCHHHHHHHHHHc
Q 039338 309 NASLVLGVAGRLVKDKGHP-LLHEAFSKLMVKYPDVY-LIVAGSGPWEQRYKD----FGHQVLVMGSMSPAELRAFYNAI 382 (493)
Q Consensus 309 ~~~~~i~~~Gr~~~~Kg~~-~ll~a~~~l~~~~~~~~-l~i~G~g~~~~~~~~----l~~~V~~~g~~~~~~~~~~~~~a 382 (493)
++ .++++.|+....|+.. .++++++.+.+ ++++ ++++|+| ..+.+++ +.++|.+.|++ +++.++|+.|
T Consensus 180 ~~-~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~~~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~a 253 (350)
T cd03785 180 GK-PTLLVFGGSQGARAINEAVPEALAELLR--KRLQVIHQTGKG-DLEEVKKAYEELGVNYEVFPFI--DDMAAAYAAA 253 (350)
T ss_pred CC-eEEEEECCcHhHHHHHHHHHHHHHHhhc--cCeEEEEEcCCc-cHHHHHHHHhccCCCeEEeehh--hhHHHHHHhc
Confidence 76 4555666655566665 45588888863 3566 4577887 3344433 23689999998 7999999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCC--------ccceeeeCcceEEECC---CHHHHHHHHHHHHHcCcH
Q 039338 383 DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSI--------KGTIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPM 451 (493)
Q Consensus 383 dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~--------~~e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~ 451 (493)
|++|.++ | +++++|||++|+|||+++.++. . +.+.+.++|+++++ |+++++++|.+++++ ++
T Consensus 254 d~~v~~s----g-~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~-~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~-~~ 326 (350)
T cd03785 254 DLVISRA----G-ASTVAELAALGLPAILIPLPYAADDHQTANA-RALVKAGAAVLIPQEELTPERLAAALLELLSD-PE 326 (350)
T ss_pred CEEEECC----C-HhHHHHHHHhCCCEEEeecCCCCCCcHHHhH-HHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC-HH
Confidence 9999755 2 5799999999999999876541 2 45666789999985 799999999999988 89
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHH
Q 039338 452 RLAQRGEACRQYAASMFTANKMAL 475 (493)
Q Consensus 452 ~~~~~~~~~~~~~~~~fs~~~~~~ 475 (493)
.+++|+++++++++. +..+++++
T Consensus 327 ~~~~~~~~~~~~~~~-~~~~~i~~ 349 (350)
T cd03785 327 RLKAMAEAARSLARP-DAAERIAD 349 (350)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHh
Confidence 999999999988764 66666654
No 71
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=4.3e-26 Score=224.07 Aligned_cols=347 Identities=12% Similarity=0.076 Sum_probs=231.0
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC---CEEEEEecCCCCCCCCCCcccc--CCCCCCCCCCceE-eec
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRG---HRVHIFTSPVDNINSPSISHQE--NDDGSNNKYPLLH-FHE 155 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~ 155 (493)
+-|||||++.. ..+|+...+..|.++|.+.| .+|.++-.-... .+.....- .+.......+.++ ...
T Consensus 4 ~~~~vlil~~~-----~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~~Y~~~~~~~p~~y~~~y 76 (391)
T PRK13608 4 QNKKILIITGS-----FGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEA--HPILTSICKKWYINSFKYFRNMYKGFY 76 (391)
T ss_pred CCceEEEEECC-----CCchHHHHHHHHHHHHHhhCCCCceEEEeehHHhc--CchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34789999975 45799999999999999875 456655332211 11111100 0000000001100 000
Q ss_pred -CCCCc----cccccchHHHHHHhcCCCCcEEEeCccchhHHhh-----hccCcEEEEeccchhhhhhhhhhhhhhcCCC
Q 039338 156 -GEADK----WRYSKGWEQFDEENQREPFDVVHSESVALPHWLA-----RNVTNLAVSWHGIALESLQSGIFQDLTRKPL 225 (493)
Q Consensus 156 -~~~~~----~~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~~-----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~ 225 (493)
..... +........+.+.+++.+||+|+++.+....... .++| ++...++... +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP-~~~v~td~~~---~------------ 140 (391)
T PRK13608 77 YSRPDKLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIP-VATVMTDYRL---H------------ 140 (391)
T ss_pred HcCchhhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCC-EEEEeCCCCc---c------------
Confidence 00000 0011123466777788999999997654322211 1446 5444443210 0
Q ss_pred CccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhC
Q 039338 226 EPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIG 305 (493)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~ 305 (493)
..++.+.+|.+++.|+.+++.+.+ .|++.+++.+++++++...... ......++++|
T Consensus 141 --------------------~~w~~~~~d~~~v~s~~~~~~l~~-~gi~~~ki~v~GiPv~~~f~~~--~~~~~~~~~~~ 197 (391)
T PRK13608 141 --------------------KNWITPYSTRYYVATKETKQDFID-VGIDPSTVKVTGIPIDNKFETP--IDQKQWLIDNN 197 (391)
T ss_pred --------------------cccccCCCCEEEECCHHHHHHHHH-cCCCHHHEEEECeecChHhccc--ccHHHHHHHcC
Confidence 013457899999999999999987 5888899999988887544322 22346778899
Q ss_pred CCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEE-eCCC-cHHHHhh-h--cCcEEEecCCCHHHHHHHHH
Q 039338 306 IPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVA-GSGP-WEQRYKD-F--GHQVLVMGSMSPAELRAFYN 380 (493)
Q Consensus 306 i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~-~~~~~~~-l--~~~V~~~g~~~~~~~~~~~~ 380 (493)
++++++.++++.|+++..||++.+++++. +..++++++++ |.+. ..+.+++ + .++|.++|++ +++.++|+
T Consensus 198 l~~~~~~ilv~~G~lg~~k~~~~li~~~~---~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~ 272 (391)
T PRK13608 198 LDPDKQTILMSAGAFGVSKGFDTMITDIL---AKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMA 272 (391)
T ss_pred CCCCCCEEEEECCCcccchhHHHHHHHHH---hcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHH
Confidence 98887777888999998899999999853 23367888665 5442 2233333 2 3689999998 68999999
Q ss_pred HcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCC-CCCcc---ceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHH
Q 039338 381 AIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRF-PSIKG---TIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQR 456 (493)
Q Consensus 381 ~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~-~~~~~---e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 456 (493)
+||++|.. +.|+++.|||++|+|+|+++. ++..+ .++.+.+.|+... |+++++++|.++++| ++.+++|
T Consensus 273 ~aDl~I~k-----~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~-~~~~l~~~i~~ll~~-~~~~~~m 345 (391)
T PRK13608 273 SSQLMITK-----PGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD-TPEEAIKIVASLTNG-NEQLTNM 345 (391)
T ss_pred hhhEEEeC-----CchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC-CHHHHHHHHHHHhcC-HHHHHHH
Confidence 99999962 347899999999999999963 33110 1334556676654 999999999999998 8999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 039338 457 GEACRQYAASMFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 457 ~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~ 487 (493)
++++++..+. ++++.+++.+.+++..+.+.
T Consensus 346 ~~~~~~~~~~-~s~~~i~~~l~~l~~~~~~~ 375 (391)
T PRK13608 346 ISTMEQDKIK-YATQTICRDLLDLIGHSSQP 375 (391)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHhhhhhhh
Confidence 9999998766 89999999999998875443
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.95 E-value=2.4e-26 Score=229.30 Aligned_cols=273 Identities=19% Similarity=0.210 Sum_probs=195.0
Q ss_pred CCcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhcc
Q 039338 178 PFDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNK 252 (493)
Q Consensus 178 ~~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (493)
..|+|++|++. ++..+.+..| ++++.+|-.++.. +++..+. ....+. +.+-.
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~---e~~~~lp--------------~~~~ll------~~~l~ 187 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSS---EIFRCLP--------------WREELL------RGLLG 187 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCCh---HHHhhCC--------------ChHHHH------HHHhc
Confidence 57999999873 3344443322 3888888654322 2221110 001111 22345
Q ss_pred CCeEEEcChhHHHHHHHH----hC------------CCCCcEEEecCCccCCCccCCccc---chhhhhhhCCCCCCcEE
Q 039338 253 YAHHVAISDSCGEMLRDV----YQ------------IPSERVHVILNGINENEYGVDLSL---GQSFRSRIGIPKNASLV 313 (493)
Q Consensus 253 ~d~ii~~S~~~~~~~~~~----~~------------~~~~~v~vi~ngvd~~~~~~~~~~---~~~~r~~~~i~~~~~~~ 313 (493)
+|.+.+.+......+.+. .+ -...++.++|||||.+.|.+.... ....++..+...++ .+
T Consensus 188 ~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~ 266 (460)
T cd03788 188 ADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGR-KL 266 (460)
T ss_pred CCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCC-EE
Confidence 888888886555444331 11 123468999999999988754322 12233334555555 67
Q ss_pred EEEecccccccChHHHHHHHHHHHhhCCC----eEEEEEeCC-----CcH----HHHhhh--------c----CcEE-Ee
Q 039338 314 LGVAGRLVKDKGHPLLHEAFSKLMVKYPD----VYLIVAGSG-----PWE----QRYKDF--------G----HQVL-VM 367 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g-----~~~----~~~~~l--------~----~~V~-~~ 367 (493)
|+++||+.+.||++.+++|+..+.+++|+ ++|+++|.+ +.. +.++++ + ..|. +.
T Consensus 267 il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~ 346 (460)
T cd03788 267 IVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLY 346 (460)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEe
Confidence 88999999999999999999999888775 678888643 222 222222 1 1344 45
Q ss_pred cCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCc----EEecCCCCCccceeeeCcceEEECC-CHHHHHHHH
Q 039338 368 GSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP----VMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTL 442 (493)
Q Consensus 368 g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~P----vI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i 442 (493)
|.++.+++.++|+.||++|+||.+ ||+|++++|||+||+| ||+|+.+|.. +. +.+|+++++ |+++++++|
T Consensus 347 g~v~~~el~~~y~~aDv~v~pS~~-Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~-~~---~~~g~lv~p~d~~~la~ai 421 (460)
T cd03788 347 RSLPREELAALYRAADVALVTPLR-DGMNLVAKEYVACQDDDPGVLILSEFAGAA-EE---LSGALLVNPYDIDEVADAI 421 (460)
T ss_pred CCCCHHHHHHHHHhccEEEeCccc-cccCcccceeEEEecCCCceEEEeccccch-hh---cCCCEEECCCCHHHHHHHH
Confidence 788999999999999999999976 9999999999999999 9999988877 33 568999999 999999999
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 039338 443 EAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERL 480 (493)
Q Consensus 443 ~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 480 (493)
.+++++++++++.+++++++.+.+ ||++..++++.+-
T Consensus 422 ~~~l~~~~~e~~~~~~~~~~~v~~-~~~~~w~~~~l~~ 458 (460)
T cd03788 422 HRALTMPLEERRERHRKLREYVRT-HDVQAWANSFLDD 458 (460)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHh
Confidence 999998678889999999999866 9999999988753
No 73
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.95 E-value=5.1e-26 Score=223.34 Aligned_cols=339 Identities=13% Similarity=0.133 Sum_probs=225.5
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhC-C--CEEEEEecCCCCCCCCCCcc--ccCCCCCCCCCCceE-eec--CC
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARR-G--HRVHIFTSPVDNINSPSISH--QENDDGSNNKYPLLH-FHE--GE 157 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G--~~V~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~--~~ 157 (493)
|||++.. ..||+...+..|.++|.++ | .+|.++-.-... .+.... ...+...... +.++ ... ..
T Consensus 1 ilils~~-----~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~Y~~~~~~-p~~~~~~y~~~~ 72 (382)
T PLN02605 1 VLILMSD-----TGGGHRASAEAIKDAFQLEFGDEYQVFIVDLWKEH--TPWPFNQLPRSYKFLVKH-PQLWKMTYHGTN 72 (382)
T ss_pred CEEEEEc-----CCcChHHHHHHHHHHHHhhcCCCeeEEEEehhhhc--CcchhhhHHHHHHHHhhC-HHHHHHHHHhcC
Confidence 5788874 5578999999999999864 4 456565433222 111100 0000000000 1000 000 00
Q ss_pred CCcc-c------cccchHHHHHHhcCCCCcEEEeCccc---hhHH-hh-------hccCcEEEEeccchhhhhhhhhhhh
Q 039338 158 ADKW-R------YSKGWEQFDEENQREPFDVVHSESVA---LPHW-LA-------RNVTNLAVSWHGIALESLQSGIFQD 219 (493)
Q Consensus 158 ~~~~-~------~~~~~~~~~~~~~~~~~DiI~~~~~~---~~~~-~~-------~~~p~~v~~~h~~~~~~~~~~~~~~ 219 (493)
.... . .......+.+.+++.+||+||++.+. .+.+ +. ..+| ++..++|+... +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p-~~~~~tD~~~~--~------ 143 (382)
T PLN02605 73 PRLIHQSYFAATSAFVAREVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIP-FTTVVTDLGTC--H------ 143 (382)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCC-EEEEECCCCCc--C------
Confidence 0000 0 01112456677788899999996543 1211 11 1345 66666654210 0
Q ss_pred hhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchh
Q 039338 220 LTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQS 299 (493)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~ 299 (493)
..++.+.+|.++++|+.+++.+.+ +|++.+++.+++++++.+.+.+. ..+..
T Consensus 144 --------------------------~~w~~~~~d~~~~~s~~~~~~l~~-~g~~~~ki~v~g~~v~~~f~~~~-~~~~~ 195 (382)
T PLN02605 144 --------------------------PTWFHKGVTRCFCPSEEVAKRALK-RGLEPSQIRVYGLPIRPSFARAV-RPKDE 195 (382)
T ss_pred --------------------------cccccCCCCEEEECCHHHHHHHHH-cCCCHHHEEEECcccCHhhccCC-CCHHH
Confidence 014567899999999999999887 58998999999999987654332 34567
Q ss_pred hhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHh----hCCCeE-EEEEeCCC-cHHHHhhh--cCcEEEecCCC
Q 039338 300 FRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMV----KYPDVY-LIVAGSGP-WEQRYKDF--GHQVLVMGSMS 371 (493)
Q Consensus 300 ~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~----~~~~~~-l~i~G~g~-~~~~~~~l--~~~V~~~g~~~ 371 (493)
+|+++|++++. .+|+++|+....|++..+++++..+.. ..++.+ ++++|+++ ..+.+++. ..+|.++|++
T Consensus 196 ~r~~~gl~~~~-~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~- 273 (382)
T PLN02605 196 LRRELGMDEDL-PAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFV- 273 (382)
T ss_pred HHHHcCCCCCC-cEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEecc-
Confidence 89999998877 667799998889999999999876531 124565 66778764 34455544 2579999999
Q ss_pred HHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCC------CCCccceeeeCcceEEECCCHHHHHHHHHHH
Q 039338 372 PAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRF------PSIKGTIVVDDEFGFMFAPNVESLHKTLEAA 445 (493)
Q Consensus 372 ~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~------~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~l 445 (493)
+++.++|++||++|.++ .|++++|||+||+|+|+++. ++. +.+.+++.|+.. .|+++++++|.++
T Consensus 274 -~~~~~l~~aaDv~V~~~-----g~~ti~EAma~g~PvI~~~~~pgqe~gn~--~~i~~~g~g~~~-~~~~~la~~i~~l 344 (382)
T PLN02605 274 -TNMEEWMGACDCIITKA-----GPGTIAEALIRGLPIILNGYIPGQEEGNV--PYVVDNGFGAFS-ESPKEIARIVAEW 344 (382)
T ss_pred -ccHHHHHHhCCEEEECC-----CcchHHHHHHcCCCEEEecCCCccchhhH--HHHHhCCceeec-CCHHHHHHHHHHH
Confidence 48999999999999754 26799999999999999984 222 234556677765 3999999999999
Q ss_pred HHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 446 VSEGPMRLAQRGEACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
+.++++.+++|++++++.... .+.+.+++.+.++.
T Consensus 345 l~~~~~~~~~m~~~~~~~~~~-~a~~~i~~~l~~~~ 379 (382)
T PLN02605 345 FGDKSDELEAMSENALKLARP-EAVFDIVHDLHELV 379 (382)
T ss_pred HcCCHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHh
Confidence 987577889999999998766 57788877776543
No 74
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.95 E-value=6.6e-25 Score=214.93 Aligned_cols=219 Identities=18% Similarity=0.166 Sum_probs=159.9
Q ss_pred HHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccC
Q 039338 246 EIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKG 325 (493)
Q Consensus 246 ~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg 325 (493)
+..+++++|.++++|+.+.+.+.+ ++ .++++|+||+|.+.|.+........+.. ...++++++|+|++.+.++
T Consensus 147 e~~~~~~ad~vi~~S~~l~~~~~~-~~---~~i~~i~ngvd~~~f~~~~~~~~~~~~~---~~~~~~~i~y~G~l~~~~d 219 (373)
T cd04950 147 ERRLLKRADLVFTTSPSLYEAKRR-LN---PNVVLVPNGVDYEHFAAARDPPPPPADL---AALPRPVIGYYGAIAEWLD 219 (373)
T ss_pred HHHHHHhCCEEEECCHHHHHHHhh-CC---CCEEEcccccCHHHhhcccccCCChhHH---hcCCCCEEEEEeccccccC
Confidence 457789999999999999998877 33 6899999999998886543221111111 1223378999999998777
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh--cCcEEEecCCCHHHHHHHHHHcCEEEeCCCC----CCCCChHH
Q 039338 326 HPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF--GHQVLVMGSMSPAELRAFYNAIDIFVNPTLR----PQGLDLTL 399 (493)
Q Consensus 326 ~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~----~eg~~~~~ 399 (493)
++.+.++.+ ..|+++|+++|.++......++ .+||+++|+++++++..+|+.+|++++|+.. .+++|+++
T Consensus 220 ~~ll~~la~----~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl 295 (373)
T cd04950 220 LELLEALAK----ARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKL 295 (373)
T ss_pred HHHHHHHHH----HCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchH
Confidence 765554443 3489999999987322222333 2899999999999999999999999999852 24689999
Q ss_pred HHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 039338 400 MEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYER 479 (493)
Q Consensus 400 ~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ 479 (493)
+|||+||+|||+++.+.. +...+.+++.+.|+++++++|.+++.++.....+ +.++ ..+.+||++.++++.+
T Consensus 296 ~EylA~G~PVVat~~~~~----~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~---~~~~-~~~~~sW~~~a~~~~~ 367 (373)
T cd04950 296 FEYLAAGKPVVATPLPEV----RRYEDEVVLIADDPEEFVAAIEKALLEDGPARER---RRLR-LAAQNSWDARAAEMLE 367 (373)
T ss_pred HHHhccCCCEEecCcHHH----HhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHH---HHHH-HHHHCCHHHHHHHHHH
Confidence 999999999999986544 3334445555449999999999987663332222 2222 4445999999999997
Q ss_pred HHHH
Q 039338 480 LFLC 483 (493)
Q Consensus 480 ~~~~ 483 (493)
.+.+
T Consensus 368 ~l~~ 371 (373)
T cd04950 368 ALQE 371 (373)
T ss_pred HHHh
Confidence 6654
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.95 E-value=1.6e-25 Score=218.08 Aligned_cols=316 Identities=17% Similarity=0.143 Sum_probs=203.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC----C
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA----D 159 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 159 (493)
|||++++. ..||.......|+++|.++||||++++..... .. .. .......++...... +
T Consensus 1 ~~i~~~~g------~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~--~~--~~------~~~~g~~~~~i~~~~~~~~~ 64 (348)
T TIGR01133 1 KKVVLAAG------GTGGHIFPALAVAEELIKRGVEVLWLGTKRGL--EK--RL------VPKAGIEFYFIPVGGLRRKG 64 (348)
T ss_pred CeEEEEeC------ccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcc--hh--cc------cccCCCceEEEeccCcCCCC
Confidence 78998886 45677777789999999999999999863322 10 11 011112222221111 1
Q ss_pred c-------cccccchHHHHHHhcCCCCcEEEeCccc--hhHHh-h--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCc
Q 039338 160 K-------WRYSKGWEQFDEENQREPFDVVHSESVA--LPHWL-A--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEP 227 (493)
Q Consensus 160 ~-------~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~-~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 227 (493)
. +........+.+.+++.+||+||+++.. +...+ + .++| ++...++...
T Consensus 65 ~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p-~v~~~~~~~~------------------ 125 (348)
T TIGR01133 65 SFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIP-LFHHEQNAVP------------------ 125 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCC-EEEECCCCCc------------------
Confidence 0 1122334456677788999999998642 22221 2 2345 5432222100
Q ss_pred cchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCC
Q 039338 228 MSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIP 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~ 307 (493)
... ++.+++.+|.++++|+.+.+.+ +..+++||++...+.+.. .+++++++
T Consensus 126 ----------~~~-----~~~~~~~~d~ii~~~~~~~~~~---------~~~~i~n~v~~~~~~~~~-----~~~~~~~~ 176 (348)
T TIGR01133 126 ----------GLT-----NKLLSRFAKKVLISFPGAKDHF---------EAVLVGNPVRQEIRSLPV-----PRERFGLR 176 (348)
T ss_pred ----------cHH-----HHHHHHHhCeeEECchhHhhcC---------CceEEcCCcCHHHhcccc-----hhhhcCCC
Confidence 001 1244567899999999876654 237999999876554321 13356777
Q ss_pred CCCcEEEEEecccccccChHH-HHHHHHHHHhhCCCeEEE-EEeCCCcHHHHhhhc--Cc-EEEecCCCHHHHHHHHHHc
Q 039338 308 KNASLVLGVAGRLVKDKGHPL-LHEAFSKLMVKYPDVYLI-VAGSGPWEQRYKDFG--HQ-VLVMGSMSPAELRAFYNAI 382 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~~-ll~a~~~l~~~~~~~~l~-i~G~g~~~~~~~~l~--~~-V~~~g~~~~~~~~~~~~~a 382 (493)
++. ++++++|+....|++.. +++++..+.+. +++++ ++|++.. +.+++.. .+ .....+.. .++.++|+.|
T Consensus 177 ~~~-~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~~~-~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~a 251 (348)
T TIGR01133 177 EGK-PTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKNDL-EKVKNVYQELGIEAIVTFID-ENMAAAYAAA 251 (348)
T ss_pred CCC-eEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcchH-HHHHHHHhhCCceEEecCcc-cCHHHHHHhC
Confidence 655 67788988777788654 55888888653 45554 4454433 4443321 11 12222333 3899999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc------ceeeeCcceEEECC-C--HHHHHHHHHHHHHcCcHHH
Q 039338 383 DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG------TIVVDDEFGFMFAP-N--VESLHKTLEAAVSEGPMRL 453 (493)
Q Consensus 383 dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~------e~v~~~~~G~~~~~-d--~~~l~~~i~~ll~~~~~~~ 453 (493)
|++|.++ | +++++|||++|+|+|+++.++..+ +++.++++|+++++ | +++++++|.++++| ++.+
T Consensus 252 d~~v~~~----g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~-~~~~ 325 (348)
T TIGR01133 252 DLVISRA----G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD-PANL 325 (348)
T ss_pred CEEEECC----C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC-HHHH
Confidence 9999754 3 689999999999999998755321 46778899999987 5 99999999999988 8999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHH
Q 039338 454 AQRGEACRQYAASMFTANKMAL 475 (493)
Q Consensus 454 ~~~~~~~~~~~~~~fs~~~~~~ 475 (493)
++|++++++++.+ ...+++++
T Consensus 326 ~~~~~~~~~~~~~-~~~~~i~~ 346 (348)
T TIGR01133 326 EAMAEAARKLAKP-DAAKRIAE 346 (348)
T ss_pred HHHHHHHHhcCCc-cHHHHHHh
Confidence 9999999887755 45555544
No 76
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.94 E-value=2.6e-25 Score=219.80 Aligned_cols=271 Identities=18% Similarity=0.200 Sum_probs=198.3
Q ss_pred CCcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhcc
Q 039338 178 PFDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNK 252 (493)
Q Consensus 178 ~~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (493)
.-|+|.+|++. ++.++....| ++...+|-+++. ++++..+. ..... .+-+-.
T Consensus 127 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~---~e~f~~lp-------------~r~~i-------l~gll~ 183 (456)
T TIGR02400 127 PGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPS---SEIYRTLP-------------WRREL-------LEGLLA 183 (456)
T ss_pred CCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCC---hHHHhhCC-------------cHHHH-------HHHHhc
Confidence 34899999874 4445554443 377788865432 22332221 11111 133557
Q ss_pred CCeEEEcChhHHHHHHHH----hCC-----------CCCcEEEecCCccCCCccCCccc------chhhhhhhCCCCCCc
Q 039338 253 YAHHVAISDSCGEMLRDV----YQI-----------PSERVHVILNGINENEYGVDLSL------GQSFRSRIGIPKNAS 311 (493)
Q Consensus 253 ~d~ii~~S~~~~~~~~~~----~~~-----------~~~~v~vi~ngvd~~~~~~~~~~------~~~~r~~~~i~~~~~ 311 (493)
+|.|-+.+....+.+... +|. ...++.++|||+|.+.|.+.... ...+|++++ ++
T Consensus 184 ~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~- 259 (456)
T TIGR02400 184 YDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLK---GR- 259 (456)
T ss_pred CCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcC---CC-
Confidence 899999998887766542 221 34568899999999988654322 123455552 33
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCC----eEEEEEe-----CCCcHH----HHhhh--------c-----CcEE
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPD----VYLIVAG-----SGPWEQ----RYKDF--------G-----HQVL 365 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G-----~g~~~~----~~~~l--------~-----~~V~ 365 (493)
.+|+++||+++.||++.+++|++++.+++|+ +.|+++| +++..+ .++++ + +-+.
T Consensus 260 ~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~ 339 (456)
T TIGR02400 260 KLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRY 339 (456)
T ss_pred eEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEE
Confidence 6788999999999999999999999888775 5577775 333322 22222 1 1234
Q ss_pred EecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCc----EEecCCCCCccceeeeCcceEEECC-CHHHHHH
Q 039338 366 VMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP----VMASRFPSIKGTIVVDDEFGFMFAP-NVESLHK 440 (493)
Q Consensus 366 ~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~P----vI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~ 440 (493)
+.|.++.+++.++|+.||++|+||.+ ||+|++++|||+||+| ||+|+.+|.. +.+. +|+++++ |++++++
T Consensus 340 l~~~~~~~el~aly~aaDv~vv~S~~-EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-~~l~---~gllVnP~d~~~lA~ 414 (456)
T TIGR02400 340 LNRSYDREELMALYRAADVGLVTPLR-DGMNLVAKEYVAAQDPKDGVLILSEFAGAA-QELN---GALLVNPYDIDGMAD 414 (456)
T ss_pred EcCCCCHHHHHHHHHhCcEEEECccc-cccCccHHHHHHhcCCCCceEEEeCCCCCh-HHhC---CcEEECCCCHHHHHH
Confidence 45688999999999999999999976 9999999999999999 9999988887 4442 7999999 9999999
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 441 TLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 441 ~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
+|.+++++++++++++.+++++++.+ ||+...++++.+-+
T Consensus 415 aI~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 415 AIARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 99999998788999999999999877 89999999987654
No 77
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.94 E-value=9.4e-25 Score=213.50 Aligned_cols=300 Identities=15% Similarity=0.179 Sum_probs=195.3
Q ss_pred CCCCcEEEeCccc--hhHHhhh----ccCcEEEEeccchhhhh-hhh---hhhhhhcCCCCccchHhHhHHHHHHHHHHH
Q 039338 176 REPFDVVHSESVA--LPHWLAR----NVTNLAVSWHGIALESL-QSG---IFQDLTRKPLEPMSLAFNKSLQGVMLKVLN 245 (493)
Q Consensus 176 ~~~~DiI~~~~~~--~~~~~~~----~~p~~v~~~h~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (493)
..++||+|+|.+. ......+ .+| .|.|.|....... +.. ++..+.....+.. ..-...-.+...
T Consensus 146 ~~~~dViH~HeWm~g~a~~~lK~~~~~Vp-tVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~e-----A~~~~I~~r~~i 219 (590)
T cd03793 146 DEPAVVAHFHEWQAGVGLPLLRKRKVDVS-TIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKE-----AGKRGIYHRYCI 219 (590)
T ss_pred CCCCeEEEEcchhHhHHHHHHHHhCCCCC-EEEEecccccccccccCCcccchhhhhcchhhh-----hhcccchHHHHH
Confidence 4689999999752 2222222 346 9999997543221 111 1111110000000 000111223334
Q ss_pred HHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCccc---------------chhhhhhhCCCCCC
Q 039338 246 EIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSL---------------GQSFRSRIGIPKNA 310 (493)
Q Consensus 246 ~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~---------------~~~~r~~~~i~~~~ 310 (493)
|+.....||.++++|+.+++.+...|+.++++ |||||+|.+.|.+..+. +..++..++++.++
T Consensus 220 E~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 220 ERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HHHHHhhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 56778899999999999999999999988776 99999999998765421 22356678887777
Q ss_pred cEEEEEeccccc-ccChHHHHHHHHHHHhh----CCCe---EEEEEeCC-----------Cc-----H------------
Q 039338 311 SLVLGVAGRLVK-DKGHPLLHEAFSKLMVK----YPDV---YLIVAGSG-----------PW-----E------------ 354 (493)
Q Consensus 311 ~~~i~~~Gr~~~-~Kg~~~ll~a~~~l~~~----~~~~---~l~i~G~g-----------~~-----~------------ 354 (493)
++++..+||+.. +||++.+++|+.+|... +.+. -|+++-.+ .. +
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 555544899998 99999999999998762 2322 23332111 00 0
Q ss_pred --------------H-----------------------------------------HHhhhc------Cc--EEEecCC-
Q 039338 355 --------------Q-----------------------------------------RYKDFG------HQ--VLVMGSM- 370 (493)
Q Consensus 355 --------------~-----------------------------------------~~~~l~------~~--V~~~g~~- 370 (493)
+ .+++++ ++ |+|++..
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 0 000000 22 4444321
Q ss_pred C------HHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCc---cceeeeC-cceEEEC-------C
Q 039338 371 S------PAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIK---GTIVVDD-EFGFMFA-------P 433 (493)
Q Consensus 371 ~------~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~---~e~v~~~-~~G~~~~-------~ 433 (493)
+ ..+..++|+.||++|+||.+ ||||++++|||+||+|||+|+.+|+. .|++.++ ..|+.+. +
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~y-E~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~ 536 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSYY-EPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPD 536 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEecccc-CCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchH
Confidence 1 23578899999999999976 99999999999999999999998883 1555444 3566665 3
Q ss_pred -CHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHhh
Q 039338 434 -NVESLHKTLEAAVSEGPMRLAQRGEACR-QYAASMFTANKMALAYERLFLCIKN 486 (493)
Q Consensus 434 -d~~~l~~~i~~ll~~~~~~~~~~~~~~~-~~~~~~fs~~~~~~~~~~~~~~i~~ 486 (493)
++++++++|.++++. +.++.+..+++ +...+.|+|++++..|.+.|+..+.
T Consensus 537 e~v~~La~~m~~~~~~--~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 537 ESVQQLTQYMYEFCQL--SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 678889999998854 45555555544 2334559999999999999987764
No 78
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.93 E-value=3.5e-24 Score=205.28 Aligned_cols=380 Identities=17% Similarity=0.145 Sum_probs=255.5
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHh---------CCCEEEEEecCCCCCCCCCCccc--cCCCCCCCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALAR---------RGHRVHIFTSPVDNINSPSISHQ--ENDDGSNNKY 148 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~---------~G~~V~v~~~~~~~~~~~~~~~~--~~~~~~~~~~ 148 (493)
.+..++++++.+.. ..||.++-....+-.+.. .||+|.+++........+..... ....+.....
T Consensus 31 ~~~~~~~~~~~~~~----~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~ 106 (495)
T KOG0853|consen 31 EKPFEHVTFIHPDL----GIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPIL 106 (495)
T ss_pred cccchhheeecccc----ccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceE
Confidence 34467899998864 779999999988888888 99999999987666211110000 0000000000
Q ss_pred CceEeecCCCCccc-----------cccchHHHHHHhcCCCCcEEEeCccchhHHhhhc------cCcEEEEeccchhhh
Q 039338 149 PLLHFHEGEADKWR-----------YSKGWEQFDEENQREPFDVVHSESVALPHWLARN------VTNLAVSWHGIALES 211 (493)
Q Consensus 149 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~~~~------~p~~v~~~h~~~~~~ 211 (493)
......+...+.+. .........+.. .+.|.|+........++.+. ++++.+..|......
T Consensus 107 vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~--~~~d~~i~d~~~~~~~l~~~~~~p~~~~~i~~~~h~~~~ll 184 (495)
T KOG0853|consen 107 VVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWA--EKVDPIIEDFVSACVPLLKQLSGPDVIIKIYFYCHFPDSLL 184 (495)
T ss_pred EEEeecCcccchhhhhhhccceeEEEEeccchhhhhh--hhhceeecchHHHHHHHHHHhcCCcccceeEEeccchHHHh
Confidence 01111111111000 000011111111 46788877765444433321 334666777654433
Q ss_pred hhhh-hhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHh-CCCCCcEEEecCCccCCC
Q 039338 212 LQSG-IFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVY-QIPSERVHVILNGINENE 289 (493)
Q Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~-~~~~~~v~vi~ngvd~~~ 289 (493)
.... +...+ ....+.+. +......++.+++.|...+..+...+ .++..++.+.+.++|.+.
T Consensus 185 a~r~g~~~~l---------------~~~~l~~~--e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~ 247 (495)
T KOG0853|consen 185 AKRLGVLKVL---------------YRHALDKI--EEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSW 247 (495)
T ss_pred ccccCcccee---------------ehhhhhhh--hhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceeeccccchh
Confidence 3222 11111 11112221 11345678899999999999888765 244455888899999877
Q ss_pred ccC-----CcccchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhC-----CCeEEEEEeCC-------C
Q 039338 290 YGV-----DLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKY-----PDVYLIVAGSG-------P 352 (493)
Q Consensus 290 ~~~-----~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~-----~~~~l~i~G~g-------~ 352 (493)
+.+ ....+...|...++...+ ..+..+.++.+.||++.+++++..+.... ++.++.++|+. .
T Consensus 248 ~~~~~~~~~~~~~~~~r~~~~v~~~d-~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~se 326 (495)
T KOG0853|consen 248 FTYGQYESHLELRLPVRLYRGVSGID-RFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSE 326 (495)
T ss_pred ccccccccchhcccccceeeeecccc-eEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchh
Confidence 664 223334455566666655 67779999999999999999999998876 56889999832 1
Q ss_pred cHHHHhh-------h---cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcccee
Q 039338 353 WEQRYKD-------F---GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIV 422 (493)
Q Consensus 353 ~~~~~~~-------l---~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v 422 (493)
...++++ . ++.|.|+...++.+...+++.+.+++..... |.||++++|||+||+|||+++.||.. |+|
T Consensus 327 n~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~-EiV 404 (495)
T KOG0853|consen 327 NVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNNGGPA-EIV 404 (495)
T ss_pred hHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecCCCce-EEE
Confidence 2222222 2 3778888988888887778888776653324 99999999999999999999999988 999
Q ss_pred eeCcceEEECCCHH---HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 039338 423 VDDEFGFMFAPNVE---SLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKN 486 (493)
Q Consensus 423 ~~~~~G~~~~~d~~---~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~ 486 (493)
.++.+|++++++.+ .+++++.++..| ++.+.+|+++++++++++|+|.++.+++.++..+...
T Consensus 405 ~~~~tG~l~dp~~e~~~~~a~~~~kl~~~-p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~~ 470 (495)
T KOG0853|consen 405 VHGVTGLLIDPGQEAVAELADALLKLRRD-PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYLQ 470 (495)
T ss_pred EcCCcceeeCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcCC
Confidence 99999999999655 699999999999 9999999999999999999999999999988876543
No 79
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.93 E-value=1.1e-24 Score=189.65 Aligned_cols=162 Identities=33% Similarity=0.611 Sum_probs=140.5
Q ss_pred hhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhh-CCCeEEEEEeCCCcHHHHhh------hcCcEEEecCC
Q 039338 298 QSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVK-YPDVYLIVAGSGPWEQRYKD------FGHQVLVMGSM 370 (493)
Q Consensus 298 ~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~-~~~~~l~i~G~g~~~~~~~~------l~~~V~~~g~~ 370 (493)
+..+.+.+.+.++ ++|+++|++.+.||++.+++++..+.++ .++++++|+|.+.....++. +.++|.|+|.+
T Consensus 3 ~~~~~~~~~~~~~-~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (172)
T PF00534_consen 3 DKLREKLKIPDKK-KIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYV 81 (172)
T ss_dssp HHHHHHTTT-TTS-EEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESH
T ss_pred HHHHHHcCCCCCC-eEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccc
Confidence 3456666666665 8889999999999999999999999874 68999999997766554443 23799999999
Q ss_pred CHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcC
Q 039338 371 SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEG 449 (493)
Q Consensus 371 ~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~ 449 (493)
+++++.++|+.||++++||.. |++|++++|||++|+|||+++.++.. |++.++.+|+++++ |+++++++|.+++++
T Consensus 82 ~~~~l~~~~~~~di~v~~s~~-e~~~~~~~Ea~~~g~pvI~~~~~~~~-e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~- 158 (172)
T PF00534_consen 82 PDDELDELYKSSDIFVSPSRN-EGFGLSLLEAMACGCPVIASDIGGNN-EIINDGVNGFLFDPNDIEELADAIEKLLND- 158 (172)
T ss_dssp SHHHHHHHHHHTSEEEE-BSS-BSS-HHHHHHHHTT-EEEEESSTHHH-HHSGTTTSEEEESTTSHHHHHHHHHHHHHH-
T ss_pred cccccccccccceeccccccc-cccccccccccccccceeeccccCCc-eeeccccceEEeCCCCHHHHHHHHHHHHCC-
Confidence 999999999999999999976 99999999999999999999998888 89999999999999 999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 039338 450 PMRLAQRGEACRQY 463 (493)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (493)
++.++.|+++++++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 89999999999875
No 80
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.92 E-value=1.5e-22 Score=194.66 Aligned_cols=283 Identities=15% Similarity=0.092 Sum_probs=196.2
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQRE 177 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (493)
...|+...-..+.+.+.+.|+++.-+...... ..........+..++...
T Consensus 13 ~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 62 (333)
T PRK09814 13 GNSAALKAKNDVTKIAKQLGFEELGIYFYNIK------------------------------RDSLSERSKRLDGILASL 62 (333)
T ss_pred ccchHHHHHHHHHHHHHHCCCeEeEEEecccc------------------------------cchHHHHHHHHHHHHhcC
Confidence 45566777888899999999987665432211 000111123344455556
Q ss_pred CC-cEEEeCccchhH------H--hhh--ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHH
Q 039338 178 PF-DVVHSESVALPH------W--LAR--NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNE 246 (493)
Q Consensus 178 ~~-DiI~~~~~~~~~------~--~~~--~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (493)
++ |+||++++.+.. + ..+ ++| ++..+|+.++..... . ... ...+
T Consensus 63 ~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k-~i~~ihD~~~~~~~~-----~-------------~~~------~~~~ 117 (333)
T PRK09814 63 KPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVK-IIILIHDIEPLRFDS-----N-------------YYL------MKEE 117 (333)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHHHHcCCE-EEEEECCcHHHhccc-----c-------------chh------hHHH
Confidence 77 999998764322 1 112 245 999999976532110 0 000 1124
Q ss_pred HHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccCh
Q 039338 247 IRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGH 326 (493)
Q Consensus 247 ~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~ 326 (493)
..+++++|.++++|+.+++.+.+ .|++..++.++++..+....... . .+.. ...|+|+|++....+
T Consensus 118 ~~~~~~aD~iI~~S~~~~~~l~~-~g~~~~~i~~~~~~~~~~~~~~~--------~---~~~~-~~~i~yaG~l~k~~~- 183 (333)
T PRK09814 118 IDMLNLADVLIVHSKKMKDRLVE-EGLTTDKIIVQGIFDYLNDIELV--------K---TPSF-QKKINFAGNLEKSPF- 183 (333)
T ss_pred HHHHHhCCEEEECCHHHHHHHHH-cCCCcCceEeccccccccccccc--------c---cccC-CceEEEecChhhchH-
Confidence 47788999999999999999987 58777788877765443211110 0 0122 257889999984322
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCC----------CCCCC
Q 039338 327 PLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLR----------PQGLD 396 (493)
Q Consensus 327 ~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~----------~eg~~ 396 (493)
+.+..++++|+++|+|+..+ ...++|.|.|+++++++..+|+. |+.+.+... ..++|
T Consensus 184 ---------l~~~~~~~~l~i~G~g~~~~---~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P 250 (333)
T PRK09814 184 ---------LKNWSQGIKLTVFGPNPEDL---ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNP 250 (333)
T ss_pred ---------HHhcCCCCeEEEECCCcccc---ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccch
Confidence 11123678999999988654 44589999999999999999998 766553311 14689
Q ss_pred hHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 397 LTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 397 ~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
.++.|+|+||+|||+++.++.. ++|.++++|++++ +.+++++++.++. .+.+.+|++++++.++..
T Consensus 251 ~K~~~ymA~G~PVI~~~~~~~~-~~V~~~~~G~~v~-~~~el~~~l~~~~---~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 251 HKLSLYLAAGLPVIVWSKAAIA-DFIVENGLGFVVD-SLEELPEIIDNIT---EEEYQEMVENVKKISKLL 316 (333)
T ss_pred HHHHHHHHCCCCEEECCCccHH-HHHHhCCceEEeC-CHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 9999999999998 7889999998852 567889999999988663
No 81
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.91 E-value=6.3e-23 Score=215.16 Aligned_cols=277 Identities=20% Similarity=0.205 Sum_probs=199.0
Q ss_pred CcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
-|+|.+|.+. ++.++.+..| ++...+|-+++. ++++..+. ..... .+-+-.|
T Consensus 148 ~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs---~e~fr~lp-------------~r~~i-------l~gll~a 204 (797)
T PLN03063 148 GDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPS---SEIYKTLP-------------SRSEL-------LRAVLTA 204 (797)
T ss_pred CCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCC---HHHHhhCC-------------CHHHH-------HHHHhcC
Confidence 3799999874 4455555443 377888876543 22333221 00111 1334467
Q ss_pred CeEEEcChhHHHHHHHH----hCC-----------CCCcEEEecCCccCCCccCCccc---c---hhhhhhhCCCCCCcE
Q 039338 254 AHHVAISDSCGEMLRDV----YQI-----------PSERVHVILNGINENEYGVDLSL---G---QSFRSRIGIPKNASL 312 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~----~~~-----------~~~~v~vi~ngvd~~~~~~~~~~---~---~~~r~~~~i~~~~~~ 312 (493)
|.|-+.+......+.+. .+. ...++.++|+|||.+.|.+.... . ..+++.++ ++ .
T Consensus 205 DligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~-~ 280 (797)
T PLN03063 205 DLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GR-K 280 (797)
T ss_pred CEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CC-e
Confidence 88888887777665541 121 22568899999999887653221 1 12333332 33 5
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeE----EEEEe-----CCCcHHH----Hhhhc----C--------cEE-E
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVY----LIVAG-----SGPWEQR----YKDFG----H--------QVL-V 366 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~----l~i~G-----~g~~~~~----~~~l~----~--------~V~-~ 366 (493)
+|+++||+++.||++.+++|++++.+++|+++ |+.++ +++..+. ++++. . .|. +
T Consensus 281 lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l 360 (797)
T PLN03063 281 VILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHL 360 (797)
T ss_pred EEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEe
Confidence 77799999999999999999999998888753 44333 2333222 22221 1 123 3
Q ss_pred ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCc----EEecCCCCCccceeeeCcceEEECC-CHHHHHHH
Q 039338 367 MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP----VMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKT 441 (493)
Q Consensus 367 ~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~P----vI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~ 441 (493)
.+.++.+++..+|+.||++|+||.+ ||+|++++|||+||+| +|+|+.+|.. +.+ +..|++++| |+++++++
T Consensus 361 ~~~v~~~el~aly~~ADvfvvtSlr-EGmnLv~lEamA~g~p~~gvlVlSe~~G~~-~~l--~~~allVnP~D~~~lA~A 436 (797)
T PLN03063 361 DCSVDFNYLCALYAITDVMLVTSLR-DGMNLVSYEFVACQKAKKGVLVLSEFAGAG-QSL--GAGALLVNPWNITEVSSA 436 (797)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCccc-cccCcchhhHheeecCCCCCEEeeCCcCch-hhh--cCCeEEECCCCHHHHHHH
Confidence 4578999999999999999999986 9999999999999999 9999999988 443 557999999 99999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 039338 442 LEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 442 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~ 487 (493)
|.+++..++++++++.++.++++.+ ++|...++.+.+.+++...+
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~-~~~~~Wa~~fl~~l~~~~~~ 481 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKT-HSAQKWADDFMSELNDIIVE 481 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHHHHHhhh
Confidence 9999997688888888999999988 79999999999988887643
No 82
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=4e-21 Score=171.55 Aligned_cols=376 Identities=15% Similarity=0.148 Sum_probs=245.5
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCC--CccccCCCCCCCCCCceEeecCCCCc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTSPVDNINSPS--ISHQENDDGSNNKYPLLHFHEGEADK 160 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (493)
.+++++++. ...||++++++.-.+.+++. .+...+++.+... .+. .........+..+...+.+...+...
T Consensus 45 tvgfFHPYC---NAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~--t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~ 119 (465)
T KOG1387|consen 45 TVGFFHPYC---NAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNV--TPENILNKVKNKFDIDLDSDNIFFIYLKLRY 119 (465)
T ss_pred EEEEecccc---cCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCC--CHHHHHHHHHHhcCceecccceEEEEEEeee
Confidence 488888765 57788899999999998876 3334444433222 111 00011111233344444444332221
Q ss_pred c------ccc--------cchHHHHHHhcCCCCcEEEeC-cc--chhHHh-hhccCcEEEEeccchhhhhhhhhhhhhhc
Q 039338 161 W------RYS--------KGWEQFDEENQREPFDVVHSE-SV--ALPHWL-ARNVTNLAVSWHGIALESLQSGIFQDLTR 222 (493)
Q Consensus 161 ~------~~~--------~~~~~~~~~~~~~~~DiI~~~-~~--~~~~~~-~~~~p~~v~~~h~~~~~~~~~~~~~~~~~ 222 (493)
+ ... .+...+. .+-+..|||.+-. ++ .++.+. .+++| ++...|-+...+ |....+..
T Consensus 120 lVea~~~~hfTllgQaigsmIl~~E-ai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~-V~aYvHYP~iS~---DML~~l~q 194 (465)
T KOG1387|consen 120 LVEASTWKHFTLLGQAIGSMILAFE-AIIRFPPDIFIDTMGYPFSYPIFRRLRRIP-VVAYVHYPTIST---DMLKKLFQ 194 (465)
T ss_pred eeecccccceehHHHHHHHHHHHHH-HHHhCCchheEecCCCcchhHHHHHHccCc-eEEEEecccccH---HHHHHHHh
Confidence 1 111 1112222 2337889987643 33 233333 34567 888888654332 33222222
Q ss_pred CCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhh
Q 039338 223 KPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRS 302 (493)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~ 302 (493)
.+... ...+.+..+.++...+ ....-..+|.+++.|.+..+.+.+.++. .++.+++++.+.+.+....
T Consensus 195 rq~s~-~l~~~KlaY~rlFa~l-Y~~~G~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~lks~~-------- 262 (465)
T KOG1387|consen 195 RQKSG-ILVWGKLAYWRLFALL-YQSAGSKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDLKSKF-------- 262 (465)
T ss_pred hhhcc-hhhhHHHHHHHHHHHH-HHhccccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHHHHHh--------
Confidence 11111 1111122222221111 1133467899999999999999998753 6888999988876443221
Q ss_pred hhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhh------CCCeEEEEEeCCC---cHHHHhhh---------cCcE
Q 039338 303 RIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVK------YPDVYLIVAGSGP---WEQRYKDF---------GHQV 364 (493)
Q Consensus 303 ~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~------~~~~~l~i~G~g~---~~~~~~~l---------~~~V 364 (493)
+-...+...++++|.+.|.|++. +++.++....+ .++++|+++|+.. +.++++.+ ..+|
T Consensus 263 --~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v 339 (465)
T KOG1387|consen 263 --GTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHV 339 (465)
T ss_pred --cccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccce
Confidence 11233447889999999999999 55444433322 3579999999743 23333322 2789
Q ss_pred EEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeee---CcceEEECCCHHHHHHH
Q 039338 365 LVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD---DEFGFMFAPNVESLHKT 441 (493)
Q Consensus 365 ~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~---~~~G~~~~~d~~~l~~~ 441 (493)
.|.-.+|.+++..+|..|.+.|+.- +.|.||+.+.||||+|+-+|+.+.||-.=++|.+ ..+|++.+ +.++.+++
T Consensus 340 ~F~~N~Py~~lv~lL~~a~iGvh~M-wNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~-t~~EYaE~ 417 (465)
T KOG1387|consen 340 QFEKNVPYEKLVELLGKATIGVHTM-WNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP-TDEEYAEA 417 (465)
T ss_pred EEEecCCHHHHHHHhccceeehhhh-hhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC-ChHHHHHH
Confidence 9999999999999999999999977 5699999999999999999999888865466664 35788886 88999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 442 LEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 442 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
+.+++..+.+.+..|++++|..+.+ |+..++.+.+...+..++.+.
T Consensus 418 iLkIv~~~~~~r~~~r~~AR~s~~R-FsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 418 ILKIVKLNYDERNMMRRNARKSLAR-FGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHH-hhHHHHHHhHhHHHHHhhccc
Confidence 9999998788899999999988876 999999999999999888764
No 83
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.91 E-value=2.8e-22 Score=182.72 Aligned_cols=216 Identities=29% Similarity=0.365 Sum_probs=159.9
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccccc
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSK 165 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (493)
|++++..+++ ..||.+++...+++.|+++||+|+++. .
T Consensus 1 i~~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~v~~----------------------------------------~ 38 (229)
T cd01635 1 ILLVSTPLLP--GGGGVELVLLDLAKALARRGHEVEVVA----------------------------------------L 38 (229)
T ss_pred CeeeccccCC--CCCCchhHHHHHHHHHHHcCCeEEEEE----------------------------------------e
Confidence 4677776543 579999999999999999999999998 1
Q ss_pred chHHHHHHhcCCCCcEEEeCccchhHH------hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 166 GWEQFDEENQREPFDVVHSESVALPHW------LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 166 ~~~~~~~~~~~~~~DiI~~~~~~~~~~------~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
....+...+++.+||+||+++.....+ .....| ++.+.|+.+........
T Consensus 39 ~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~----------------------- 94 (229)
T cd01635 39 LLLLLLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIP-LVLTVHGVNRSLLEGVP----------------------- 94 (229)
T ss_pred chHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCC-EEEEEcCccHhhcccCc-----------------------
Confidence 123344444467999999998643332 223445 89999987543211000
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
. ..+..... . ....++|+
T Consensus 95 -----------------~-------~~~~~~~~-----------------------------------~---~~~~~~g~ 112 (229)
T cd01635 95 -----------------L-------SLLALSIG-----------------------------------L---ADKVFVGR 112 (229)
T ss_pred -----------------H-------HHHHHHHh-----------------------------------h---cceEEEEe
Confidence 0 00000000 0 00118999
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh------hcCcEEEecCC-CHHHHHHHHHHcCEEEeCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD------FGHQVLVMGSM-SPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~------l~~~V~~~g~~-~~~~~~~~~~~adv~v~ps~~~ 392 (493)
+.+.||++.+++++..+.++.++++++++|.+......++ ..++|.+.|++ +.+++..+++.||+++.|+..
T Consensus 113 ~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~- 191 (229)
T cd01635 113 LAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLR- 191 (229)
T ss_pred ecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccc-
Confidence 9999999999999999998889999999999876665442 23899999998 445666666669999999964
Q ss_pred CCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEE
Q 039338 393 QGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMF 431 (493)
Q Consensus 393 eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~ 431 (493)
|++|++++|||++|+|||+++.++.. |++.++++|+++
T Consensus 192 e~~~~~~~Eam~~g~pvi~s~~~~~~-e~i~~~~~g~~~ 229 (229)
T cd01635 192 EGFGLVVLEAMACGLPVIATDVGGPP-EIVEDGLTGLLV 229 (229)
T ss_pred cCcChHHHHHHhCCCCEEEcCCCCcc-eEEECCCceEEC
Confidence 89999999999999999999999998 888889999874
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.90 E-value=9e-23 Score=199.68 Aligned_cols=345 Identities=12% Similarity=0.104 Sum_probs=215.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC-CCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCC---
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARR-GHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEAD--- 159 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 159 (493)
|||++++..=| . -..+..+.++|.+. ++++.++.+..+. ....+..+. .... ..+.......+
T Consensus 1 ~~i~~~~gtr~------~-~~~~~p~~~~l~~~~~~~~~~~~tg~h~--~~~~~~~~~---~~i~-~~~~~~~~~~~~~~ 67 (365)
T TIGR00236 1 LKVSIVLGTRP------E-AIKMAPLIRALKKYPEIDSYVIVTAQHR--EMLDQVLDL---FHLP-PDYDLNIMSPGQTL 67 (365)
T ss_pred CeEEEEEecCH------H-HHHHHHHHHHHhhCCCCCEEEEEeCCCH--HHHHHHHHh---cCCC-CCeeeecCCCCCCH
Confidence 79999987422 2 22477899999886 6777777765543 111111111 1111 11222211111
Q ss_pred ccccccchHHHHHHhcCCCCcEEEeCccc---hhH---HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhH
Q 039338 160 KWRYSKGWEQFDEENQREPFDVVHSESVA---LPH---WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFN 233 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~DiI~~~~~~---~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
..........+.+.+++.+||+||+|+.. +.+ ....++| ++..-+|.... +.+. ..+
T Consensus 68 ~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ip-v~h~~~g~~s~----~~~~---~~~--------- 130 (365)
T TIGR00236 68 GEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIP-VGHVEAGLRTG----DRYS---PMP--------- 130 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCC-EEEEeCCCCcC----CCCC---CCc---------
Confidence 11223345667777788999999999642 222 2334567 65544432100 0000 000
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCc-cCCCccCCcccchhhhhhhCCCCCCcE
Q 039338 234 KSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGI-NENEYGVDLSLGQSFRSRIGIPKNASL 312 (493)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngv-d~~~~~~~~~~~~~~r~~~~i~~~~~~ 312 (493)
... .+. ...+.+|.++++|+..++.+.+ .|++++++.+++||+ |...+.........++++++. ++++
T Consensus 131 ~~~----~r~----~~~~~ad~~~~~s~~~~~~l~~-~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~ 199 (365)
T TIGR00236 131 EEI----NRQ----LTGHIADLHFAPTEQAKDNLLR-ENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE--DKRY 199 (365)
T ss_pred cHH----HHH----HHHHHHHhccCCCHHHHHHHHH-cCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC--CCCE
Confidence 000 010 1122478899999999999987 589989999999996 432222111123455666662 3335
Q ss_pred EEEEecccc-cccChHHHHHHHHHHHhhCCCeEEEEEeCCC--cHHHHhh-hc--CcEEEecCCCHHHHHHHHHHcCEEE
Q 039338 313 VLGVAGRLV-KDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP--WEQRYKD-FG--HQVLVMGSMSPAELRAFYNAIDIFV 386 (493)
Q Consensus 313 ~i~~~Gr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~-l~--~~V~~~g~~~~~~~~~~~~~adv~v 386 (493)
+++..+|.. ..|+++.+++++.++.++.+++++++.|.+. ..+.+.+ ++ ++|.|+|.++..++..+++.+|+++
T Consensus 200 vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv 279 (365)
T TIGR00236 200 ILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLIL 279 (365)
T ss_pred EEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEE
Confidence 555554542 3589999999999998777889988876432 1221222 22 6899999999999999999999999
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEec-CCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 039338 387 NPTLRPQGLDLTLMEAMMSGKPVMAS-RFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAA 465 (493)
Q Consensus 387 ~ps~~~eg~~~~~~EAm~~G~PvI~s-~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 465 (493)
.+| |..++|||++|+|||++ +.++.+ +++.++ .+.+++.|++++++++.+++++ ++.+++++++...+..
T Consensus 280 ~~S------g~~~~EA~a~g~PvI~~~~~~~~~-e~~~~g-~~~lv~~d~~~i~~ai~~ll~~-~~~~~~~~~~~~~~g~ 350 (365)
T TIGR00236 280 TDS------GGVQEEAPSLGKPVLVLRDTTERP-ETVEAG-TNKLVGTDKENITKAAKRLLTD-PDEYKKMSNASNPYGD 350 (365)
T ss_pred ECC------hhHHHHHHHcCCCEEECCCCCCCh-HHHhcC-ceEEeCCCHHHHHHHHHHHHhC-hHHHHHhhhcCCCCcC
Confidence 776 34689999999999996 667666 776654 5666756999999999999998 8888888766533322
Q ss_pred HhcCHHHHHHHHHH
Q 039338 466 SMFTANKMALAYER 479 (493)
Q Consensus 466 ~~fs~~~~~~~~~~ 479 (493)
..+++++++.+.+
T Consensus 351 -~~a~~ri~~~l~~ 363 (365)
T TIGR00236 351 -GEASERIVEELLN 363 (365)
T ss_pred -chHHHHHHHHHHh
Confidence 2355555555544
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.89 E-value=3.6e-22 Score=196.84 Aligned_cols=340 Identities=14% Similarity=0.111 Sum_probs=212.5
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEee---cCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFH---EGEAD 159 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 159 (493)
.|||++++. ..||.-.-.. ++++|.+.++++.++......+....... .. ....+... .....
T Consensus 1 ~~ki~i~~G------gt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~l~~~g~~~~~~~ 66 (380)
T PRK00025 1 PLRIAIVAG------EVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCES--LF-----DMEELAVMGLVEVLPR 66 (380)
T ss_pred CceEEEEec------CcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCcc--cc-----CHHHhhhccHHHHHHH
Confidence 378998885 6677666665 99999998888888876543311111110 00 00001100 00001
Q ss_pred ccccccchHHHHHHhcCCCCcEEEeCccc-hhH-----HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhH
Q 039338 160 KWRYSKGWEQFDEENQREPFDVVHSESVA-LPH-----WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFN 233 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~DiI~~~~~~-~~~-----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (493)
.+........+.+.+++.+||+||+++.. +.. ....++| ++...+...+.
T Consensus 67 ~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip-~i~~~~~~~~~----------------------- 122 (380)
T PRK00025 67 LPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIP-TIHYVSPSVWA----------------------- 122 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCC-EEEEeCCchhh-----------------------
Confidence 12233455667777888999999987531 211 1223567 66554431000
Q ss_pred hHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEE
Q 039338 234 KSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLV 313 (493)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~ 313 (493)
....... ++.+.+|.+++.|+...+.+.+ +|. ++.++.|++...... .......+++++++++++++
T Consensus 123 -~~~~~~~------~~~~~~d~i~~~~~~~~~~~~~-~g~---~~~~~G~p~~~~~~~--~~~~~~~~~~l~~~~~~~~i 189 (380)
T PRK00025 123 -WRQGRAF------KIAKATDHVLALFPFEAAFYDK-LGV---PVTFVGHPLADAIPL--LPDRAAARARLGLDPDARVL 189 (380)
T ss_pred -cCchHHH------HHHHHHhhheeCCccCHHHHHh-cCC---CeEEECcCHHHhccc--ccChHHHHHHcCCCCCCCEE
Confidence 0000111 2345678999999999988876 454 367777766443211 11245677889998777555
Q ss_pred EEEecc-cccc-cChHHHHHHHHHHHhhCCCeEEEEEeC-CCcHHHHhhh-----cCcEEEecCCCHHHHHHHHHHcCEE
Q 039338 314 LGVAGR-LVKD-KGHPLLHEAFSKLMVKYPDVYLIVAGS-GPWEQRYKDF-----GHQVLVMGSMSPAELRAFYNAIDIF 385 (493)
Q Consensus 314 i~~~Gr-~~~~-Kg~~~ll~a~~~l~~~~~~~~l~i~G~-g~~~~~~~~l-----~~~V~~~g~~~~~~~~~~~~~adv~ 385 (493)
+++.|+ .... ++++.+++++..+.++.++++++++|+ +...+.++++ +-++.+.. +++.++|+.||++
T Consensus 190 l~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~aDl~ 265 (380)
T PRK00025 190 ALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD----GQKREAMAAADAA 265 (380)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc----ccHHHHHHhCCEE
Confidence 556663 3333 457899999999988888999999976 4444444332 22344432 4899999999999
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEec-----------------CCCCCccceeeeCc--ceEEECC-CHHHHHHHHHHH
Q 039338 386 VNPTLRPQGLDLTLMEAMMSGKPVMAS-----------------RFPSIKGTIVVDDE--FGFMFAP-NVESLHKTLEAA 445 (493)
Q Consensus 386 v~ps~~~eg~~~~~~EAm~~G~PvI~s-----------------~~~~~~~e~v~~~~--~G~~~~~-d~~~l~~~i~~l 445 (493)
+.+| |.+.+|||++|+|+|+. +.++++ +++.+++ .+++.+. |++++++++.++
T Consensus 266 v~~s------G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 266 LAAS------GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLP-NLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred EECc------cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehH-HHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 9976 56778999999999987 344555 5555543 4566666 999999999999
Q ss_pred HHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 039338 446 VSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~ 487 (493)
++| ++.+++|++++.+..+.. . ...++++.+++.++..+
T Consensus 339 l~~-~~~~~~~~~~~~~~~~~~-~-~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 339 LAD-GARRQALLEGFTELHQQL-R-CGADERAAQAVLELLKQ 377 (380)
T ss_pred hcC-HHHHHHHHHHHHHHHHHh-C-CCHHHHHHHHHHHHhhh
Confidence 999 899999999886655542 1 22444444444444433
No 86
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.89 E-value=4.1e-22 Score=209.82 Aligned_cols=275 Identities=17% Similarity=0.174 Sum_probs=194.4
Q ss_pred CcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
-|+|.+|++. ++.++....| ++...+|-+++. ++++..+. ... .-.+-+-.+
T Consensus 134 ~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~---~~~f~~lp--------------~~~------~ll~~ll~~ 190 (726)
T PRK14501 134 GDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPS---FEVFRLLP--------------WRE------EILEGLLGA 190 (726)
T ss_pred CCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCC---hHHHhhCC--------------ChH------HHHHHHhcC
Confidence 4899999874 4445544443 377788876542 22222221 001 111334567
Q ss_pred CeEEEcChhHHHHHHHH----hCC-----------CCCcEEEecCCccCCCccCCcccc------hhhhhhhCCCCCCcE
Q 039338 254 AHHVAISDSCGEMLRDV----YQI-----------PSERVHVILNGINENEYGVDLSLG------QSFRSRIGIPKNASL 312 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~----~~~-----------~~~~v~vi~ngvd~~~~~~~~~~~------~~~r~~~~i~~~~~~ 312 (493)
|.|-+-+......+.+. .+. ...++.++|+|||.+.|.+..... ..+|+.+ .++ .
T Consensus 191 Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~-~ 266 (726)
T PRK14501 191 DLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGR-K 266 (726)
T ss_pred CeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCC-E
Confidence 88887777766554331 121 123689999999999987543211 1233332 233 6
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCC----eEEEEEeCC-----CcHH----HHhhhc-------------CcEEE
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPD----VYLIVAGSG-----PWEQ----RYKDFG-------------HQVLV 366 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g-----~~~~----~~~~l~-------------~~V~~ 366 (493)
+|+++||+++.||+..+++|+.++.+++|+ ++|+++|.+ +..+ .+.++. +.+.+
T Consensus 267 ~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~ 346 (726)
T PRK14501 267 IILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYF 346 (726)
T ss_pred EEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEE
Confidence 788999999999999999999999888875 688888732 2111 222221 13457
Q ss_pred ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcC-----CcEEecCCCCCccceeeeCcceEEECC-CHHHHHH
Q 039338 367 MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSG-----KPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHK 440 (493)
Q Consensus 367 ~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G-----~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~ 440 (493)
.|.++++++.++|+.||++++||.+ ||+|++++|||+|| .||++...|+.. +++ .|++++| |++++++
T Consensus 347 ~~~~~~~~l~~ly~~aDv~v~~S~~-EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-~l~----~~llv~P~d~~~la~ 420 (726)
T PRK14501 347 YRSLPFEELVALYRAADVALVTPLR-DGMNLVAKEYVASRTDGDGVLILSEMAGAAA-ELA----EALLVNPNDIEGIAA 420 (726)
T ss_pred eCCCCHHHHHHHHHhccEEEecccc-cccCcccceEEEEcCCCCceEEEecccchhH-HhC----cCeEECCCCHHHHHH
Confidence 7899999999999999999999976 99999999999995 466666667666 654 4899999 9999999
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 039338 441 TLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 441 ~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~ 487 (493)
+|.+++.++.+.+.+..+++++++.+ |||+..++++.+.|+++..+
T Consensus 421 ai~~~l~~~~~e~~~r~~~~~~~v~~-~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 421 AIKRALEMPEEEQRERMQAMQERLRR-YDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhh
Confidence 99999998556666666789999865 99999999999999987544
No 87
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.88 E-value=1.7e-21 Score=190.97 Aligned_cols=320 Identities=15% Similarity=0.123 Sum_probs=202.3
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhC-CCEEEEEecCCCCCCCCCC--ccccCCCCCCCCCCceEeecCCCCc-
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARR-GHRVHIFTSPVDNINSPSI--SHQENDDGSNNKYPLLHFHEGEADK- 160 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 160 (493)
||++++.. ..+.. .+..+.++|++. |+++.++.+.... ++.. ..... .......+.........
T Consensus 1 ~i~~~~gt------r~~~~-~~~pl~~~l~~~~~~~~~~~~tg~h~--~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 68 (363)
T cd03786 1 KILVVTGT------RPEYI-KLAPLIRALKKDPGFELVLVVTGQHY--DMEMGVTFFEI---LFIIKPDYDLLLGSDSQS 68 (363)
T ss_pred CEEEEEec------CHHHH-HHHHHHHHHhcCCCCCEEEEEeCCCC--ChhhhHHHHHh---hCCCCCCEEEecCCCCCC
Confidence 58888863 22323 477899999987 8999988876544 2111 11000 00111112222111111
Q ss_pred --cccccchHHHHHHhcCCCCcEEEeCccc---hhH---HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHh
Q 039338 161 --WRYSKGWEQFDEENQREPFDVVHSESVA---LPH---WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAF 232 (493)
Q Consensus 161 --~~~~~~~~~~~~~~~~~~~DiI~~~~~~---~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (493)
.........+.+.+++.+||+||+|+.. +.. ....++| ++...||..... . ..+
T Consensus 69 ~~~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iP-vv~~~~g~~s~~--------~-~~~-------- 130 (363)
T cd03786 69 LGAQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIP-VAHVEAGLRSFD--------R-GMP-------- 130 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCC-EEEEecccccCC--------C-CCC--------
Confidence 1122334556666667799999999643 211 1223567 776555521100 0 000
Q ss_pred HhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCc-cCCCccCCcccchhhhhhhCCCCCCc
Q 039338 233 NKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGI-NENEYGVDLSLGQSFRSRIGIPKNAS 311 (493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngv-d~~~~~~~~~~~~~~r~~~~i~~~~~ 311 (493)
.... + ....+.+|.++++|+..++.+.+ +|++.+++.+++|++ |...+..........++.++++++ +
T Consensus 131 ----~~~~-r----~~~~~~ad~~~~~s~~~~~~l~~-~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (363)
T cd03786 131 ----DEEN-R----HAIDKLSDLHFAPTEEARRNLLQ-EGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPK-K 199 (363)
T ss_pred ----chHH-H----HHHHHHhhhccCCCHHHHHHHHH-cCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCC-C
Confidence 0000 0 02345679999999999999987 689999999999985 543322222212223456777654 4
Q ss_pred EEEEEeccccc---ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh----h---cCcEEEecCCCHHHHHHHHHH
Q 039338 312 LVLGVAGRLVK---DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD----F---GHQVLVMGSMSPAELRAFYNA 381 (493)
Q Consensus 312 ~~i~~~Gr~~~---~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~----l---~~~V~~~g~~~~~~~~~~~~~ 381 (493)
+++++.|+... .|+++.++++++.+.+. ++.+++.|+++..+.+++ + .++|.|.|....+++..+|+.
T Consensus 200 ~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 200 YILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHc
Confidence 77778998774 79999999999998653 577777777665554443 3 368999998888999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCC-CccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHH
Q 039338 382 IDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPS-IKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQR 456 (493)
Q Consensus 382 adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~-~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~ 456 (493)
||++|.+| + | ...|||++|+|+|+++..+ .. +.+.++ .+..+..|+++++++|.+++++ ++.+..|
T Consensus 278 ad~~v~~S--g---g-i~~Ea~~~g~PvI~~~~~~~~~-~~~~~g-~~~~~~~~~~~i~~~i~~ll~~-~~~~~~~ 344 (363)
T cd03786 278 ADLVLTDS--G---G-IQEEASFLGVPVLNLRDRTERP-ETVESG-TNVLVGTDPEAILAAIEKLLSD-EFAYSLM 344 (363)
T ss_pred CcEEEEcC--c---c-HHhhhhhcCCCEEeeCCCCccc-hhhhee-eEEecCCCHHHHHHHHHHHhcC-chhhhcC
Confidence 99999988 2 3 5799999999999997533 33 444333 3333333799999999999998 6666555
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=7e-18 Score=163.92 Aligned_cols=222 Identities=32% Similarity=0.510 Sum_probs=180.4
Q ss_pred cCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCC-cEEEEEecccccccChHHHH
Q 039338 252 KYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNA-SLVLGVAGRLVKDKGHPLLH 330 (493)
Q Consensus 252 ~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~-~~~i~~~Gr~~~~Kg~~~ll 330 (493)
..+.+++.+......+.... ...++.+++++++...+... ..++..+. ...++++|++.+.||++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i 218 (381)
T COG0438 150 LADRVIAVSPALKELLEALG--VPNKIVVIPNGIDTEKFAPA---------RIGLLPEGGKFVVLYVGRLDPEKGLDLLI 218 (381)
T ss_pred cccEEEECCHHHHHHHHHhC--CCCCceEecCCcCHHHcCcc---------ccCCCcccCceEEEEeeccChhcCHHHHH
Confidence 47888999988866666643 23378999999998876542 01112222 26788999999999999999
Q ss_pred HHHHHHHhhCCCeEEEEEeCCCcH-H----HHhhhc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHH
Q 039338 331 EAFSKLMVKYPDVYLIVAGSGPWE-Q----RYKDFG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAM 403 (493)
Q Consensus 331 ~a~~~l~~~~~~~~l~i~G~g~~~-~----~~~~l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm 403 (493)
+++..+.+..+++.++++|.++.. + ...+.. ++|.+.|.++.+++..+++.+|++++||.. |++|++++|||
T Consensus 219 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~-e~~~~~~~Ea~ 297 (381)
T COG0438 219 EAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLS-EGFGLVLLEAM 297 (381)
T ss_pred HHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEecccc-ccchHHHHHHH
Confidence 999999988777999999988752 2 222222 789999999988898999999999999965 99999999999
Q ss_pred HcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 404 MSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 404 ~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
++|+|||+++.++.. +++.++.+|+++++ +++++++++..++++ .+.++.+++.+++.+.+.|+|+.+++++.+++.
T Consensus 298 a~g~pvi~~~~~~~~-e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (381)
T COG0438 298 AAGTPVIASDVGGIP-EVVEDGETGLLVPPGDVEELADALEQLLED-PELREELGEAARERVEEEFSWERIAEQLLELYE 375 (381)
T ss_pred hcCCcEEECCCCChH-HHhcCCCceEecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999887 78877777887776 799999999999998 677888887677777677999999999999998
Q ss_pred HHhhc
Q 039338 483 CIKNE 487 (493)
Q Consensus 483 ~i~~~ 487 (493)
.....
T Consensus 376 ~~~~~ 380 (381)
T COG0438 376 ELLAE 380 (381)
T ss_pred HHHhc
Confidence 87643
No 89
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.85 E-value=1.8e-19 Score=177.04 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=198.4
Q ss_pred CcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
-|+|.+|++. ++.++....| ++..-+|-+++. ++++..+. ..... .+-+-.+
T Consensus 133 ~d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs---~eifr~LP-------------~r~~l-------l~glL~a 189 (487)
T TIGR02398 133 GATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPS---ADVFNILP-------------WREQI-------IGSLLCC 189 (487)
T ss_pred CCEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCC---hHHHhhCC-------------chHHH-------HHHHhcC
Confidence 4899999873 4455554443 377777766543 22332221 11111 1334467
Q ss_pred CeEEEcChhHHHHHHHH----hCCC--------------------------------CCcEEEecCCccCCCccCCccc-
Q 039338 254 AHHVAISDSCGEMLRDV----YQIP--------------------------------SERVHVILNGINENEYGVDLSL- 296 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~----~~~~--------------------------------~~~v~vi~ngvd~~~~~~~~~~- 296 (493)
|.|=+-+...++.+.+. .|.. .-++.++|.|||++.|......
T Consensus 190 DliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~ 269 (487)
T TIGR02398 190 DYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAA 269 (487)
T ss_pred CeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCc
Confidence 88888887776655441 1211 1137899999999988543211
Q ss_pred -----chhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCC----eEEEEEeCCC---------cHHHHh
Q 039338 297 -----GQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPD----VYLIVAGSGP---------WEQRYK 358 (493)
Q Consensus 297 -----~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~---------~~~~~~ 358 (493)
...+|++++ ++ .+|+.++|++..||+...++|+.++.+++|+ +.|+++|.+. .+..++
T Consensus 270 ~~~~~~~~lr~~~~---~~-kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~ 345 (487)
T TIGR02398 270 SIREMMERIRSELA---GV-KLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIE 345 (487)
T ss_pred hHHHHHHHHHHHcC---Cc-eEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHH
Confidence 344677776 33 5778999999999999999999999999885 6898888642 122223
Q ss_pred hhc-------------CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC----cEEecCCCCCccce
Q 039338 359 DFG-------------HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK----PVMASRFPSIKGTI 421 (493)
Q Consensus 359 ~l~-------------~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~----PvI~s~~~~~~~e~ 421 (493)
++. +-+.+.+.++.+++..+|+.||+++.++.+ ||++++..||++|+. |+|.|..+|..+ .
T Consensus 346 ~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lr-DGmNLVa~Eyva~~~~~~GvLILSefaGaa~-~ 423 (487)
T TIGR02398 346 QAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLR-DGLNLVAKEYVAAQGLLDGVLVLSEFAGAAV-E 423 (487)
T ss_pred HHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccc-cccCcchhhHHhhhcCCCCCEEEeccccchh-h
Confidence 221 346888999999999999999999999987 999999999999999 999999999873 3
Q ss_pred eeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 422 VVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 422 v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
+ ..+++++| |+++++++|.+++.++.+++++.-++.++.+.. +|....++.+.+-+.
T Consensus 424 l---~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~-~d~~~W~~~fl~~l~ 481 (487)
T TIGR02398 424 L---KGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNY-YDVQRWADEFLAAVS 481 (487)
T ss_pred c---CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhh
Confidence 3 35899999 999999999999999878888888888888877 798888888776554
No 90
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.2e-16 Score=140.52 Aligned_cols=341 Identities=17% Similarity=0.201 Sum_probs=217.5
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC--C------Ccc-ccccchH----HHH
Q 039338 105 HAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE--A------DKW-RYSKGWE----QFD 171 (493)
Q Consensus 105 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~-~~~~~~~----~~~ 171 (493)
++..=|..|++.|++|.++...... +..+. .. .+.+++.... + ... ...+.+- .+.
T Consensus 28 RMqYHA~Sla~~gf~VdliGy~~s~---p~e~l------~~--hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~ 96 (444)
T KOG2941|consen 28 RMQYHALSLAKLGFQVDLIGYVESI---PLEEL------LN--HPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLW 96 (444)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCC---ChHHH------hc--CCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHH
Confidence 4666688889999999999876653 11111 11 2223332221 1 110 1111111 112
Q ss_pred HHhcCCCCcEEEeCcc-chhHHhh------hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHH
Q 039338 172 EENQREPFDVVHSESV-ALPHWLA------RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVL 244 (493)
Q Consensus 172 ~~~~~~~~DiI~~~~~-~~~~~~~------~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (493)
.+.....+|+|.+.++ +++.... ....+.++.||++.+.. . -.+......+. -.+.+..
T Consensus 97 aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl-~----l~~~~g~~h~l-----V~l~~~~---- 162 (444)
T KOG2941|consen 97 ALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSL-Q----LKLKLGFQHPL-----VRLVRWL---- 162 (444)
T ss_pred HHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHH-H----HHhhcCCCCch-----HHHHHHH----
Confidence 2223678999999876 2332211 12234999999976641 1 11111111110 1122222
Q ss_pred HHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCcc-----CCC----ccC----------Ccc-----cchhh
Q 039338 245 NEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGIN-----ENE----YGV----------DLS-----LGQSF 300 (493)
Q Consensus 245 ~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd-----~~~----~~~----------~~~-----~~~~~ 300 (493)
|..+-+.||.-.|+++.+++.+.+.+|+. ++.|++.--. .+. |.+ ... +...+
T Consensus 163 -E~~fgk~a~~nLcVT~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf 239 (444)
T KOG2941|consen 163 -EKYFGKLADYNLCVTKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAF 239 (444)
T ss_pred -HHHhhcccccchhhHHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhH
Confidence 33556789999999999999999999874 4445443111 110 111 100 01111
Q ss_pred hhhhC-----CCCCCcEEEEEecccccccChHHHHHHHHHHHhh-------CCCeEEEEEeCCCcHHHHhhhc-----Cc
Q 039338 301 RSRIG-----IPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVK-------YPDVYLIVAGSGPWEQRYKDFG-----HQ 363 (493)
Q Consensus 301 r~~~~-----i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~-------~~~~~l~i~G~g~~~~~~~~l~-----~~ 363 (493)
-++.. ...+.+.+++...+..+..++..+++|+....++ .|.+-++|.|.||.++.+.+.. .+
T Consensus 240 ~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~ 319 (444)
T KOG2941|consen 240 TKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQH 319 (444)
T ss_pred hhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccc
Confidence 12221 1233456777888899999999999999855332 3788889999999988776543 45
Q ss_pred EE-EecCCCHHHHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHH
Q 039338 364 VL-VMGSMSPAELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHK 440 (493)
Q Consensus 364 V~-~~g~~~~~~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~ 440 (493)
|. ...++.-|+.+.+++.||+.|. +|..+-.+|+++.+...||+||++-+...+. |+|.+++||++|+ |.++|++
T Consensus 320 v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~-ELVkh~eNGlvF~-Ds~eLa~ 397 (444)
T KOG2941|consen 320 VQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLD-ELVKHGENGLVFE-DSEELAE 397 (444)
T ss_pred eeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHH-HHHhcCCCceEec-cHHHHHH
Confidence 54 4577888999999999999765 5544566899999999999999999999998 9999999999999 8999999
Q ss_pred HHHHHHHc---CcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 441 TLEAAVSE---GPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 441 ~i~~ll~~---~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
++..+..+ +...+.++..++++..+ ..|+...++.
T Consensus 398 ql~~lf~~fp~~a~~l~~lkkn~~e~~e--~RW~~~W~~~ 435 (444)
T KOG2941|consen 398 QLQMLFKNFPDNADELNQLKKNLREEQE--LRWDESWERT 435 (444)
T ss_pred HHHHHHhcCCCCHHHHHHHHHhhHHHHh--hhHHHHHHHh
Confidence 99999992 27788888888888743 4666554443
No 91
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.79 E-value=7.1e-19 Score=146.38 Aligned_cols=131 Identities=35% Similarity=0.503 Sum_probs=100.0
Q ss_pred EEEEEecccccccChHHHHH-HHHHHHhhCCCeEEEEEeCCCcHHHHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 312 LVLGVAGRLVKDKGHPLLHE-AFSKLMVKYPDVYLIVAGSGPWEQRYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~-a~~~l~~~~~~~~l~i~G~g~~~~~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
++|+++|++.+.|+++.+++ ++.++.++.|+++|+|+|.++. .++++ .++|.++|++ +++.+++++||+++.|+
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~~~~~v~~~g~~--~e~~~~l~~~dv~l~p~ 78 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRLRRPNVRFHGFV--EELPEILAAADVGLIPS 78 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCHHHCTEEEE-S---HHHHHHHHC-SEEEE-B
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHhcCCCEEEcCCH--HHHHHHHHhCCEEEEEe
Confidence 67899999999999999999 9999999999999999999766 36655 6899999999 68999999999999998
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
...++++++++|||++|+|||+++. +.. +++...+.|.++..|+++++++|.++++|
T Consensus 79 ~~~~~~~~k~~e~~~~G~pvi~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 79 RFNEGFPNKLLEAMAAGKPVIASDN-GAE-GIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp SS-SCC-HHHHHHHCTT--EEEEHH-HCH-CHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eCCCcCcHHHHHHHHhCCCEEECCc-chh-hheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 6457999999999999999999998 444 55555667877744999999999999875
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.77 E-value=4.4e-17 Score=170.21 Aligned_cols=275 Identities=18% Similarity=0.168 Sum_probs=195.0
Q ss_pred CcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
=|+|.+|++. ++.++....| ++.+.+|-+++. ++++..+. .-... .+-+-.|
T Consensus 232 gD~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs---~Eifr~LP-------------~r~el-------L~glL~a 288 (934)
T PLN03064 232 GDVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPS---SEIHRTLP-------------SRSEL-------LRSVLAA 288 (934)
T ss_pred CCEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCC---hHHHhhCC-------------cHHHH-------HHHHhcC
Confidence 3799999874 4455555444 377788876543 23333321 11111 1334578
Q ss_pred CeEEEcChhHHHHHHHH----hCCC-----------CCcEEEecCCccCCCccCCccc------chhhhhhhCCCCCCcE
Q 039338 254 AHHVAISDSCGEMLRDV----YQIP-----------SERVHVILNGINENEYGVDLSL------GQSFRSRIGIPKNASL 312 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~----~~~~-----------~~~v~vi~ngvd~~~~~~~~~~------~~~~r~~~~i~~~~~~ 312 (493)
|.|=+.+...+..+.+. .|.. ..++.+.|-|||.+.|...... ...++++++ ++ .
T Consensus 289 DlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~-k 364 (934)
T PLN03064 289 DLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GR-K 364 (934)
T ss_pred CeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---Cc-e
Confidence 98888888777766541 2211 1236677999999888643221 234566654 33 5
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeE--EEEE-------eCCCcHHH----Hhhhc------------CcEE-E
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVY--LIVA-------GSGPWEQR----YKDFG------------HQVL-V 366 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~--l~i~-------G~g~~~~~----~~~l~------------~~V~-~ 366 (493)
+|+.++|++..||+...++|+.++.+++|+++ ++++ |+++..+. +.++. ..|. +
T Consensus 365 iIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~ 444 (934)
T PLN03064 365 VMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHL 444 (934)
T ss_pred EEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEe
Confidence 77899999999999999999999999888754 4554 33333322 22211 1133 3
Q ss_pred ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC----cEEecCCCCCccceeeeCcceEEECC-CHHHHHHH
Q 039338 367 MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK----PVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKT 441 (493)
Q Consensus 367 ~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~----PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~ 441 (493)
...++.+++..+|+.||++|+||.+ ||++++..|||+|+. ++|.|...|.. +.+ +..+++++| |+++++++
T Consensus 445 ~~~l~~eeL~AlY~~ADV~lvTslr-DGmNLva~Eyva~~~~~~GvLILSEfaGaa-~~L--~~~AllVNP~D~~~vA~A 520 (934)
T PLN03064 445 DRSLDFHALCALYAVTDVALVTSLR-DGMNLVSYEFVACQDSKKGVLILSEFAGAA-QSL--GAGAILVNPWNITEVAAS 520 (934)
T ss_pred ccCCCHHHHHHHHHhCCEEEeCccc-cccCchHHHHHHhhcCCCCCeEEeCCCchH-HHh--CCceEEECCCCHHHHHHH
Confidence 4458999999999999999999987 999999999999954 44558888877 444 456899999 99999999
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 039338 442 LEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIK 485 (493)
Q Consensus 442 i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~ 485 (493)
|.+++..++++++++.++.++++.. +|+...++.+.+-+.+..
T Consensus 521 I~~AL~M~~~Er~~r~~~~~~~V~~-~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 521 IAQALNMPEEEREKRHRHNFMHVTT-HTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHH
Confidence 9999997688999999999999987 799999999877776654
No 93
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.75 E-value=2.8e-16 Score=153.70 Aligned_cols=322 Identities=12% Similarity=0.074 Sum_probs=192.3
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||++.+. +.||.-.-. .++++|.++|+++.++......+.....+..-.. ..... .-+...........
T Consensus 7 ki~i~aG------gtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~--~~l~v--~G~~~~l~~~~~~~ 75 (385)
T TIGR00215 7 TIALVAG------EASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSM--EELSV--MGLREVLGRLGRLL 75 (385)
T ss_pred eEEEEeC------CccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCccccCh--HHhhh--ccHHHHHHHHHHHH
Confidence 6777764 667766556 9999999999999999876543222111110000 00000 00000111112233
Q ss_pred cchHHHHHHhcCCCCcEEEeCcc-chhH-----HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESV-ALPH-----WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQG 238 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~-~~~~-----~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (493)
....+..+.+++.+||+|+..+. .++. ....++| +++.+. + ..+ . |.....
T Consensus 76 ~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip-~v~~i~--P-~~w-----a-------------w~~~~~- 132 (385)
T TIGR00215 76 KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIK-IIYYIS--P-QVW-----A-------------WRKWRA- 132 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCC-EEEEeC--C-cHh-----h-------------cCcchH-
Confidence 44556677778999999999875 2222 2223456 553321 1 000 0 000001
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG 318 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G 318 (493)
+.+.+.+|+++++++...+.+.+ +|. ++.++.|++....... ...+...|++++++++++.++++.|
T Consensus 133 --------r~l~~~~d~v~~~~~~e~~~~~~-~g~---~~~~vGnPv~~~~~~~-~~~~~~~r~~lgl~~~~~~Ilvl~G 199 (385)
T TIGR00215 133 --------KKIEKATDFLLAILPFEKAFYQK-KNV---PCRFVGHPLLDAIPLY-KPDRKSAREKLGIDHNGETLALLPG 199 (385)
T ss_pred --------HHHHHHHhHhhccCCCcHHHHHh-cCC---CEEEECCchhhhcccc-CCCHHHHHHHcCCCCCCCEEEEECC
Confidence 12345688999999999988875 443 5677888874432211 1233456788999887755554555
Q ss_pred -cccc-ccChHHHHHHHHHHHhhCCCeEEEEEe-CCCcHHHHhh----h--cCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 319 -RLVK-DKGHPLLHEAFSKLMVKYPDVYLIVAG-SGPWEQRYKD----F--GHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 319 -r~~~-~Kg~~~ll~a~~~l~~~~~~~~l~i~G-~g~~~~~~~~----l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
|..+ .|++..+++++..+.+..|++++++.+ ++...+.+++ + ...|.+.+. +...+|++||++|.+|
T Consensus 200 SR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aADl~V~~S 275 (385)
T TIGR00215 200 SRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG----DARKAMFAADAALLAS 275 (385)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc----hHHHHHHhCCEEeecC
Confidence 5555 689999999999998888899887654 4333333332 2 235555543 5568999999999988
Q ss_pred CCCCCCChHHHHHHHcCCcEEecC-CC----------------CCccceeeeCcceE-EE-CC-CHHHHHHHHHHHHHcC
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASR-FP----------------SIKGTIVVDDEFGF-MF-AP-NVESLHKTLEAAVSEG 449 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~-~~----------------~~~~e~v~~~~~G~-~~-~~-d~~~l~~~i~~ll~~~ 449 (493)
|.+.+|+|++|+|+|... .. +.+ .++.+.+..- +. .. +++.+++.+.++++|
T Consensus 276 ------Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~-nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~- 347 (385)
T TIGR00215 276 ------GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLP-NILANRLLVPELLQEECTPHPLAIALLLLLEN- 347 (385)
T ss_pred ------CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeecc-HHhcCCccchhhcCCCCCHHHHHHHHHHHhcC-
Confidence 556679999999998872 11 112 2222222222 12 22 789999999999998
Q ss_pred c----HHHHHHHHHHHHHHH
Q 039338 450 P----MRLAQRGEACRQYAA 465 (493)
Q Consensus 450 ~----~~~~~~~~~~~~~~~ 465 (493)
+ +.++++.+...+..+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~ 367 (385)
T TIGR00215 348 GLKAYKEMHRERQFFEELRQ 367 (385)
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 7 777777666655444
No 94
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.74 E-value=2.1e-16 Score=158.44 Aligned_cols=209 Identities=11% Similarity=0.106 Sum_probs=167.2
Q ss_pred hhccCCeEEEcChhHHHHHHHHhCCC--CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEec--cccccc
Q 039338 249 FFNKYAHHVAISDSCGEMLRDVYQIP--SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAG--RLVKDK 324 (493)
Q Consensus 249 ~~~~~d~ii~~S~~~~~~~~~~~~~~--~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~G--r~~~~K 324 (493)
.+.++|++|+.|+...+.+.++++-. ..++..||.+.- .. .+ |.....+..+++++ |+ +.|
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~-~~------------~~s~r~~~~~I~v~idrL-~ek 333 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RL-RL------------GQSQQLYETEIGFWIDGL-SDE 333 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EE-ec------------ChhhcccceEEEEEcCCC-ChH
Confidence 45688999999988788777766411 134667775543 11 11 11222224566788 99 999
Q ss_pred ChHHHHHHHHHHHhhCCCeEEEEEeCCCcH---HHH----hhh--c-----------------------------CcEEE
Q 039338 325 GHPLLHEAFSKLMVKYPDVYLIVAGSGPWE---QRY----KDF--G-----------------------------HQVLV 366 (493)
Q Consensus 325 g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~---~~~----~~l--~-----------------------------~~V~~ 366 (493)
.++.+++++.++.++.|+++|.+.|.+.+. +.+ +++ . .+|.|
T Consensus 334 ~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 413 (519)
T TIGR03713 334 ELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAF 413 (519)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEE
Confidence 999999999999999999999999977543 222 111 2 58999
Q ss_pred ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 367 MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 367 ~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
.|+.+..++.+.|..+.++|.+|. .||++ +++||++.|+|+| +. |.. ++|.++.||+++. |..+|+++|..++
T Consensus 414 ~gy~~e~dl~~~~~~arl~id~s~-~eg~~-~~ieAiS~GiPqI--ny-g~~-~~V~d~~NG~li~-d~~~l~~al~~~L 486 (519)
T TIGR03713 414 TTLTNEEDLISALDKLRLIIDLSK-EPDLY-TQISGISAGIPQI--NK-VET-DYVEHNKNGYIID-DISELLKALDYYL 486 (519)
T ss_pred EecCCHHHHHHHHhhheEEEECCC-CCChH-HHHHHHHcCCCee--ec-CCc-eeeEcCCCcEEeC-CHHHHHHHHHHHH
Confidence 999988899999999999999995 59999 9999999999999 33 334 8999999999996 9999999999999
Q ss_pred HcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 447 SEGPMRLAQRGEACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
.+ ++.+.++...+.+.+.+ ||-++++++|.+++
T Consensus 487 ~~-~~~wn~~~~~sy~~~~~-yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 487 DN-LKNWNYSLAYSIKLIDD-YSSENIIERLNELI 519 (519)
T ss_pred hC-HHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhC
Confidence 99 99999999999999977 99999999998763
No 95
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.8e-15 Score=145.22 Aligned_cols=342 Identities=13% Similarity=0.174 Sum_probs=221.9
Q ss_pred CCCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC
Q 039338 78 QPSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE 157 (493)
Q Consensus 78 ~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
++..+++||+++++.+ ..+.++..+..+.+++.+.-+||..+....+. .+...+. +......+.-..
T Consensus 254 ~~~~~rlRvGylS~dl----r~Havg~l~~~v~e~hDRdkfEvfay~~g~~~-~dal~~r------I~a~~~~~~~~~-- 320 (620)
T COG3914 254 KRNGKRLRVGYLSSDL----RSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPH-TDALQER------ISAAVEKWYPIG-- 320 (620)
T ss_pred cccccceeEEEecccc----ccchHHHHHHHHHHHhchhheEEEEEecCCCC-chhHHHH------HHHhhhheeccC--
Confidence 4567899999999987 66888899999999999988999999887433 1222222 111111111110
Q ss_pred CCccccccchHHHHHHhcCCCCcEEEeC-----ccchhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHh
Q 039338 158 ADKWRYSKGWEQFDEENQREPFDVVHSE-----SVALPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAF 232 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~DiI~~~-----~~~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (493)
.. ........+...++||.+-- ......+..+..| +.++|-|++.......+
T Consensus 321 --~~----dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAP-iqvswlGy~aT~g~p~~---------------- 377 (620)
T COG3914 321 --RM----DDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAP-IQVSWLGYPATTGSPNM---------------- 377 (620)
T ss_pred --Cc----CHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCc-eEEeecccccccCCCcc----------------
Confidence 00 12455556668899998542 3344444445567 99999886532110000
Q ss_pred HhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHh-CCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCc
Q 039338 233 NKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVY-QIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNAS 311 (493)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~-~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~ 311 (493)
=|--+|.++.+ +...+++.+.. .+| ..+-++|- +.+... ..-|.++|+|++.
T Consensus 378 ----------------DY~I~D~y~vP-p~ae~yysEkl~RLp-----~cy~p~d~--~~~v~p--~~sR~~lglp~~a- 430 (620)
T COG3914 378 ----------------DYFISDPYTVP-PTAEEYYSEKLWRLP-----QCYQPVDG--FEPVTP--PPSRAQLGLPEDA- 430 (620)
T ss_pred ----------------eEEeeCceecC-chHHHHHHHHHHhcc-----cccCCCCC--cccCCC--CcchhhcCCCCCe-
Confidence 01123444444 56666665532 222 12233332 222211 1347889999987
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH---HHhhh----c---CcEEEecCCCHHHHHHHHHH
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ---RYKDF----G---HQVLVMGSMSPAELRAFYNA 381 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~---~~~~l----~---~~V~~~g~~~~~~~~~~~~~ 381 (493)
++++++++. .|-...+++.+.++.+..|+-.|++.|.|+..+ .++++ + ++++|.+..+.++..+.|.-
T Consensus 431 vVf~c~~n~--~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~i 508 (620)
T COG3914 431 VVFCCFNNY--FKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGI 508 (620)
T ss_pred EEEEecCCc--ccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhch
Confidence 777776654 588999999999999999999999998865443 23332 2 89999999999999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCc----cceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 382 IDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIK----GTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 382 adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~----~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
||+++.+. +.|-++|.+||+++|+|||+-...... ..++..-+.--++..+.+++++.-..+-.| ...+++.+
T Consensus 509 ADlvLDTy--PY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~d-ral~q~~r 585 (620)
T COG3914 509 ADLVLDTY--PYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSD-RALRQQVR 585 (620)
T ss_pred hheeeecc--cCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhccc-HHHHHhhH
Confidence 99999866 567789999999999999975311110 012222111112222668888888888777 66666666
Q ss_pred HHHHHHHHH--hcCHHHHHHHHHHHHHHHhhc
Q 039338 458 EACRQYAAS--MFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 458 ~~~~~~~~~--~fs~~~~~~~~~~~~~~i~~~ 487 (493)
..-++.... -|+.+.++++++.+|.+|.++
T Consensus 586 ~~l~~~r~tspL~d~~~far~le~~y~~M~~~ 617 (620)
T COG3914 586 AELKRSRQTSPLFDPKAFARKLETLYWGMWSE 617 (620)
T ss_pred HHHHhccccCcccCHHHHHHHHHHHHHHHHHh
Confidence 655555544 489999999999999998764
No 96
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.69 E-value=8.5e-15 Score=148.59 Aligned_cols=231 Identities=19% Similarity=0.235 Sum_probs=169.1
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCC-----C--CCcEEEecCCccCCCccCCccc------------------------
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQI-----P--SERVHVILNGINENEYGVDLSL------------------------ 296 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~-----~--~~~v~vi~ngvd~~~~~~~~~~------------------------ 296 (493)
..+..++.+.+||+...+...+.++. + ..++.-|-||||...|.+....
T Consensus 258 lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~ 337 (601)
T TIGR02094 258 LALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAI 337 (601)
T ss_pred HHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhc
Confidence 34667899999999888744432221 1 2358889999999887653211
Q ss_pred ---------------chhhhh----h-----------------hC--CCCCCcEEEEEecccccccChHHHHHHHHHHHh
Q 039338 297 ---------------GQSFRS----R-----------------IG--IPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMV 338 (493)
Q Consensus 297 ---------------~~~~r~----~-----------------~~--i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~ 338 (493)
+..+.+ + +| ++++. +++++++|+..+||.+++++++.++.+
T Consensus 338 ~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~-~~ig~v~Rl~~yKr~dLil~~i~~l~~ 416 (601)
T TIGR02094 338 DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDV-LTIGFARRFATYKRADLIFRDLERLAR 416 (601)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCC-cEEEEEEcchhhhhHHHHHHHHHHHHH
Confidence 001111 1 11 23333 789999999999999999999988874
Q ss_pred --hC--CCeEEEEEeCCCc--------HHHHhhh------cCcEEEecCCCHHHHHHHHHHcCEEEe-CCCCCCCCChHH
Q 039338 339 --KY--PDVYLIVAGSGPW--------EQRYKDF------GHQVLVMGSMSPAELRAFYNAIDIFVN-PTLRPQGLDLTL 399 (493)
Q Consensus 339 --~~--~~~~l~i~G~g~~--------~~~~~~l------~~~V~~~g~~~~~~~~~~~~~adv~v~-ps~~~eg~~~~~ 399 (493)
.. .++++++.|.+.. .+.+.++ .++|.|+...+.+--..+++.||++++ ||.-.|.+|++-
T Consensus 417 i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsq 496 (601)
T TIGR02094 417 ILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSG 496 (601)
T ss_pred HhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHH
Confidence 21 3699999998752 2222222 268999888887777789999999999 986359999999
Q ss_pred HHHHHcCCcEEecCCCCCccceeeeCcceEEEC------------C-CHHHHHHHHHHHHH----cC-----cHHHHHHH
Q 039338 400 MEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFA------------P-NVESLHKTLEAAVS----EG-----PMRLAQRG 457 (493)
Q Consensus 400 ~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~------------~-d~~~l~~~i~~ll~----~~-----~~~~~~~~ 457 (493)
+-||..|.+.+++-.|... |.. ++.+||.|. . |.++|-++|++.+. +. +..+.++.
T Consensus 497 Mka~~nGgL~~sv~DG~~~-E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~ 574 (601)
T TIGR02094 497 MKAAMNGVLNLSILDGWWG-EGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMM 574 (601)
T ss_pred HHHHHcCCceeecccCccc-ccC-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHH
Confidence 9999999999999877776 544 678999998 4 89999999977662 21 23366666
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 458 EACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 458 ~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
+++.......|||++++++|.++|
T Consensus 575 k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 575 KESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHh
Confidence 666555544799999999999987
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=3.9e-14 Score=134.90 Aligned_cols=323 Identities=17% Similarity=0.147 Sum_probs=194.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCE-EEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC----
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHR-VHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA---- 158 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (493)
|+|++... ..||+-.-...++++|.++|++ |.++...... +..... .....++.+....
T Consensus 1 ~~ivl~~g------GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~--e~~l~~--------~~~~~~~~I~~~~~~~~ 64 (357)
T COG0707 1 KKIVLTAG------GTGGHVFPALALAEELAKRGWEQVIVLGTGDGL--EAFLVK--------QYGIEFELIPSGGLRRK 64 (357)
T ss_pred CeEEEEeC------CCccchhHHHHHHHHHHhhCccEEEEecccccc--eeeecc--------ccCceEEEEeccccccc
Confidence 34555543 7799999999999999999995 6665443333 111111 1122233222211
Q ss_pred -------CccccccchHHHHHHhcCCCCcEEEeCcc--chhH---HhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCC
Q 039338 159 -------DKWRYSKGWEQFDEENQREPFDVVHSESV--ALPH---WLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLE 226 (493)
Q Consensus 159 -------~~~~~~~~~~~~~~~~~~~~~DiI~~~~~--~~~~---~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~ 226 (493)
..+.......+.++.+++.+||+|+..+. ..+. ....++| ++....+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iP-v~ihEqn~~~G---------------- 127 (357)
T COG0707 65 GSLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIP-VIIHEQNAVPG---------------- 127 (357)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCC-EEEEecCCCcc----------------
Confidence 11223334455667778999999998653 2333 3334566 55554442211
Q ss_pred ccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCC
Q 039338 227 PMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGI 306 (493)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i 306 (493)
...+. ..+.++.|.+.-+. . . -+.+.+++.+..|++..+... .+. ...+....
T Consensus 128 --------~ank~---------~~~~a~~V~~~f~~----~-~-~~~~~~~~~~tG~Pvr~~~~~-~~~--~~~~~~~~- 180 (357)
T COG0707 128 --------LANKI---------LSKFAKKVASAFPK----L-E-AGVKPENVVVTGIPVRPEFEE-LPA--AEVRKDGR- 180 (357)
T ss_pred --------hhHHH---------hHHhhceeeecccc----c-c-ccCCCCceEEecCcccHHhhc-cch--hhhhhhcc-
Confidence 11111 12233443332222 1 1 234567899999999887665 222 12222211
Q ss_pred CCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEE-EeCCCcHHHHhhhc-Cc-EEEecCCCHHHHHHHHHHcC
Q 039338 307 PKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIV-AGSGPWEQRYKDFG-HQ-VLVMGSMSPAELRAFYNAID 383 (493)
Q Consensus 307 ~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-~G~g~~~~~~~~l~-~~-V~~~g~~~~~~~~~~~~~ad 383 (493)
.+.+.++++-|+.+..+-.+.+.++...+.+ +++++. +|.+...+....+. .+ +.+.++. +++..+|++||
T Consensus 181 -~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~--~dm~~~~~~AD 254 (357)
T COG0707 181 -LDKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGKNDLEELKSAYNELGVVRVLPFI--DDMAALLAAAD 254 (357)
T ss_pred -CCCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHH--hhHHHHHHhcc
Confidence 1454666666776665555555566666643 456554 45544233333332 12 8999998 68999999999
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc-------ceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHH
Q 039338 384 IFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG-------TIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRL 453 (493)
Q Consensus 384 v~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~-------e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~ 453 (493)
++|. + .| ++|+.|..++|+|+|.-..+...+ ..+++.+.|.+++. +++.+.+.|.+++++ ++.+
T Consensus 255 LvIs---R-aG-a~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~-~~~l 328 (357)
T COG0707 255 LVIS---R-AG-ALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN-PEKL 328 (357)
T ss_pred EEEe---C-Cc-ccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC-HHHH
Confidence 9995 3 23 579999999999999987665521 23555667888876 589999999999999 9999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 039338 454 AQRGEACRQYAASMFTANKMALAYER 479 (493)
Q Consensus 454 ~~~~~~~~~~~~~~fs~~~~~~~~~~ 479 (493)
++|.+++++....+ ..+++++.++.
T Consensus 329 ~~m~~~a~~~~~p~-aa~~i~~~~~~ 353 (357)
T COG0707 329 KAMAENAKKLGKPD-AAERIADLLLA 353 (357)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 99999998876653 44555554443
No 98
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.64 E-value=1.8e-15 Score=131.96 Aligned_cols=174 Identities=23% Similarity=0.255 Sum_probs=95.3
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccccc
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSK 165 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (493)
|+++...+ ...||+++++.+|+++|+++||+|++++..... ....... .... ...............
T Consensus 1 ili~~~~~---~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~--~~~~~~~------~~~~--~~~~~~~~~~~~~~~ 67 (177)
T PF13439_consen 1 ILITNIFL---PNIGGAERVVLNLARALAKRGHEVTVVSPGVKD--PIEEELV------KIFV--KIPYPIRKRFLRSFF 67 (177)
T ss_dssp -EEECC-T---TSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TT--S-SSTEE------EE-----TT-SSTSS--HHHH
T ss_pred CEEEEecC---CCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCc--cchhhcc------ceee--eeecccccccchhHH
Confidence 45566554 378999999999999999999999999887666 1111100 0000 000000111222233
Q ss_pred chHHHHHHhcCCCCcEEEeCccchh---HHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHH
Q 039338 166 GWEQFDEENQREPFDVVHSESVALP---HWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLK 242 (493)
Q Consensus 166 ~~~~~~~~~~~~~~DiI~~~~~~~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (493)
....+.+.+++.+||+||+|..... .......| .+.+.|+.+.. ....... ......+..
T Consensus 68 ~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~~~~-~v~~~H~~~~~-------~~~~~~~---------~~~~~~~~~ 130 (177)
T PF13439_consen 68 FMRRLRRLIKKEKPDIVHIHGPPAFWIALLACRKVP-IVYTIHGPYFE-------RRFLKSK---------LSPYSYLNF 130 (177)
T ss_dssp HHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHHCSC-EEEEE-HHH---------HHTTTTS---------CCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEecccchhHHHHHhccCCC-EEEEeCCCccc-------ccccccc---------cchhhhhhh
Confidence 3456666777779999999975322 11222567 99999987632 0000000 011111111
Q ss_pred HHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCcc
Q 039338 243 VLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYG 291 (493)
Q Consensus 243 ~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~ 291 (493)
.. +..+++.+|.++++|+..++.+.+ +|++++++.||+||+|.+.|.
T Consensus 131 ~~-~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 131 RI-ERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp CT-THHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred hh-hhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 11 224478999999999999999999 999999999999999998763
No 99
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.63 E-value=1.4e-14 Score=140.27 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=123.7
Q ss_pred hhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcH-HH----Hhhhc---CcEEEecCC
Q 039338 299 SFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWE-QR----YKDFG---HQVLVMGSM 370 (493)
Q Consensus 299 ~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~-~~----~~~l~---~~V~~~g~~ 370 (493)
..|+.+|+|++. ++|++++++. |-.+..+++|.++.++.|+.+|++...+... +. +++.+ +++.|.+..
T Consensus 274 ~~R~~~gLp~d~-vvF~~fn~~~--KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~ 350 (468)
T PF13844_consen 274 TTRAQYGLPEDA-VVFGSFNNLF--KISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVA 350 (468)
T ss_dssp EETGGGT--SSS-EEEEE-S-GG--G--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE--
T ss_pred cCHHHcCCCCCc-eEEEecCccc--cCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCC
Confidence 467899999887 8888877765 8889999999999999999999887654322 22 22333 889999999
Q ss_pred CHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccc----eeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 371 SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGT----IVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 371 ~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e----~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
+.++....|+.+|+++.+. +.+-+++.+||+++|+|||+.......+. ++..-+..-++..|.+++.+...++.
T Consensus 351 ~~~ehl~~~~~~DI~LDT~--p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La 428 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTF--PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLA 428 (468)
T ss_dssp -HHHHHHHGGG-SEEE--S--SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhCCEEeeCC--CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHh
Confidence 9999999999999999986 35668999999999999999864443321 11111111123338899999999999
Q ss_pred HcCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHH
Q 039338 447 SEGPMRLAQRGEACRQYAASM--FTANKMALAYERLFLCI 484 (493)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~~~~i 484 (493)
.| ++.+++++++.++...+. |+....++++++.|++|
T Consensus 429 ~D-~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 429 TD-PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp H--HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 99 999999999998877554 99999999999999986
No 100
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.62 E-value=5.5e-13 Score=128.72 Aligned_cols=302 Identities=15% Similarity=0.162 Sum_probs=174.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC-CC--c
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE-AD--K 160 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 160 (493)
||.++++. ...||+-.-...++++|.++||+|.+++..... +.. ..+ ..+.+...+.... .+ .
T Consensus 1 ~~~i~~~~-----GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~--e~~--l~~-----~~g~~~~~~~~~~l~~~~~ 66 (352)
T PRK12446 1 MKKIVFTG-----GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI--EKT--IIE-----KENIPYYSISSGKLRRYFD 66 (352)
T ss_pred CCeEEEEc-----CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc--ccc--cCc-----ccCCcEEEEeccCcCCCch
Confidence 55445543 377898888999999999999999999866554 111 100 1111111111111 01 1
Q ss_pred c-------ccccchHHHHHHhcCCCCcEEEeCccc--hhHH---hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCcc
Q 039338 161 W-------RYSKGWEQFDEENQREPFDVVHSESVA--LPHW---LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPM 228 (493)
Q Consensus 161 ~-------~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~---~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 228 (493)
+ .......+..+++++.+||+||.++.. ++.. ...++| + .+|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p-~--~i~e~n~~------------------ 125 (352)
T PRK12446 67 LKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVP-V--LLHESDMT------------------ 125 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCC-E--EEECCCCC------------------
Confidence 1 112233345566789999999998742 2233 333455 3 33431100
Q ss_pred chHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCC
Q 039338 229 SLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPK 308 (493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~ 308 (493)
.....+ -+.+.++.+.+.=+... + +++.+++.+..+++..+.... .....++.+++++
T Consensus 126 --------~g~~nr-----~~~~~a~~v~~~f~~~~----~--~~~~~k~~~tG~Pvr~~~~~~---~~~~~~~~~~l~~ 183 (352)
T PRK12446 126 --------PGLANK-----IALRFASKIFVTFEEAA----K--HLPKEKVIYTGSPVREEVLKG---NREKGLAFLGFSR 183 (352)
T ss_pred --------ccHHHH-----HHHHhhCEEEEEccchh----h--hCCCCCeEEECCcCCcccccc---cchHHHHhcCCCC
Confidence 000111 12334555544322221 2 235578889999988765422 1335566788888
Q ss_pred CCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEE-EeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 309 NASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIV-AGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 309 ~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
+++.++++.|+.....=.+.+.+++..+.+ ++++++ +|.....+..... .++...+++. +++.++|++||++|.
T Consensus 184 ~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~---~~~vv~~~G~~~~~~~~~~~-~~~~~~~f~~-~~m~~~~~~adlvIs 258 (352)
T PRK12446 184 KKPVITIMGGSLGAKKINETVREALPELLL---KYQIVHLCGKGNLDDSLQNK-EGYRQFEYVH-GELPDILAITDFVIS 258 (352)
T ss_pred CCcEEEEECCccchHHHHHHHHHHHHhhcc---CcEEEEEeCCchHHHHHhhc-CCcEEecchh-hhHHHHHHhCCEEEE
Confidence 876777777776643323444455555532 355544 5654333323222 3445567762 579999999999995
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEecCCCCC----cc----ceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHH
Q 039338 388 PTLRPQGLDLTLMEAMMSGKPVMASRFPSI----KG----TIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRL 453 (493)
Q Consensus 388 ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~----~~----e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~ 453 (493)
+ +-++++.|++++|+|.|....... .+ +.+.+.+.|..+.. +++.+.+++.++++| ++.+
T Consensus 259 ---r--~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~-~~~~ 329 (352)
T PRK12446 259 ---R--AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN-NEKY 329 (352)
T ss_pred ---C--CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC-HHHH
Confidence 2 346799999999999999865321 11 13444566666643 789999999999987 6554
No 101
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.55 E-value=1.7e-12 Score=127.20 Aligned_cols=186 Identities=10% Similarity=0.122 Sum_probs=139.0
Q ss_pred ccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHHHH
Q 039338 251 NKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLH 330 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll 330 (493)
.+.|+||+.++...+.+.++++ +..++.++|-|+-.. .... ...+..+++++. +..+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i~~---~~~~------------~r~~~~~l~~t~-------s~~I 294 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYLYP---FKKD------------NKYRKQALILTN-------SDQI 294 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEEEe---eccc------------cCCcccEEEECC-------HHHH
Confidence 6789999999988888888775 356778888887522 1111 011123445552 8899
Q ss_pred HHHHHHHhhCCCeEEEEEeCCCc-HHHHhhhc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC
Q 039338 331 EAFSKLMVKYPDVYLIVAGSGPW-EQRYKDFG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK 407 (493)
Q Consensus 331 ~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~ 407 (493)
+++..+.++.|+++|.| |.+.. ...+.++. ++|+..+.+...++.++|..||+++..+. +|++++++.||+..|+
T Consensus 295 ~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~-~e~~~~al~eA~~~G~ 372 (438)
T TIGR02919 295 EHLEEIVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINH-GNEILNAVRRAFEYNL 372 (438)
T ss_pred HHHHHHHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccc-cccHHHHHHHHHHcCC
Confidence 99999999999999999 76544 44454433 56555555555789999999999999994 6999999999999999
Q ss_pred cEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 039338 408 PVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAA 465 (493)
Q Consensus 408 PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 465 (493)
||++.+....+.+++.+ |.+++. ++++++++|.+++.+ ++.+++.-..-++.+-
T Consensus 373 pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d-~~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 373 LILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND-PNQFRELLEQQREHAN 427 (438)
T ss_pred cEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhc
Confidence 99999877555456655 889998 999999999999999 7666655555555443
No 102
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.50 E-value=3.7e-12 Score=124.80 Aligned_cols=243 Identities=16% Similarity=0.194 Sum_probs=145.7
Q ss_pred HHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCccc-------chh----hhh----hhC
Q 039338 241 LKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSL-------GQS----FRS----RIG 305 (493)
Q Consensus 241 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~-------~~~----~r~----~~~ 305 (493)
.+...|+.....||.+.++|+-.+......++-. .=.|+|||++.+.+....+- +++ ++. .+.
T Consensus 210 ~k~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~--pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~d 287 (633)
T PF05693_consen 210 HKHSIERAAAHYADVFTTVSEITAKEAEHLLKRK--PDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYD 287 (633)
T ss_dssp HHHHHHHHHHHHSSEEEESSHHHHHHHHHHHSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---
T ss_pred HHHHHHHHHHHhcCeeeehhhhHHHHHHHHhCCC--CCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4455566778899999999999999888766533 23688999998877654321 111 111 134
Q ss_pred CCCCCcEEEEEecccc-cccChHHHHHHHHHHHhh----CCCeE---EEEEeCCC----------------cH-------
Q 039338 306 IPKNASLVLGVAGRLV-KDKGHPLLHEAFSKLMVK----YPDVY---LIVAGSGP----------------WE------- 354 (493)
Q Consensus 306 i~~~~~~~i~~~Gr~~-~~Kg~~~ll~a~~~l~~~----~~~~~---l~i~G~g~----------------~~------- 354 (493)
++.++.+.|...||.+ ..||+|.+++|+.+|... ..+.. |+++-... .+
T Consensus 288 fd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~ 367 (633)
T PF05693_consen 288 FDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQ 367 (633)
T ss_dssp S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHH
Confidence 4455668888999997 589999999999998542 23333 33332110 00
Q ss_pred H----------------------------HHh--------------------------------hhc------Cc--EEE
Q 039338 355 Q----------------------------RYK--------------------------------DFG------HQ--VLV 366 (493)
Q Consensus 355 ~----------------------------~~~--------------------------------~l~------~~--V~~ 366 (493)
+ .++ +++ ++ |+|
T Consensus 368 ~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF 447 (633)
T PF05693_consen 368 EKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIF 447 (633)
T ss_dssp HHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE
T ss_pred HHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEE
Confidence 0 000 001 33 455
Q ss_pred ecCC-C------HHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceee-----eCcceEEECC-
Q 039338 367 MGSM-S------PAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVV-----DDEFGFMFAP- 433 (493)
Q Consensus 367 ~g~~-~------~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~-----~~~~G~~~~~- 433 (493)
.+.. + .-++.+++..||+.|+||. +|++|.|.+|+.++|+|.|+|+..|.. ..+. ....|+.+-.
T Consensus 448 ~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSY-YEPWGYTPlE~~a~gVPsITTnLsGFG-~~~~~~~~~~~~~GV~VvdR 525 (633)
T PF05693_consen 448 HPEYLSGTDGIFNLDYYDFVRGCDLGVFPSY-YEPWGYTPLECTAFGVPSITTNLSGFG-CWMQEHIEDPEEYGVYVVDR 525 (633)
T ss_dssp --S---TTSSSS-S-HHHHHHHSSEEEE--S-SBSS-HHHHHHHHTT--EEEETTBHHH-HHHHTTS-HHGGGTEEEE-S
T ss_pred eeccccCCCCCCCCCHHHHhccCceeeeccc-cccccCChHHHhhcCCceeeccchhHH-HHHHHhhccCcCCcEEEEeC
Confidence 4421 1 2478899999999999996 599999999999999999999987764 2222 2345665532
Q ss_pred ---C----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 434 ---N----VESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 434 ---d----~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
+ ++++++.|.++...++..+..++.++.+..+ ..+|+++...|.+.|+..+.+.
T Consensus 526 ~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~-~~dW~~~~~yY~~Ay~~AL~~a 586 (633)
T PF05693_consen 526 RDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSD-LADWKNFGKYYEKAYDLALRRA 586 (633)
T ss_dssp SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGG-GGBHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHhc
Confidence 3 4566666777766656666666666655554 4899999999999999877654
No 103
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.48 E-value=6.7e-12 Score=122.47 Aligned_cols=276 Identities=14% Similarity=0.156 Sum_probs=190.5
Q ss_pred CcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
-|+|.+|++. ++.++....| ++...+|-+++. ++++..+. .-...+ +-+-.+
T Consensus 124 ~D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs---~eifr~LP-------------~r~eil-------~glL~a 180 (474)
T PRK10117 124 DDIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPT---PEIFNALP-------------PHDELL-------EQLCDY 180 (474)
T ss_pred CCEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCC---hHHHhhCC-------------ChHHHH-------HHHHhC
Confidence 4899999874 4444544433 377788876543 23333221 111111 234467
Q ss_pred CeEEEcChhHHHHHHHH----hCCC------------CCcEEEecCCccCCCccCCcc-----cchhhhhhhCCCCCCcE
Q 039338 254 AHHVAISDSCGEMLRDV----YQIP------------SERVHVILNGINENEYGVDLS-----LGQSFRSRIGIPKNASL 312 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~----~~~~------------~~~v~vi~ngvd~~~~~~~~~-----~~~~~r~~~~i~~~~~~ 312 (493)
|.|=+-+...++.+.+. .|.. .-++.+.|-|||.+.|..... ....++++++ ++ .
T Consensus 181 DlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~---~~-~ 256 (474)
T PRK10117 181 DLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELK---NV-Q 256 (474)
T ss_pred ccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcC---CC-e
Confidence 88888887776655431 1211 123667788999887743211 1233455543 33 4
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCC----eEEEEEeCCC-----c----HHHHhhh--------c----CcEE-E
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPD----VYLIVAGSGP-----W----EQRYKDF--------G----HQVL-V 366 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~-----~----~~~~~~l--------~----~~V~-~ 366 (493)
+|+-+.|++..||+..=++|+.++.+++|+ +.|+-+.... . +..++++ + ..|. +
T Consensus 257 lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~ 336 (474)
T PRK10117 257 NIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYL 336 (474)
T ss_pred EEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEe
Confidence 666899999999999999999999998874 5566554321 1 1112221 1 1244 3
Q ss_pred ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC-----cEEecCCCCCccceeeeCcceEEECC-CHHHHHH
Q 039338 367 MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK-----PVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHK 440 (493)
Q Consensus 367 ~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~-----PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~ 440 (493)
...++.+++..+|+.||+++.++++ +|..++..|+.+|.. ++|.|...|..++ +. .+++++| |.+++++
T Consensus 337 ~~~~~~~~l~alyr~ADv~lVTplR-DGMNLVAkEyva~q~~~~~GvLILSefAGaA~~-L~---~AllVNP~d~~~~A~ 411 (474)
T PRK10117 337 NQHFDRKLLMKIFRYSDVGLVTPLR-DGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE-LT---SALIVNPYDRDEVAA 411 (474)
T ss_pred cCCCCHHHHHHHHHhccEEEecccc-cccccccchheeeecCCCCccEEEecccchHHH-hC---CCeEECCCCHHHHHH
Confidence 4567999999999999999999987 999999999999976 3788888888743 32 4889999 9999999
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhc
Q 039338 441 TLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 441 ~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~~ 487 (493)
+|.+++..+.+++++..+..++.+.. +|....++.+.+-+..+...
T Consensus 412 Ai~~AL~Mp~~Er~~R~~~l~~~v~~-~dv~~W~~~fL~~L~~~~~~ 457 (474)
T PRK10117 412 ALDRALTMPLAERISRHAEMLDVIVK-NDINHWQECFISDLKQIVPR 457 (474)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHhhhc
Confidence 99999999888888888888888887 69999999988888776433
No 104
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.46 E-value=5.6e-12 Score=121.12 Aligned_cols=293 Identities=19% Similarity=0.177 Sum_probs=165.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc--
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW-- 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (493)
|||++.... ..-|.-.+...++++| +||+|++++..... ......... ...+.+....... ..
T Consensus 1 MkIl~~v~~-----~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~~-~~~~ 65 (318)
T PF13528_consen 1 MKILFYVQG-----HGLGHASRCLALARAL--RGHEVTFITSGPAP--EFLKPRFPV-----REIPGLGPIQENG-RLDR 65 (318)
T ss_pred CEEEEEeCC-----CCcCHHHHHHHHHHHH--ccCceEEEEcCCcH--HHhccccCE-----EEccCceEeccCC-ccch
Confidence 899999974 4678888899999999 48999999987543 111110000 0011111111110 11
Q ss_pred ------------ccccchHHHHHHhcCCCCcEEEeCccchhHHhh--hccCcEEEEeccchhhhhhhhhhhhhhcCCCCc
Q 039338 162 ------------RYSKGWEQFDEENQREPFDVVHSESVALPHWLA--RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEP 227 (493)
Q Consensus 162 ------------~~~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~~--~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 227 (493)
......+...+.+++.+||+|++....+..+.+ .++| .+...|..+........ .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP-~i~i~~~~~~~~~~~~~----------~ 134 (318)
T PF13528_consen 66 WKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIP-VIVISNQYWFLHPNFWL----------P 134 (318)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCC-EEEEEehHHcccccCCc----------c
Confidence 112233445556678899999998765544433 4567 66555544322100000 0
Q ss_pred cchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCC
Q 039338 228 MSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIP 307 (493)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~ 307 (493)
. ...+...+.+...+ ..+..++..+..+.... .. ...++.+++..+........ +
T Consensus 135 ~----~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~------~~~~~~~~~p~~~~~~~~~~-------------~ 189 (318)
T PF13528_consen 135 W----DQDFGRLIERYIDR-YHFPPADRRLALSFYPP-LP------PFFRVPFVGPIIRPEIRELP-------------P 189 (318)
T ss_pred h----hhhHHHHHHHhhhh-ccCCcccceecCCcccc-cc------ccccccccCchhcccccccC-------------C
Confidence 0 01122222222211 12444555555444311 00 11123333333322211111 1
Q ss_pred CCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 308 KNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
.+++.+++++|..+.. .++++++.+ ++.+++++|...... ..+||.+.++.. .++.+++++||++|.
T Consensus 190 ~~~~~iLv~~gg~~~~----~~~~~l~~~----~~~~~~v~g~~~~~~----~~~ni~~~~~~~-~~~~~~m~~ad~vIs 256 (318)
T PF13528_consen 190 EDEPKILVYFGGGGPG----DLIEALKAL----PDYQFIVFGPNAADP----RPGNIHVRPFST-PDFAELMAAADLVIS 256 (318)
T ss_pred CCCCEEEEEeCCCcHH----HHHHHHHhC----CCCeEEEEcCCcccc----cCCCEEEeecCh-HHHHHHHHhCCEEEE
Confidence 2334788899987654 556666665 578888888653111 158999888753 789999999999996
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEecCCCCCccc-----eeeeCcceEEECC---CHHHHHHHHHHH
Q 039338 388 PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGT-----IVVDDEFGFMFAP---NVESLHKTLEAA 445 (493)
Q Consensus 388 ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e-----~v~~~~~G~~~~~---d~~~l~~~i~~l 445 (493)
.. |+ +++.||+++|+|+|+....+..|+ .+.+.+.|..++. +++.|.++|+++
T Consensus 257 ~~----G~-~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 257 KG----GY-TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CC----CH-HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 32 32 379999999999999987665532 3455667777653 788888888754
No 105
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.46 E-value=2.6e-11 Score=117.73 Aligned_cols=312 Identities=13% Similarity=0.127 Sum_probs=181.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC-CCEEEEEecCCCCCCCCC----CccccCCCCCCCCCCceEeecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARR-GHRVHIFTSPVDNINSPS----ISHQENDDGSNNKYPLLHFHEGEA 158 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
|||++|+..=| ... -+..+.++|.+. ++++.++.+..+. +.. ...... .++... ..+.......
T Consensus 1 ~ki~~v~GtRp------e~i-klapv~~~l~~~~~~~~~lv~tGqH~--~~~~g~~~~~~~~-~~~~~~-~~~~~~~~~~ 69 (365)
T TIGR03568 1 KKICVVTGTRA------DYG-LLRPLLKALQDDPDLELQLIVTGMHL--SPEYGNTVNEIEK-DGFDID-EKIEILLDSD 69 (365)
T ss_pred CeEEEEEecCh------hHH-HHHHHHHHHhcCCCCcEEEEEeCCCC--ChhhccHHHHHHH-cCCCCC-CccccccCCC
Confidence 68999987432 222 377889999874 7899888876554 211 111000 001110 1122111111
Q ss_pred --C--ccccccchHHHHHHhcCCCCcEEEeCccc------hhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCcc
Q 039338 159 --D--KWRYSKGWEQFDEENQREPFDVVHSESVA------LPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPM 228 (493)
Q Consensus 159 --~--~~~~~~~~~~~~~~~~~~~~DiI~~~~~~------~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ 228 (493)
. .-........+.+.+.+.+||+|++++-. ..+....++| ++ .+|+-... .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IP-v~-HveaG~rs-------------~~--- 131 (365)
T TIGR03568 70 SNAGMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIP-IA-HIHGGEVT-------------EG--- 131 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCc-EE-EEECCccC-------------CC---
Confidence 1 11233455677777888999999998732 2233345667 44 44442100 00
Q ss_pred chHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecC-CccCCCccCCcccchhhhhhhCCC
Q 039338 229 SLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILN-GINENEYGVDLSLGQSFRSRIGIP 307 (493)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~n-gvd~~~~~~~~~~~~~~r~~~~i~ 307 (493)
.......+.. -+-++..++.++..++.+.+ -|.+..++.++.| ++|.-.... ......+.+++|++
T Consensus 132 ------~~eE~~r~~i-----~~la~l~f~~t~~~~~~L~~-eg~~~~~i~~tG~~~iD~l~~~~-~~~~~~~~~~lgl~ 198 (365)
T TIGR03568 132 ------AIDESIRHAI-----TKLSHLHFVATEEYRQRVIQ-MGEDPDRVFNVGSPGLDNILSLD-LLSKEELEEKLGID 198 (365)
T ss_pred ------CchHHHHHHH-----HHHHhhccCCCHHHHHHHHH-cCCCCCcEEEECCcHHHHHHhhh-ccCHHHHHHHhCCC
Confidence 0001111111 12345667888998888877 5888888998877 444322211 12345777888987
Q ss_pred CCCcEEEEEecccc--cccChHHHHHHHHHHHhhCCCeEEEEEeCCC-c---HHHHhhh---cCcEEEecCCCHHHHHHH
Q 039338 308 KNASLVLGVAGRLV--KDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP-W---EQRYKDF---GHQVLVMGSMSPAELRAF 378 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~--~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-~---~~~~~~l---~~~V~~~g~~~~~~~~~~ 378 (493)
.+++++++.+-+-. .....+.+.+.++.+.+...++.++.-..++ . .+.++++ .++|.+.+.++..++..+
T Consensus 199 ~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 199 LDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 55446555554432 2333344444444444433344332212222 1 2333433 368999999999999999
Q ss_pred HHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 379 YNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 379 ~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
++.||++|-.| .| .+.||.++|+|+|+.. .-+ |.+..+.+.+.+..|++++.+++.+++
T Consensus 279 l~~a~~vitdS-----Sg-gi~EA~~lg~Pvv~l~--~R~-e~~~~g~nvl~vg~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 279 LKNADAVIGNS-----SS-GIIEAPSFGVPTINIG--TRQ-KGRLRADSVIDVDPDKEEIVKAIEKLL 337 (365)
T ss_pred HHhCCEEEEcC-----hh-HHHhhhhcCCCEEeec--CCc-hhhhhcCeEEEeCCCHHHHHHHHHHHh
Confidence 99999999533 12 3389999999999654 444 777778888878669999999999954
No 106
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.46 E-value=1.5e-11 Score=121.63 Aligned_cols=274 Identities=20% Similarity=0.273 Sum_probs=160.8
Q ss_pred CCcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhcc
Q 039338 178 PFDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNK 252 (493)
Q Consensus 178 ~~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (493)
.-|+|.+|++. ++.++.+..| ++...+|-+++. ++++..+. .....+ +-+-.
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs---~e~fr~lP-------------~r~eiL-------~glL~ 197 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPS---SEIFRCLP-------------WREEIL-------RGLLG 197 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S-------HHHHTTST-------------THHHHH-------HHHTT
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCC---HHHHhhCC-------------cHHHHH-------HHhhc
Confidence 56899999873 5555555544 377778876543 23333221 111112 33457
Q ss_pred CCeEEEcChhHHHHHHH----HhCCC-------------CCcEEEecCCccCCCccCCc------ccchhhhhhhCCCCC
Q 039338 253 YAHHVAISDSCGEMLRD----VYQIP-------------SERVHVILNGINENEYGVDL------SLGQSFRSRIGIPKN 309 (493)
Q Consensus 253 ~d~ii~~S~~~~~~~~~----~~~~~-------------~~~v~vi~ngvd~~~~~~~~------~~~~~~r~~~~i~~~ 309 (493)
||.|-+.+...++.+.. .+|.. .-++.+.|-|||.+.+.... .....++++++ +
T Consensus 198 aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~---~ 274 (474)
T PF00982_consen 198 ADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK---G 274 (474)
T ss_dssp SSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT---T
T ss_pred CCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC---C
Confidence 99999999888776543 23321 12367778899987764311 12344556553 3
Q ss_pred CcEEEEEecccccccChHHHHHHHHHHHhhCC----CeEEEEEeCC---Cc------HHHHhhh--------c----CcE
Q 039338 310 ASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYP----DVYLIVAGSG---PW------EQRYKDF--------G----HQV 364 (493)
Q Consensus 310 ~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~----~~~l~i~G~g---~~------~~~~~~l--------~----~~V 364 (493)
+..+|+-+.|++..||+..=+.|+.++.+++| ++.|+-++.. .. .+.+.++ + ..|
T Consensus 275 ~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI 354 (474)
T PF00982_consen 275 KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPI 354 (474)
T ss_dssp -SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SE
T ss_pred CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeE
Confidence 22567799999999999999999999999876 4666656531 11 1112111 1 124
Q ss_pred -EEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCc----EEecCCCCCccceeeeCcceEEECC-CHHHH
Q 039338 365 -LVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKP----VMASRFPSIKGTIVVDDEFGFMFAP-NVESL 438 (493)
Q Consensus 365 -~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~P----vI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l 438 (493)
.+.+.++.+++..+|+.||+++.+|.+ +|..++..|+.+|... +|.|...|.. +.+ ++..++++| |++++
T Consensus 355 ~~~~~~~~~~~~~aly~~aDv~lvTslr-DGmNLva~Eyva~q~~~~GvLiLSefaGaa-~~L--~~~al~VNP~d~~~~ 430 (474)
T PF00982_consen 355 IYIYRSLSFEELLALYRAADVALVTSLR-DGMNLVAKEYVACQDDNPGVLILSEFAGAA-EQL--SEAALLVNPWDIEEV 430 (474)
T ss_dssp EEE-S---HHHHHHHHHH-SEEEE--SS-BS--HHHHHHHHHS-TS--EEEEETTBGGG-GT---TTS-EEE-TT-HHHH
T ss_pred EEEecCCCHHHHHHHHHhhhhEEecchh-hccCCcceEEEEEecCCCCceEeeccCCHH-HHc--CCccEEECCCChHHH
Confidence 455678999999999999999999987 9999999999999875 7778887877 333 223489999 99999
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 439 HKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 439 ~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
+++|.+++..++++++..-+..++.+.+ ++....++.+.+-++
T Consensus 431 A~ai~~AL~M~~~Er~~r~~~~~~~v~~-~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 431 ADAIHEALTMPPEERKERHARLREYVRE-HDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhHh-CCHHHHHHHHHHHhh
Confidence 9999999999788888888888888887 688888887766543
No 107
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.45 E-value=6.8e-13 Score=113.49 Aligned_cols=151 Identities=30% Similarity=0.389 Sum_probs=83.2
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCC--CccccccchHHHHHHh--c
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEA--DKWRYSKGWEQFDEEN--Q 175 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~ 175 (493)
||+++++.+|+++|+++||+|++++..... ...... .....+....... ..+........+.+.+ +
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 70 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDP--EDDEEE--------EDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAAR 70 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---G--GG-SEE--------ETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHC
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCC--cccccc--------cCCceEEeccCCccchhhhhHHHHHHHHHHHhhh
Confidence 899999999999999999999999987766 211111 1122222222211 2233344556677777 8
Q ss_pred CCCCcEEEeCccc--hhHHhh---hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhh
Q 039338 176 REPFDVVHSESVA--LPHWLA---RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFF 250 (493)
Q Consensus 176 ~~~~DiI~~~~~~--~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (493)
+.+||+||++++. +..++. .++| ++.++|+...... ..+...+...+ ++..+
T Consensus 71 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~-----------------~~~~~~~~~~~-----~~~~~ 127 (160)
T PF13579_consen 71 RERPDVVHAHSPTAGLVAALARRRRGIP-LVVTVHGTLFRRG-----------------SRWKRRLYRWL-----ERRLL 127 (160)
T ss_dssp T---SEEEEEHHHHHHHHHHHHHHHT---EEEE-SS-T-----------------------HHHHHHHHH-----HHHHH
T ss_pred ccCCeEEEecccchhHHHHHHHHccCCc-EEEEECCCchhhc-----------------cchhhHHHHHH-----HHHHH
Confidence 8999999999852 122222 3557 9999998432110 00111222222 44778
Q ss_pred ccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCC
Q 039338 251 NKYAHHVAISDSCGEMLRDVYQIPSERVHVILNG 284 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ng 284 (493)
+.+|.++++|+.+++.+.+ +|++.+++.|||||
T Consensus 128 ~~ad~vi~~S~~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 128 RRADRVIVVSEAMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HH-SEEEESSHHHHHHHHH-H---GGGEEE----
T ss_pred hcCCEEEECCHHHHHHHHH-hCCCCCcEEEeCcC
Confidence 8999999999999999999 89999999999997
No 108
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.44 E-value=5e-13 Score=102.65 Aligned_cols=92 Identities=23% Similarity=0.352 Sum_probs=84.3
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 039338 384 IFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQY 463 (493)
Q Consensus 384 v~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 463 (493)
+.++|+. ..+++.+++|+|+||+|||+.+.++.. +++.++..++.++ |++++.+++..+++| ++.++++++++++.
T Consensus 1 i~Ln~~~-~~~~~~r~~E~~a~G~~vi~~~~~~~~-~~~~~~~~~~~~~-~~~el~~~i~~ll~~-~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 1 INLNPSR-SDGPNMRIFEAMACGTPVISDDSPGLR-EIFEDGEHIITYN-DPEELAEKIEYLLEN-PEERRRIAKNARER 76 (92)
T ss_pred CEeeCCC-CCCCchHHHHHHHCCCeEEECChHHHH-HHcCCCCeEEEEC-CHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
Confidence 3577875 489999999999999999999998888 7888888999999 999999999999999 99999999999999
Q ss_pred HHHhcCHHHHHHHHHH
Q 039338 464 AASMFTANKMALAYER 479 (493)
Q Consensus 464 ~~~~fs~~~~~~~~~~ 479 (493)
++++|+|++.++++.+
T Consensus 77 v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 77 VLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHhCCHHHHHHHHHC
Confidence 9999999999998863
No 109
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.43 E-value=3.7e-11 Score=117.78 Aligned_cols=332 Identities=10% Similarity=-0.037 Sum_probs=187.4
Q ss_pred CCCchHHHHHHHHHHHHh--CCCEEE---EEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC-CCccc---------
Q 039338 98 TPGGMERHAHTLHVALAR--RGHRVH---IFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE-ADKWR--------- 162 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~--~G~~V~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------- 162 (493)
+.+|-......++++|.+ .|++|. ++...... ..... ...+ ....+... .....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~-e~~~i---------p~~g-~~~~~~sgg~~~~~~~~~~~~~~ 73 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY-QNLGI---------PIIG-PTKELPSGGFSYQSLRGLLRDLR 73 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH-hhCCC---------ceeC-CCCCCCCCCccCCCHHHHHHHHH
Confidence 556777778899999998 699999 66655433 11111 1111 11111111 00111
Q ss_pred --cccchHHHHHHhcCC--CCcEEEeCccchhH--HhhhccCcEEEEeccchhhh------hhhhhhhhhhcCCCCccch
Q 039338 163 --YSKGWEQFDEENQRE--PFDVVHSESVALPH--WLARNVTNLAVSWHGIALES------LQSGIFQDLTRKPLEPMSL 230 (493)
Q Consensus 163 --~~~~~~~~~~~~~~~--~~DiI~~~~~~~~~--~~~~~~p~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~~ 230 (493)
......+-.+++++. +||+|+..+-..+. ....++|-+++-.|.-.... ..++.+..+.+....
T Consensus 74 ~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~---- 149 (396)
T TIGR03492 74 AGLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYL---- 149 (396)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccC----
Confidence 111122223334555 99999988654333 33346674554556432220 111111111111000
Q ss_pred HhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCC
Q 039338 231 AFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNA 310 (493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~ 310 (493)
.+. ..+ -.-+.|+.+.+..+...+.+.+ .|+ ++.++.|++-........ . +++++.
T Consensus 150 ----p~e--~n~-----l~~~~a~~v~~~~~~t~~~l~~-~g~---k~~~vGnPv~d~l~~~~~-------~--~l~~~~ 205 (396)
T TIGR03492 150 ----PWE--RWL-----MRSRRCLAVFVRDRLTARDLRR-QGV---RASYLGNPMMDGLEPPER-------K--PLLTGR 205 (396)
T ss_pred ----HHH--HHH-----hhchhhCEEeCCCHHHHHHHHH-CCC---eEEEeCcCHHhcCccccc-------c--ccCCCC
Confidence 000 011 2235788888888888888876 454 789999987554321111 0 455555
Q ss_pred cEEEEEeccccc--ccChHHHHHHHHHHHhhCCCeEEEEEe-CCCcHHHHhh----hc----------------CcEEEe
Q 039338 311 SLVLGVAGRLVK--DKGHPLLHEAFSKLMVKYPDVYLIVAG-SGPWEQRYKD----FG----------------HQVLVM 367 (493)
Q Consensus 311 ~~~i~~~Gr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G-~g~~~~~~~~----l~----------------~~V~~~ 367 (493)
+.+++..|+-.. .+++..+++++..+.++ +++++++.- .+...+.+++ .+ +++.+.
T Consensus 206 ~~lllLpGSR~ae~~~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~ 284 (396)
T TIGR03492 206 FRIALLPGSRPPEAYRNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVL 284 (396)
T ss_pred CEEEEECCCCHHHHHccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEE
Confidence 566667776533 46778999999999766 678876653 3333333322 11 125555
Q ss_pred cCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc--ceeeeC----cceEEECC-CHHHHHH
Q 039338 368 GSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG--TIVVDD----EFGFMFAP-NVESLHK 440 (493)
Q Consensus 368 g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~--e~v~~~----~~G~~~~~-d~~~l~~ 440 (493)
.+. .++.++|++||++|..| |.+..|++++|+|+|....++... .+.+.. +.+..+.. +++.+++
T Consensus 285 ~~~--~~~~~~l~~ADlvI~rS------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~ 356 (396)
T TIGR03492 285 LGR--GAFAEILHWADLGIAMA------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQ 356 (396)
T ss_pred ech--HhHHHHHHhCCEEEECc------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHH
Confidence 554 68999999999999754 345699999999999987433210 111221 23444444 8899999
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 039338 441 TLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYE 478 (493)
Q Consensus 441 ~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 478 (493)
++.++++| ++.+++|.+++++...+....+++++.+.
T Consensus 357 ~l~~ll~d-~~~~~~~~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 357 VVRQLLAD-PELLERCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred HHHHHHcC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999998 88888887555444433334455554443
No 110
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=6.9e-10 Score=104.52 Aligned_cols=312 Identities=17% Similarity=0.140 Sum_probs=192.1
Q ss_pred chHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCCC
Q 039338 101 GMERHAHTLHVALARR--GHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQREP 178 (493)
Q Consensus 101 G~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (493)
|-...+..|.++|.++ ++.+.+-+..... ...... .........+.+. +. .....+.++..+
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg--~e~a~~------~~~~~v~h~YlP~-----D~---~~~v~rFl~~~~ 123 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTG--AERAAA------LFGDSVIHQYLPL-----DL---PIAVRRFLRKWR 123 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccH--HHHHHH------HcCCCeEEEecCc-----Cc---hHHHHHHHHhcC
Confidence 4466788999999998 6666665544333 111111 0011112222221 11 244555566778
Q ss_pred CcEEEeCcc--c---hhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESV--A---LPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~--~---~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
||++++... + +.....+++| .+..---+...+ ..-+.++.++. +.++++.
T Consensus 124 P~l~Ii~EtElWPnli~e~~~~~~p-~~LvNaRLS~rS----------------------~~~y~k~~~~~--~~~~~~i 178 (419)
T COG1519 124 PKLLIIMETELWPNLINELKRRGIP-LVLVNARLSDRS----------------------FARYAKLKFLA--RLLFKNI 178 (419)
T ss_pred CCEEEEEeccccHHHHHHHHHcCCC-EEEEeeeechhh----------------------hHHHHHHHHHH--HHHHHhc
Confidence 998776422 2 2222345667 443332221111 01112222222 2668899
Q ss_pred CeEEEcChhHHHHHHHHhCCCCCcEEEecCC-ccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChHHHHHH
Q 039338 254 AHHVAISDSCGEMLRDVYQIPSERVHVILNG-INENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEA 332 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ng-vd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a 332 (493)
|.|++-|+..++.+.+ .|.++ +.+..|- .|.+.-..........|..++.+ . .+++.++.. ...-+.++++
T Consensus 179 ~li~aQse~D~~Rf~~-LGa~~--v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaSTH--~GEeei~l~~ 250 (419)
T COG1519 179 DLILAQSEEDAQRFRS-LGAKP--VVVTGNLKFDIEPPPQLAAELAALRRQLGGH--R-PVWVAASTH--EGEEEIILDA 250 (419)
T ss_pred ceeeecCHHHHHHHHh-cCCcc--eEEecceeecCCCChhhHHHHHHHHHhcCCC--C-ceEEEecCC--CchHHHHHHH
Confidence 9999999999999998 67643 6776662 22222112222345567777654 3 345466652 2334558899
Q ss_pred HHHHHhhCCCeEEEEEeCCCcHH-----HHhhhc---------------CcEEEecCCCHHHHHHHHHHcCEEEeC-CCC
Q 039338 333 FSKLMVKYPDVYLIVAGSGPWEQ-----RYKDFG---------------HQVLVMGSMSPAELRAFYNAIDIFVNP-TLR 391 (493)
Q Consensus 333 ~~~l~~~~~~~~l~i~G~g~~~~-----~~~~l~---------------~~V~~~g~~~~~~~~~~~~~adv~v~p-s~~ 391 (493)
++.+++++||..++++-.-+++- .+++.+ .+|.+...+ .|+..+|..+|+.++- |..
T Consensus 251 ~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv 328 (419)
T COG1519 251 HQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLV 328 (419)
T ss_pred HHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCccc
Confidence 99999999999999998755432 122211 366666676 6999999999998774 434
Q ss_pred CCCCChHHHHHHHcCCcEEecCC----CCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRF----PSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~----~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
+.| |--++|+.++|+|||.-.. ..+. +-+.+.+.|+.++ |.+.+.+++..++.| ++.+++|++++.+.+.++
T Consensus 329 ~~G-GHN~LEpa~~~~pvi~Gp~~~Nf~ei~-~~l~~~ga~~~v~-~~~~l~~~v~~l~~~-~~~r~~~~~~~~~~v~~~ 404 (419)
T COG1519 329 PIG-GHNPLEPAAFGTPVIFGPYTFNFSDIA-ERLLQAGAGLQVE-DADLLAKAVELLLAD-EDKREAYGRAGLEFLAQN 404 (419)
T ss_pred CCC-CCChhhHHHcCCCEEeCCccccHHHHH-HHHHhcCCeEEEC-CHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh
Confidence 344 7789999999999998642 2223 2344556788887 678888888888887 999999999999998774
No 111
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.42 E-value=4.9e-11 Score=123.56 Aligned_cols=231 Identities=19% Similarity=0.243 Sum_probs=164.0
Q ss_pred HhhccCCeEEEcChhHHHHHHHHh-----CCC--CCcEEEecCCccCCCcc-CC--------------------------
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVY-----QIP--SERVHVILNGINENEYG-VD-------------------------- 293 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~-----~~~--~~~v~vi~ngvd~~~~~-~~-------------------------- 293 (493)
..+..++.+.++|+-..+..++.+ |.+ ..++.-|-|||+...|. +.
T Consensus 347 laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~~~~g~~w~~~~~~~~~~~~~ 426 (778)
T cd04299 347 LALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYDRYLGGDWRERPTDPELWEAV 426 (778)
T ss_pred HHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHHHhcCcchhhccchHHHHhhh
Confidence 345678999999997754444422 222 34689999999998776 21
Q ss_pred ---ccc---------chh----hhhhh-----------------C--CCCCCcEEEEEecccccccChHHHHHHHHHHHh
Q 039338 294 ---LSL---------GQS----FRSRI-----------------G--IPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMV 338 (493)
Q Consensus 294 ---~~~---------~~~----~r~~~-----------------~--i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~ 338 (493)
++. +.. +++.+ + ++++. +++++++|+..+|+.++++..+.++.+
T Consensus 427 ~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~-ltigfarRfa~YKR~~Lil~dl~rl~~ 505 (778)
T cd04299 427 DDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNV-LTIGFARRFATYKRATLLLRDPERLKR 505 (778)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCc-cEEeeeecchhhhhHHHHHHHHHHHHH
Confidence 010 011 11111 2 23333 789999999999999999999888755
Q ss_pred hC----CCeEEEEEeCCCc-----HHHHh---hh------cCcEEEecCCCHHHHHHHHHHcCEEEeCCCC-CCCCChHH
Q 039338 339 KY----PDVYLIVAGSGPW-----EQRYK---DF------GHQVLVMGSMSPAELRAFYNAIDIFVNPTLR-PQGLDLTL 399 (493)
Q Consensus 339 ~~----~~~~l~i~G~g~~-----~~~~~---~l------~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~-~eg~~~~~ 399 (493)
-. .+++++++|.+.. ++.++ ++ ..+|.|+...+-+--..+++.||+.++||.+ .|.+|++-
T Consensus 506 il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSg 585 (778)
T cd04299 506 LLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSG 585 (778)
T ss_pred HhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccch
Confidence 11 3699999998641 12222 22 2589999888877777899999999999961 39999999
Q ss_pred HHHHHcCCcEEecCCCCCccceeeeCcceEEECC-------------CHHHHHHHHHHHHH----c-----CcHHHHHHH
Q 039338 400 MEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-------------NVESLHKTLEAAVS----E-----GPMRLAQRG 457 (493)
Q Consensus 400 ~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-------------d~~~l~~~i~~ll~----~-----~~~~~~~~~ 457 (493)
+-||.-|.+-+++--|... |.. ++.|||.+.+ |.++|-+.|++.+. + .+..+.+|.
T Consensus 586 MKA~~NG~LnlSvlDGww~-E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~ 663 (778)
T cd04299 586 MKAALNGGLNLSVLDGWWD-EGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMM 663 (778)
T ss_pred HHHHHcCCeeeecccCccc-ccc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 9999999999999888887 554 7899999975 24455566654333 2 145677777
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 458 EACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 458 ~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
+++.+.+...|||++++++|.+-|
T Consensus 664 k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 664 KHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHh
Confidence 777777777899999999996554
No 112
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.36 E-value=2.2e-10 Score=121.14 Aligned_cols=276 Identities=15% Similarity=0.196 Sum_probs=191.0
Q ss_pred cEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCC
Q 039338 180 DVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYA 254 (493)
Q Consensus 180 DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 254 (493)
|+|.+|.+. ++.++.+..| ++.+.+|-+++. ++++..+. .... -.+-+-.||
T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs---~eifr~LP-------------~r~e-------iL~glL~aD 259 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPS---SEIYKTLP-------------IREE-------LLRALLNSD 259 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCC---hHHHhhCC-------------cHHH-------HHHHHhcCC
Confidence 899999874 4555555444 377788876543 22332221 1111 113345789
Q ss_pred eEEEcChhHHHHHHH----HhCCC---------------CCcEEEecCCccCCCccCCcc------cchhhhhhhCCCCC
Q 039338 255 HHVAISDSCGEMLRD----VYQIP---------------SERVHVILNGINENEYGVDLS------LGQSFRSRIGIPKN 309 (493)
Q Consensus 255 ~ii~~S~~~~~~~~~----~~~~~---------------~~~v~vi~ngvd~~~~~~~~~------~~~~~r~~~~i~~~ 309 (493)
.|=+.+...+..+.+ ..|.. .-++.+.|-|||...+..... ....++++++ ..
T Consensus 260 lIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 337 (854)
T PLN02205 260 LIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFC--DQ 337 (854)
T ss_pred eEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhc--cC
Confidence 998888877776554 22321 123667788999887744221 1233445543 11
Q ss_pred CcEEEEEecccccccChHHHHHHHHHHHhhCCCe----EEEEEeC-----CCcHHHHh----hh--------c----CcE
Q 039338 310 ASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDV----YLIVAGS-----GPWEQRYK----DF--------G----HQV 364 (493)
Q Consensus 310 ~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~----~l~i~G~-----g~~~~~~~----~l--------~----~~V 364 (493)
++.+|+-+.|++..||+..=+.|+.++.+++|++ .|+-+.. ++..+.++ ++ + ..|
T Consensus 338 ~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv 417 (854)
T PLN02205 338 DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPI 417 (854)
T ss_pred CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 2367779999999999999999999999988854 4554442 12222121 11 1 235
Q ss_pred EEe-cCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC-------------------cEEecCCCCCccceeee
Q 039338 365 LVM-GSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK-------------------PVMASRFPSIKGTIVVD 424 (493)
Q Consensus 365 ~~~-g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~-------------------PvI~s~~~~~~~e~v~~ 424 (493)
.++ ..++.+++.++|+.||+++.++.+ +|..++..|+.+|.. .+|.|...|...++
T Consensus 418 ~~~~~~~~~~e~~aly~~ADv~lVT~lR-DGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L--- 493 (854)
T PLN02205 418 VLIDAPLKFYERVAYYVVAECCLVTAVR-DGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL--- 493 (854)
T ss_pred EEEecCCCHHHHHHHHHhccEEEecccc-ccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh---
Confidence 554 678999999999999999999988 999999999999864 36778777766333
Q ss_pred CcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 039338 425 DEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCIKN 486 (493)
Q Consensus 425 ~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~ 486 (493)
...+.++| |+++++++|.+++..+.++++..-++.++++.. ++....++.+.+-++...+
T Consensus 494 -~~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~-~d~~~W~~~fl~~l~~~~~ 554 (854)
T PLN02205 494 -SGAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVST-HDVGYWARSFLQDLERTCR 554 (854)
T ss_pred -CcCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHH
Confidence 24799999 999999999999999878888888888888877 6988888888777766543
No 113
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=3.4e-10 Score=110.05 Aligned_cols=273 Identities=18% Similarity=0.228 Sum_probs=187.9
Q ss_pred CcEEEeCccc---hhHHhhhccC--cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 179 FDVVHSESVA---LPHWLARNVT--NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 179 ~DiI~~~~~~---~~~~~~~~~p--~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
=|+|.+|.+. ++..+...+| ++...+|-+++. ++++..+ ....+-..-+-.|
T Consensus 148 gDiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPs---sEvfr~l--------------------P~r~eIl~gll~~ 204 (486)
T COG0380 148 GDIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPS---SEVFRCL--------------------PWREEILEGLLGA 204 (486)
T ss_pred CCEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCC---HHHHhhC--------------------chHHHHHHHhhcC
Confidence 3999999874 4445555554 367777866543 2333332 1111111334578
Q ss_pred CeEEEcChhHHHHHHHHh----C-------------CCCCcEEEecCCccCCCccCCccc------chhhhhhhCCCCCC
Q 039338 254 AHHVAISDSCGEMLRDVY----Q-------------IPSERVHVILNGINENEYGVDLSL------GQSFRSRIGIPKNA 310 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~~----~-------------~~~~~v~vi~ngvd~~~~~~~~~~------~~~~r~~~~i~~~~ 310 (493)
|.|-+.++..+..+.+.. + -...++..+|-|+|+..+...... ..++++.++ .+.
T Consensus 205 dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~ 282 (486)
T COG0380 205 DLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNK 282 (486)
T ss_pred CeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCc
Confidence 888888887776554321 1 011457778999999877543211 233444443 223
Q ss_pred cEEEEEecccccccChHHHHHHHHHHHhhCC----CeEEEEEeCCC---cHH------HHhhh--------c----CcEE
Q 039338 311 SLVLGVAGRLVKDKGHPLLHEAFSKLMVKYP----DVYLIVAGSGP---WEQ------RYKDF--------G----HQVL 365 (493)
Q Consensus 311 ~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~----~~~l~i~G~g~---~~~------~~~~l--------~----~~V~ 365 (493)
.+|+.+.|++..||+..=+.|+.++.+++| ++.++-++... ..+ .++++ + ..|.
T Consensus 283 -kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 283 -KLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred -eEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 567789999999999999999999998886 45565555421 111 11111 1 2344
Q ss_pred E-ecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC----cEEecCCCCCccceeeeCcceEEECC-CHHHHH
Q 039338 366 V-MGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK----PVMASRFPSIKGTIVVDDEFGFMFAP-NVESLH 439 (493)
Q Consensus 366 ~-~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~----PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~ 439 (493)
+ .-.++.+++..+|..||+++.++++ +|..++..|+.+|.- +.|.|...|...+ +. ..++++| |.++++
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplr-DGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~-L~---~AliVNP~d~~~va 436 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLR-DGMNLVAKEYVAAQRDKPGVLILSEFAGAASE-LR---DALIVNPWDTKEVA 436 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeecccc-ccccHHHHHHHHhhcCCCCcEEEeccccchhh-hc---cCEeECCCChHHHH
Confidence 4 4458999999999999999999987 999999999999854 7788888777633 32 2899999 999999
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 039338 440 KTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAYERLFLC 483 (493)
Q Consensus 440 ~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 483 (493)
++|.+.+..+.+++++.-+..++.+.+ ++....+..+.+-+..
T Consensus 437 ~ai~~AL~m~~eEr~~r~~~~~~~v~~-~d~~~W~~~fl~~la~ 479 (486)
T COG0380 437 DAIKRALTMSLEERKERHEKLLKQVLT-HDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 999999999888888888888888877 6888888887666554
No 114
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=2.6e-10 Score=106.47 Aligned_cols=354 Identities=14% Similarity=0.128 Sum_probs=212.7
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC-CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRG-HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEAD 159 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (493)
+..|||++|...=|. -.-+..+++++.+.+ .+..|+.+.... +....+..-.. .....+.+......++
T Consensus 1 m~~~Kv~~I~GTRPE-------~iKmapli~~~~~~~~~~~~vi~TGQH~-d~em~~~~le~--~~i~~pdy~L~i~~~~ 70 (383)
T COG0381 1 MKMLKVLTIFGTRPE-------AIKMAPLVKALEKDPDFELIVIHTGQHR-DYEMLDQVLEL--FGIRKPDYDLNIMKPG 70 (383)
T ss_pred CCceEEEEEEecCHH-------HHHHhHHHHHHHhCCCCceEEEEecccc-cHHHHHHHHHH--hCCCCCCcchhccccC
Confidence 346899999874332 334778999999987 888777766554 11111110000 1111122222222111
Q ss_pred c---cccccchHHHHHHhcCCCCcEEEeCcc---chh---HHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccch
Q 039338 160 K---WRYSKGWEQFDEENQREPFDVVHSESV---ALP---HWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSL 230 (493)
Q Consensus 160 ~---~~~~~~~~~~~~~~~~~~~DiI~~~~~---~~~---~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (493)
. -.....+..+.+.+.+.+||+|.+|+- .+. +....++| +...-.|....... + |.
T Consensus 71 ~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~Ip-V~HvEAGlRt~~~~---~------PE----- 135 (383)
T COG0381 71 QTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIP-VGHVEAGLRTGDLY---F------PE----- 135 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCc-eEEEecccccCCCC---C------cH-----
Confidence 1 122345566777778999999999964 222 22334566 55555553211000 0 00
Q ss_pred HhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCC--cccchhhhhh-hCCC
Q 039338 231 AFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVD--LSLGQSFRSR-IGIP 307 (493)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~--~~~~~~~r~~-~~i~ 307 (493)
...+.+.. .-++..+++++..++.+.+ -|.+.++++++.|.+-....... .......... ++..
T Consensus 136 E~NR~l~~------------~~S~~hfapte~ar~nLl~-EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~ 202 (383)
T COG0381 136 EINRRLTS------------HLSDLHFAPTEIARKNLLR-EGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDK 202 (383)
T ss_pred HHHHHHHH------------HhhhhhcCChHHHHHHHHH-cCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccc
Confidence 00111111 2356679999999999988 58998899999997533221110 0101111112 3333
Q ss_pred CCCcEEEEEeccccc-ccChHHHHHHHHHHHhhCCCeEEEEEeCCC--cHHH-Hhhhc--CcEEEecCCCHHHHHHHHHH
Q 039338 308 KNASLVLGVAGRLVK-DKGHPLLHEAFSKLMVKYPDVYLIVAGSGP--WEQR-YKDFG--HQVLVMGSMSPAELRAFYNA 381 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~-~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~--~~~~-~~~l~--~~V~~~g~~~~~~~~~~~~~ 381 (493)
+++++++.+=|-.. .+++..+++++.++.++++++.++.--... .++. .+.|+ ++|.++.++...+...++..
T Consensus 203 -~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~ 281 (383)
T COG0381 203 -DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKN 281 (383)
T ss_pred -cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHh
Confidence 33366666666543 488999999999999998888777655432 2222 23455 57999999999999999999
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 039338 382 IDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACR 461 (493)
Q Consensus 382 adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~ 461 (493)
|-+++--| |...=||-..|+||++-+...-..|.+ +.+.-.++..+.+.+.+++..++++ ++.+++|+...-
T Consensus 282 a~~iltDS------GgiqEEAp~lg~Pvl~lR~~TERPE~v-~agt~~lvg~~~~~i~~~~~~ll~~-~~~~~~m~~~~n 353 (383)
T COG0381 282 AFLILTDS------GGIQEEAPSLGKPVLVLRDTTERPEGV-EAGTNILVGTDEENILDAATELLED-EEFYERMSNAKN 353 (383)
T ss_pred ceEEEecC------CchhhhHHhcCCcEEeeccCCCCccce-ecCceEEeCccHHHHHHHHHHHhhC-hHHHHHHhcccC
Confidence 98887533 347889999999999987655443544 4445666666899999999999999 788777765544
Q ss_pred HHHHHhcCHHHHHHHHHHHHH
Q 039338 462 QYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 462 ~~~~~~fs~~~~~~~~~~~~~ 482 (493)
.+.... +-+++++.+...+.
T Consensus 354 pYgdg~-as~rIv~~l~~~~~ 373 (383)
T COG0381 354 PYGDGN-ASERIVEILLNYFD 373 (383)
T ss_pred CCcCcc-hHHHHHHHHHHHhh
Confidence 333332 34444444444333
No 115
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.34 E-value=1.9e-10 Score=114.24 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=95.1
Q ss_pred CCCcEEEEEeccccc---ccChHHHHHHHHHHHhhCCCeEE-EEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcC
Q 039338 308 KNASLVLGVAGRLVK---DKGHPLLHEAFSKLMVKYPDVYL-IVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAID 383 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~---~Kg~~~ll~a~~~l~~~~~~~~l-~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~ad 383 (493)
++++.+++..|+... .+....+++++..+ +.++ +.+|...... ..+.++|.+.+++++. .++..||
T Consensus 237 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~~~--~~~~~~v~~~~~~p~~---~ll~~~d 306 (401)
T cd03784 237 AGRPPVYVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGLGA--EDLPDNVRVVDFVPHD---WLLPRCA 306 (401)
T ss_pred CCCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCccccc--cCCCCceEEeCCCCHH---HHhhhhh
Confidence 345577778888754 23334455555543 3444 4456443322 3445899999999755 5688899
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCC----ccceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHHHHH
Q 039338 384 IFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSI----KGTIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRLAQR 456 (493)
Q Consensus 384 v~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~----~~e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~~~~ 456 (493)
++|. + .| ..++.||+++|+|+|+....+- . +.+.+.+.|..+.. +++++.+++.+++++ + .+++.
T Consensus 307 ~~I~---h-gG-~~t~~eal~~GvP~v~~P~~~dQ~~~a-~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~-~-~~~~~ 378 (401)
T cd03784 307 AVVH---H-GG-AGTTAAALRAGVPQLVVPFFGDQPFWA-ARVAELGAGPALDPRELTAERLAAALRRLLDP-P-SRRRA 378 (401)
T ss_pred eeee---c-CC-chhHHHHHHcCCCEEeeCCCCCcHHHH-HHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH-H-HHHHH
Confidence 9995 2 33 4699999999999999976542 1 23455667777764 689999999999885 3 33444
Q ss_pred HHHHHHHHHHhcCHHHHHHHH
Q 039338 457 GEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 457 ~~~~~~~~~~~fs~~~~~~~~ 477 (493)
.+.+.+. ++.-..+..++.+
T Consensus 379 ~~~~~~~-~~~~g~~~~~~~i 398 (401)
T cd03784 379 AALLRRI-REEDGVPSAADVI 398 (401)
T ss_pred HHHHHHH-HhccCHHHHHHHH
Confidence 3333332 2223444444444
No 116
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=9.9e-11 Score=108.94 Aligned_cols=323 Identities=16% Similarity=0.138 Sum_probs=190.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEe---ecCCCCc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHF---HEGEADK 160 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 160 (493)
|||++++.+ .+| ...-..|.++|.++=-+|.++...++.+.....+..- +...+.. ....+..
T Consensus 2 ~ki~i~AGE------~SG-DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~-------~~~elsvmGf~EVL~~l 67 (381)
T COG0763 2 LKIALSAGE------ASG-DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLF-------DMEELSVMGFVEVLGRL 67 (381)
T ss_pred ceEEEEecc------cch-hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCcccc-------CHHHHHHhhHHHHHHHH
Confidence 689999874 344 4456779999988733888888776663222211100 0000000 0000111
Q ss_pred cccccchHHHHHHhcCCCCcEEEeCcc-----chhHHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhH
Q 039338 161 WRYSKGWEQFDEENQREPFDVVHSESV-----ALPHWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKS 235 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~DiI~~~~~-----~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (493)
....+..+.+.+.+...+||++++-+. .+...+.+..| .+-++|-+.+..|. +
T Consensus 68 p~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p-~i~iihYV~PsVWA---------------------W 125 (381)
T COG0763 68 PRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGP-KIKIIHYVSPSVWA---------------------W 125 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCC-CCCeEEEECcceee---------------------e
Confidence 122233344444445889999887543 23334444444 34444433221110 0
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEE
Q 039338 236 LQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLG 315 (493)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~ 315 (493)
-.++. ....+.+|++.++=++..+.+.+ +|.+ ++.|.++.-... +-..+++..|+++|++.+.+.+.+
T Consensus 126 r~~Ra------~~i~~~~D~lLailPFE~~~y~k-~g~~---~~yVGHpl~d~i--~~~~~r~~ar~~l~~~~~~~~lal 193 (381)
T COG0763 126 RPKRA------VKIAKYVDHLLAILPFEPAFYDK-FGLP---CTYVGHPLADEI--PLLPDREAAREKLGIDADEKTLAL 193 (381)
T ss_pred chhhH------HHHHHHhhHeeeecCCCHHHHHh-cCCC---eEEeCChhhhhc--cccccHHHHHHHhCCCCCCCeEEE
Confidence 00011 13345789999999999999988 5653 667777654332 122334568999999999988888
Q ss_pred Eeccccc--ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc--CcE-EEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 316 VAGRLVK--DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG--HQV-LVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 316 ~~Gr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~--~~V-~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
..|+=.. .+-...+.+++.++++++|+.++++--.....+.++... ..+ ...-.+...+-.+.+.+||+.+..|
T Consensus 194 LPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS- 272 (381)
T COG0763 194 LPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS- 272 (381)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-
Confidence 8886432 456788899999999999999999977654433333221 111 1222233357889999999999755
Q ss_pred CCCCCChHHHHHHHcCCcEEecC-----------------CCCCccceeeeCcc-eEEE-CC-CHHHHHHHHHHHHHcCc
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASR-----------------FPSIKGTIVVDDEF-GFMF-AP-NVESLHKTLEAAVSEGP 450 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~-----------------~~~~~~e~v~~~~~-G~~~-~~-d~~~l~~~i~~ll~~~~ 450 (493)
|++.+|++.+|+|.|++- .-+.+ .++.+... --++ +. .++.+++++..++.| .
T Consensus 273 -----GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLp-NIi~~~~ivPEliq~~~~pe~la~~l~~ll~~-~ 345 (381)
T COG0763 273 -----GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLP-NILAGREIVPELIQEDCTPENLARALEELLLN-G 345 (381)
T ss_pred -----cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccch-HHhcCCccchHHHhhhcCHHHHHHHHHHHhcC-h
Confidence 679999999999998862 12223 23322110 0011 12 689999999999998 5
Q ss_pred HHHHHHHHHHHH
Q 039338 451 MRLAQRGEACRQ 462 (493)
Q Consensus 451 ~~~~~~~~~~~~ 462 (493)
..++++.+...+
T Consensus 346 ~~~~~~~~~~~~ 357 (381)
T COG0763 346 DRREALKEKFRE 357 (381)
T ss_pred HhHHHHHHHHHH
Confidence 454555444433
No 117
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.22 E-value=2.9e-09 Score=99.50 Aligned_cols=255 Identities=16% Similarity=0.106 Sum_probs=145.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
||+|.+..-+. ...|.-.++..||++|.++|++|.+++..... . ..+.. ...+.+ +..+..... ..
T Consensus 1 ~i~ir~Da~~~--iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~--~-~~~~i-----~~~g~~-v~~~~~~~~---~~ 66 (279)
T TIGR03590 1 KILFRADASSE--IGLGHVMRCLTLARALHAQGAEVAFACKPLPG--D-LIDLL-----LSAGFP-VYELPDESS---RY 66 (279)
T ss_pred CEEEEecCCcc--ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH--H-HHHHH-----HHcCCe-EEEecCCCc---hh
Confidence 57888875442 66788888999999999999999999987544 1 00110 011221 222211111 11
Q ss_pred cchHHHHHHhcCCCCcEEEeCccchhHH----hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVALPHW----LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVM 240 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~~~~~----~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
.....+.+.+++.+||+|++.++.+... +....+ .+..+-|....
T Consensus 67 ~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~-~l~~iDD~~~~------------------------------ 115 (279)
T TIGR03590 67 DDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGR-KILVIDDLADR------------------------------ 115 (279)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCC-eEEEEecCCCC------------------------------
Confidence 2234567777777999999987643322 112223 34444442110
Q ss_pred HHHHHHHHhhccCCeEEEcChhHHHHHHHHhC-CCCCcEEEecC---CccCCCccCCcccchhhhhhhCCCCCCcEEEEE
Q 039338 241 LKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQ-IPSERVHVILN---GINENEYGVDLSLGQSFRSRIGIPKNASLVLGV 316 (493)
Q Consensus 241 ~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~-~~~~~v~vi~n---gvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~ 316 (493)
-..+|.++-.+.. .+... +.+ .+......... .+..++....+ ......+.+.++++
T Consensus 116 ---------~~~~D~vin~~~~-~~~~~-y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~--------~~~~~~~~~~iLi~ 176 (279)
T TIGR03590 116 ---------PHDCDLLLDQNLG-ADASD-YQGLVPANCRLLLGPSYALLREEFYQLAT--------ANKRRKPLRRVLVS 176 (279)
T ss_pred ---------CcCCCEEEeCCCC-cCHhH-hcccCcCCCeEEecchHHhhhHHHHHhhH--------hhhcccccCeEEEE
Confidence 0146766666554 22221 112 34333333322 12221111110 00001122356778
Q ss_pred ecccccccChHHHHHHHHHHHhhCCCeEE-EEEeCC-CcHHHHhhh---cCcEEEecCCCHHHHHHHHHHcCEEEeCCCC
Q 039338 317 AGRLVKDKGHPLLHEAFSKLMVKYPDVYL-IVAGSG-PWEQRYKDF---GHQVLVMGSMSPAELRAFYNAIDIFVNPTLR 391 (493)
Q Consensus 317 ~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l-~i~G~g-~~~~~~~~l---~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~ 391 (493)
+|..+..+....+++++..+. .++++ +++|.+ +..+.+++. ..+|.+.+++ +++.++|++||++|.+
T Consensus 177 ~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~--~~m~~lm~~aDl~Is~--- 248 (279)
T TIGR03590 177 FGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEYPNIILFIDV--ENMAELMNEADLAIGA--- 248 (279)
T ss_pred eCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCH--HHHHHHHHHCCEEEEC---
Confidence 888887666677788877653 23443 366764 444444443 2689999998 6999999999999963
Q ss_pred CCCCChHHHHHHHcCCcEEecCC
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRF 414 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~ 414 (493)
.|.|+.|++++|+|+|+...
T Consensus 249 ---~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 ---AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred ---CchHHHHHHHcCCCEEEEEe
Confidence 24799999999999998754
No 118
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.20 E-value=7.7e-10 Score=105.79 Aligned_cols=308 Identities=14% Similarity=0.160 Sum_probs=176.4
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQRE 177 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (493)
+.+| ..+...|+++|.+++-++.++...+..+.....+...+.. ....+-+....+......+....+.+.+.+.
T Consensus 7 E~SG-D~~ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~~l~d~~----~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~ 81 (373)
T PF02684_consen 7 EASG-DLHGARLIRALKARDPDIEFYGVGGPRMQAAGVESLFDME----ELSVMGFVEVLKKLPKLKRLFRKLVERIKEE 81 (373)
T ss_pred CccH-HHHHHHHHHHHHhhCCCcEEEEEechHHHhCCCceecchH----HhhhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455 6678999999999988888888777663332222211000 0000000000011112333445555556688
Q ss_pred CCcEEEeCcc-chhHHhhh----ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhcc
Q 039338 178 PFDVVHSESV-ALPHWLAR----NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNK 252 (493)
Q Consensus 178 ~~DiI~~~~~-~~~~~~~~----~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (493)
+||+++.-++ .+...+++ .-++. -.+|-+.+.. |. |+..-.+ .+-+.
T Consensus 82 ~pd~vIlID~pgFNlrlak~lk~~~~~~-~viyYI~Pqv-----WA-------------Wr~~R~~---------~i~~~ 133 (373)
T PF02684_consen 82 KPDVVILIDYPGFNLRLAKKLKKRGIPI-KVIYYISPQV-----WA-------------WRPGRAK---------KIKKY 133 (373)
T ss_pred CCCEEEEeCCCCccHHHHHHHHHhCCCc-eEEEEECCce-----ee-------------eCccHHH---------HHHHH
Confidence 9999887543 33333332 22211 1122111111 10 0011111 22345
Q ss_pred CCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccc-c-ccChHHHH
Q 039338 253 YAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLV-K-DKGHPLLH 330 (493)
Q Consensus 253 ~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~-~-~Kg~~~ll 330 (493)
+|+++++=++..+++.+ +|+ ++..+.|+.-..... .......++.+ ++.+++++.+..|+=. + .+....++
T Consensus 134 ~D~ll~ifPFE~~~y~~-~g~---~~~~VGHPl~d~~~~--~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l 206 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFYKK-HGV---PVTYVGHPLLDEVKP--EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFL 206 (373)
T ss_pred HhheeECCcccHHHHhc-cCC---CeEEECCcchhhhcc--CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 68899999999999988 464 577888775432211 12234556666 8888877777777532 2 45668889
Q ss_pred HHHHHHHhhCCCeEEEEEeCCCcHHH-Hhh----hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHc
Q 039338 331 EAFSKLMVKYPDVYLIVAGSGPWEQR-YKD----FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMS 405 (493)
Q Consensus 331 ~a~~~l~~~~~~~~l~i~G~g~~~~~-~~~----l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~ 405 (493)
++++++.+++|++++++......... +.+ ...++...-. ..+-.+.|++||+.+..| |++.+|++.+
T Consensus 207 ~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S------GTaTLE~Al~ 278 (373)
T PF02684_consen 207 EAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS------GTATLEAALL 278 (373)
T ss_pred HHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC------CHHHHHHHHh
Confidence 99999999999999998775443322 222 1232322211 246778999999999755 6799999999
Q ss_pred CCcEEecC-----------------CCCCccceeeeCc-ce-EEECC-CHHHHHHHHHHHHHcCcHHHHH
Q 039338 406 GKPVMASR-----------------FPSIKGTIVVDDE-FG-FMFAP-NVESLHKTLEAAVSEGPMRLAQ 455 (493)
Q Consensus 406 G~PvI~s~-----------------~~~~~~e~v~~~~-~G-~~~~~-d~~~l~~~i~~ll~~~~~~~~~ 455 (493)
|+|.|+.- .-+++ .++.+.+ .- ++-+. +++.+++++..++.| .+.++.
T Consensus 279 g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~-Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~-~~~~~~ 346 (373)
T PF02684_consen 279 GVPMVVAYKVSPLTYFIAKRLVKVKYISLP-NIIAGREVVPELIQEDATPENIAAELLELLEN-PEKRKK 346 (373)
T ss_pred CCCEEEEEcCcHHHHHHHHHhhcCCEeech-hhhcCCCcchhhhcccCCHHHHHHHHHHHhcC-HHHHHH
Confidence 99998762 11222 2222211 11 11123 899999999999998 555433
No 119
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.20 E-value=7.7e-09 Score=102.37 Aligned_cols=161 Identities=17% Similarity=0.213 Sum_probs=103.4
Q ss_pred CCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeE-EEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEE
Q 039338 308 KNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVY-LIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFV 386 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~-l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v 386 (493)
.+++.+++..|+..... ...+-+++..+.+. +++ ++.+|.+.....+.++.++|.+.+++++. +++..||++|
T Consensus 223 ~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~--~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~---~ll~~~~~~I 296 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQ-PSFYRTCVEAFRDL--DWHVVLSVGRGVDPADLGELPPNVEVRQWVPQL---EILKKADAFI 296 (392)
T ss_pred CCCCEEEEecCccCCCC-HHHHHHHHHHHhcC--CCeEEEEECCCCChhHhccCCCCeEEeCCCCHH---HHHhhCCEEE
Confidence 34557778888864322 12222233333222 334 44556655555555667899999999864 6789999999
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 039338 387 NPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRLAQRGEAC 460 (493)
Q Consensus 387 ~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~~~~~~~~ 460 (493)
..+ |. .+++||+++|+|+|+....+-.. +.+.+.+.|..+.. +++++.++|.+++++ ++.++++ +..
T Consensus 297 ~hg----G~-~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~-~~~~~~~-~~l 369 (392)
T TIGR01426 297 THG----GM-NSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD-PRYAERL-RKM 369 (392)
T ss_pred ECC----Cc-hHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC-HHHHHHH-HHH
Confidence 633 32 48999999999999986543221 23445567777763 689999999999988 6644444 334
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 039338 461 RQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 461 ~~~~~~~fs~~~~~~~~~~~~ 481 (493)
++.+...-..+..++.+++++
T Consensus 370 ~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 370 RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHcCCHHHHHHHHHHhh
Confidence 444444456777777776654
No 120
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=2.4e-10 Score=110.58 Aligned_cols=183 Identities=18% Similarity=0.255 Sum_probs=139.7
Q ss_pred hhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEe-----CCCcHHHHhhhc---CcEEEecCC
Q 039338 299 SFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAG-----SGPWEQRYKDFG---HQVLVMGSM 370 (493)
Q Consensus 299 ~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G-----~g~~~~~~~~l~---~~V~~~g~~ 370 (493)
..|..+++|++. ++++.+..+ .|--...++.|.++.++.|+-.|++.- +...+.+.++++ ++|+|.+-.
T Consensus 748 P~r~~y~Lp~d~-vvf~~FNqL--yKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va 824 (966)
T KOG4626|consen 748 PTRSQYGLPEDA-VVFCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVA 824 (966)
T ss_pred CCCCCCCCCCCe-EEEeechhh--hcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeecccc
Confidence 467889999886 666666555 476778899999999999998888754 333445566665 899999988
Q ss_pred CHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc----ceeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 371 SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG----TIVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 371 ~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~----e~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
..+|-..-++-+||.+.+... +--++-+|.+++|+|+|+-....... ..+..-+.|-++..+.++..+.-.++-
T Consensus 825 ~k~eHvrr~~LaDv~LDTplc--nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~La 902 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLC--NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLA 902 (966)
T ss_pred chHHHHHhhhhhhhcccCcCc--CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhh
Confidence 888888999999999986643 33468899999999999875322221 122233455566668899999999999
Q ss_pred HcCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhhc
Q 039338 447 SEGPMRLAQRGEACRQYAASM--FTANKMALAYERLFLCIKNE 487 (493)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~~~~i~~~ 487 (493)
.| .+.++.+..+.++..... |+-.+.+..++++|.+|.++
T Consensus 903 td-~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~ 944 (966)
T KOG4626|consen 903 TD-KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKK 944 (966)
T ss_pred cC-HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHH
Confidence 88 888888888887765543 89999999999999998754
No 121
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.19 E-value=1e-08 Score=98.31 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=80.3
Q ss_pred CCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 309 NASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 309 ~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
+++.++++.|. .+...+++++.++ +++.+++ |..... ...+.+++.+.++.+ +++.++|..||++|.-
T Consensus 187 ~~~~iLv~~g~----~~~~~l~~~l~~~----~~~~~i~-~~~~~~--~~~~~~~v~~~~~~~-~~~~~~l~~ad~vI~~ 254 (321)
T TIGR00661 187 GEDYILVYIGF----EYRYKILELLGKI----ANVKFVC-YSYEVA--KNSYNENVEIRRITT-DNFKELIKNAELVITH 254 (321)
T ss_pred CCCcEEEECCc----CCHHHHHHHHHhC----CCeEEEE-eCCCCC--ccccCCCEEEEECCh-HHHHHHHHhCCEEEEC
Confidence 33456667654 2445666776555 4555544 432211 124458999999876 7899999999999963
Q ss_pred CCCCCCCChHHHHHHHcCCcEEecCCCCCccc-----eeeeCcceEEECC-CHHHHHHHHHHHHHc
Q 039338 389 TLRPQGLDLTLMEAMMSGKPVMASRFPSIKGT-----IVVDDEFGFMFAP-NVESLHKTLEAAVSE 448 (493)
Q Consensus 389 s~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e-----~v~~~~~G~~~~~-d~~~l~~~i~~ll~~ 448 (493)
+ |+ .++.||+++|+|+|.....+..++ .+++.+.|..++. +. ++.+++.+.+.+
T Consensus 255 ~----G~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~ 314 (321)
T TIGR00661 255 G----GF-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNM 314 (321)
T ss_pred C----Ch-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccc
Confidence 3 32 479999999999999987654321 3556677888776 55 555555555544
No 122
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.17 E-value=2.6e-09 Score=100.83 Aligned_cols=296 Identities=12% Similarity=0.111 Sum_probs=167.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc--
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW-- 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (493)
|||++-..+ | ..-.+..++++.|.++||+|.+.+..... . .+..+ ..+.+...+-.......
T Consensus 1 MkIwiDi~~-p------~hvhfFk~~I~eL~~~GheV~it~R~~~~--~--~~LL~-----~yg~~y~~iG~~g~~~~~K 64 (335)
T PF04007_consen 1 MKIWIDITH-P------AHVHFFKNIIRELEKRGHEVLITARDKDE--T--EELLD-----LYGIDYIVIGKHGDSLYGK 64 (335)
T ss_pred CeEEEECCC-c------hHHHHHHHHHHHHHhCCCEEEEEEeccch--H--HHHHH-----HcCCCeEEEcCCCCCHHHH
Confidence 788887753 2 24667889999999999999999887654 1 11110 01222222211111111
Q ss_pred --ccccchHHHHHHhcCCCCcEEEeCccchh--HHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHH
Q 039338 162 --RYSKGWEQFDEENQREPFDVVHSESVALP--HWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQ 237 (493)
Q Consensus 162 --~~~~~~~~~~~~~~~~~~DiI~~~~~~~~--~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (493)
.......++.+.+++.+||++++.+..-. .....++| .+........ ...
T Consensus 65 l~~~~~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP-~I~f~D~e~a-----~~~-------------------- 118 (335)
T PF04007_consen 65 LLESIERQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIP-SIVFNDTEHA-----IAQ-------------------- 118 (335)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCC-eEEEecCchh-----hcc--------------------
Confidence 11222345555667889999998765322 34445667 5544433110 000
Q ss_pred HHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEe-cCCccCCCccCCcccchhhhhhhCCCCCCcEEEEE
Q 039338 238 GVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVI-LNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGV 316 (493)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi-~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~ 316 (493)
.+-.++-+|.++++.-.-.+.+.+ +|.. . .+. ++|+++..+-..-.....+.+++|++++ +++++=
T Consensus 119 --------~~Lt~Pla~~i~~P~~~~~~~~~~-~G~~-~--~i~~y~G~~E~ayl~~F~Pd~~vl~~lg~~~~-~yIvvR 185 (335)
T PF04007_consen 119 --------NRLTLPLADVIITPEAIPKEFLKR-FGAK-N--QIRTYNGYKELAYLHPFKPDPEVLKELGLDDE-PYIVVR 185 (335)
T ss_pred --------ceeehhcCCeeECCcccCHHHHHh-cCCc-C--CEEEECCeeeEEeecCCCCChhHHHHcCCCCC-CEEEEE
Confidence 002245678888776655555555 6643 2 344 7888875544334444678899997754 455532
Q ss_pred eccccc--ccCh-HHHHHHHHHHHhhCCCeEEEEEeCCCcH-HHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCC
Q 039338 317 AGRLVK--DKGH-PLLHEAFSKLMVKYPDVYLIVAGSGPWE-QRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 317 ~Gr~~~--~Kg~-~~ll~a~~~l~~~~~~~~l~i~G~g~~~-~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~ 392 (493)
...+.. .+|- ..+-+.+..+.+.+ +. ++++.+.... +..++.. +.+.... -+..+++.-||++|-
T Consensus 186 ~~~~~A~y~~~~~~i~~~ii~~L~~~~-~~-vV~ipr~~~~~~~~~~~~--~~i~~~~--vd~~~Ll~~a~l~Ig----- 254 (335)
T PF04007_consen 186 PEAWKASYDNGKKSILPEIIEELEKYG-RN-VVIIPRYEDQRELFEKYG--VIIPPEP--VDGLDLLYYADLVIG----- 254 (335)
T ss_pred eccccCeeecCccchHHHHHHHHHhhC-ce-EEEecCCcchhhHHhccC--ccccCCC--CCHHHHHHhcCEEEe-----
Confidence 222111 2222 33456677776654 33 5556544333 3333322 4333321 256689999999992
Q ss_pred CCCChHHHHHHHcCCcEEecCCCCC--ccceeeeCcceEEECC-CHHHHHHHHHHHHHc
Q 039338 393 QGLDLTLMEAMMSGKPVMASRFPSI--KGTIVVDDEFGFMFAP-NVESLHKTLEAAVSE 448 (493)
Q Consensus 393 eg~~~~~~EAm~~G~PvI~s~~~~~--~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~ 448 (493)
+| |+...||..+|+|.|++..|.. .++.+. +.|+++.. |++++.+.+.+....
T Consensus 255 ~g-gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~--~~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 255 GG-GTMAREAALLGTPAISCFPGKLLAVDKYLI--EKGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred CC-cHHHHHHHHhCCCEEEecCCcchhHHHHHH--HCCCeEecCCHHHHHHHHHHhhhc
Confidence 33 6899999999999999754322 112332 34777777 999988866665443
No 123
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.17 E-value=6e-09 Score=96.55 Aligned_cols=333 Identities=11% Similarity=0.047 Sum_probs=203.5
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQRE 177 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (493)
..+|...+...+.++|...||+|..+-+.... ........ ....-...+... ..-......++..
T Consensus 12 y~~~~~~~~~~~~~~l~~~g~kvlflE~~~~~--~~k~rd~~-----~~~~~~~~~~~~--------~~e~~~~~~i~~f 76 (373)
T COG4641 12 YNNGSAEYYRGLLRALKMDGMKVLFLESGDFW--DYKNRDID-----AEDGCTEAFYKD--------QPELESLLYIREF 76 (373)
T ss_pred hcCCchhhHHHHHHHHHhccceEEEEecccHH--hhhccccc-----CccchhheeecC--------cHHHHHHHHHHhc
Confidence 45667778889999999999999999877655 11111100 000000001000 0112334455688
Q ss_pred CCcEEEeCcc----------chhHHhh-hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHH
Q 039338 178 PFDVVHSESV----------ALPHWLA-RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNE 246 (493)
Q Consensus 178 ~~DiI~~~~~----------~~~~~~~-~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (493)
++|+|..... .+.+|+. ..+| ++...-+.++........ ....+.
T Consensus 77 k~d~iv~~~~~~~~~~~~~~~~~a~l~~~~l~-~~~w~te~p~~~~~~~~~------------------~~~~~~----- 132 (373)
T COG4641 77 KPDIIVNMSGDDQPDEESTIDLWAWLKRKCLP-VIVWYTEDPYDTDIFSQV------------------AEEQLA----- 132 (373)
T ss_pred CCcEEEEecccccccceehHHHHHHhhcCCcc-eEEEEeccchhhhhhhhh------------------hHHHhh-----
Confidence 9999987532 2333333 3445 566665544433222111 111111
Q ss_pred HHhhccCCeEEEcChhH-HHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccC
Q 039338 247 IRFFNKYAHHVAISDSC-GEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKG 325 (493)
Q Consensus 247 ~~~~~~~d~ii~~S~~~-~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg 325 (493)
++-+...|.|++.++.. ++.+.+..+ ..+++.++.++|.+.+.+-+.+. ....-+.++|+..+. -
T Consensus 133 ~~~l~~fd~v~~~g~~l~~~~yyq~~~--~~~~~~~~~a~d~~~~~~i~~da-----------~~~~dL~~ign~~pD-r 198 (373)
T COG4641 133 RRPLFIFDNVLSFGGGLVANKYYQEGG--ARNCYYLPWAVDDSLFHPIPPDA-----------SYDVDLNLIGNPYPD-R 198 (373)
T ss_pred ccccchhhhhhhccchHHHHHHHHhhc--ccceeccCccCCchhcccCCccc-----------cceeeeEEecCCCcc-H
Confidence 11223344566666666 555554332 46889999999999887765321 111357788887654 1
Q ss_pred hHHHHHHHHHHHhhC-CCeEEEEEeCCCcHHHHhh-hcCcEEEecCCCH-HHHHHHHHHcCEEEeCCC--CCCC---CCh
Q 039338 326 HPLLHEAFSKLMVKY-PDVYLIVAGSGPWEQRYKD-FGHQVLVMGSMSP-AELRAFYNAIDIFVNPTL--RPQG---LDL 397 (493)
Q Consensus 326 ~~~ll~a~~~l~~~~-~~~~l~i~G~g~~~~~~~~-l~~~V~~~g~~~~-~~~~~~~~~adv~v~ps~--~~eg---~~~ 397 (493)
.+.+-+.+..-..+. .+-++.+.|..-....... ..+++...|+++. ..+...++..|+.++-+. ..++ +.+
T Consensus 199 ~e~~ke~~~~ps~kl~v~rr~~~~g~~y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~ 278 (373)
T COG4641 199 VEEIKEFFVEPSFKLMVDRRFYVLGPRYPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTN 278 (373)
T ss_pred HHHHHHHhhccchhhhccceeeecCCccchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchh
Confidence 222222222111111 1345666665411222221 2368888898866 889999999999887432 1122 378
Q ss_pred HHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKMALAY 477 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 477 (493)
-++|+++||.|.|+....++. ....+|+.-++.. |.+++.+.+..++.. ++.++++++.+++.+...|+.++-+.++
T Consensus 279 RvFeiagc~~~liT~~~~~~e-~~f~pgk~~iv~~-d~kdl~~~~~yll~h-~~erkeiae~~ye~V~~~ht~~~r~~~~ 355 (373)
T COG4641 279 RVFEIAGCGGFLITDYWKDLE-KFFKPGKDIIVYQ-DSKDLKEKLKYLLNH-PDERKEIAECAYERVLARHTYEERIFKL 355 (373)
T ss_pred hHHHHhhcCCccccccHHHHH-HhcCCchheEEec-CHHHHHHHHHHHhcC-cchHHHHHHhhHHHHHHhccHHHHHHHH
Confidence 899999999999998877775 5566665544444 999999999999999 8999999999999999999999998888
Q ss_pred HHHHHHHhh
Q 039338 478 ERLFLCIKN 486 (493)
Q Consensus 478 ~~~~~~i~~ 486 (493)
.+....+..
T Consensus 356 ~~~i~sI~~ 364 (373)
T COG4641 356 LNEIASINI 364 (373)
T ss_pred HHHHHHHHH
Confidence 877776443
No 124
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.14 E-value=1.2e-10 Score=111.88 Aligned_cols=274 Identities=15% Similarity=0.105 Sum_probs=147.8
Q ss_pred cchHHHHHHhcCCCCcEEEeCccc---hh---HHhhhccCcEEEEeccc-hhhhhhhhhhhhhhcCCCCccchHhHhHHH
Q 039338 165 KGWEQFDEENQREPFDVVHSESVA---LP---HWLARNVTNLAVSWHGI-ALESLQSGIFQDLTRKPLEPMSLAFNKSLQ 237 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~~~---~~---~~~~~~~p~~v~~~h~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (493)
.....+...+.+.+||+|++++-. +. ++...++| +..+++- ........ ...
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ip--v~HieaGlRs~d~~~g-------------------~~d 112 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIP--VAHIEAGLRSGDRTEG-------------------MPD 112 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-E--EEEES-----S-TTSS-------------------TTH
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCC--EEEecCCCCccccCCC-------------------Cch
Confidence 345566667778899999998642 22 22334556 4444442 11100000 111
Q ss_pred HHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhh-hhhhCCCCCCcEEEEE
Q 039338 238 GVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSF-RSRIGIPKNASLVLGV 316 (493)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~-r~~~~i~~~~~~~i~~ 316 (493)
...+.. .-+-++..++.++..++.+.+ .|+++++++++.|..-.............. ...+.-...++++++.
T Consensus 113 e~~R~~-----i~~la~lhf~~t~~~~~~L~~-~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt 186 (346)
T PF02350_consen 113 EINRHA-----IDKLAHLHFAPTEEARERLLQ-EGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVT 186 (346)
T ss_dssp HHHHHH-----HHHH-SEEEESSHHHHHHHHH-TT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE
T ss_pred hhhhhh-----hhhhhhhhccCCHHHHHHHHh-cCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEE
Confidence 111111 123478899999999999998 599999999998853222211111111111 1111002344466666
Q ss_pred eccccc---ccChHHHHHHHHHHHhhCCCeEEEEEeCC--CcH----HHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 317 AGRLVK---DKGHPLLHEAFSKLMVKYPDVYLIVAGSG--PWE----QRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 317 ~Gr~~~---~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g--~~~----~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
.=+... ......+.+++..+.+. +++.+++.... ... +.++++ +++.+...++..++..+++.|+++|-
T Consensus 187 ~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll~~a~~vvg 264 (346)
T PF02350_consen 187 LHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLLKNADLVVG 264 (346)
T ss_dssp -S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHHHHESEEEE
T ss_pred eCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHHhcceEEEE
Confidence 544432 34567888888888887 78888887752 222 234444 69999999999999999999999995
Q ss_pred CCCCCCCCChHHH-HHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 039338 388 PTLRPQGLDLTLM-EAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAAS 466 (493)
Q Consensus 388 ps~~~eg~~~~~~-EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 466 (493)
-| | .+. ||..+|+|+|.-+..+-..+.+..+.+-+ +..|.+++.+++.+++++ .+.+.++.. ...
T Consensus 265 dS------s-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~-~~~~~~~~~-----~~n 330 (346)
T PF02350_consen 265 DS------S-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSD-KDFYRKLKN-----RPN 330 (346)
T ss_dssp SS------H-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH--HHHHHHHHC-----S--
T ss_pred cC------c-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhC-hHHHHhhcc-----CCC
Confidence 33 3 555 99999999999966665546666665544 777999999999999987 444443321 122
Q ss_pred hcCHHHHHHHHHHHH
Q 039338 467 MFTANKMALAYERLF 481 (493)
Q Consensus 467 ~fs~~~~~~~~~~~~ 481 (493)
-|.-.+.++++.+++
T Consensus 331 pYgdG~as~rI~~~L 345 (346)
T PF02350_consen 331 PYGDGNASERIVEIL 345 (346)
T ss_dssp TT-SS-HHHHHHHHH
T ss_pred CCCCCcHHHHHHHhh
Confidence 344445555555554
No 125
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.10 E-value=3.1e-09 Score=104.21 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=110.0
Q ss_pred CCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEE
Q 039338 306 IPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIF 385 (493)
Q Consensus 306 i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~ 385 (493)
++.+++++.+..|..... ..+++.+...... -+.++++...+ .+.....+.+|+...+++|+.+ ++..||++
T Consensus 233 ~~~d~~~vyvslGt~~~~---~~l~~~~~~a~~~-l~~~vi~~~~~-~~~~~~~~p~n~~v~~~~p~~~---~l~~ad~v 304 (406)
T COG1819 233 IPADRPIVYVSLGTVGNA---VELLAIVLEALAD-LDVRVIVSLGG-ARDTLVNVPDNVIVADYVPQLE---LLPRADAV 304 (406)
T ss_pred hcCCCCeEEEEcCCcccH---HHHHHHHHHHHhc-CCcEEEEeccc-cccccccCCCceEEecCCCHHH---HhhhcCEE
Confidence 456666777788887644 3333333322222 26777777654 3335666779999999997664 89999999
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEecCCCCCc---cceeeeCcceEEEC--C-CHHHHHHHHHHHHHcCcHHHHHHHHH
Q 039338 386 VNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIK---GTIVVDDEFGFMFA--P-NVESLHKTLEAAVSEGPMRLAQRGEA 459 (493)
Q Consensus 386 v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~---~e~v~~~~~G~~~~--~-d~~~l~~~i~~ll~~~~~~~~~~~~~ 459 (493)
|... |. .++.||+.+|+|+|+-..+.-. .+.+++-+.|...+ . +++.+.++|.+++.+ +. +++-.++
T Consensus 305 I~hG----G~-gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~-~~-~~~~~~~ 377 (406)
T COG1819 305 IHHG----GA-GTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD-DS-YRRAAER 377 (406)
T ss_pred EecC----Cc-chHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC-HH-HHHHHHH
Confidence 9743 33 4999999999999998755311 13466678898887 4 899999999999997 44 4444455
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 039338 460 CRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 460 ~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
..+.+.+.-..++.++.++++..
T Consensus 378 ~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 378 LAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred HHHHhhhcccHHHHHHHHHHHHh
Confidence 55555554555556666665554
No 126
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.04 E-value=2.4e-07 Score=93.73 Aligned_cols=133 Identities=16% Similarity=0.154 Sum_probs=88.4
Q ss_pred cEEEEEeccccc-----ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEE
Q 039338 311 SLVLGVAGRLVK-----DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIF 385 (493)
Q Consensus 311 ~~~i~~~Gr~~~-----~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~ 385 (493)
+.+++..|.... .+-...+++|++++ + .++++..++.... ..+.+||.+.+++|+.++... ..++++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l----~-~~viw~~~~~~~~--~~~p~Nv~i~~w~Pq~~lL~h-p~v~~f 368 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL----P-YNVLWKYDGEVEA--INLPANVLTQKWFPQRAVLKH-KNVKAF 368 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC----C-CeEEEEECCCcCc--ccCCCceEEecCCCHHHHhcC-CCCCEE
Confidence 377778888753 22345566666655 3 4665554433222 345689999999998654322 568889
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 386 VNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 386 v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
|. + .| ..++.||+.+|+|+|+....+-.. ..+++.+.|..++. +.+++.++|.++++| ++.+++..
T Consensus 369 It---H-GG-~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~-~~y~~~a~ 440 (507)
T PHA03392 369 VT---Q-GG-VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN-PKYRKNLK 440 (507)
T ss_pred Ee---c-CC-cccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC-HHHHHHHH
Confidence 85 2 33 459999999999999987543110 23455677888764 789999999999988 55544433
No 127
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.01 E-value=1.8e-08 Score=85.95 Aligned_cols=168 Identities=15% Similarity=0.178 Sum_probs=103.8
Q ss_pred EEEEEecc-CCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc-c
Q 039338 85 KIAVFSRK-WPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW-R 162 (493)
Q Consensus 85 kIl~v~~~-~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (493)
||+++... .|. ..||.|+++.+|+..|+++||+|+|+|..... ...... ..+...+++.....+.. .
T Consensus 3 kIaIiGtrGIPa--~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~--~~~~~~-------y~gv~l~~i~~~~~g~~~s 71 (185)
T PF09314_consen 3 KIAIIGTRGIPA--RYGGFETFVEELAPRLVSKGIDVTVYCRSDYY--PYKEFE-------YNGVRLVYIPAPKNGSAES 71 (185)
T ss_pred eEEEEeCCCCCc--ccCcHHHHHHHHHHHHhcCCceEEEEEccCCC--CCCCcc-------cCCeEEEEeCCCCCCchHH
Confidence 59999884 554 89999999999999999999999999987654 111111 12222233322222211 1
Q ss_pred cccchHHHHHHh---c--CCCCcEEEeCccch---hHHhhh-----ccCcEEEEeccchhhhhhhhhhhhhhcCCCCccc
Q 039338 163 YSKGWEQFDEEN---Q--REPFDVVHSESVAL---PHWLAR-----NVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMS 229 (493)
Q Consensus 163 ~~~~~~~~~~~~---~--~~~~DiI~~~~~~~---~~~~~~-----~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 229 (493)
..-.+..+...+ + +.+.||+++++... ...+.+ +.+ +++..||+.+..
T Consensus 72 i~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~-v~vN~DGlEWkR------------------ 132 (185)
T PF09314_consen 72 IIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGK-VVVNMDGLEWKR------------------ 132 (185)
T ss_pred HHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCc-EEECCCcchhhh------------------
Confidence 111122222222 1 34688999887642 222222 224 899999975432
Q ss_pred hHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCcc
Q 039338 230 LAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGIN 286 (493)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd 286 (493)
.+|.... +...+ +.|+...+.+|.+|+.|+.+++++.++|+ ..+..+|++|.|
T Consensus 133 ~KW~~~~-k~~lk-~~E~~avk~ad~lIaDs~~I~~y~~~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 133 AKWGRPA-KKYLK-FSEKLAVKYADRLIADSKGIQDYIKERYG--RKKSTFIAYGAD 185 (185)
T ss_pred hhcCHHH-HHHHH-HHHHHHHHhCCEEEEcCHHHHHHHHHHcC--CCCcEEecCCCC
Confidence 1222222 22222 23556678999999999999999999986 468899999976
No 128
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.99 E-value=3.6e-08 Score=98.46 Aligned_cols=323 Identities=12% Similarity=0.148 Sum_probs=181.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
-||.+++. +.+| ..+...|+++|.++.-++.+....++.+.....+..-+. .....+-+....+.....
T Consensus 227 ~kIfI~AG------E~SG-DlhgA~Li~aLk~~~P~i~~~GvGG~~M~aaG~e~l~d~----~eLsVmG~~EVL~~l~~l 295 (608)
T PRK01021 227 TSCFISAG------EHSG-DTLGGNLLKEIKALYPDIHCFGVGGPQMRAEGFHPLFNM----EEFQVSGFWEVLLALFKL 295 (608)
T ss_pred CeEEEEec------cccH-HHHHHHHHHHHHhcCCCcEEEEEccHHHHhCcCcccCCh----HHhhhhhHHHHHHHHHHH
Confidence 47998886 3455 567888999999987788888777666333222221111 000001111111122233
Q ss_pred ccchHHHHHHhcCCCCcEEEeCcc-chhHHhhhccCcE---EEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 164 SKGWEQFDEENQREPFDVVHSESV-ALPHWLARNVTNL---AVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~-~~~~~~~~~~p~~---v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
.+..+.+.+.+.+.+||++++-+. .+...+++.+.+. +-.+|-+.+. +|. |+....+
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq-----VWA-------------WR~~Rik- 356 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS-----IWA-------------WRPKRKT- 356 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc-----cee-------------eCcchHH-
Confidence 444556666667889999987543 3333233221110 1122221111 110 0011111
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
.+-+.+|+++|+=+...+.+++ +|+ ++..+.|+.-... . .....+..++++|++++++++-+..|+
T Consensus 357 --------ki~k~vD~ll~IfPFE~~~y~~-~gv---~v~yVGHPL~d~i-~-~~~~~~~~r~~lgl~~~~~iIaLLPGS 422 (608)
T PRK01021 357 --------ILEKYLDLLLLILPFEQNLFKD-SPL---RTVYLGHPLVETI-S-SFSPNLSWKEQLHLPSDKPIVAAFPGS 422 (608)
T ss_pred --------HHHHHhhhheecCccCHHHHHh-cCC---CeEEECCcHHhhc-c-cCCCHHHHHHHcCCCCCCCEEEEECCC
Confidence 2234568899999999999988 565 5777777753321 1 122345678899998777677677775
Q ss_pred cc-c-ccChHHHHHHHH--HHHhhCCCeEEEEEeCCCc-HHHHhhhc--C---cEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 320 LV-K-DKGHPLLHEAFS--KLMVKYPDVYLIVAGSGPW-EQRYKDFG--H---QVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 320 ~~-~-~Kg~~~ll~a~~--~l~~~~~~~~l~i~G~g~~-~~~~~~l~--~---~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
=. + .+..+.++++++ .+.+ +.++++....+. .+.+++.- . .+.+... ++-.+++++||+.+..|
T Consensus 423 R~~EI~rllPv~l~aa~~~~l~~---~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~---~~~~~~m~aaD~aLaaS 496 (608)
T PRK01021 423 RRGDILRNLTIQVQAFLASSLAS---THQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS---QFRYELMRECDCALAKC 496 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc---CeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC---cchHHHHHhcCeeeecC
Confidence 32 2 456778888887 5543 577877543322 33444322 1 2233321 12369999999999765
Q ss_pred CCCCCCChHHHHHHHcCCcEEec-CCC------------------CCccceeeeCc-ceEEE---CC-CHHHHHHHHHHH
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMAS-RFP------------------SIKGTIVVDDE-FGFMF---AP-NVESLHKTLEAA 445 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s-~~~------------------~~~~e~v~~~~-~G~~~---~~-d~~~l~~~i~~l 445 (493)
|++.+|++.+|+|.|+. +.. +++ .++.+.+ .--++ +. +++.+++++ ++
T Consensus 497 ------GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLp-NIIagr~VvPEllqgQ~~~tpe~La~~l-~l 568 (608)
T PRK01021 497 ------GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLP-NIILGSTIFPEFIGGKKDFQPEEVAAAL-DI 568 (608)
T ss_pred ------CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehh-HHhcCCCcchhhcCCcccCCHHHHHHHH-HH
Confidence 78999999999999885 221 111 1121111 11122 23 899999996 88
Q ss_pred HHcCcHHHHHHHHHHHHHHH
Q 039338 446 VSEGPMRLAQRGEACRQYAA 465 (493)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~ 465 (493)
+.| ++.++++.+...+..+
T Consensus 569 L~d-~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 569 LKT-SQSKEKQKDACRDLYQ 587 (608)
T ss_pred hcC-HHHHHHHHHHHHHHHH
Confidence 887 6666666665554433
No 129
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.84 E-value=1.4e-07 Score=92.58 Aligned_cols=194 Identities=15% Similarity=0.249 Sum_probs=107.8
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccCh-
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGH- 326 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~- 326 (493)
......|.+++.|+...+.+.+.++.+.+++.+...+-....+.........+++.++++.++ .+|+|+-.+......
T Consensus 130 ~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~-k~ILyaPT~R~~~~~~ 208 (369)
T PF04464_consen 130 RNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDK-KVILYAPTWRDNSSNE 208 (369)
T ss_dssp HHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS--EEEEEE----GGG--G
T ss_pred hhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCC-cEEEEeeccccccccc
Confidence 346688999999999999999999988777766554433333333333356788889998887 477788766542222
Q ss_pred -----HHH--HHHHHHHHhhCCCeEEEEEeCCCcHHHHh---hhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCC
Q 039338 327 -----PLL--HEAFSKLMVKYPDVYLIVAGSGPWEQRYK---DFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLD 396 (493)
Q Consensus 327 -----~~l--l~a~~~l~~~~~~~~l~i~G~g~~~~~~~---~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~ 396 (493)
... .+.+..+ ...++.+++-.......... ...++|.+...- +++.+++..||++|. -++
T Consensus 209 ~~~~~~~~~~~~~l~~~--~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLIT------DyS 278 (369)
T PF04464_consen 209 YFKFFFSDLDFEKLNFL--LKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILIT------DYS 278 (369)
T ss_dssp GSS----TT-HHHHHHH--HTTTEEEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEE------SS-
T ss_pred cccccccccCHHHHHHH--hCCCcEEEEEeCchhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEEE------ech
Confidence 112 2333322 23588888876533222222 233777776654 489999999999994 235
Q ss_pred hHHHHHHHcCCcEEec--CCCCCcc--ce---eeeCcceEEECCCHHHHHHHHHHHHHcCcHHHH
Q 039338 397 LTLMEAMMSGKPVMAS--RFPSIKG--TI---VVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLA 454 (493)
Q Consensus 397 ~~~~EAm~~G~PvI~s--~~~~~~~--e~---v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~ 454 (493)
.+++|++.+++|||-. |...... .+ ..+...|-.+. +.++|.++|.+++++ .+...
T Consensus 279 Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~-~~~eL~~~i~~~~~~-~~~~~ 341 (369)
T PF04464_consen 279 SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY-NFEELIEAIENIIEN-PDEYK 341 (369)
T ss_dssp THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES-SHHHHHHHHTTHHHH-HHHTH
T ss_pred hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC-CHHHHHHHHHhhhhC-CHHHH
Confidence 5999999999999964 3211110 01 12334455555 899999999999887 54433
No 130
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.76 E-value=3.7e-05 Score=75.76 Aligned_cols=201 Identities=11% Similarity=0.095 Sum_probs=109.3
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcc---cchhhhhhhCCCCCCcEEEEEecccccc-
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLS---LGQSFRSRIGIPKNASLVLGVAGRLVKD- 323 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~---~~~~~r~~~~i~~~~~~~i~~~Gr~~~~- 323 (493)
.+++++|.|.+=.+...+.+.+ .|++..++.+.+..+=. +.+... ....+...++....++.+-+.+..+.+.
T Consensus 172 ~vl~~~~~ItvRD~~S~~~Lk~-lGv~~~~v~~~aDpAF~--L~~~~~~~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~ 248 (426)
T PRK10017 172 YVFGHCDALILRESVSLDLMKR-SNITTAKVEHGVDTAWL--VDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFD 248 (426)
T ss_pred HHHhcCCEEEEccHHHHHHHHH-hCCCccceEEecChhhh--CCccccccccchhhhhhhcccccCCEEEEEeccccccc
Confidence 5578999999999999998877 69887778776643211 111100 0001111222223333333333333211
Q ss_pred c-------C-hHHHHHHHHHHHhhCCCeEEEEEeC-----CCc-HHHHhhh----c--CcE-EEecCCCHHHHHHHHHHc
Q 039338 324 K-------G-HPLLHEAFSKLMVKYPDVYLIVAGS-----GPW-EQRYKDF----G--HQV-LVMGSMSPAELRAFYNAI 382 (493)
Q Consensus 324 K-------g-~~~ll~a~~~l~~~~~~~~l~i~G~-----g~~-~~~~~~l----~--~~V-~~~g~~~~~~~~~~~~~a 382 (493)
+ . ...+.+++..+.+++-++.|+-.-. ++. ....+++ . .++ .+.+..+..++..+++++
T Consensus 249 ~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~ 328 (426)
T PRK10017 249 KRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGAC 328 (426)
T ss_pred ccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhC
Confidence 1 1 1345566676666543444333211 122 1212222 2 223 334445567899999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeee-CcceEEEC--C-CHHHHHHHHHHHHHcCcHHHHHHHH
Q 039338 383 DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD-DEFGFMFA--P-NVESLHKTLEAAVSEGPMRLAQRGE 458 (493)
Q Consensus 383 dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~-~~~G~~~~--~-d~~~l~~~i~~ll~~~~~~~~~~~~ 458 (493)
|++|-.-++ .++=|++.|+|+|+-....=...+..+ +...++++ . +.++|.+.+.+++++ .+.+++.-+
T Consensus 329 dl~ig~RlH------a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~-r~~~~~~l~ 401 (426)
T PRK10017 329 ELTVGTRLH------SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ-LPALNARLA 401 (426)
T ss_pred CEEEEecch------HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhC-HHHHHHHHH
Confidence 999965544 677799999999987542211112211 11223333 3 788999999999998 555444333
No 131
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.75 E-value=3.1e-05 Score=77.84 Aligned_cols=202 Identities=13% Similarity=0.061 Sum_probs=105.6
Q ss_pred hhccCCeEEEcChh-HHHHHHHHhCC-CCCcEEEecCCccCCCcc--C----CcccchhhhhhhCCCCCCcEEEEEeccc
Q 039338 249 FFNKYAHHVAISDS-CGEMLRDVYQI-PSERVHVILNGINENEYG--V----DLSLGQSFRSRIGIPKNASLVLGVAGRL 320 (493)
Q Consensus 249 ~~~~~d~ii~~S~~-~~~~~~~~~~~-~~~~v~vi~ngvd~~~~~--~----~~~~~~~~r~~~~i~~~~~~~i~~~Gr~ 320 (493)
...+++.|++.|-+ +...+.+.+.- -..++..|.+-+...... . .......+.+-+.-.+.++.+++..|..
T Consensus 205 ~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~ 284 (459)
T PLN02448 205 WVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSF 284 (459)
T ss_pred hcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeeccc
Confidence 34567899998877 33332332210 012455555433210000 0 0000012333333333444777788887
Q ss_pred cc--ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh-hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 321 VK--DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD-FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 321 ~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~-l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
.. ...+..++++++.. +..++++..++. ..+.+ ..+++.+.+++|+.++. +..++..+-+ + .| .+
T Consensus 285 ~~~~~~~~~~~~~~l~~~-----~~~~lw~~~~~~-~~~~~~~~~~~~v~~w~pQ~~iL---~h~~v~~fvt-H-gG-~n 352 (459)
T PLN02448 285 LSVSSAQMDEIAAGLRDS-----GVRFLWVARGEA-SRLKEICGDMGLVVPWCDQLKVL---CHSSVGGFWT-H-CG-WN 352 (459)
T ss_pred ccCCHHHHHHHHHHHHhC-----CCCEEEEEcCch-hhHhHhccCCEEEeccCCHHHHh---ccCccceEEe-c-Cc-hh
Confidence 43 22234444444433 456665544331 12223 23678888999888654 4566633323 2 34 45
Q ss_pred HHHHHHHcCCcEEecCCCCCcc---ceeeeC-cceEEEC-------C-CHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIKG---TIVVDD-EFGFMFA-------P-NVESLHKTLEAAVSEGPMRLAQRGEACRQ 462 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~---e~v~~~-~~G~~~~-------~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 462 (493)
+++||+++|+|+|+-...+-.. ..+.+. +.|+-+. . +.+++.+++++++.++.+.-+++++++.+
T Consensus 353 S~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 353 STLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred HHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999986543110 123332 3455552 2 77999999999998622333444444443
No 132
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=1.2e-06 Score=77.80 Aligned_cols=285 Identities=13% Similarity=0.107 Sum_probs=144.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
|||+|++...+. ..+|.-.++..|+++|.++|+.+..++.+... ...... ...+....
T Consensus 1 M~V~i~~Dgg~~--iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e--~~~~~~----------~~~f~~~~-------- 58 (318)
T COG3980 1 MKVLIRCDGGLE--IGMGHVMRTLTLARELEKRGFACLFLTKQDIE--AIIHKV----------YEGFKVLE-------- 58 (318)
T ss_pred CcEEEEecCCcc--cCcchhhhHHHHHHHHHhcCceEEEecccchh--hhhhhh----------hhhcccee--------
Confidence 899999997653 77888889999999999999888888876533 100000 00000000
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccchhHHhhhccC----cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHH
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVALPHWLARNVT----NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGV 239 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~~~~~~~~~~p----~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (493)
......+++.++|++++.++++..-..+.+. +.++.+-+.....+
T Consensus 59 ----~~~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~--------------------------- 107 (318)
T COG3980 59 ----GRGNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSF--------------------------- 107 (318)
T ss_pred ----eecccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccch---------------------------
Confidence 0001145588999999998876654433321 12333332211100
Q ss_pred HHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 240 MLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 240 ~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
+|....++.... . .+.|+.-+.+.. +..|.+.....+. =...|++.-..+.. -+++..|.
T Consensus 108 -------------~d~d~ivN~~~~-a-~~~y~~v~~k~~-~~lGp~y~~lr~e---F~~~r~~~~~r~~r-~ilI~lGG 167 (318)
T COG3980 108 -------------KDNDLIVNAILN-A-NDYYGLVPNKTR-YYLGPGYAPLRPE---FYALREENTERPKR-DILITLGG 167 (318)
T ss_pred -------------hhhHhhhhhhhc-c-hhhccccCcceE-EEecCCceeccHH---HHHhHHHHhhcchh-eEEEEccC
Confidence 011111111111 1 112343333432 2334332211111 01122222112122 24556665
Q ss_pred cccccChHHHHHHHHHHHhhCCCeEEEEEeCC-CcHHHHhh---hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCC
Q 039338 320 LVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSG-PWEQRYKD---FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGL 395 (493)
Q Consensus 320 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g-~~~~~~~~---l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~ 395 (493)
-+ .|+ +.+++++.+.+..-+++++ +|++ +....+++ ..+++.++-.. ++++++|..||..+.. -
T Consensus 168 sD-pk~--lt~kvl~~L~~~~~nl~iV-~gs~~p~l~~l~k~~~~~~~i~~~~~~--~dma~LMke~d~aI~A------a 235 (318)
T COG3980 168 SD-PKN--LTLKVLAELEQKNVNLHIV-VGSSNPTLKNLRKRAEKYPNINLYIDT--NDMAELMKEADLAISA------A 235 (318)
T ss_pred CC-hhh--hHHHHHHHhhccCeeEEEE-ecCCCcchhHHHHHHhhCCCeeeEecc--hhHHHHHHhcchheec------c
Confidence 43 344 3567777776653234333 3432 33333333 23788777665 7999999999999952 3
Q ss_pred ChHHHHHHHcCCcEEecCC----CCCccceeee----CcceEEECCCHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 396 DLTLMEAMMSGKPVMASRF----PSIKGTIVVD----DEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 396 ~~~~~EAm~~G~PvI~s~~----~~~~~e~v~~----~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
|.++.||+..|+|.++-.. -... ..... ...|+-. ..+.....+.++..| ...++.+.
T Consensus 236 GstlyEa~~lgvP~l~l~~a~NQ~~~a-~~f~~lg~~~~l~~~l--~~~~~~~~~~~i~~d-~~~rk~l~ 301 (318)
T COG3980 236 GSTLYEALLLGVPSLVLPLAENQIATA-KEFEALGIIKQLGYHL--KDLAKDYEILQIQKD-YARRKNLS 301 (318)
T ss_pred chHHHHHHHhcCCceEEeeeccHHHHH-HHHHhcCchhhccCCC--chHHHHHHHHHhhhC-HHHhhhhh
Confidence 6799999999999433211 1111 00100 1122221 336666777777777 55554443
No 133
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.64 E-value=4.8e-07 Score=75.27 Aligned_cols=102 Identities=22% Similarity=0.187 Sum_probs=62.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeec-CCCCcccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHE-GEADKWRY 163 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 163 (493)
||++++... +.++.++++.|.++|+||++++..... . .... .....+.... ........
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~--~-~~~~--------~~~i~~~~~~~~~k~~~~~ 60 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDY--E-KYEI--------IEGIKVIRLPSPRKSPLNY 60 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCc--h-hhhH--------hCCeEEEEecCCCCccHHH
Confidence 689998742 347889999999999999999995443 1 1111 1111112221 11122333
Q ss_pred ccchHHHHHHhcCCCCcEEEeCccc---hhHHhh---hc-cCcEEEEeccch
Q 039338 164 SKGWEQFDEENQREPFDVVHSESVA---LPHWLA---RN-VTNLAVSWHGIA 208 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~~~~---~~~~~~---~~-~p~~v~~~h~~~ 208 (493)
.. ...+.+.+++.+||+||+|+.. +.+.++ .+ .| ++.+.||..
T Consensus 61 ~~-~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~-~i~~~hg~~ 110 (139)
T PF13477_consen 61 IK-YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKK-VIYTVHGSD 110 (139)
T ss_pred HH-HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCC-EEEEecCCe
Confidence 33 3477888889999999999853 223222 23 45 999999853
No 134
>PLN02208 glycosyltransferase family protein
Probab=98.54 E-value=0.00029 Score=70.15 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=112.1
Q ss_pred hhccCCeEEEcChhHHH-HHHHHhCCC-CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccCh
Q 039338 249 FFNKYAHHVAISDSCGE-MLRDVYQIP-SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGH 326 (493)
Q Consensus 249 ~~~~~d~ii~~S~~~~~-~~~~~~~~~-~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~ 326 (493)
.+.++|.+++.|-...+ .+.+.+.-+ ..++..|..-..... .......++.+-+.-.+.+..+++.+|+... -..
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~--~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~-l~~ 266 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD--TSKPLEEQWSHFLSGFPPKSVVFCSLGSQII-LEK 266 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC--CCCCCHHHHHHHHhcCCCCcEEEEecccccc-CCH
Confidence 45689999998865544 333323211 135655554321110 0011123444555444444578888998763 234
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeC-C--CcH-----HHHhh-hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 327 PLLHEAFSKLMVKYPDVYLIVAGS-G--PWE-----QRYKD-FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 327 ~~ll~a~~~l~~~~~~~~l~i~G~-g--~~~-----~~~~~-l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
+.+.+.+..+...+-.+.+++--. + ... ...++ .+.++.+.++.|+.+ +++...+.++-| + .| -+
T Consensus 267 ~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~---iL~H~~v~~Fvt-H-cG-~n 340 (442)
T PLN02208 267 DQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPL---ILDHPSIGCFVN-H-CG-PG 340 (442)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHH---HhcCCccCeEEc-c-CC-ch
Confidence 456666555533323343333211 1 111 11111 126888889999886 455566544445 2 34 46
Q ss_pred HHHHHHHcCCcEEecCCCCCc---cceeee-CcceEEEC------CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 039338 398 TLMEAMMSGKPVMASRFPSIK---GTIVVD-DEFGFMFA------PNVESLHKTLEAAVSEGPMRLAQRGEACRQY 463 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~---~e~v~~-~~~G~~~~------~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 463 (493)
+++||+++|+|+|+...-+-. ...+.+ -+.|+.+. .+.+++.++|.++++++.+..+++.+++++.
T Consensus 341 S~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 341 TIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 999999999999998643211 012222 35676663 2678999999999987324445555555543
No 135
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.54 E-value=1.6e-05 Score=73.16 Aligned_cols=317 Identities=15% Similarity=0.100 Sum_probs=162.1
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEAD 159 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (493)
+.|||++.+++. ..=|.-+++..++.+|.+. |++|.+++.....-.-+...-.+.+ ..+.+... ..+
T Consensus 8 ~~~Ri~~Yshd~----~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V-----~LPsl~k~--~~G 76 (400)
T COG4671 8 KRPRILFYSHDL----LGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFV-----KLPSLIKG--DNG 76 (400)
T ss_pred ccceEEEEehhh----ccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceE-----ecCceEec--CCC
Confidence 456999999853 4457788899999999998 9999999987654111110111100 00111100 001
Q ss_pred cccc------ccch-----HHHHHHhcCCCCcEEEeCccchh---------HHhhhccCcEEEEeccchhhhhhhhhhhh
Q 039338 160 KWRY------SKGW-----EQFDEENQREPFDVVHSESVALP---------HWLARNVTNLAVSWHGIALESLQSGIFQD 219 (493)
Q Consensus 160 ~~~~------~~~~-----~~~~~~~~~~~~DiI~~~~~~~~---------~~~~~~~p~~v~~~h~~~~~~~~~~~~~~ 219 (493)
.+.. .... ..+....+..+|||+++...++. .++...-++.+.-+.++. |.
T Consensus 77 ~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~------D~--- 147 (400)
T COG4671 77 EYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIR------DI--- 147 (400)
T ss_pred ceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhh------hc---
Confidence 1100 1111 12333346889999999764322 222222233444443321 00
Q ss_pred hhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCC-CcEEEecCCccCCCccCCcccch
Q 039338 220 LTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPS-ERVHVILNGINENEYGVDLSLGQ 298 (493)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~-~~v~vi~ngvd~~~~~~~~~~~~ 298 (493)
+......+-....... +-+.+|.|.+..+-.-..+.+.|+++. -+-.+.+.|.=.......+...
T Consensus 148 ----p~~~~~~w~~~~~~~~---------I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~- 213 (400)
T COG4671 148 ----PQELEADWRRAETVRL---------INRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPP- 213 (400)
T ss_pred ----hhhhccchhhhHHHHH---------HHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCC-
Confidence 0000000011111112 223567777776655544555465432 1334445554311000000000
Q ss_pred hhhhhhCCCCCCcEEEEEecccccccChHHH---HHHHHHHHhhCCCeEEEEEeCCCc---HHHHhhhc---CcEEEecC
Q 039338 299 SFRSRIGIPKNASLVLGVAGRLVKDKGHPLL---HEAFSKLMVKYPDVYLIVAGSGPW---EQRYKDFG---HQVLVMGS 369 (493)
Q Consensus 299 ~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~l---l~a~~~l~~~~~~~~l~i~G~g~~---~~~~~~l~---~~V~~~g~ 369 (493)
....++..+++.+|.=. -|-+++ ++|...+..-.+ .-+++.|..-- ++.+...+ ++|.+..+
T Consensus 214 ------~~~pE~~~Ilvs~GGG~--dG~eLi~~~l~A~~~l~~l~~-~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f 284 (400)
T COG4671 214 ------HEAPEGFDILVSVGGGA--DGAELIETALAAAQLLAGLNH-KWLIVTGPFMPEAQRQKLLASAPKRPHISIFEF 284 (400)
T ss_pred ------cCCCccceEEEecCCCh--hhHHHHHHHHHHhhhCCCCCc-ceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh
Confidence 01123336677777533 444444 333333322211 23556664322 22333332 78999999
Q ss_pred CCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccc-eeee------CcceEEECC--CHHHHHH
Q 039338 370 MSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGT-IVVD------DEFGFMFAP--NVESLHK 440 (493)
Q Consensus 370 ~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e-~v~~------~~~G~~~~~--d~~~l~~ 440 (493)
. +++..+++.|+..|.-+ |+ +|++|-+++|||.+.-....-.+| ++.. |-...+.+. +++.|++
T Consensus 285 ~--~~~~~ll~gA~~vVSm~----GY-NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~ 357 (400)
T COG4671 285 R--NDFESLLAGARLVVSMG----GY-NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLAD 357 (400)
T ss_pred h--hhHHHHHHhhheeeecc----cc-hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHH
Confidence 7 79999999999999432 33 499999999999887765443322 1111 333445554 7899999
Q ss_pred HHHHHHHc
Q 039338 441 TLEAAVSE 448 (493)
Q Consensus 441 ~i~~ll~~ 448 (493)
+|..+++.
T Consensus 358 al~~~l~~ 365 (400)
T COG4671 358 ALKAALAR 365 (400)
T ss_pred HHHhcccC
Confidence 99998884
No 136
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.49 E-value=2.2e-05 Score=71.02 Aligned_cols=297 Identities=11% Similarity=0.105 Sum_probs=164.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc--
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW-- 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (493)
|||++=..+ .-..++..++...|.++||+|.+-|..... ....-. ..+.+...+........
T Consensus 1 mkVwiDI~n-------~~hvhfFk~lI~elekkG~ev~iT~rd~~~--v~~LLd-------~ygf~~~~Igk~g~~tl~~ 64 (346)
T COG1817 1 MKVWIDIGN-------PPHVHFFKNLIWELEKKGHEVLITCRDFGV--VTELLD-------LYGFPYKSIGKHGGVTLKE 64 (346)
T ss_pred CeEEEEcCC-------cchhhHHHHHHHHHHhCCeEEEEEEeecCc--HHHHHH-------HhCCCeEeecccCCccHHH
Confidence 667766543 223567889999999999999998877665 111111 01111111111110111
Q ss_pred ---ccccchHHHHHHhcCCCCcEEEe-CccchhHH-hhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHH
Q 039338 162 ---RYSKGWEQFDEENQREPFDVVHS-ESVALPHW-LARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSL 236 (493)
Q Consensus 162 ---~~~~~~~~~~~~~~~~~~DiI~~-~~~~~~~~-~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
........+.+++.+.+||+.+. |++.++.. +..++| .+...... |+...
T Consensus 65 Kl~~~~eR~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~p-sIi~~D~e-----hA~~q------------------- 119 (346)
T COG1817 65 KLLESAERVYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIP-SIIFVDNE-----HAEAQ------------------- 119 (346)
T ss_pred HHHHHHHHHHHHHHHHhhcCCceEeecCCcchhhHHhhcCCc-eEEecCCh-----hHHHH-------------------
Confidence 11122334566667899999876 44444332 233445 33333221 11111
Q ss_pred HHHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEE
Q 039338 237 QGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGV 316 (493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~ 316 (493)
....++-|+.+++++..-.+.+.+ +|-++.++ +-.||+-.-.....-.....+-+++|+..+.+++++=
T Consensus 120 ---------nkl~~Pla~~ii~P~~~~~~~~~~-~G~~p~~i-~~~~giae~~~v~~f~pd~evlkeLgl~~~~~yIVmR 188 (346)
T COG1817 120 ---------NKLTLPLADVIITPEAIDEEELLD-FGADPNKI-SGYNGIAELANVYGFVPDPEVLKELGLEEGETYIVMR 188 (346)
T ss_pred ---------hhcchhhhhheecccccchHHHHH-hCCCccce-ecccceeEEeecccCCCCHHHHHHcCCCCCCceEEEe
Confidence 113456788888888777777666 56554443 3455654322111122234678899999976565542
Q ss_pred eccc-----ccccChHHHHHHHHHHHhhCCCeEEEEEeC-CCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 317 AGRL-----VKDKGHPLLHEAFSKLMVKYPDVYLIVAGS-GPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 317 ~Gr~-----~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
.-.+ ..+++.+.+.++++.+.+.+ .+++-+ ...++..+... +++..... -+-.+++-.|++++-
T Consensus 189 pe~~~A~y~~g~~~~~~~~~li~~l~k~g----iV~ipr~~~~~eife~~~-n~i~pk~~--vD~l~Llyya~lvig--- 258 (346)
T COG1817 189 PEPWGAHYDNGDRGISVLPDLIKELKKYG----IVLIPREKEQAEIFEGYR-NIIIPKKA--VDTLSLLYYATLVIG--- 258 (346)
T ss_pred eccccceeeccccchhhHHHHHHHHHhCc----EEEecCchhHHHHHhhhc-cccCCccc--ccHHHHHhhhheeec---
Confidence 2221 23567777888888886643 444443 33333333322 22221111 244457778888882
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCC---CCccceeeeCcceEEECC-CHHHHHHHHHHHHHc
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFP---SIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSE 448 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~---~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~ 448 (493)
+| |+-.-||...|+|.|++.-| +.. +.. -+.|.++.. |+.+..+...+.+.+
T Consensus 259 --~g-gTMarEaAlLGtpaIs~~pGkll~vd-k~l--ie~G~~~~s~~~~~~~~~a~~~l~~ 314 (346)
T COG1817 259 --AG-GTMAREAALLGTPAISCYPGKLLAVD-KYL--IEKGLLYHSTDEIAIVEYAVRNLKY 314 (346)
T ss_pred --CC-chHHHHHHHhCCceEEecCCcccccc-HHH--HhcCceeecCCHHHHHHHHHHHhhc
Confidence 33 67789999999999999743 122 222 246888887 888777777777666
No 137
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.48 E-value=7.5e-05 Score=68.25 Aligned_cols=210 Identities=13% Similarity=0.144 Sum_probs=124.4
Q ss_pred HhhccCCeEEEcChhHHHH-HHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccc-ccccC
Q 039338 248 RFFNKYAHHVAISDSCGEM-LRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRL-VKDKG 325 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~-~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~-~~~Kg 325 (493)
...++..+|++ +...... -++.++++.+ ....|.-.++.. ...... -.+.++++| -+|+- ++..+
T Consensus 94 ~aq~rvg~v~a-trGD~~~~a~~~~~v~~~-llyfpt~m~~~l-~~~~~~---------~~~~~~~tI-lvGNSgd~SN~ 160 (322)
T PRK02797 94 LAQKRVGHVFA-TRGDLSYFAQRHPKVPGS-LLYFPTRMDPSL-NTMAND---------RQRAGKMTI-LVGNSGDRSNR 160 (322)
T ss_pred HHHhhcCeEEE-ecchHHHHHHhcCCCCcc-EEecCCcchhhh-cccccc---------ccCCCceEE-EEeCCCCCccc
Confidence 34578889999 4444444 5565666543 323332222211 111100 012334666 45554 56677
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEE-eCC-CcHHHHhhh--------c-CcEE-EecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 326 HPLLHEAFSKLMVKYPDVYLIVA-GSG-PWEQRYKDF--------G-HQVL-VMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 326 ~~~ll~a~~~l~~~~~~~~l~i~-G~g-~~~~~~~~l--------~-~~V~-~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+..+++++.+... .++++++- |-+ ..+++.++. + +++. +..+++-+|..++++.||+.++.-.+.+
T Consensus 161 Hie~L~~l~~~~~--~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQ 238 (322)
T PRK02797 161 HIEALRALHQQFG--DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQ 238 (322)
T ss_pred HHHHHHHHHHHhC--CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhh
Confidence 8777787776644 57887763 432 123333321 2 4655 4567899999999999999999877778
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCH
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTA 470 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 470 (493)
|+|+ ++=.+.+|+||+.++....-.++. +.+.-++++. |...+.++= +++....++.+. |+.
T Consensus 239 giGn-l~lLi~~G~~v~l~r~n~fwqdl~-e~gv~Vlf~~d~L~~~~v~e~~-----------rql~~~dk~~I~--Ff~ 303 (322)
T PRK02797 239 GIGT-LCLLIQLGKPVVLSRDNPFWQDLT-EQGLPVLFTGDDLDEDIVREAQ-----------RQLASVDKNIIA--FFS 303 (322)
T ss_pred HHhH-HHHHHHCCCcEEEecCCchHHHHH-hCCCeEEecCCcccHHHHHHHH-----------HHHHhhCcceee--ecC
Confidence 9985 555999999999886544442443 3334444443 333333322 223333334443 999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 039338 471 NKMALAYERLFLCIKNE 487 (493)
Q Consensus 471 ~~~~~~~~~~~~~i~~~ 487 (493)
+..++.|.+++.....+
T Consensus 304 pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 304 PNYLQGWRNALAIAAGE 320 (322)
T ss_pred HhHHHHHHHHHHHhhCC
Confidence 99999999999877654
No 138
>PLN03007 UDP-glucosyltransferase family protein
Probab=98.48 E-value=0.00074 Score=68.37 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=77.4
Q ss_pred hhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC--------cHHHH-hh-hcCcEEEecCC
Q 039338 301 RSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP--------WEQRY-KD-FGHQVLVMGSM 370 (493)
Q Consensus 301 r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~--------~~~~~-~~-l~~~V~~~g~~ 370 (493)
.+-+.-.++++.+++.+|+.... ..+.+.+.+..+.....++ ++.++... ..+.+ ++ ...++.+.+++
T Consensus 276 ~~wLd~~~~~svvyvsfGS~~~~-~~~~~~~~~~~l~~~~~~f-lw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~ 353 (482)
T PLN03007 276 LKWLDSKKPDSVIYLSFGSVASF-KNEQLFEIAAGLEGSGQNF-IWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWA 353 (482)
T ss_pred HHHHhcCCCCceEEEeecCCcCC-CHHHHHHHHHHHHHCCCCE-EEEEecCCcccchhhcCCHHHHHHhccCCEEEecCC
Confidence 34443334445777888987532 1233444444443322222 34444311 11111 11 23688999999
Q ss_pred CHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeee-CcceEEE----------CC-CH
Q 039338 371 SPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVD-DEFGFMF----------AP-NV 435 (493)
Q Consensus 371 ~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~-~~~G~~~----------~~-d~ 435 (493)
|+. ++++.+++.++-+ + .| -++++||+++|+|+|+....+-.. ..+.+ -+.|+-+ +. +.
T Consensus 354 PQ~---~iL~h~~v~~fvt-H-~G-~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 427 (482)
T PLN03007 354 PQV---LILDHQATGGFVT-H-CG-WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISR 427 (482)
T ss_pred CHH---HHhccCccceeee-c-Cc-chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccH
Confidence 876 4666676633334 2 34 459999999999999986433110 11111 1233322 23 78
Q ss_pred HHHHHHHHHHHHc
Q 039338 436 ESLHKTLEAAVSE 448 (493)
Q Consensus 436 ~~l~~~i~~ll~~ 448 (493)
+++.+++++++.+
T Consensus 428 ~~l~~av~~~m~~ 440 (482)
T PLN03007 428 EKVEKAVREVIVG 440 (482)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999987
No 139
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=98.47 E-value=1e-07 Score=87.11 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=37.3
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||++|+.+++|....||.+.++..|.++|+++||+|.|+++....
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~ 45 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGF 45 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchh
Confidence 799999999887899999999999999999999999999997744
No 140
>PLN00414 glycosyltransferase family protein
Probab=98.44 E-value=0.0015 Score=65.16 Aligned_cols=210 Identities=12% Similarity=0.040 Sum_probs=113.6
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhCCC-CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccC
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQIP-SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKG 325 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~~~-~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg 325 (493)
..+.+++.+++.|-...+ .+.+.+.-. ..++..|.+-+....-..........-+-+.-.+.+..+.+.+|+.... .
T Consensus 188 ~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~-~ 266 (446)
T PLN00414 188 KGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFF-E 266 (446)
T ss_pred HhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccC-C
Confidence 345678999998865544 222222100 1245555443321100000011123444555455556888899987643 2
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEE---eCCC----cH-HHHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCC
Q 039338 326 HPLLHEAFSKLMVKYPDVYLIVA---GSGP----WE-QRYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLD 396 (493)
Q Consensus 326 ~~~ll~a~~~l~~~~~~~~l~i~---G~g~----~~-~~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~ 396 (493)
.+.+.+...-|...+.++-.++. |.+. .. ...++. +....+.|++|+.++... .+.+.+| + + .| -
T Consensus 267 ~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h-~~v~~fv--t-H-~G-~ 340 (446)
T PLN00414 267 KDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSH-PSVGCFV--N-H-CG-F 340 (446)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcC-CccceEE--e-c-Cc-h
Confidence 34556666655554444433332 2111 11 111122 255677799998865433 3335566 3 2 34 4
Q ss_pred hHHHHHHHcCCcEEecCCCCCc---ccee-eeCcceEEEC-----C-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 039338 397 LTLMEAMMSGKPVMASRFPSIK---GTIV-VDDEFGFMFA-----P-NVESLHKTLEAAVSEGPMRLAQRGEACRQYA 464 (493)
Q Consensus 397 ~~~~EAm~~G~PvI~s~~~~~~---~e~v-~~~~~G~~~~-----~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 464 (493)
++++||+++|+|+|+....+-. ...+ +.-+.|+.+. . +.+++.+++++++.++.+..+++.+++++.-
T Consensus 341 nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 341 GSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLK 418 (446)
T ss_pred hHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 6999999999999998643211 0223 2346676663 2 7899999999999873345555666665543
No 141
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.44 E-value=6.4e-05 Score=69.66 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=123.0
Q ss_pred hccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccc-ccccChHH
Q 039338 250 FNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRL-VKDKGHPL 328 (493)
Q Consensus 250 ~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~-~~~Kg~~~ 328 (493)
.++..+|++ +......+++.|+-.+..+..-|.-+|...-..... -..++++.| .+|+- ++..++-.
T Consensus 135 q~rvg~V~a-t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~----------~~~~~~ltI-LvGNSgd~sNnHie 202 (360)
T PF07429_consen 135 QKRVGHVFA-TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKN----------KKNKGKLTI-LVGNSGDPSNNHIE 202 (360)
T ss_pred HhhcCeEEE-EcchHHHHHHHcCCCCceEEEcCCCCchhhhccccc----------cCCCCceEE-EEcCCCCCCccHHH
Confidence 456677766 567777888877533333444444444332111111 012334666 45554 55667767
Q ss_pred HHHHHHHHHhhCCCeEEEE-EeCCC-cHHHHhhh--------c-CcEEE-ecCCCHHHHHHHHHHcCEEEeCCCCCCCCC
Q 039338 329 LHEAFSKLMVKYPDVYLIV-AGSGP-WEQRYKDF--------G-HQVLV-MGSMSPAELRAFYNAIDIFVNPTLRPQGLD 396 (493)
Q Consensus 329 ll~a~~~l~~~~~~~~l~i-~G~g~-~~~~~~~l--------~-~~V~~-~g~~~~~~~~~~~~~adv~v~ps~~~eg~~ 396 (493)
+++++++.. +.++++++ .|-|. .+++.+++ + +++.. ..+++-+|..++++.||+.++...+.+|.|
T Consensus 203 aL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiG 280 (360)
T PF07429_consen 203 ALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIG 280 (360)
T ss_pred HHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHh
Confidence 777666543 34677766 34443 23333322 2 46765 579999999999999999999998889998
Q ss_pred hHHHHHHHcCCcEEecCCCCCccceeeeCcceEEEC-C--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHHHH
Q 039338 397 LTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFA-P--NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTANKM 473 (493)
Q Consensus 397 ~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~-~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~~~~ 473 (493)
+ ++=.+.+|+||+.++....-.+ +.+.+.-+++. + |...+.++=+++..-+. +.+ .|.....
T Consensus 281 n-I~lLl~~G~~v~L~~~np~~~~-l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk-----------~~i--aFf~pny 345 (360)
T PF07429_consen 281 N-ICLLLQLGKKVFLSRDNPFWQD-LKEQGIPVLFYGDELDEALVREAQRQLANVDK-----------QQI--AFFAPNY 345 (360)
T ss_pred H-HHHHHHcCCeEEEecCChHHHH-HHhCCCeEEeccccCCHHHHHHHHHHHhhCcc-----------cce--eeeCCch
Confidence 5 5559999999999976665533 34444444444 2 56666665555543311 111 1566666
Q ss_pred HHHHHHHHHHH
Q 039338 474 ALAYERLFLCI 484 (493)
Q Consensus 474 ~~~~~~~~~~i 484 (493)
.+.|.+.+...
T Consensus 346 ~~~w~~~l~~~ 356 (360)
T PF07429_consen 346 LQGWRQALRLA 356 (360)
T ss_pred HHHHHHHHHHH
Confidence 67776666543
No 142
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.40 E-value=2.2e-06 Score=81.87 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=78.9
Q ss_pred ccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccccc--ccChHH
Q 039338 251 NKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVK--DKGHPL 328 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~--~Kg~~~ 328 (493)
+.+|++.++=++..+.+ |+ ++.++.|++-... ... +.. ++++ +.+.++-|+-.. .+....
T Consensus 126 k~~d~vl~ifPFE~~~y----g~---~~~~VGhPl~d~~-~~~-------~~~--~~~~-~~I~llPGSR~~Ei~~llP~ 187 (347)
T PRK14089 126 KYCDFLASILPFEVQFY----QS---KATYVGHPLLDEI-KEF-------KKD--LDKE-GTIAFMPGSRKSEIKRLMPI 187 (347)
T ss_pred HHHhhhhccCCCCHHHh----CC---CCEEECCcHHHhh-hhh-------hhh--cCCC-CEEEEECCCCHHHHHHHHHH
Confidence 34566666656555554 43 4567777753321 110 111 2222 466667776432 345567
Q ss_pred HHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhh-c--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHc
Q 039338 329 LHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDF-G--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMS 405 (493)
Q Consensus 329 ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l-~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~ 405 (493)
+++++.++.++. .++++.|.... +.+++. . ..+.+.+ +..++|++||+++..| |++.+|++.+
T Consensus 188 ~~~aa~~L~~~~--~~~~i~~a~~~-~~i~~~~~~~~~~~~~~-----~~~~~m~~aDlal~~S------GT~TLE~al~ 253 (347)
T PRK14089 188 FKELAKKLEGKE--KILVVPSFFKG-KDLKEIYGDISEFEISY-----DTHKALLEAEFAFICS------GTATLEAALI 253 (347)
T ss_pred HHHHHHHHhhcC--cEEEEeCCCcH-HHHHHHHhcCCCcEEec-----cHHHHHHhhhHHHhcC------cHHHHHHHHh
Confidence 779999988753 67788776433 333332 1 2344442 4568999999999755 5677799999
Q ss_pred CCcEEec
Q 039338 406 GKPVMAS 412 (493)
Q Consensus 406 G~PvI~s 412 (493)
|+|.|..
T Consensus 254 g~P~Vv~ 260 (347)
T PRK14089 254 GTPFVLA 260 (347)
T ss_pred CCCEEEE
Confidence 9999885
No 143
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=98.36 E-value=0.0036 Score=62.57 Aligned_cols=189 Identities=15% Similarity=0.074 Sum_probs=101.8
Q ss_pred hccCCeEEEcChhHHH-HHHHHhCC-CCCcEEEecCCccCCCc-cCCcccchhhhhhhCCCCCCcEEEEEecccccccCh
Q 039338 250 FNKYAHHVAISDSCGE-MLRDVYQI-PSERVHVILNGINENEY-GVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGH 326 (493)
Q Consensus 250 ~~~~d~ii~~S~~~~~-~~~~~~~~-~~~~v~vi~ngvd~~~~-~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~ 326 (493)
..+++.|++.|-...+ .+.+.+.- ...++..|.+-.-.... ...........+-+.-.+.+..+.+.+|+... -..
T Consensus 201 ~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~-~~~ 279 (451)
T PLN02410 201 KRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLAL-MEI 279 (451)
T ss_pred cccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEcccccc-CCH
Confidence 4678999998865544 22222211 11245555432211000 00001111122333333344488889998763 233
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEeCCC----------cHHHHhhhcCcEEEecCCCHHHHHHHHHHcCE--EEeCCCCCCC
Q 039338 327 PLLHEAFSKLMVKYPDVYLIVAGSGP----------WEQRYKDFGHQVLVMGSMSPAELRAFYNAIDI--FVNPTLRPQG 394 (493)
Q Consensus 327 ~~ll~a~~~l~~~~~~~~l~i~G~g~----------~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv--~v~ps~~~eg 394 (493)
+.+.+.+.-|...+..+ ++++..+. .....++..++..+.+++|+.++ ++..++ +| + + .|
T Consensus 280 ~q~~ela~gLe~s~~~F-lWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~i---L~h~~v~~fv--t-H-~G 351 (451)
T PLN02410 280 NEVMETASGLDSSNQQF-LWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEV---LSHPAVGGFW--S-H-CG 351 (451)
T ss_pred HHHHHHHHHHHhcCCCe-EEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHH---hCCCccCeee--e-c-Cc
Confidence 44444444444433332 33343221 11223334577888899998864 555445 55 3 2 34
Q ss_pred CChHHHHHHHcCCcEEecCCCCCcc---ceeeeC-cceEEECC--CHHHHHHHHHHHHHc
Q 039338 395 LDLTLMEAMMSGKPVMASRFPSIKG---TIVVDD-EFGFMFAP--NVESLHKTLEAAVSE 448 (493)
Q Consensus 395 ~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~-~~G~~~~~--d~~~l~~~i~~ll~~ 448 (493)
+ ++++||+++|+|+|+....+-.. ..+.+. +.|+-+.. +.+++++++++++.+
T Consensus 352 ~-nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~ 410 (451)
T PLN02410 352 W-NSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVE 410 (451)
T ss_pred h-hHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcC
Confidence 3 59999999999999986533110 223333 57777743 889999999999977
No 144
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=4.7e-06 Score=78.36 Aligned_cols=245 Identities=13% Similarity=0.185 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCccc-------chh--------hhhh
Q 039338 239 VMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSL-------GQS--------FRSR 303 (493)
Q Consensus 239 ~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~-------~~~--------~r~~ 303 (493)
...++..|+.....|+.+.++|+-.+-...... ..++=.+.|||.+...|..-.+- +++ +...
T Consensus 239 IYHrYC~ERaa~h~AhVFTTVSeITa~EAeHlL--kRKPD~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~Gh 316 (692)
T KOG3742|consen 239 IYHRYCLERAAAHTAHVFTTVSEITALEAEHLL--KRKPDVITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGH 316 (692)
T ss_pred hHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH--hcCCCeeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 344555666667777778888876543332221 22334678999998887543211 111 1112
Q ss_pred hCCCCCCcEEEEEecccc-cccChHHHHHHHHHHHhh----CCC---eEEEEEeC-----------C-------------
Q 039338 304 IGIPKNASLVLGVAGRLV-KDKGHPLLHEAFSKLMVK----YPD---VYLIVAGS-----------G------------- 351 (493)
Q Consensus 304 ~~i~~~~~~~i~~~Gr~~-~~Kg~~~ll~a~~~l~~~----~~~---~~l~i~G~-----------g------------- 351 (493)
+..+-++.+.|..+||.. ..||-|.+++++++|.-. +.+ +.|.|.-. |
T Consensus 317 lDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgqAv~kqL~dtv~~ 396 (692)
T KOG3742|consen 317 LDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQAVRKQLWDTVNE 396 (692)
T ss_pred ccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccHHHHHHHHHHHHH
Confidence 344556668888999987 589999999999998542 122 12222211 0
Q ss_pred ------------------CcH-HHH--------hh---------h-----------------------------cCc--E
Q 039338 352 ------------------PWE-QRY--------KD---------F-----------------------------GHQ--V 364 (493)
Q Consensus 352 ------------------~~~-~~~--------~~---------l-----------------------------~~~--V 364 (493)
|.. +.+ ++ + .++ |
T Consensus 397 Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~~LFN~~~DRVKv 476 (692)
T KOG3742|consen 397 VKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRIGLFNSPSDRVKV 476 (692)
T ss_pred HHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhhhcccCcccceEE
Confidence 000 000 00 0 033 3
Q ss_pred EEecC-------CCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCC---ccceeee-CcceEEEC-
Q 039338 365 LVMGS-------MSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSI---KGTIVVD-DEFGFMFA- 432 (493)
Q Consensus 365 ~~~g~-------~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~---~~e~v~~-~~~G~~~~- 432 (493)
+|.+. +=.-+..++.+.|++.|+||. +|++|.+..|.--+|+|-|+|+..|. .+|.+.+ ...|+.+-
T Consensus 477 ifHPEFLss~sPllglDYeeFVRGCHLGVFPSY-YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvD 555 (692)
T KOG3742|consen 477 IFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSY-YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVD 555 (692)
T ss_pred EecHHHhccCCCCcCCCHHHHhccccccccccc-cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEe
Confidence 44331 112377889999999999996 49999999999999999999987654 3354544 34566542
Q ss_pred ------C-CHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHhhcc
Q 039338 433 ------P-NVESLHKTLEAAVSEGPMRLAQRGEACR-QYAASMFTANKMALAYERLFLCIKNET 488 (493)
Q Consensus 433 ------~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~-~~~~~~fs~~~~~~~~~~~~~~i~~~~ 488 (493)
. ++++|++-+.++... .+++++.++.| ++...-.+|..+...|.+.=.-.+.+-
T Consensus 556 RRfks~deSv~qL~~~m~~F~~q--sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL~r~ 617 (692)
T KOG3742|consen 556 RRFKSPDESVQQLASFMYEFCKQ--SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLALSRA 617 (692)
T ss_pred cccCChhhHHHHHHHHHHHHHHH--HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHHHhh
Confidence 1 567777777777765 34454444443 455566799998888877655555443
No 145
>PLN02210 UDP-glucosyl transferase
Probab=98.34 E-value=0.0035 Score=62.81 Aligned_cols=341 Identities=13% Similarity=0.066 Sum_probs=162.5
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHH--HHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEee--c-CC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVA--LARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFH--E-GE 157 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~--L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 157 (493)
+.+|+++.. ..-|.-.-+..|++. |+++|+.|+++++.... .. ...... ....+.+. . ..
T Consensus 8 ~~hvv~~P~------pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~--~~-~~~~~~------~~~~~~~~~~~~gl 72 (456)
T PLN02210 8 ETHVLMVTL------AFQGHINPMLKLAKHLSLSSKNLHFTLATTEQAR--DL-LSTVEK------PRRPVDLVFFSDGL 72 (456)
T ss_pred CCEEEEeCC------cccccHHHHHHHHHHHHhhcCCcEEEEEeccchh--hh-hccccC------CCCceEEEECCCCC
Confidence 467888863 336778889999999 56999999999987543 11 111000 00111111 0 11
Q ss_pred CCcc-----ccc-----cchHHHHHHhcCCCCcEEEeCcc---chhHHhhhccCcEEEEeccchhhhhhhhhhh------
Q 039338 158 ADKW-----RYS-----KGWEQFDEENQREPFDVVHSESV---ALPHWLARNVTNLAVSWHGIALESLQSGIFQ------ 218 (493)
Q Consensus 158 ~~~~-----~~~-----~~~~~~~~~~~~~~~DiI~~~~~---~~~~~~~~~~p~~v~~~h~~~~~~~~~~~~~------ 218 (493)
+... .+. .....+.+.+.+.+||.|+.... ........++|.+++.............+..
T Consensus 73 p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~ 152 (456)
T PLN02210 73 PKDDPRAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP 152 (456)
T ss_pred CCCcccCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC
Confidence 1100 011 11123455555667998877532 2333344567854443333322111111100
Q ss_pred hh------hcCCCCc--cchHhHhHHH----HHHHHHHHHH-HhhccCCeEEEcChhHHH-HHHHHhCCCCCcEEEecCC
Q 039338 219 DL------TRKPLEP--MSLAFNKSLQ----GVMLKVLNEI-RFFNKYAHHVAISDSCGE-MLRDVYQIPSERVHVILNG 284 (493)
Q Consensus 219 ~~------~~~~~~~--~~~~~~~~~~----~~~~~~~~~~-~~~~~~d~ii~~S~~~~~-~~~~~~~~~~~~v~vi~ng 284 (493)
.. ...|..+ ........+. ..+.....+. .....++.|++.|-...+ ...+.+. ...++..|.+-
T Consensus 153 ~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~-~~~~v~~VGPl 231 (456)
T PLN02210 153 DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA-DLKPVIPIGPL 231 (456)
T ss_pred cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh-hcCCEEEEccc
Confidence 00 0011111 0001100000 0011111111 234578889988866554 2222221 11245555544
Q ss_pred ccCCC--ccCCc----------ccchhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEE-EeCC
Q 039338 285 INENE--YGVDL----------SLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIV-AGSG 351 (493)
Q Consensus 285 vd~~~--~~~~~----------~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-~G~g 351 (493)
+.... ..... .......+-+.-.++++.+++.+|+.... ..+.+-+.+.-+... +.++++ ++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~-~~~~~~e~a~~l~~~--~~~flw~~~~~ 308 (456)
T PLN02210 232 VSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLES-LENQVETIAKALKNR--GVPFLWVIRPK 308 (456)
T ss_pred CchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccC-CHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 32100 00000 01112223333333445777788987532 334444444444443 234333 4422
Q ss_pred C---cHHHHhhh--cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceee
Q 039338 352 P---WEQRYKDF--GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVV 423 (493)
Q Consensus 352 ~---~~~~~~~l--~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~ 423 (493)
. ....+.+. .++..+.+++|+.+ +++.+++..+-+ + .|+ ++++||+++|+|+|+-...+-.. ..+.
T Consensus 309 ~~~~~~~~~~~~~~~~~g~v~~w~PQ~~---iL~h~~vg~Fit-H-~G~-nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~ 382 (456)
T PLN02210 309 EKAQNVQVLQEMVKEGQGVVLEWSPQEK---ILSHMAISCFVT-H-CGW-NSTIETVVAGVPVVAYPSWTDQPIDARLLV 382 (456)
T ss_pred ccccchhhHHhhccCCCeEEEecCCHHH---HhcCcCcCeEEe-e-CCc-ccHHHHHHcCCCEEecccccccHHHHHHHH
Confidence 1 11222222 24556779998875 566676433334 2 344 49999999999999986533110 1333
Q ss_pred e-CcceEEEC------C-CHHHHHHHHHHHHHc
Q 039338 424 D-DEFGFMFA------P-NVESLHKTLEAAVSE 448 (493)
Q Consensus 424 ~-~~~G~~~~------~-d~~~l~~~i~~ll~~ 448 (493)
+ -+.|+.+. . +.+++.+++++++.+
T Consensus 383 ~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 383 DVFGIGVRMRNDAVDGELKVEEVERCIEAVTEG 415 (456)
T ss_pred HHhCeEEEEeccccCCcCCHHHHHHHHHHHhcC
Confidence 3 46777663 3 789999999999976
No 146
>PLN02670 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.0045 Score=62.01 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=121.5
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhCCC-CCcEEEecCCccC-CCccCCcc-c---chhhhhhhCCCCCCcEEEEEeccc
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQIP-SERVHVILNGINE-NEYGVDLS-L---GQSFRSRIGIPKNASLVLGVAGRL 320 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~~~-~~~v~vi~ngvd~-~~~~~~~~-~---~~~~r~~~~i~~~~~~~i~~~Gr~ 320 (493)
....+++.|++.|-...+ ...+.+.-. ..++.-|.+-+.. ..-..... . ...+.+-+.-.+.+.++.+.+|+.
T Consensus 209 ~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~ 288 (472)
T PLN02670 209 FAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTE 288 (472)
T ss_pred hhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEeccc
Confidence 345678999998865544 222222100 1245555433211 00000000 0 023444444443344777888987
Q ss_pred cc--ccChHHHHHHHHHHHhhCCCeEEEEEeCCCc--HH--------HHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 321 VK--DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW--EQ--------RYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 321 ~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~--------~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
.. ...+..+..++... ...+ ++++..... .+ ..++. +..+.+.+++|+.++ ++...+..+
T Consensus 289 ~~l~~~q~~ela~gl~~s---~~~F-lWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~I---L~H~~v~~F 361 (472)
T PLN02670 289 ASLRREEVTELALGLEKS---ETPF-FWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKI---LSHESVGGF 361 (472)
T ss_pred ccCCHHHHHHHHHHHHHC---CCCE-EEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHH---hcCccccee
Confidence 53 33344444554444 2222 333332110 11 11111 134778899998864 555555333
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEecCCCCCc---cceeeeCcceEEEC------C-CHHHHHHHHHHHHHcCcH--HHHH
Q 039338 388 PTLRPQGLDLTLMEAMMSGKPVMASRFPSIK---GTIVVDDEFGFMFA------P-NVESLHKTLEAAVSEGPM--RLAQ 455 (493)
Q Consensus 388 ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~---~e~v~~~~~G~~~~------~-d~~~l~~~i~~ll~~~~~--~~~~ 455 (493)
-+ + .| -++++||+++|+|+|+....+-. ...++.-+.|+.+. . +.+++.+++.+++.+ ++ .+++
T Consensus 362 vt-H-cG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~-~~g~~~r~ 437 (472)
T PLN02670 362 LT-H-CG-WNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVD-DAGEEIRD 437 (472)
T ss_pred ee-c-CC-cchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHHHHhcC-cchHHHHH
Confidence 34 2 33 46999999999999998643311 02334456777764 2 689999999999977 42 3333
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Q 039338 456 RGEACRQYAASMFTANKMALAYERLFLCIK 485 (493)
Q Consensus 456 ~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~ 485 (493)
..++.++.+.+.=..++.++.+++.+.+..
T Consensus 438 ~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 438 KAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 344444445555577788888888777655
No 147
>PLN02764 glycosyltransferase family protein
Probab=98.28 E-value=0.0059 Score=60.75 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=120.9
Q ss_pred hhccCCeEEEcChhHHH-HHHHHhCCC-CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccCh
Q 039338 249 FFNKYAHHVAISDSCGE-MLRDVYQIP-SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGH 326 (493)
Q Consensus 249 ~~~~~d~ii~~S~~~~~-~~~~~~~~~-~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~ 326 (493)
.+..++.|++.|-+..+ .+.+.+.-. ..++..|.+-+.... .........-+-+.-.+.+..+.+.+|+... -..
T Consensus 196 ~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~--~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~-~~~ 272 (453)
T PLN02764 196 SLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPD--KTRELEERWVKWLSGYEPDSVVFCALGSQVI-LEK 272 (453)
T ss_pred hhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcc--ccccchhHHHHHHhCCCCCceEEEeeccccc-CCH
Confidence 45678899988855443 223323100 135666654321110 0011123344555555555688889998753 233
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEe-CCCc--HH-----HHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 327 PLLHEAFSKLMVKYPDVYLIVAG-SGPW--EQ-----RYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 327 ~~ll~a~~~l~~~~~~~~l~i~G-~g~~--~~-----~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
+.+.+....|...+.++..++-- .+.. .. ...+. +..+.+.+++|+.++... .+++.+| + + .| -+
T Consensus 273 ~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h-~~v~~Fv--t-H-~G-~n 346 (453)
T PLN02764 273 DQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSH-PSVGCFV--S-H-CG-FG 346 (453)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcC-cccCeEE--e-c-CC-ch
Confidence 55556666655554455444431 1110 11 11111 256778899998875444 3345566 3 2 33 46
Q ss_pred HHHHHHHcCCcEEecCCCCCcc---ceee-eCcceEEEC-----C-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHH---H
Q 039338 398 TLMEAMMSGKPVMASRFPSIKG---TIVV-DDEFGFMFA-----P-NVESLHKTLEAAVSEGPMRLAQRGEACRQY---A 464 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~~~~---e~v~-~~~~G~~~~-----~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~ 464 (493)
+++||+.+|+|+|+....+-.. ..+. .-+.|+.+. . +.+++.+++++++.+..+..+++.+++++. +
T Consensus 347 S~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~ 426 (453)
T PLN02764 347 SMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL 426 (453)
T ss_pred HHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999987533110 1232 235565542 3 789999999999987324444444444433 3
Q ss_pred HHhcCHHHHHHHHHHHHHHHh
Q 039338 465 ASMFTANKMALAYERLFLCIK 485 (493)
Q Consensus 465 ~~~fs~~~~~~~~~~~~~~i~ 485 (493)
.+-=|-.+..+++.+.+.+..
T Consensus 427 ~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 427 ASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred HhcCCHHHHHHHHHHHHHHhc
Confidence 322233444444444444443
No 148
>PLN02562 UDP-glycosyltransferase
Probab=98.20 E-value=0.0078 Score=60.28 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=77.7
Q ss_pred cEEEEEecccc---cccChHHHHHHHHHHHhhCCCeEEEEEeCC---CcH-HHHhhhcCcEEEecCCCHHHHHHHHHHcC
Q 039338 311 SLVLGVAGRLV---KDKGHPLLHEAFSKLMVKYPDVYLIVAGSG---PWE-QRYKDFGHQVLVMGSMSPAELRAFYNAID 383 (493)
Q Consensus 311 ~~~i~~~Gr~~---~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g---~~~-~~~~~l~~~V~~~g~~~~~~~~~~~~~ad 383 (493)
..+++.+|+.. +.+.+..+..++... +..+ ++++..+ ... ...+...+++.+.+++|+.++ ++..+
T Consensus 274 svvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~f-iW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~i---L~h~~ 346 (448)
T PLN02562 274 SVIYISFGSWVSPIGESNVRTLALALEAS---GRPF-IWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEV---LKHQA 346 (448)
T ss_pred ceEEEEecccccCCCHHHHHHHHHHHHHC---CCCE-EEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHH---hCCCc
Confidence 36777888864 233444555555544 2222 3334321 111 122334578899999988865 44555
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeee-CcceEEECC-CHHHHHHHHHHHHHc
Q 039338 384 IFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVD-DEFGFMFAP-NVESLHKTLEAAVSE 448 (493)
Q Consensus 384 v~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~-~~~G~~~~~-d~~~l~~~i~~ll~~ 448 (493)
+.++-+ + .| -++++||+.+|+|+|+....+-.. ..+.+ -+.|+-+.. +.+++.+++++++.+
T Consensus 347 v~~fvt-H-~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 347 VGCYLT-H-CG-WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVMED 413 (448)
T ss_pred cceEEe-c-Cc-chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCC
Confidence 533334 2 34 459999999999999986433110 22333 356777766 889999999999976
No 149
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=98.17 E-value=0.011 Score=59.55 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=76.4
Q ss_pred hhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCc--------HHHH-hhh-cCcEEEecC
Q 039338 300 FRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW--------EQRY-KDF-GHQVLVMGS 369 (493)
Q Consensus 300 ~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--------~~~~-~~l-~~~V~~~g~ 369 (493)
..+.+.-.+.++.+.+.+|++.... .+.+.+.+.-|...+..+ +++++.... .+.+ +.. +.++.+.++
T Consensus 273 ~~~WLd~~~~~svVyvsfGS~~~~~-~~~~~ela~gL~~~~~~f-lw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w 350 (477)
T PLN02863 273 VMTWLDTCEDHKVVYVCFGSQVVLT-KEQMEALASGLEKSGVHF-IWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGW 350 (477)
T ss_pred HHHHHhcCCCCceEEEEeeceecCC-HHHHHHHHHHHHhCCCcE-EEEECCCcccccchhhCCHHHHHHhccCCEEecCC
Confidence 3344444444457777888875321 133333333443332222 334442111 0111 111 256888899
Q ss_pred CCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceee-eCcceEEEC-----C-CHHHHH
Q 039338 370 MSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVV-DDEFGFMFA-----P-NVESLH 439 (493)
Q Consensus 370 ~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~-~~~~G~~~~-----~-d~~~l~ 439 (493)
+|+.++... .+.++||. + .| -++++||+++|+|+|+-...+-.. ..+. .-+.|+.+. . +.+++.
T Consensus 351 ~PQ~~vL~h-~~v~~fvt---H-~G-~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~ 424 (477)
T PLN02863 351 APQVAILSH-RAVGAFLT---H-CG-WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELA 424 (477)
T ss_pred CCHHHHhcC-CCcCeEEe---c-CC-chHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHH
Confidence 987654332 23556663 2 34 459999999999999986433110 1222 235666662 2 678999
Q ss_pred HHHHHHHHc
Q 039338 440 KTLEAAVSE 448 (493)
Q Consensus 440 ~~i~~ll~~ 448 (493)
+++.+++.+
T Consensus 425 ~~v~~~m~~ 433 (477)
T PLN02863 425 RVFMESVSE 433 (477)
T ss_pred HHHHHHhhc
Confidence 999998843
No 150
>PLN02554 UDP-glycosyltransferase family protein
Probab=98.11 E-value=0.0076 Score=61.05 Aligned_cols=190 Identities=14% Similarity=0.048 Sum_probs=100.6
Q ss_pred HhhccCCeEEEcChhHHHH-HHHHhC-C--CCCcEEEecCCccCCCccCC--cccchhhhhhhCCCCCCcEEEEEecccc
Q 039338 248 RFFNKYAHHVAISDSCGEM-LRDVYQ-I--PSERVHVILNGINENEYGVD--LSLGQSFRSRIGIPKNASLVLGVAGRLV 321 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~-~~~~~~-~--~~~~v~vi~ngvd~~~~~~~--~~~~~~~r~~~~i~~~~~~~i~~~Gr~~ 321 (493)
..+..++.+++.|-...+. ....+. . ...++..|..-+........ .....++.+-+.-.+.+..+++.+|++.
T Consensus 206 ~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~ 285 (481)
T PLN02554 206 RRFREMKGILVNTVAELEPQALKFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMG 285 (481)
T ss_pred HhcccCCEEEEechHHHhHHHHHHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccc
Confidence 4467899999988654442 222221 0 11355555443211110000 1111234444433333346777888874
Q ss_pred c--ccChHHHHHHHHHHHhhCCCeEEEE-EeCC----------C--------cHHHHhhhcCcEEEecCCCHHHHHHHHH
Q 039338 322 K--DKGHPLLHEAFSKLMVKYPDVYLIV-AGSG----------P--------WEQRYKDFGHQVLVMGSMSPAELRAFYN 380 (493)
Q Consensus 322 ~--~Kg~~~ll~a~~~l~~~~~~~~l~i-~G~g----------~--------~~~~~~~l~~~V~~~g~~~~~~~~~~~~ 380 (493)
. .+.+..++.++... + .++++ ++.. . .....++..+++.+.+++|+.++... .
T Consensus 286 ~~~~~~~~~la~~l~~~---~--~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H-~ 359 (481)
T PLN02554 286 GFSEEQAREIAIALERS---G--HRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAK-P 359 (481)
T ss_pred cCCHHHHHHHHHHHHHc---C--CCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCC-c
Confidence 3 33455555555544 2 23333 3210 0 01122224467888899998765432 4
Q ss_pred HcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCc----cceeeeCcceEEEC-------------C-CHHHHHHHH
Q 039338 381 AIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIK----GTIVVDDEFGFMFA-------------P-NVESLHKTL 442 (493)
Q Consensus 381 ~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~----~e~v~~~~~G~~~~-------------~-d~~~l~~~i 442 (493)
+++.|| + + .| -++++||+.+|+|+|+....+-. ..+++.-+.|..++ . +.+++.++|
T Consensus 360 ~v~~Fv--t-H-~G-~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av 434 (481)
T PLN02554 360 AIGGFV--T-H-CG-WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGI 434 (481)
T ss_pred ccCccc--c-c-Cc-cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHH
Confidence 455566 3 2 34 45999999999999998643311 01233335566552 3 789999999
Q ss_pred HHHHHc
Q 039338 443 EAAVSE 448 (493)
Q Consensus 443 ~~ll~~ 448 (493)
.+++.+
T Consensus 435 ~~vm~~ 440 (481)
T PLN02554 435 RCLMEQ 440 (481)
T ss_pred HHHhcC
Confidence 999963
No 151
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.92 E-value=0.031 Score=55.82 Aligned_cols=202 Identities=14% Similarity=0.038 Sum_probs=105.3
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhCCCCCcEEEecCCccCC----CccCCc---------ccchhhhhhhCCCCCCcEE
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQIPSERVHVILNGINEN----EYGVDL---------SLGQSFRSRIGIPKNASLV 313 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~~~~~~v~vi~ngvd~~----~~~~~~---------~~~~~~r~~~~i~~~~~~~ 313 (493)
..+.++|.|++.|-...+ ...+.+.- ..++..|.+-+... ...... ...+...+-+.-.+.+..+
T Consensus 189 ~~~~~~~~vlvNTf~eLE~~~~~~~~~-~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svv 267 (449)
T PLN02173 189 TNFDKADFVLVNSFHDLDLHENELLSK-VCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVV 267 (449)
T ss_pred hhhccCCEEEEeCHHHhhHHHHHHHHh-cCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceE
Confidence 446789999999865544 22222211 12455454432110 000000 0111223333333444477
Q ss_pred EEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC---c-HHHHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 314 LGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP---W-EQRYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~---~-~~~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
.+.+|+... -..+.+.+.+.-| .. .++ ++++-.+. . ....++. ++++.+.+++|+.+ +++..++..+-
T Consensus 268 yvsfGS~~~-~~~~~~~ela~gL-s~-~~f-lWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~---iL~H~~v~~Fv 340 (449)
T PLN02173 268 YIAFGSMAK-LSSEQMEEIASAI-SN-FSY-LWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQ---VLSNKAIGCFM 340 (449)
T ss_pred EEEeccccc-CCHHHHHHHHHHh-cC-CCE-EEEEeccchhcccchHHHhhcCCceEEeCCCCHHH---HhCCCccceEE
Confidence 888898753 2334444444444 22 233 33332111 1 1223333 47889999999775 56666654443
Q ss_pred CCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeeeC-cceEEEC------C-CHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 389 TLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVDD-EFGFMFA------P-NVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 389 s~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~-~~G~~~~------~-d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
+ + .| .++++||+++|+|+|+...-+-.. ..+++. +.|+-+. . +.+++.+++.+++.+ .+ .+++.
T Consensus 341 t-H-cG-wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~-~~-~~~~r 415 (449)
T PLN02173 341 T-H-CG-WNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG-EK-SKEMK 415 (449)
T ss_pred e-c-Cc-cchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC-Ch-HHHHH
Confidence 4 2 33 469999999999999986432110 233332 4555552 1 679999999999976 32 23444
Q ss_pred HHHHH
Q 039338 458 EACRQ 462 (493)
Q Consensus 458 ~~~~~ 462 (493)
+++++
T Consensus 416 ~~a~~ 420 (449)
T PLN02173 416 ENAGK 420 (449)
T ss_pred HHHHH
Confidence 44443
No 152
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.83 E-value=0.0014 Score=63.22 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=75.2
Q ss_pred hhhhhhhCCCCCCcEEEEEecc-cccccCh--HHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc----Cc-EEEecC
Q 039338 298 QSFRSRIGIPKNASLVLGVAGR-LVKDKGH--PLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG----HQ-VLVMGS 369 (493)
Q Consensus 298 ~~~r~~~~i~~~~~~~i~~~Gr-~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~----~~-V~~~g~ 369 (493)
..+..+++++.+++++++..|. ..+.|.+ +...+.++.+.+. +.++++.|...+++..+++. .+ +.+.|.
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~ 239 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGE 239 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCC
Confidence 3445666766566677777776 3466664 4777877777653 57889999876665555443 33 346788
Q ss_pred CCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 370 MSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 370 ~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
.+-.++..+++.||++|-. ++- .+==|.|.|+|+|+--
T Consensus 240 ~sL~el~ali~~a~l~I~~----DSG--p~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 240 TSLDEAVDLIALAKAVVTN----DSG--LMHVAAALNRPLVALY 277 (334)
T ss_pred CCHHHHHHHHHhCCEEEee----CCH--HHHHHHHcCCCEEEEE
Confidence 8889999999999999953 232 4444889999999863
No 153
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.82 E-value=6.3e-07 Score=77.15 Aligned_cols=109 Identities=21% Similarity=0.357 Sum_probs=68.2
Q ss_pred eEE-EEEeCCCcHHHHhhh---cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCc
Q 039338 343 VYL-IVAGSGPWEQRYKDF---GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIK 418 (493)
Q Consensus 343 ~~l-~i~G~g~~~~~~~~l---~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~ 418 (493)
+++ +++|.....+...+. ..+|.+.++. +++.++|+.||++|. + +-+.|+.|++++|+|.|.-...+..
T Consensus 32 ~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~--~~m~~~m~~aDlvIs---~--aG~~Ti~E~l~~g~P~I~ip~~~~~ 104 (167)
T PF04101_consen 32 IQVIVQTGKNNYEELKIKVENFNPNVKVFGFV--DNMAELMAAADLVIS---H--AGAGTIAEALALGKPAIVIPLPGAA 104 (167)
T ss_dssp CCCCCCCTTCECHHHCCCHCCTTCCCEEECSS--SSHHHHHHHHSEEEE---C--S-CHHHHHHHHCT--EEEE--TTT-
T ss_pred cEEEEEECCCcHHHHHHHHhccCCcEEEEech--hhHHHHHHHcCEEEe---C--CCccHHHHHHHcCCCeeccCCCCcc
Confidence 344 445655333322222 2689999998 479999999999995 2 3356999999999999887666521
Q ss_pred c-------ceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHHHHHHHHH
Q 039338 419 G-------TIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMRLAQRGEA 459 (493)
Q Consensus 419 ~-------e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~~~~~~~~ 459 (493)
+ ..+.+.+.|..+.. +++.|.++|.+++.+ +.....+.++
T Consensus 105 ~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~-~~~~~~~~~~ 154 (167)
T PF04101_consen 105 DNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSD-PEKLKEMAKA 154 (167)
T ss_dssp T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCC-HH-SHHHCCC
T ss_pred hHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcC-cHHHHHHHHH
Confidence 0 12333444554443 578899999999888 6655555444
No 154
>PLN00164 glucosyltransferase; Provisional
Probab=97.78 E-value=0.056 Score=54.70 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=59.8
Q ss_pred CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---cee-eeCcceEEEC-----
Q 039338 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIV-VDDEFGFMFA----- 432 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v-~~~~~G~~~~----- 432 (493)
..+.+.+++|+.+ +++..++..+-+ + .|+ ++++||+++|+|+|+-..-+-.. ..+ ..-+.|+.+.
T Consensus 339 ~g~~v~~w~PQ~~---iL~h~~vg~fvt-H-~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~ 412 (480)
T PLN00164 339 RGLVWPTWAPQKE---ILAHAAVGGFVT-H-CGW-NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKR 412 (480)
T ss_pred CCeEEeecCCHHH---HhcCcccCeEEe-e-ccc-chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccccc
Confidence 4577779998775 456666533334 2 343 59999999999999986432110 122 2335676653
Q ss_pred --C-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 039338 433 --P-NVESLHKTLEAAVSEGPMRLAQRGEACRQY 463 (493)
Q Consensus 433 --~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 463 (493)
. +.+++.++|.+++.+..++.+++++++++.
T Consensus 413 ~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~ 446 (480)
T PLN00164 413 DNFVEAAELERAVRSLMGGGEEEGRKAREKAAEM 446 (480)
T ss_pred CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 2 679999999999976221234444444443
No 155
>PLN02207 UDP-glycosyltransferase
Probab=97.70 E-value=0.0087 Score=59.95 Aligned_cols=189 Identities=12% Similarity=0.070 Sum_probs=102.5
Q ss_pred HhhccCCeEEEcChhHHHH-HHHHhCC-C-CCcEEEecCCccCCCccCCc----ccchhhhhhhCCCCCCcEEEEEeccc
Q 039338 248 RFFNKYAHHVAISDSCGEM-LRDVYQI-P-SERVHVILNGINENEYGVDL----SLGQSFRSRIGIPKNASLVLGVAGRL 320 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~-~~~~~~~-~-~~~v~vi~ngvd~~~~~~~~----~~~~~~r~~~~i~~~~~~~i~~~Gr~ 320 (493)
..+.+++.+++.|....+. ..+.+.- + ..++..|..-..... ...+ ...+.+.+-+.-.+.+..+.+.+|+.
T Consensus 207 ~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~-~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~ 285 (468)
T PLN02207 207 ILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKA-QPHPEQDLARRDELMKWLDDQPEASVVFLCFGSM 285 (468)
T ss_pred HhcccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCccccc-CCCCccccchhhHHHHHHhcCCCCcEEEEEeccC
Confidence 3467899999999887764 2332310 1 134555543321110 0000 01123444444444444777788987
Q ss_pred cc--ccChHHHHHHHHHHHhhCCCeEEEEEeCCCc-------HHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCC
Q 039338 321 VK--DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW-------EQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLR 391 (493)
Q Consensus 321 ~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-------~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~ 391 (493)
.. .+....+..++.... ..+ ++.+.+... ....++..+++.+.++.|+.++... .+...|| + +
T Consensus 286 ~~~~~~q~~ela~~l~~~~---~~f-lW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H-~~vg~Fv--T-H 357 (468)
T PLN02207 286 GRLRGPLVKEIAHGLELCQ---YRF-LWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAH-KAVGGFV--S-H 357 (468)
T ss_pred cCCCHHHHHHHHHHHHHCC---CcE-EEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcc-cccceee--e-c
Confidence 52 233445555555442 222 334442111 1223334577888899998876544 3334455 3 2
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCcc---ce-eeeCcceEEE---------CC-CHHHHHHHHHHHHH
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIKG---TI-VVDDEFGFMF---------AP-NVESLHKTLEAAVS 447 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~-v~~~~~G~~~---------~~-d~~~l~~~i~~ll~ 447 (493)
.|+ ++++||+.+|+|+|+-...+-.. .. +..-+.|+-+ .. +.+++.++|.+++.
T Consensus 358 -~Gw-nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 358 -CGW-NSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred -Ccc-ccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 343 58999999999999986533110 12 2223455533 13 77899999999996
No 156
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.69 E-value=0.077 Score=53.45 Aligned_cols=188 Identities=12% Similarity=-0.028 Sum_probs=100.9
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhC----CC---CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQ----IP---SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~----~~---~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
..+.++|.+++.|-...+ ...+.+. .. ..++.-|.+-+.... .. .......+-+.-.+.+..+++.+|+
T Consensus 196 ~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~--~~-~~~~~c~~wLd~~~~~sVvyvsfGS 272 (481)
T PLN02992 196 LAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQ--SS-KTDHPVLDWLNKQPNESVLYISFGS 272 (481)
T ss_pred HhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCccCCcC--CC-cchHHHHHHHHcCCCCceEEEeecc
Confidence 346789999999865544 2222221 00 123444443222110 11 1112233334333334477788898
Q ss_pred ccc--ccChHHHHHHHHHHHhhCCCeEEEEEeC---C--------------Cc--H-----HHHhhh-cCcEEEecCCCH
Q 039338 320 LVK--DKGHPLLHEAFSKLMVKYPDVYLIVAGS---G--------------PW--E-----QRYKDF-GHQVLVMGSMSP 372 (493)
Q Consensus 320 ~~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~---g--------------~~--~-----~~~~~l-~~~V~~~g~~~~ 372 (493)
... .+....+..++.... ..+ ++++-. + .. . ...++. +.++.+.+++|+
T Consensus 273 ~~~l~~~q~~ela~gL~~s~---~~f-lW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ 348 (481)
T PLN02992 273 GGSLSAKQLTELAWGLEMSQ---QRF-VWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQ 348 (481)
T ss_pred cccCCHHHHHHHHHHHHHcC---CCE-EEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCH
Confidence 753 344555556665552 223 334411 0 00 0 111111 256889999998
Q ss_pred HHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---cee-eeCcceEEEC----C-CHHHHHHHHH
Q 039338 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIV-VDDEFGFMFA----P-NVESLHKTLE 443 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v-~~~~~G~~~~----~-d~~~l~~~i~ 443 (493)
.++ ++...+..+-+ + .| -++++||+.+|+|+|+....+-.. ..+ +.-+.|..++ . +.+++.+++.
T Consensus 349 ~~i---L~h~~vg~Fit-H-~G-~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~ 422 (481)
T PLN02992 349 AEI---LAHQAVGGFLT-H-CG-WSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVR 422 (481)
T ss_pred HHH---hCCcccCeeEe-c-Cc-hhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHH
Confidence 764 55555533323 2 33 469999999999999986533110 123 3445676663 2 7899999999
Q ss_pred HHHHc
Q 039338 444 AAVSE 448 (493)
Q Consensus 444 ~ll~~ 448 (493)
+++.+
T Consensus 423 ~vm~~ 427 (481)
T PLN02992 423 KVMVE 427 (481)
T ss_pred HHhcC
Confidence 99976
No 157
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.0063 Score=58.61 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=71.1
Q ss_pred CcEEEEEec-ccccccCh--HHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc----CcEEEecCCCHHHHHHHHHHc
Q 039338 310 ASLVLGVAG-RLVKDKGH--PLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG----HQVLVMGSMSPAELRAFYNAI 382 (493)
Q Consensus 310 ~~~~i~~~G-r~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~----~~V~~~g~~~~~~~~~~~~~a 382 (493)
++.+++..| +-...|.+ +...+.+..+.+++ .+++++|+..+.+..+++. ..+.+.|..+-.++..+++.|
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a 252 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGA 252 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcC
Confidence 457777888 66567765 47778888888775 7889999875555655554 223389999999999999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 383 DIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 383 dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
|++|-+. + | .+-=|.+.|+|+|+.-
T Consensus 253 ~l~I~~D----S-g-~~HlAaA~~~P~I~iy 277 (334)
T COG0859 253 DLVIGND----S-G-PMHLAAALGTPTIALY 277 (334)
T ss_pred CEEEccC----C-h-HHHHHHHcCCCEEEEE
Confidence 9999543 2 2 3444889999999864
No 158
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=97.65 E-value=0.014 Score=55.96 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=63.8
Q ss_pred cEEEEEecccccccCh--HHHHHHHHHHHhhCCCeEEEEE-eCCCcHHHHhhhc---CcEEEecCCCHHHHHHHHHHcCE
Q 039338 311 SLVLGVAGRLVKDKGH--PLLHEAFSKLMVKYPDVYLIVA-GSGPWEQRYKDFG---HQVLVMGSMSPAELRAFYNAIDI 384 (493)
Q Consensus 311 ~~~i~~~Gr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~-G~g~~~~~~~~l~---~~V~~~g~~~~~~~~~~~~~adv 384 (493)
+++++..|.-...|.+ +...+.+..+.++ +.++++. |...+.+..+++. .++.+.|..+-.++..+++.||+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l 256 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKA 256 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCE
Confidence 3554445543445554 4677888887654 5677775 5433444444433 45778898888999999999999
Q ss_pred EEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 385 FVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 385 ~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
+|-.- +- .+-=|.++|+|+|+-=
T Consensus 257 ~I~nD----SG--p~HlA~A~g~p~valf 279 (322)
T PRK10964 257 VVSVD----TG--LSHLTAALDRPNITLY 279 (322)
T ss_pred EEecC----Cc--HHHHHHHhCCCEEEEE
Confidence 99632 21 4555889999999864
No 159
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.65 E-value=0.01 Score=57.59 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=70.6
Q ss_pred hhhhhCCCCCCcEEEEEeccc-ccccCh--HHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc----C-----cEEEe
Q 039338 300 FRSRIGIPKNASLVLGVAGRL-VKDKGH--PLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG----H-----QVLVM 367 (493)
Q Consensus 300 ~r~~~~i~~~~~~~i~~~Gr~-~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~----~-----~V~~~ 367 (493)
+...+++..+++++++..|.- .+.|.+ +.+.+.++.+.+ .++++++.|...+++..+++. . .+.+.
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLA 247 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeecc
Confidence 344445544555666677763 355654 466777777754 367888999766655544432 1 15677
Q ss_pred cCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 368 GSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 368 g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
|..+=.++..+++.||++|-. ++- .+==|.|.|+|+|+-=
T Consensus 248 g~~sL~el~ali~~a~l~I~n----DTG--p~HlAaA~g~P~valf 287 (348)
T PRK10916 248 GETQLEQAVILIAACKAIVTN----DSG--LMHVAAALNRPLVALY 287 (348)
T ss_pred CCCCHHHHHHHHHhCCEEEec----CCh--HHHHHHHhCCCEEEEE
Confidence 888889999999999999953 232 4445889999999853
No 160
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.53 E-value=0.013 Score=56.13 Aligned_cols=129 Identities=17% Similarity=0.061 Sum_probs=78.1
Q ss_pred CCcEEEEEecccccccCh--HHHHHHHHHHHhhCCCeEEEEEeCCC-cHHHHhhhc---CcEEEecCCCHHHHHHHHHHc
Q 039338 309 NASLVLGVAGRLVKDKGH--PLLHEAFSKLMVKYPDVYLIVAGSGP-WEQRYKDFG---HQVLVMGSMSPAELRAFYNAI 382 (493)
Q Consensus 309 ~~~~~i~~~Gr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~~~~l~---~~V~~~g~~~~~~~~~~~~~a 382 (493)
+++++++..|.-.+.|.+ +.+.+.++.+.++ +.++++.|.++ +++..+++. ++..+.|..+-.++..+++.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a 255 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGA 255 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcC
Confidence 345666677765566765 5777777777653 56777775444 333333332 445678988889999999999
Q ss_pred CEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcc-eE----EECC-CHHHHHHHHHHH
Q 039338 383 DIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEF-GF----MFAP-NVESLHKTLEAA 445 (493)
Q Consensus 383 dv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~-G~----~~~~-d~~~l~~~i~~l 445 (493)
|++|-. ++. .+==|.++|+|+|+-=.+..+...---+.+ .. .... ++++..+++.++
T Consensus 256 ~l~I~~----DSg--p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 256 DAVVGV----DTG--LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEEL 318 (319)
T ss_pred CEEEeC----CCh--HHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhh
Confidence 999963 332 344477899999986322222110000111 11 1333 677777777665
No 161
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.044 Score=48.83 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred ccCCeEEEcChhHHHHHHHHhCCCCCcEEEe---cCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccCh-
Q 039338 251 NKYAHHVAISDSCGEMLRDVYQIPSERVHVI---LNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGH- 326 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi---~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~- 326 (493)
...|.|++.-....+.... ...++.-| +|.|...+... . .+..+.++ |..++++-+++|.-.+.-.+
T Consensus 108 ~~fDlvivp~HD~~~~~s~----~~~Nilpi~Gs~h~Vt~~~lAa---~-~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~ 178 (329)
T COG3660 108 NHFDLVIVPYHDWREELSD----QGPNILPINGSPHNVTSQRLAA---L-REAFKHLL-PLPRQRVAVLVGGNNKAFVFQ 178 (329)
T ss_pred ccceEEeccchhhhhhhhc----cCCceeeccCCCCcccHHHhhh---h-HHHHHhhC-CCCCceEEEEecCCCCCCccC
Confidence 3467777776666554322 22344333 22232222211 1 22333443 55566787888876554333
Q ss_pred -H---HHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh-----hc-CcEEEecCC--CHHHHHHHHHHcCEEEeCCCCCCC
Q 039338 327 -P---LLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD-----FG-HQVLVMGSM--SPAELRAFYNAIDIFVNPTLRPQG 394 (493)
Q Consensus 327 -~---~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~-----l~-~~V~~~g~~--~~~~~~~~~~~adv~v~ps~~~eg 394 (493)
+ .+..++.+..++ ....+++.-+....+..+. +. ..+.+...- ...-+.+++++||.++.+. ++
T Consensus 179 ~d~a~q~~~~l~k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~Ta---DS 254 (329)
T COG3660 179 EDKAHQFASLLVKILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTA---DS 254 (329)
T ss_pred HHHHHHHHHHHHHHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEec---ch
Confidence 2 233333333332 2455665544332222222 22 233444333 3356889999999999754 33
Q ss_pred CChHHHHHHHcCCcEEecCCCCC
Q 039338 395 LDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 395 ~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
=+-..||.+.|+||-+...++.
T Consensus 255 -inM~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 255 -INMCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred -hhhhHHHhccCCCeEEEecCCc
Confidence 2367899999999988764443
No 162
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=97.48 E-value=0.04 Score=49.47 Aligned_cols=295 Identities=15% Similarity=0.134 Sum_probs=145.3
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCCCC
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQREPF 179 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (493)
.|+.+...++-..+.+.||++.++.........+.... .....+.... ..-+....+.+. .+
T Consensus 1 CGVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~dsH~--------~~~~si~k~~--------~~e~de~v~~vN--~y 62 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNGVEFTIVSADEKSFTRPDSHD--------SKSFSIPKYL--------AKEYDETVKKVN--DY 62 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEETSS--TTTTSSS---------TTTEEEE-T--------TTHHHHHHHHHT--SS
T ss_pred CCccccHHHHHHHHHhcCCeeEEEEecccccCCccccc--------cceeeeehhh--------HHHHHHHHHHhh--cc
Confidence 37889999999999999999999988765522221111 1111111111 112334444442 89
Q ss_pred cEEEeCccchhHH----------hhhcc--C-cEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHH
Q 039338 180 DVVHSESVALPHW----------LARNV--T-NLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNE 246 (493)
Q Consensus 180 DiI~~~~~~~~~~----------~~~~~--p-~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (493)
||+.+++.+.... +..++ + ++|...|+....... |....
T Consensus 63 DI~m~nSvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~----------------------------rn~~l 114 (355)
T PF11440_consen 63 DIVMFNSVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHNKLSID----------------------------RNPYL 114 (355)
T ss_dssp SEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHT----------------------------TBSSH
T ss_pred CEEEEecccCchHHHHHHHHHHHHHHhccccceeEEEeeccceeecc----------------------------ccccH
Confidence 9999987632221 11222 1 357888875433221 11111
Q ss_pred HHhhccCCeEEEcChhH--HHHHH-HHhCCC---CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEE---EEe
Q 039338 247 IRFFNKYAHHVAISDSC--GEMLR-DVYQIP---SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVL---GVA 317 (493)
Q Consensus 247 ~~~~~~~d~ii~~S~~~--~~~~~-~~~~~~---~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i---~~~ 317 (493)
...++.+|.|++.|... .+.+. ..++-. .+++.-.|-..+ |++ +.+-...|+.+..+... +.. .|+
T Consensus 115 e~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~n---fqp-p~~i~~~Rstywkd~se-~nmnv~~yi 189 (355)
T PF11440_consen 115 EGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVFN---FQP-PMDINKYRSTYWKDVSE-KNMNVNRYI 189 (355)
T ss_dssp HHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------EEE--------B-HHHHHHHH---GGG-SEEEEEEEE
T ss_pred HHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhcceeee---cCC-cccHHHHHHHHhhhhHh-hhcccceee
Confidence 24567899999988642 22232 333211 123333333222 111 11223556666533333 333 699
Q ss_pred cccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHH--Hhh-----------------hc--CcEEEecCCCHHHHH
Q 039338 318 GRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQR--YKD-----------------FG--HQVLVMGSMSPAELR 376 (493)
Q Consensus 318 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~--~~~-----------------l~--~~V~~~g~~~~~~~~ 376 (493)
||..-.||...+++.-....+. ++.+-++-|-...... +.+ ++ .-+-++|..-.+|..
T Consensus 190 gR~Tt~kG~~~mfD~h~~~lK~-~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~ 268 (355)
T PF11440_consen 190 GRQTTWKGPRRMFDLHEKILKP-AGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGL 268 (355)
T ss_dssp --SSGGG-HHHHHHHHHHTTTT-TT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHH
T ss_pred eeeeeecCcHHHhhhHHHhcCC-cchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHHHH
Confidence 9999999999999988886665 7888888884322111 111 11 337788887789999
Q ss_pred HHHHHcCEEEeCCC-----CCCCCChHHHHHHHcCC-cEEecC--------CCCCccceeeeCcceEEECC-CHHHHHHH
Q 039338 377 AFYNAIDIFVNPTL-----RPQGLDLTLMEAMMSGK-PVMASR--------FPSIKGTIVVDDEFGFMFAP-NVESLHKT 441 (493)
Q Consensus 377 ~~~~~adv~v~ps~-----~~eg~~~~~~EAm~~G~-PvI~s~--------~~~~~~e~v~~~~~G~~~~~-d~~~l~~~ 441 (493)
+.++.+-+...-+. -.+..-.+-+|..|||+ ||.-.. ..|.+ ++......+.++. |.++-.+.
T Consensus 269 ~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~--~~~~~~~~I~~De~dle~T~ek 346 (355)
T PF11440_consen 269 ERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTR--YIDHPYSAIYFDENDLESTVEK 346 (355)
T ss_dssp HHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSB--GGSS--S-EEE-TTSHHHHHHH
T ss_pred HHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCce--eeccCcceeEeccchHHHHHHH
Confidence 99999988876432 12457789999999999 444432 23322 2333344555555 78888888
Q ss_pred HHHHHHc
Q 039338 442 LEAAVSE 448 (493)
Q Consensus 442 i~~ll~~ 448 (493)
|.++.++
T Consensus 347 l~E~a~~ 353 (355)
T PF11440_consen 347 LIEVANN 353 (355)
T ss_dssp HHHHHT-
T ss_pred HHHHhcc
Confidence 8777654
No 163
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.48 E-value=0.0017 Score=66.57 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 309 NASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 309 ~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
++..+++.+|++.. ...+..++++....++.|. +++..-++. ....+.+|+.+..++|+.++ ++...+-++-
T Consensus 275 ~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~---~~~~l~~n~~~~~W~PQ~~l---L~hp~v~~fi 346 (500)
T PF00201_consen 275 KKGVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGE---PPENLPKNVLIVKWLPQNDL---LAHPRVKLFI 346 (500)
T ss_dssp TTEEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCS---HGCHHHTTEEEESS--HHHH---HTSTTEEEEE
T ss_pred CCCEEEEecCcccc-hhHHHHHHHHHHHHhhCCC-ccccccccc---ccccccceEEEeccccchhh---hhcccceeee
Confidence 44578889998753 2233333333333333355 566554442 22345589999999998754 5554443333
Q ss_pred CCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeeeCcceEEECC---CHHHHHHHHHHHHHcCcHH
Q 039338 389 TLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVDDEFGFMFAP---NVESLHKTLEAAVSEGPMR 452 (493)
Q Consensus 389 s~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~~~G~~~~~---d~~~l~~~i~~ll~~~~~~ 452 (493)
+ + |--+++.||+.+|+|+|+.+.-+-.- ..+++.+.|..++. +.+++.++|.++++| +..
T Consensus 347 t-H--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~-~~y 412 (500)
T PF00201_consen 347 T-H--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLEN-PSY 412 (500)
T ss_dssp E-S----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHS-HHH
T ss_pred e-c--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhh-hHH
Confidence 4 2 33569999999999999987543110 24556677888874 789999999999998 543
No 164
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.36 E-value=0.019 Score=53.93 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=65.7
Q ss_pred EEEEEecccccccC--hHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc------CcEEEecCCCHHHHHHHHHHcC
Q 039338 312 LVLGVAGRLVKDKG--HPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG------HQVLVMGSMSPAELRAFYNAID 383 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg--~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~------~~V~~~g~~~~~~~~~~~~~ad 383 (493)
.+++..|.-.+.|. .+...++++.+.++ +++++++|...+.+..+++. ..+.+.|..+-.|+..+++.||
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 44445555444444 46778888888765 68889999766555444432 3355678878899999999999
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEecCCC
Q 039338 384 IFVNPTLRPQGLDLTLMEAMMSGKPVMASRFP 415 (493)
Q Consensus 384 v~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~ 415 (493)
++|-+ ++ | .+--|.++|+|+|+--.+
T Consensus 201 l~I~~----Ds-g-~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 201 LVVTN----DS-G-PMHLAAALGTPTVALFGP 226 (279)
T ss_pred EEEee----CC-H-HHHHHHHcCCCEEEEECC
Confidence 99964 23 2 444467999999986433
No 165
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.31 E-value=0.049 Score=53.00 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=64.9
Q ss_pred cEEEEEecccccccCh--HHHHHHHHHHHhhCCCeEEEEEeCCCc--HHHHhhhc------CcEEEecCCCHHHHHHHHH
Q 039338 311 SLVLGVAGRLVKDKGH--PLLHEAFSKLMVKYPDVYLIVAGSGPW--EQRYKDFG------HQVLVMGSMSPAELRAFYN 380 (493)
Q Consensus 311 ~~~i~~~Gr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~l~------~~V~~~g~~~~~~~~~~~~ 380 (493)
+++++..|.-.+.|.+ +.+.+.++.+.+. +.+++++|...+ .+..+++. ..+.+.|..+-.++..+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 4677787776666764 4677777777653 568888875432 22223322 2356789888899999999
Q ss_pred HcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 381 AIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 381 ~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
.||++|-. ++- .+-=|.|+|+|+|+-=
T Consensus 262 ~a~l~v~n----DSG--p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGV----DSA--PAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEec----CCH--HHHHHHHcCCCEEEEE
Confidence 99999953 332 4444789999999864
No 166
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.28 E-value=0.0025 Score=53.96 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=58.1
Q ss_pred CCCCcEEEeCccchhHH-hhhccCc-EEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccC
Q 039338 176 REPFDVVHSESVALPHW-LARNVTN-LAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKY 253 (493)
Q Consensus 176 ~~~~DiI~~~~~~~~~~-~~~~~p~-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
...||||+.|+.+-..+ +..-.|. .++.+.++++.....+... .|..+... .....-.+.. ......+..+
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y~~~g~d~~F----Dpe~p~~~--~~~~~~r~rN-~~~l~~l~~~ 136 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYYRASGADVGF----DPEFPPSL--DDRARLRMRN-AHNLLALEQA 136 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEecCCCCcCCC----CCCCCCCH--HHHHHHHHHh-HHHHHHHHhC
Confidence 66799999997643333 3333342 2344444433222222111 11211111 1111111111 1112446789
Q ss_pred CeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCc
Q 039338 254 AHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEY 290 (493)
Q Consensus 254 d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~ 290 (493)
|..+++|.+.++.+-..+ .+|+.||+-|||++.+
T Consensus 137 D~~isPT~wQ~~~fP~~~---r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 137 DAGISPTRWQRSQFPAEF---RSKISVIHDGIDTDRF 170 (171)
T ss_pred CcCcCCCHHHHHhCCHHH---HcCcEEeecccchhhc
Confidence 999999999999887765 4799999999998754
No 167
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.28 E-value=0.043 Score=51.89 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=88.4
Q ss_pred hccCCeEEEcChhHHHHHHHHhCC-CCCcEEEe---cCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccccccc-
Q 039338 250 FNKYAHHVAISDSCGEMLRDVYQI-PSERVHVI---LNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDK- 324 (493)
Q Consensus 250 ~~~~d~ii~~S~~~~~~~~~~~~~-~~~~v~vi---~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~K- 324 (493)
....|.+|+..+. +. ...++... +|.++.+.... ....+..+++-.+ .+.+.+.+|.-....
T Consensus 95 ~~~FDlvi~p~HD---------~~~~~~Nvl~t~ga~~~i~~~~l~~---a~~~~~~~~~~l~-~p~~avLIGG~s~~~~ 161 (311)
T PF06258_consen 95 PRPFDLVIVPEHD---------RLPRGPNVLPTLGAPNRITPERLAE---AAAAWAPRLAALP-RPRVAVLIGGDSKHYR 161 (311)
T ss_pred ccccCEEEECccc---------CcCCCCceEecccCCCcCCHHHHHH---HHHhhhhhhccCC-CCeEEEEECcCCCCcc
Confidence 3467888988766 22 23344333 34443332211 1223333344222 335555777544322
Q ss_pred -ChH---HHHHHHHHHHhhCCCeEEEEEeCCCc----HHHHhhhc---CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 325 -GHP---LLHEAFSKLMVKYPDVYLIVAGSGPW----EQRYKDFG---HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 325 -g~~---~ll~a~~~l~~~~~~~~l~i~G~g~~----~~~~~~l~---~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
+.+ .+++.+..+.+..+ ..+.|..+..- .+.++++. ..+.+...-+..-+..+|+.||.++++. +
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~---D 237 (311)
T PF06258_consen 162 WDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTE---D 237 (311)
T ss_pred cCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcC---c
Confidence 223 56677777776654 78888876432 22333332 6675556666566999999999999854 3
Q ss_pred CCChHHHHHHHcCCcEEecCCCC
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPS 416 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~ 416 (493)
+ -.-+.||++.|+||.+...++
T Consensus 238 S-vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 238 S-VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred c-HHHHHHHHHcCCCEEEecCCC
Confidence 4 346899999999999988766
No 168
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=97.25 E-value=0.21 Score=48.02 Aligned_cols=190 Identities=15% Similarity=0.107 Sum_probs=94.9
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccc--cC
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKD--KG 325 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~--Kg 325 (493)
..++.+..+.+-.+...+.++. .|++.. ... |+.+.-+......... .+....+...+ ..-.+.+. +.
T Consensus 148 ~~~~~~s~i~vRD~~S~~llk~-~gi~a~---l~~---D~Af~L~~~~~~~~~~--~~~~~~~~~~i-~lr~~~~~~t~~ 217 (385)
T COG2327 148 YVLGGCSAISVRDPVSYELLKQ-LGINAR---LVT---DPAFLLPASSQNATAS--DVEAREKTVAI-TLRGLHPDNTAQ 217 (385)
T ss_pred HHhcCCcEEEEecHHhHHHHHH-cCCCeE---eec---Ccceeccccccccccc--ccccccceEEE-EecccCCchhhh
Confidence 4467888888888888888885 676432 222 4433221111100000 11122232334 33333332 22
Q ss_pred h---HHHHHHHHHHHhh-CCCeEE--EEEeCCCcHHHHhh----hc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCC
Q 039338 326 H---PLLHEAFSKLMVK-YPDVYL--IVAGSGPWEQRYKD----FG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQ 393 (493)
Q Consensus 326 ~---~~ll~a~~~l~~~-~~~~~l--~i~G~g~~~~~~~~----l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~e 393 (493)
. ..+-+++..+..+ ...+++ +-.+........+. .. .++.+..-...+++-..++++|++|-.-++
T Consensus 218 ~~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-- 295 (385)
T COG2327 218 RSILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-- 295 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH--
Confidence 2 1223444433111 123333 33333222222222 22 566555443346777799999999964433
Q ss_pred CCChHHHHHHHcCCcEEecCCCCCccceeee-CcceEEEC--C-CHHHHHHHHHHHHHcCcHHH
Q 039338 394 GLDLTLMEAMMSGKPVMASRFPSIKGTIVVD-DEFGFMFA--P-NVESLHKTLEAAVSEGPMRL 453 (493)
Q Consensus 394 g~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~-~~~G~~~~--~-d~~~l~~~i~~ll~~~~~~~ 453 (493)
.++=|++.|+|+|+-....-...+.++ +-.++..+ + +.+.+..+..+.+.+.++.+
T Consensus 296 ----saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~ 355 (385)
T COG2327 296 ----SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDELR 355 (385)
T ss_pred ----HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHHHH
Confidence 666699999999997543211111111 22233333 4 88899998888888744433
No 169
>PLN03004 UDP-glycosyltransferase
Probab=97.21 E-value=0.046 Score=54.63 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=103.6
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhC--CCCCcEEEecCCccCCCccCC-cccchhhhhhhCCCCCCcEEEEEeccccc-
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQ--IPSERVHVILNGINENEYGVD-LSLGQSFRSRIGIPKNASLVLGVAGRLVK- 322 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~--~~~~~v~vi~ngvd~~~~~~~-~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~- 322 (493)
..+.+++.|++.|-+..+ .+.+.+. ....++.-|.+-+........ ........+-+.-.+.+..+++.+|+...
T Consensus 204 ~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~ 283 (451)
T PLN03004 204 KQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLF 283 (451)
T ss_pred HhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccC
Confidence 446678899988865544 2222221 011345555443311100000 00111233334333344478888898742
Q ss_pred -ccChHHHHHHHHHHHhhCCCeEEEEEeCCCc--------H-----HHHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 323 -DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPW--------E-----QRYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 323 -~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--------~-----~~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
.+....+..++... +.--++.+..... . ...++. +.++.+.+++|+.+ +++.+++..+
T Consensus 284 ~~~q~~ela~gL~~s----~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~---iL~H~~v~~F 356 (451)
T PLN03004 284 SKEQVIEIAVGLEKS----GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP---VLNHKAVGGF 356 (451)
T ss_pred CHHHHHHHHHHHHHC----CCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH---HhCCCccceE
Confidence 33444455555443 2222334442110 1 011111 26889999999886 6777888444
Q ss_pred CCCCCCCCChHHHHHHHcCCcEEecCCCC----Cccceeee-CcceEEEC-----C-CHHHHHHHHHHHHHc
Q 039338 388 PTLRPQGLDLTLMEAMMSGKPVMASRFPS----IKGTIVVD-DEFGFMFA-----P-NVESLHKTLEAAVSE 448 (493)
Q Consensus 388 ps~~~eg~~~~~~EAm~~G~PvI~s~~~~----~~~e~v~~-~~~G~~~~-----~-d~~~l~~~i~~ll~~ 448 (493)
-+ + .| -++++||+++|+|+|+....+ .. ..+.+ -+.|+.++ . +.+++.+++++++.+
T Consensus 357 vT-H-~G-~nS~lEal~~GVP~v~~P~~~DQ~~na-~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 357 VT-H-CG-WNSILEAVCAGVPMVAWPLYAEQRFNR-VMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred ec-c-Cc-chHHHHHHHcCCCEEeccccccchhhH-HHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC
Confidence 35 2 33 469999999999999986432 11 23333 36777774 3 789999999999976
No 170
>PLN02555 limonoid glucosyltransferase
Probab=97.20 E-value=0.11 Score=52.39 Aligned_cols=204 Identities=14% Similarity=0.050 Sum_probs=105.9
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhCCCCCcEEEecCCccCCC-c-cC--C--cccchhhhhhhCCCCCCcEEEEEeccc
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQIPSERVHVILNGINENE-Y-GV--D--LSLGQSFRSRIGIPKNASLVLGVAGRL 320 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~~~~~~v~vi~ngvd~~~-~-~~--~--~~~~~~~r~~~~i~~~~~~~i~~~Gr~ 320 (493)
....+++.+++.|-...+ ...+.+.- ..++..|.+-+.... . .. . ........+-+.-.+....+.+.+|++
T Consensus 209 ~~~~~a~~vlvNTf~eLE~~~~~~l~~-~~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~ 287 (480)
T PLN02555 209 KNLDKPFCILIDTFQELEKEIIDYMSK-LCPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTV 287 (480)
T ss_pred HhcccCCEEEEEchHHHhHHHHHHHhh-CCCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccc
Confidence 346678999998865544 22222211 113555544321100 0 00 0 011122333333333333677788886
Q ss_pred ccccChHHHHHHHHHHHhhCCCeEEEEE-eCC-----C----c-HHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 321 VKDKGHPLLHEAFSKLMVKYPDVYLIVA-GSG-----P----W-EQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 321 ~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g-----~----~-~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
.. -..+.+.+.+..+... +.+++++ ... . . ....++..+++.+.+++|+.++... .+...+|.
T Consensus 288 ~~-~~~~q~~ela~~l~~~--~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H-~~v~~Fvt-- 361 (480)
T PLN02555 288 VY-LKQEQIDEIAYGVLNS--GVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAH-PSVACFVT-- 361 (480)
T ss_pred cC-CCHHHHHHHHHHHHhc--CCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCC-CccCeEEe--
Confidence 52 2233344444444332 3354443 311 0 1 1233344578888999998765433 45666663
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCc---cceeeeC-cceEEEC-------C-CHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIK---GTIVVDD-EFGFMFA-------P-NVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~---~e~v~~~-~~G~~~~-------~-d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
+ .| -++++||+.+|+|+|+...-+-. ...+.+. +.|+.+. . +.+++.+++.+++.+ ++ -++++
T Consensus 362 -H-~G-~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~-~~-g~~~r 436 (480)
T PLN02555 362 -H-CG-WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVG-EK-AAELK 436 (480)
T ss_pred -c-CC-cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcC-ch-HHHHH
Confidence 2 34 45999999999999998653311 0123333 5676661 2 679999999999975 32 23444
Q ss_pred HHHHHH
Q 039338 458 EACRQY 463 (493)
Q Consensus 458 ~~~~~~ 463 (493)
+++++.
T Consensus 437 ~ra~~l 442 (480)
T PLN02555 437 QNALKW 442 (480)
T ss_pred HHHHHH
Confidence 444443
No 171
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.03 E-value=0.016 Score=57.93 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=82.6
Q ss_pred hhhhhCCCCCCcEEEEEeccccc--ccChHHHHHHHHHHHhhCCCeEEEEEeCC---------Cc-------HHHHhhhc
Q 039338 300 FRSRIGIPKNASLVLGVAGRLVK--DKGHPLLHEAFSKLMVKYPDVYLIVAGSG---------PW-------EQRYKDFG 361 (493)
Q Consensus 300 ~r~~~~i~~~~~~~i~~~Gr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g---------~~-------~~~~~~l~ 361 (493)
+.+-+.-.+.+.++.+.+|++.. .+..+.+..++..... . -++++.+. .. ....++..
T Consensus 251 ~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~---~-flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~ 326 (455)
T PLN02152 251 YTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKR---P-FLWVITDKLNREAKIEGEEETEIEKIAGFRHELE 326 (455)
T ss_pred HHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCC---C-eEEEEecCcccccccccccccccccchhHHHhcc
Confidence 44445444444578888898752 4455666666665522 2 23444421 10 11222345
Q ss_pred CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeeeC-cceEEEC-----
Q 039338 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVDD-EFGFMFA----- 432 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~-~~G~~~~----- 432 (493)
++..+.+++|+.+ +++..++.++-+ + .| .++++||+.+|+|+|+-...+-.. ..+.+. +.|+-+.
T Consensus 327 ~~g~v~~W~PQ~~---iL~h~~vg~fvt-H-~G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 327 EVGMIVSWCSQIE---VLRHRAVGCFVT-H-CG-WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred CCeEEEeeCCHHH---HhCCcccceEEe-e-CC-cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 7778889998775 566667644444 2 33 459999999999999986433110 122221 2344442
Q ss_pred C-CHHHHHHHHHHHHHc
Q 039338 433 P-NVESLHKTLEAAVSE 448 (493)
Q Consensus 433 ~-d~~~l~~~i~~ll~~ 448 (493)
. +.+++.+++.+++.+
T Consensus 401 ~~~~e~l~~av~~vm~~ 417 (455)
T PLN02152 401 LVERGEIRRCLEAVMEE 417 (455)
T ss_pred cCcHHHHHHHHHHHHhh
Confidence 2 679999999999976
No 172
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.03 E-value=0.31 Score=46.11 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=83.5
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccc--cccC
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLV--KDKG 325 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~--~~Kg 325 (493)
+.++++|.+.+=.+...+.+++ .|+ ++.+.+.. ...-+..... . ....+++.+.+++.... ....
T Consensus 123 ~~l~~~~~i~vRD~~S~~~l~~-~g~---~i~~~~D~---a~~l~~~~~~----~--~~~~~~~~i~i~~r~~~~~~~~~ 189 (298)
T TIGR03609 123 RVLRGCRAISVRDAASYRLLKR-LGI---PAELAADP---VWLLPPEPWP----G--GEPLPEPVIVVSLRPWPLLDVSR 189 (298)
T ss_pred HHHccCCEEEEeCHHHHHHHHH-hCC---CceEeCCh---hhhCCCCccc----c--cccCCCCeEEEEECCCCcCCHHH
Confidence 5678999999988888888876 675 45555432 2211111000 0 00112223333433221 1223
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEEeC--CCcHHHHhhhc----CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHH
Q 039338 326 HPLLHEAFSKLMVKYPDVYLIVAGS--GPWEQRYKDFG----HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTL 399 (493)
Q Consensus 326 ~~~ll~a~~~l~~~~~~~~l~i~G~--g~~~~~~~~l~----~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~ 399 (493)
.+.+.+++..+.++. +.+++++.. ..+.+..+++. +...++...+.+++..+++++|++|-..++ .+
T Consensus 190 ~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH------~~ 262 (298)
T TIGR03609 190 LLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH------AL 262 (298)
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH------HH
Confidence 556777777776653 445544442 23333333332 222333566778999999999999976544 66
Q ss_pred HHHHHcCCcEEecC
Q 039338 400 MEAMMSGKPVMASR 413 (493)
Q Consensus 400 ~EAm~~G~PvI~s~ 413 (493)
+=|+.+|+|+|+-.
T Consensus 263 I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 263 ILAAAAGVPFVALS 276 (298)
T ss_pred HHHHHcCCCEEEee
Confidence 77999999999764
No 173
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.0047 Score=63.78 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=90.9
Q ss_pred EEEEEecccccccChHHHHHH----HHHHH-hhCCCeEEEEEeCCC-c----HHHHhh------h---cCcEEEecCCCH
Q 039338 312 LVLGVAGRLVKDKGHPLLHEA----FSKLM-VKYPDVYLIVAGSGP-W----EQRYKD------F---GHQVLVMGSMSP 372 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a----~~~l~-~~~~~~~l~i~G~g~-~----~~~~~~------l---~~~V~~~g~~~~ 372 (493)
+.++++-|+..+|...+.+.- ...++ +..|.+++++.|... . ++.++. . ..+|.|+...+-
T Consensus 488 lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdv 567 (750)
T COG0058 488 LFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDV 567 (750)
T ss_pred ceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCCh
Confidence 888999999999987665433 33333 233667778888632 1 111111 1 156899998876
Q ss_pred HHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHcCCcEEecCCCCCccceee--eCcceEEECCCH
Q 039338 373 AELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVV--DDEFGFMFAPNV 435 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~--~~~~G~~~~~d~ 435 (493)
+-...++.+|||-.+.|. .-|..|+.-+-++.-|.+-|+|-.|... |+.+ .++||+.|..+.
T Consensus 568 slA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanv-Ei~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 568 SLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANV-EIYEHVGGENGWIFGETV 632 (750)
T ss_pred hHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHH-HHHHhcCCCceEEeCCch
Confidence 677778999999998665 3488999999999999999999888887 7775 899999998733
No 174
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=96.96 E-value=0.035 Score=51.27 Aligned_cols=53 Identities=15% Similarity=0.357 Sum_probs=40.6
Q ss_pred eEEEEEec-cCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccc
Q 039338 84 LKIAVFSR-KWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQ 138 (493)
Q Consensus 84 mkIl~v~~-~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~ 138 (493)
|+|++|+. .||. ..||++..+..|++.|.+.-+.|..++...........+..
T Consensus 1 ~~V~ll~EGtYPy--v~GGVSsW~~~LI~glpe~~F~v~~i~a~~~~~~~~~y~lP 54 (268)
T PF11997_consen 1 MDVCLLTEGTYPY--VRGGVSSWVHQLIRGLPEHEFHVYAIGANPEDYGEPRYELP 54 (268)
T ss_pred CeEEEEecCcCCC--CCCchhHHHHHHHhcCCCceEEEEEEeCCccccCCCcccCC
Confidence 78999998 7886 89999999999999999887888777776533223334433
No 175
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.94 E-value=0.2 Score=46.51 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=85.6
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccccccChH
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLVKDKGHP 327 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~ 327 (493)
+++++++.+.+=.+...+.+.+ .|++. ++.++|..+= ...+.... . .... .......+..........-.+
T Consensus 123 ~~l~~~~~i~vRD~~S~~~l~~-~g~~~-~~~~~~D~af--~l~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~~~~~ 193 (286)
T PF04230_consen 123 RILSKADYISVRDEYSYELLKK-LGISG-NVKLVPDPAF--LLPPSYPD-E-DKSK---PKRNYISVSNSPSRNNEEYIE 193 (286)
T ss_pred HHHhCCCEEEECCHHHHHHHHH-cCCCC-CcEEEeCchh--hcCccccc-c-cccc---cccceeeeccccchhhhhHHH
Confidence 5577899988888888885655 67765 7777776541 11111100 0 0000 011101121111112233455
Q ss_pred HHHHHHHHHHhhCCCeEEEEEeCCCcHH---HH------hhhc-CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 328 LLHEAFSKLMVKYPDVYLIVAGSGPWEQ---RY------KDFG-HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 328 ~ll~a~~~l~~~~~~~~l~i~G~g~~~~---~~------~~l~-~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
.+.+.+..+.+.+..+.+.......... .. .... .........+.+++.++++.+|++|-..++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH------ 267 (286)
T PF04230_consen 194 EIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH------ 267 (286)
T ss_pred HHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH------
Confidence 6667777776654444444444322111 11 1111 344556666889999999999999976654
Q ss_pred HHHHHHHcCCcEEecCC
Q 039338 398 TLMEAMMSGKPVMASRF 414 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~ 414 (493)
..+=|+++|+|+|+-+.
T Consensus 268 ~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 56669999999998653
No 176
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.83 E-value=0.07 Score=54.05 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=97.8
Q ss_pred hhccCCeEEEcChhHHHH-HHHHhC-C--CCCcEEEecCCccCCC-ccCC--cccchhhhhhhCCCCCCcEEEEEecccc
Q 039338 249 FFNKYAHHVAISDSCGEM-LRDVYQ-I--PSERVHVILNGINENE-YGVD--LSLGQSFRSRIGIPKNASLVLGVAGRLV 321 (493)
Q Consensus 249 ~~~~~d~ii~~S~~~~~~-~~~~~~-~--~~~~v~vi~ngvd~~~-~~~~--~~~~~~~r~~~~i~~~~~~~i~~~Gr~~ 321 (493)
...+++.|++.|-...+. ..+.+. . ...++..|..-..... -... ......+.+-+.-.+.+..+.+.+|++.
T Consensus 212 ~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~ 291 (475)
T PLN02167 212 RFPEAKGILVNSFTELEPNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLG 291 (475)
T ss_pred hhcccCEeeeccHHHHHHHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccc
Confidence 357789999998665542 222221 0 0124554543221110 0000 0111234444443444446777888874
Q ss_pred c--ccChHHHHHHHHHHHhhCCCeEEE-EEeCCCc----------HHHHhhhcCcEEEecCCCHHHHHHHHHH--cCEEE
Q 039338 322 K--DKGHPLLHEAFSKLMVKYPDVYLI-VAGSGPW----------EQRYKDFGHQVLVMGSMSPAELRAFYNA--IDIFV 386 (493)
Q Consensus 322 ~--~Kg~~~ll~a~~~l~~~~~~~~l~-i~G~g~~----------~~~~~~l~~~V~~~g~~~~~~~~~~~~~--adv~v 386 (493)
. .+.+..+..++... +.+++ +++.... ....++..++..+.+++|+.+ +++. .+.||
T Consensus 292 ~~~~~~~~ela~~l~~~-----~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~---iL~h~~vg~fv 363 (475)
T PLN02167 292 SLPAPQIKEIAQALELV-----GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVE---ILAHKAIGGFV 363 (475)
T ss_pred cCCHHHHHHHHHHHHhC-----CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHH---HhcCcccCeEE
Confidence 2 33344454544443 23443 3442111 111222334557789998775 4544 44566
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---c-eeeeCcceEEEC---------C-CHHHHHHHHHHHHHc
Q 039338 387 NPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---T-IVVDDEFGFMFA---------P-NVESLHKTLEAAVSE 448 (493)
Q Consensus 387 ~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e-~v~~~~~G~~~~---------~-d~~~l~~~i~~ll~~ 448 (493)
. + .|+ ++++||+++|+|+|+-...+-.. . ++..-+.|+.+. . +.+++++++++++.+
T Consensus 364 t---H-~G~-nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 364 S---H-CGW-NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred e---e-CCc-ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC
Confidence 3 2 343 49999999999999986433110 1 133345566552 3 789999999999976
No 177
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.23 Score=52.23 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=120.2
Q ss_pred cEEEecCCccCCCccCCcccc--hhhhhhhCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCC----eEEEEEeC
Q 039338 277 RVHVILNGINENEYGVDLSLG--QSFRSRIGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPD----VYLIVAGS 350 (493)
Q Consensus 277 ~v~vi~ngvd~~~~~~~~~~~--~~~r~~~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~ 350 (493)
.+..+|-|+|...+....... ..-..++.-+..++.+++.+-+++..||...=+.++.++..++|+ +.++.+..
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~ 319 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIEN 319 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEec
Confidence 455677788877765432221 111122222232335677888999999999889999999888764 44544443
Q ss_pred CC--cHHHHhhh---------------c-----CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcC--
Q 039338 351 GP--WEQRYKDF---------------G-----HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSG-- 406 (493)
Q Consensus 351 g~--~~~~~~~l---------------~-----~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G-- 406 (493)
+. ..+.++++ + +-+.+...++..++.+++..+|+.+..+.+ +|..++.+|+..|.
T Consensus 320 ~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~r-dGmnl~~~e~i~~~~~ 398 (732)
T KOG1050|consen 320 PKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWR-DGMNLVFLEYILCQEN 398 (732)
T ss_pred CCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccc-cccchhhhHHHHhhcc
Confidence 21 11111110 1 223466778999999999999999999965 99999999999885
Q ss_pred --CcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 039338 407 --KPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQY 463 (493)
Q Consensus 407 --~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 463 (493)
.+.|.+..-|.. +.. +....++.+ |.+.++.+|..++..+.+.++..-...+..
T Consensus 399 ~~~~lVlsef~G~~-~tl--~d~aivvnpw~~~~~~~~i~~al~~s~~e~~~r~~~~~~~ 455 (732)
T KOG1050|consen 399 KKSVLVLSEFIGDD-TTL--EDAAIVVNPWDGDEFAILISKALTMSDEERELREPKHYKY 455 (732)
T ss_pred cCCceEEeeecccc-ccc--cccCEEECCcchHHHHHHHHHHhhcCHHHHhhcchhhhhh
Confidence 567777766655 333 334567777 999999999999998555554444444444
No 178
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.56 E-value=0.48 Score=45.93 Aligned_cols=96 Identities=10% Similarity=0.114 Sum_probs=64.4
Q ss_pred CcEEEEEecccccccC--hHHHHHHHHHHHhhCCCeEEEEEeCCC--cHHHHhhhc-----C-cEEEecCCCHHHHHHHH
Q 039338 310 ASLVLGVAGRLVKDKG--HPLLHEAFSKLMVKYPDVYLIVAGSGP--WEQRYKDFG-----H-QVLVMGSMSPAELRAFY 379 (493)
Q Consensus 310 ~~~~i~~~Gr~~~~Kg--~~~ll~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~l~-----~-~V~~~g~~~~~~~~~~~ 379 (493)
++++++..|.-.+.|. .+...+.++.+.++ +.+++++|... +.+..+++. . .+.+.|..+-.++..++
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali 258 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALI 258 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHH
Confidence 3466667776555555 45667777777653 56788888643 222233332 2 24578888889999999
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
+.||++|-. ++. .+==|.|+|+|+|+-=
T Consensus 259 ~~a~l~Vs~----DSG--p~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 259 DHARLFIGV----DSV--PMHMAAALGTPLVALF 286 (344)
T ss_pred HhCCEEEec----CCH--HHHHHHHcCCCEEEEE
Confidence 999999953 332 4445889999999863
No 179
>PLN03015 UDP-glucosyl transferase
Probab=96.39 E-value=0.95 Score=45.50 Aligned_cols=187 Identities=11% Similarity=-0.088 Sum_probs=96.8
Q ss_pred HhhccCCeEEEcChhHHH-HHHHHhCCC-------CCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecc
Q 039338 248 RFFNKYAHHVAISDSCGE-MLRDVYQIP-------SERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGR 319 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~-~~~~~~~~~-------~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr 319 (493)
....+++.+++.|-...+ ...+.+.-. ..++..|.+-+.... .. .......+-+.-.+.+..+.+.+|+
T Consensus 200 ~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGPl~~~~~--~~-~~~~~~~~WLd~~~~~sVvyvsFGS 276 (470)
T PLN03015 200 LEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGPIVRTNV--HV-EKRNSIFEWLDKQGERSVVYVCLGS 276 (470)
T ss_pred HhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecCCCCCcc--cc-cchHHHHHHHHhCCCCCEEEEECCc
Confidence 346789999999965554 222222100 123555543331111 11 1112344444444444577788898
Q ss_pred ccc--ccChHHHHHHHHHHHhhCCCeEEEEEeCC-----------C-cH-----HHHhhhc-CcEEEecCCCHHHHHHHH
Q 039338 320 LVK--DKGHPLLHEAFSKLMVKYPDVYLIVAGSG-----------P-WE-----QRYKDFG-HQVLVMGSMSPAELRAFY 379 (493)
Q Consensus 320 ~~~--~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g-----------~-~~-----~~~~~l~-~~V~~~g~~~~~~~~~~~ 379 (493)
... .+....+..++... ..++ ++++... . .. ...++.. ..+.+.+++|+.++..
T Consensus 277 ~~~~~~~q~~ela~gl~~s---~~~F-lWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~-- 350 (470)
T PLN03015 277 GGTLTFEQTVELAWGLELS---GQRF-VWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILS-- 350 (470)
T ss_pred CCcCCHHHHHHHHHHHHhC---CCcE-EEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhc--
Confidence 853 33344444444443 2223 3333210 0 00 1111111 2367789999887655
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---c-eeeeCcceEEEC------C-CHHHHHHHHHHHHH
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---T-IVVDDEFGFMFA------P-NVESLHKTLEAAVS 447 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e-~v~~~~~G~~~~------~-d~~~l~~~i~~ll~ 447 (493)
...+..+-+ + .| -++++||+++|+|+|+...-+-.. . +++.-+.|+-+. . +.+++.++++++++
T Consensus 351 -h~~vg~fvt-H-~G-wnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 351 -HRSIGGFLS-H-CG-WSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred -cCccCeEEe-c-CC-chhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 444433323 2 33 359999999999999986422110 1 122335555552 2 77999999999995
No 180
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.33 E-value=0.45 Score=43.61 Aligned_cols=118 Identities=15% Similarity=0.040 Sum_probs=67.4
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc----CcEEEecCCCHHHHHHHHHHcCEEEe
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG----HQVLVMGSMSPAELRAFYNAIDIFVN 387 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~----~~V~~~g~~~~~~~~~~~~~adv~v~ 387 (493)
.+|+.+|+ |.+..+... . . ...+.+.+.=....-+...+++ +-|-..|+.+.+.=.++++...+=++
T Consensus 131 ~i~lttG~----k~l~~f~~~---~-~-~~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~l 201 (256)
T TIGR00715 131 RVFLTAGA----SWLSHFSLS---Q-D-EAVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAV 201 (256)
T ss_pred cEEEecCc----chHHHHhhc---c-C-CceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEE
Confidence 45667776 666555432 1 1 1234555543222333445544 34567788887766778876555333
Q ss_pred CCCCC---CCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 388 PTLRP---QGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 388 ps~~~---eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
-+... .|+.-++--|+.+|+|||.-+-+..+. .+-.+. +.+++.+.+.+++
T Consensus 202 VtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~-------~~~~~~-~~~el~~~l~~~~ 255 (256)
T TIGR00715 202 VTKASGEQGGELEKVKAAEALGINVIRIARPQTIP-------GVAIFD-DISQLNQFVARLL 255 (256)
T ss_pred EEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC-------CCccCC-CHHHHHHHHHHhc
Confidence 23221 245578888999999999987765431 011222 6777777776643
No 181
>PRK14986 glycogen phosphorylase; Provisional
Probab=96.22 E-value=0.025 Score=59.40 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=97.7
Q ss_pred CCCCcEEEEEecccccccChHH-HHHH---HHHHHhhC----CCeEEEEEeCCC-c----HHHHhh---h----------
Q 039338 307 PKNASLVLGVAGRLVKDKGHPL-LHEA---FSKLMVKY----PDVYLIVAGSGP-W----EQRYKD---F---------- 360 (493)
Q Consensus 307 ~~~~~~~i~~~Gr~~~~Kg~~~-ll~a---~~~l~~~~----~~~~l~i~G~g~-~----~~~~~~---l---------- 360 (493)
+++. +.++++-|+..+|...+ ++.. +.++++.- ...++++.|... . ++.++. +
T Consensus 540 dp~s-Lfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v 618 (815)
T PRK14986 540 NPKA-LFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQI 618 (815)
T ss_pred Cccc-ceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 4444 77889999999999888 6555 44454431 247888888632 1 111111 1
Q ss_pred cC--cEEEecCCCHHHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHcCCcEEecCCCCCccceeee--CcceEEECCCH
Q 039338 361 GH--QVLVMGSMSPAELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD--DEFGFMFAPNV 435 (493)
Q Consensus 361 ~~--~V~~~g~~~~~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~--~~~G~~~~~d~ 435 (493)
.+ +|.|+...+=+-...++.+||+-.+.|. .-|..|+.-+-+|.-|.+.+++-.|... |+.++ ++||+.|..+.
T Consensus 619 ~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nv-Ei~e~vG~eN~~~fG~~~ 697 (815)
T PRK14986 619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANV-EMLEHVGEENIFIFGNTA 697 (815)
T ss_pred cCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchh-HHHHhcCCCcEEEeCCCH
Confidence 13 7999998877777889999999998665 3488999999999999999999888887 77665 88999998766
Q ss_pred HHHHHH
Q 039338 436 ESLHKT 441 (493)
Q Consensus 436 ~~l~~~ 441 (493)
+++.+.
T Consensus 698 ~ev~~~ 703 (815)
T PRK14986 698 EEVEAL 703 (815)
T ss_pred HHHHHH
Confidence 665553
No 182
>PLN02534 UDP-glycosyltransferase
Probab=96.21 E-value=1.7 Score=44.17 Aligned_cols=189 Identities=15% Similarity=0.049 Sum_probs=96.2
Q ss_pred ccCCeEEEcChhHHH-HHHHHhCC-CCCcEEEecCCccCC-----Ccc-CCcc--cchhhhhhhCCCCCCcEEEEEeccc
Q 039338 251 NKYAHHVAISDSCGE-MLRDVYQI-PSERVHVILNGINEN-----EYG-VDLS--LGQSFRSRIGIPKNASLVLGVAGRL 320 (493)
Q Consensus 251 ~~~d~ii~~S~~~~~-~~~~~~~~-~~~~v~vi~ngvd~~-----~~~-~~~~--~~~~~r~~~~i~~~~~~~i~~~Gr~ 320 (493)
..++.|++.|-...+ .+.+.+.- ...++..|.+-+... ... .... ......+-+.-.+....+.+.+|+.
T Consensus 214 ~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~ 293 (491)
T PLN02534 214 STAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSL 293 (491)
T ss_pred ccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEeccc
Confidence 457788888866555 22222210 113566565433211 000 0000 1122344444444445778888987
Q ss_pred ccccChHHHHHHHHHHHhhCCCeEEEEEeCCC---c-H-----HHHh-h-hcCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 321 VKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP---W-E-----QRYK-D-FGHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 321 ~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~---~-~-----~~~~-~-l~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
.. -..+.+.+.+.-|...+..+ ++++..+. . . +-+. . .+.++.+.|++|+.+ +++..++..+-+
T Consensus 294 ~~-~~~~q~~e~a~gl~~~~~~f-lW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~---iL~h~~v~~fvt 368 (491)
T PLN02534 294 CR-LVPSQLIELGLGLEASKKPF-IWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVL---ILSHPAIGGFLT 368 (491)
T ss_pred cc-CCHHHHHHHHHHHHhCCCCE-EEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHH---HhcCCccceEEe
Confidence 53 23333444444443332223 34444211 0 0 1112 2 236788889999865 566677744334
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCcc---c-eeeeCcceEEEC---------------C-CHHHHHHHHHHHHH
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKG---T-IVVDDEFGFMFA---------------P-NVESLHKTLEAAVS 447 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e-~v~~~~~G~~~~---------------~-d~~~l~~~i~~ll~ 447 (493)
.+-.++++||+++|+|+|+....+-.. . +++.=+.|+-+. . +.+++++++++++.
T Consensus 369 ---H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 369 ---HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred ---cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 233569999999999999986432110 0 111112222210 1 67899999999996
No 183
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=96.12 E-value=0.15 Score=42.45 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=71.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
|||+++.++| .|.....+..|++.+ .|+++++|..... ..|+.
T Consensus 1 M~ILlle~y~-----ggSHk~~~~~L~~~~---~~~~~lltLP~r~-----------------------------w~WRm 43 (168)
T PF12038_consen 1 MRILLLEPYY-----GGSHKQWADGLAAHS---EHEWTLLTLPARK-----------------------------WHWRM 43 (168)
T ss_pred CeEEEEcccc-----ccCHHHHHHHHHHhc---cCCEEEEEcCCCc-----------------------------ccccc
Confidence 8999999864 234444444455554 4899999875544 11111
Q ss_pred cc-chHHHHHHhcCCCCcEEEeCcc-chhHHhh-----hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHH
Q 039338 164 SK-GWEQFDEENQREPFDVVHSESV-ALPHWLA-----RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSL 236 (493)
Q Consensus 164 ~~-~~~~~~~~~~~~~~DiI~~~~~-~~~~~~~-----~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (493)
.. +.....+......+|+|++.+. .+..+++ ...| .++.+|+-...+..+.- ..+..
T Consensus 44 Rg~AL~~a~~~~~~~~~dll~aTsmldLa~l~gL~p~l~~~p-~ilYFHENQl~YP~~~~---------------~~rd~ 107 (168)
T PF12038_consen 44 RGAALYFAQQIPLSHSYDLLFATSMLDLATLRGLRPDLANVP-KILYFHENQLAYPVSPG---------------QERDF 107 (168)
T ss_pred CCCHHHHhhccccccCCCEEEeeccccHHHHHhhccCCCCCC-EEEEEecCcccCCCCCC---------------ccccc
Confidence 11 1122234445667899999875 2333322 2345 89999985543322211 01111
Q ss_pred HHHHHHHHHHHHhhccCCeEEEcChhHHHHHHH
Q 039338 237 QGVMLKVLNEIRFFNKYAHHVAISDSCGEMLRD 269 (493)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~ 269 (493)
...+..+ ...-.||.|+..|.+-++.+.+
T Consensus 108 ~~~~~ni----~saLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 108 QYGMNNI----YSALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred cHHHHHH----HHHHhceeeeecchhhHHHHHH
Confidence 1111111 2233689999999998886655
No 184
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.39 Score=47.02 Aligned_cols=187 Identities=12% Similarity=0.170 Sum_probs=111.3
Q ss_pred hhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchh--hhhhhCCCCCCcEEEEEeccccccc--
Q 039338 249 FFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQS--FRSRIGIPKNASLVLGVAGRLVKDK-- 324 (493)
Q Consensus 249 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~--~r~~~~i~~~~~~~i~~~Gr~~~~K-- 324 (493)
...+.|...+.+......+.+-+++..+++.....+-....+......... .+..++++.++ .+|+|.-.+.+..
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k-~vIlyaPTfr~~~~~ 223 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDK-KVILYAPTFRDNDVL 223 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccC-ceEEecCCccCCccc
Confidence 345678888888888888888788877777666555444334332222222 34456666666 6677988887654
Q ss_pred -C---hHHHH--HHHHHHHhhCCCeEEEEEeCCCcHHHHh---hhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCC
Q 039338 325 -G---HPLLH--EAFSKLMVKYPDVYLIVAGSGPWEQRYK---DFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGL 395 (493)
Q Consensus 325 -g---~~~ll--~a~~~l~~~~~~~~l~i~G~g~~~~~~~---~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~ 395 (493)
+ ....+ +.+.+...+ .+..+++-=.....+... +..+.+...-. ..++.++|..+|++|. -+
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~-~~~~ii~k~Hp~is~~~~~~~~~~~~~~~vs~--~~di~dll~~sDiLIT------Dy 294 (388)
T COG1887 224 IGTQFFNLDIDIEKLKEKLGE-NEYVIIVKPHPLISDKIDKRYALDDFVLDVSD--NADINDLLLVSDILIT------DY 294 (388)
T ss_pred cchhhhhhhhhHHHHHHhhcc-CCeEEEEecChhhhhhhhhhhhccceeEeccc--chhHHHHHhhhCEEEe------ec
Confidence 2 22333 333333221 355555543322221111 12232333333 3799999999999994 35
Q ss_pred ChHHHHHHHcCCcEEecCCCCCccce---------eeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 396 DLTLMEAMMSGKPVMASRFPSIKGTI---------VVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 396 ~~~~~EAm~~G~PvI~s~~~~~~~e~---------v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
+.+.+|+|...+|||..-... . +. ......|-++. +.+++.++|.....+
T Consensus 295 SSv~fdf~~l~KPiify~~D~-~-~y~~~rg~~~d~~~~~Pg~~~~-~~~~li~ai~~~~~~ 353 (388)
T COG1887 295 SSVIFDFMLLDKPIIFYTYDL-E-QYDELRGFYLDYKFEAPGEVVE-TQEELIDAIKPYDED 353 (388)
T ss_pred hHHHHHHHHhcCcEEEEecCh-H-HHHhhhhhhhhHHhcCCccccc-cHHHHHHHHHhhhcc
Confidence 669999999999999863211 1 11 11223344444 778899999888876
No 185
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.76 E-value=0.18 Score=50.62 Aligned_cols=143 Identities=16% Similarity=0.182 Sum_probs=97.8
Q ss_pred cccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHH
Q 039338 322 KDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLME 401 (493)
Q Consensus 322 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~E 401 (493)
..||-+..++++.+. -+++-.|.+... ....+...|.-+|.++++++..+++.+.++|=...-.|| -+.+|
T Consensus 289 ~w~~k~~~l~~l~~~----~eih~tV~~~~~---~~~~~P~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~Eg--PaPlE 359 (559)
T PF15024_consen 289 MWKGKEKYLDVLHKY----MEIHGTVYDEPQ---RPPNVPSFVKNHGILSGDEFQQLLRKAKVFIGLGFPYEG--PAPLE 359 (559)
T ss_pred hhcCcHHHHHHHHhh----cEEEEEeccCCC---CCcccchhhhhcCcCCHHHHHHHHHhhhEeeecCCCCCC--CChHH
Confidence 367777777777654 356666655322 222334568889999999999999999999954422233 48999
Q ss_pred HHHcCCcEEecCCCCCcc--------------ce---------eeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHH
Q 039338 402 AMMSGKPVMASRFPSIKG--------------TI---------VVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRG 457 (493)
Q Consensus 402 Am~~G~PvI~s~~~~~~~--------------e~---------v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~ 457 (493)
|++.|+|.|-.....-.. ++ ....-.-+.++. |.+++.+||++++.+..
T Consensus 360 Aia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v------- 432 (559)
T PF15024_consen 360 AIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATPV------- 432 (559)
T ss_pred HHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC-------
Confidence 999999998765421110 11 111234567777 99999999999999832
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 039338 458 EACRQYAASMFTANKMALAYERLFLC 483 (493)
Q Consensus 458 ~~~~~~~~~~fs~~~~~~~~~~~~~~ 483 (493)
.-++--.|+.+.+.+++..+++.
T Consensus 433 ---~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 433 ---EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred ---CCcCCcccCHHHHHHHHHHHHHh
Confidence 13444558999999998777653
No 186
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.61 E-value=0.1 Score=47.85 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCcEEEEEecccccccChH--HHHHHHHHHHhhCCCeEEEEEeCCCc--HHHHhhhc-----CcEEEecCCCHHHHHHH
Q 039338 308 KNASLVLGVAGRLVKDKGHP--LLHEAFSKLMVKYPDVYLIVAGSGPW--EQRYKDFG-----HQVLVMGSMSPAELRAF 378 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~l~-----~~V~~~g~~~~~~~~~~ 378 (493)
.+++++++..|.-.+.|.+. ...+.+..+.+.+ .+++++|.+.+ .+..+++. ..+.+.|..+-.++..+
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 34457777888767777754 4778888887654 78888887655 33333332 26888899888999999
Q ss_pred HHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEec
Q 039338 379 YNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS 412 (493)
Q Consensus 379 ~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s 412 (493)
++.||++|-+- +. .+-=|.++|+|+|+-
T Consensus 181 i~~a~~~I~~D----tg--~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 181 ISRADLVIGND----TG--PMHLAAALGTPTVAL 208 (247)
T ss_dssp HHTSSEEEEES----SH--HHHHHHHTT--EEEE
T ss_pred HhcCCEEEecC----Ch--HHHHHHHHhCCEEEE
Confidence 99999999643 32 455589999999987
No 187
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.54 E-value=0.066 Score=56.41 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=97.0
Q ss_pred CCCCcEEEEEecccccccChHH-HHHH---HHHHHhhC----CCeEEEEEeCCC-c----HHHHhh---h----------
Q 039338 307 PKNASLVLGVAGRLVKDKGHPL-LHEA---FSKLMVKY----PDVYLIVAGSGP-W----EQRYKD---F---------- 360 (493)
Q Consensus 307 ~~~~~~~i~~~Gr~~~~Kg~~~-ll~a---~~~l~~~~----~~~~l~i~G~g~-~----~~~~~~---l---------- 360 (493)
+++. +..+++-|+..+|...+ ++.. +.++++.- .+.++++.|... . ++.++. +
T Consensus 527 dp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 605 (797)
T cd04300 527 DPDS-LFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDV 605 (797)
T ss_pred CCCc-cEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhc
Confidence 4444 77889999999999888 5554 45554431 247788888632 1 111111 1
Q ss_pred cC--cEEEecCCCHHHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHcCCcEEecCCCCCccceeee--CcceEEECCCH
Q 039338 361 GH--QVLVMGSMSPAELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD--DEFGFMFAPNV 435 (493)
Q Consensus 361 ~~--~V~~~g~~~~~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~--~~~G~~~~~d~ 435 (493)
.+ +|.|+....=+-...++.+||+-.+.|. .-|..|+.-+-+|.-|.+.|+|--|... |+.++ ++|+++|-.+.
T Consensus 606 ~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanv-Ei~e~vG~eN~fiFG~~~ 684 (797)
T cd04300 606 GDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIAEEVGEENIFIFGLTA 684 (797)
T ss_pred CCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhH-HHHHHhCcCcEEEeCCCH
Confidence 13 6999998877777889999999998665 3488899999999999999999888877 77666 78999998766
Q ss_pred HHHHHH
Q 039338 436 ESLHKT 441 (493)
Q Consensus 436 ~~l~~~ 441 (493)
++..+.
T Consensus 685 ~ev~~~ 690 (797)
T cd04300 685 EEVEAL 690 (797)
T ss_pred HHHHHH
Confidence 665543
No 188
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=95.54 E-value=0.057 Score=46.30 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=54.7
Q ss_pred hHHHHHHhcCCCCcEEEeCccchhH-----Hhhhc----cCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHH
Q 039338 167 WEQFDEENQREPFDVVHSESVALPH-----WLARN----VTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQ 237 (493)
Q Consensus 167 ~~~~~~~~~~~~~DiI~~~~~~~~~-----~~~~~----~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (493)
.+.+.+.+++.+||+|++..+.... +..++ +| ++..+-|+.. .|.
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p-~~tvvTD~~~--~H~----------------------- 131 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIP-VVTVVTDFDT--VHP----------------------- 131 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCc-EEEEEcCCCC--CCc-----------------------
Confidence 3467777789999999987663222 22222 23 4544444311 010
Q ss_pred HHHHHHHHHHHhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCC
Q 039338 238 GVMLKVLNEIRFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNG 284 (493)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ng 284 (493)
.++-+.+|..++.|+.+++.+.+ .|++++++.+..-+
T Consensus 132 ---------~W~~~~~D~y~Vase~~~~~l~~-~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 132 ---------FWIHPGVDRYFVASEEVKEELIE-RGIPPERIHVTGIP 168 (169)
T ss_pred ---------CeecCCCCEEEECCHHHHHHHHH-cCCChhHEEEeCcc
Confidence 14457899999999999999999 79999999886543
No 189
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.02 E-value=0.065 Score=56.17 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=96.1
Q ss_pred CCCCcEEEEEecccccccChHH-HHHHHH---HHHhhC----CCeEEEEEeCCC-c----HHHHh---hh----------
Q 039338 307 PKNASLVLGVAGRLVKDKGHPL-LHEAFS---KLMVKY----PDVYLIVAGSGP-W----EQRYK---DF---------- 360 (493)
Q Consensus 307 ~~~~~~~i~~~Gr~~~~Kg~~~-ll~a~~---~l~~~~----~~~~l~i~G~g~-~----~~~~~---~l---------- 360 (493)
+++. +.++++-|+..+|...+ ++..+. ++++.- ...++++.|... . +..++ .+
T Consensus 526 dp~s-lfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 526 NPQA-IFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred Cchh-cchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhh
Confidence 4444 77788999999999887 665544 444330 237888888632 1 11111 11
Q ss_pred cC--cEEEecCCCHHHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHcCCcEEecCCCCCccceeee--CcceEEECCCH
Q 039338 361 GH--QVLVMGSMSPAELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD--DEFGFMFAPNV 435 (493)
Q Consensus 361 ~~--~V~~~g~~~~~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~--~~~G~~~~~d~ 435 (493)
.+ +|.|+...+=+-...++.+||+-.+.|. .-|..|+.-+-+|.-|.+.|++-.|... |+.++ ++||+.|-.+.
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanv-Ei~e~vG~eN~f~fG~~~ 683 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANV-EIAEQVGEENIFIFGHTV 683 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHH-HHHHHhCcCcEEEeCCCH
Confidence 12 6999998877778889999999998665 3488899999999999999999888877 66654 78999998766
Q ss_pred HHHHHH
Q 039338 436 ESLHKT 441 (493)
Q Consensus 436 ~~l~~~ 441 (493)
+++.+.
T Consensus 684 ~ev~~~ 689 (798)
T PRK14985 684 EQVKAL 689 (798)
T ss_pred HHHHHH
Confidence 665543
No 190
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=94.99 E-value=0.98 Score=47.18 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=113.0
Q ss_pred hccCCeEEEcChhHHHHHHH-----HhCCCCCcEEEecCCccCCCccCC--ccc--------------------------
Q 039338 250 FNKYAHHVAISDSCGEMLRD-----VYQIPSERVHVILNGINENEYGVD--LSL-------------------------- 296 (493)
Q Consensus 250 ~~~~d~ii~~S~~~~~~~~~-----~~~~~~~~v~vi~ngvd~~~~~~~--~~~-------------------------- 296 (493)
+..+..+-.+|.--.+.+++ .+++.++++.-+-|||....|-.. +..
T Consensus 329 l~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~ 408 (713)
T PF00343_consen 329 LRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFA 408 (713)
T ss_dssp HHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGC
T ss_pred HHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhh
Confidence 34456678888777666543 344556789999999988777421 100
Q ss_pred --------------------chhhhhhhC--CCCCCcEEEEEecccccccChHH-H---HHHHHHHHhh----CCCeEEE
Q 039338 297 --------------------GQSFRSRIG--IPKNASLVLGVAGRLVKDKGHPL-L---HEAFSKLMVK----YPDVYLI 346 (493)
Q Consensus 297 --------------------~~~~r~~~~--i~~~~~~~i~~~Gr~~~~Kg~~~-l---l~a~~~l~~~----~~~~~l~ 346 (493)
.+.+++..+ ++++. +..+++-|+..+|...+ + ++-+.++++. ...++++
T Consensus 409 dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~s-lfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~I 487 (713)
T PF00343_consen 409 DDEEFQEELREVKQENKERLAEYIKKRTGVELDPDS-LFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFI 487 (713)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTS-EEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcch-hhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEE
Confidence 011122344 34444 78889999999999877 3 3445555553 1358899
Q ss_pred EEeCC-Cc----HHHHhh-------------hcC--cEEEecCCCHHHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHc
Q 039338 347 VAGSG-PW----EQRYKD-------------FGH--QVLVMGSMSPAELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMS 405 (493)
Q Consensus 347 i~G~g-~~----~~~~~~-------------l~~--~V~~~g~~~~~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~ 405 (493)
+.|.. |. ++.++. ..+ +|.|+...+-+-...++.++||-++.+. -.|..|+.-+-+|.-
T Consensus 488 FaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~N 567 (713)
T PF00343_consen 488 FAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMN 567 (713)
T ss_dssp EE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHT
T ss_pred EeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcC
Confidence 99963 11 112211 113 6999999887778889999999999665 348899999999999
Q ss_pred CCcEEecCCCCCccceee--eCcceEEECCCHHHHHH
Q 039338 406 GKPVMASRFPSIKGTIVV--DDEFGFMFAPNVESLHK 440 (493)
Q Consensus 406 G~PvI~s~~~~~~~e~v~--~~~~G~~~~~d~~~l~~ 440 (493)
|.+.+++-.|... |+.+ ..++.++|-.+.+++.+
T Consensus 568 GaL~lstlDG~ni-Ei~e~vG~eN~fiFG~~~~ev~~ 603 (713)
T PF00343_consen 568 GALNLSTLDGWNI-EIAEAVGEENIFIFGLTAEEVEE 603 (713)
T ss_dssp T-EEEEESSTCHH-HHHHHH-GGGSEEES-BHHHHHH
T ss_pred CCeEEecccchhH-HHHHhcCCCcEEEcCCCHHHHHH
Confidence 9999999888877 6654 35688998766666543
No 191
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=94.79 E-value=0.7 Score=47.31 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=75.2
Q ss_pred EEEEEeccccc-----ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH-HHhhhc----CcEEEecCCCHHHHHHHHHH
Q 039338 312 LVLGVAGRLVK-----DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ-RYKDFG----HQVLVMGSMSPAELRAFYNA 381 (493)
Q Consensus 312 ~~i~~~Gr~~~-----~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~-~~~~l~----~~V~~~g~~~~~~~~~~~~~ 381 (493)
.+++..|.... .+....+..++..+ +++.|+..=.+.... ..+.+. .+|.+.+++|+.++. +..
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~----~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll--l~H 352 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL----QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL--LDH 352 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC----CCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh--cCC
Confidence 67778888763 33444555555555 456655544332222 223332 479999999988876 222
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCC----CccceeeeCcceEEECC--CHHHHHHHHHHHHHcCcHH
Q 039338 382 IDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPS----IKGTIVVDDEFGFMFAP--NVESLHKTLEAAVSEGPMR 452 (493)
Q Consensus 382 adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~----~~~e~v~~~~~G~~~~~--d~~~l~~~i~~ll~~~~~~ 452 (493)
..+.++-+ + .|++ +++|++.+|+|+|+.+.-+ ....+...+..++.... +...+.+++..++.+ ++.
T Consensus 353 ~~v~~FvT-H-gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~-~~y 425 (496)
T KOG1192|consen 353 PAVGGFVT-H-GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILEN-EEY 425 (496)
T ss_pred CcCcEEEE-C-Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcC-hHH
Confidence 22333334 3 5665 5599999999999654321 11123344444444443 333488888888877 444
No 192
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=94.68 E-value=0.16 Score=48.10 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC-cEEecCCCCCc-cceeeeCcceEEECC-CHHHHHHHHH
Q 039338 372 PAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK-PVMASRFPSIK-GTIVVDDEFGFMFAP-NVESLHKTLE 443 (493)
Q Consensus 372 ~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~-PvI~s~~~~~~-~e~v~~~~~G~~~~~-d~~~l~~~i~ 443 (493)
..+..+.|+.+.+++.|.-. .....-++|||++|| |||.++.--.+ ++++.-....+.++. +..+|.+.|+
T Consensus 227 ~~~~~~~l~~S~FCL~p~G~-~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCPRGD-GPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred chHHHHhcccCeEEEECCCC-CcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHh
Confidence 35688999999999998732 336788999999999 88887643333 245655677778876 6655555544
No 193
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.67 E-value=0.52 Score=43.87 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHhhCCCeEEEEEeCC-----CcHHHHhhhc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh
Q 039338 325 GHPLLHEAFSKLMVKYPDVYLIVAGSG-----PWEQRYKDFG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL 397 (493)
Q Consensus 325 g~~~ll~a~~~l~~~~~~~~l~i~G~g-----~~~~~~~~l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~ 397 (493)
....+++.+..+.+..|+.+++|==.. .....+.++. .++.+... ...+.+++..||.++.-+ +.
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ll~~s~~Vvtin------St 209 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDD--DVNLYELLEQSDAVVTIN------ST 209 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECC--CCCHHHHHHhCCEEEEEC------CH
Confidence 456677777888777788888775432 1223344432 44444332 247889999999999633 45
Q ss_pred HHHHHHHcCCcEEecCCCC
Q 039338 398 TLMEAMMSGKPVMASRFPS 416 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~~~~ 416 (493)
+-+||+.+|+||++....-
T Consensus 210 vGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 210 VGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred HHHHHHHcCCceEEecCcc
Confidence 9999999999999986433
No 194
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.52 E-value=0.15 Score=53.59 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=96.3
Q ss_pred CCCCcEEEEEecccccccChHH-HHHH---HHHHHhhC----CCeEEEEEeCCC-c----HHHHhh---h----------
Q 039338 307 PKNASLVLGVAGRLVKDKGHPL-LHEA---FSKLMVKY----PDVYLIVAGSGP-W----EQRYKD---F---------- 360 (493)
Q Consensus 307 ~~~~~~~i~~~Gr~~~~Kg~~~-ll~a---~~~l~~~~----~~~~l~i~G~g~-~----~~~~~~---l---------- 360 (493)
+++. +..+++-|+..+|...+ ++.. +.++++.- ...++++.|... . ++.++. +
T Consensus 524 dp~s-lfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 524 DPNS-IFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred Cccc-cchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 3444 77788999999999888 5555 44444331 246788888632 1 111111 1
Q ss_pred cC--cEEEecCCCHHHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHcCCcEEecCCCCCccceeee--CcceEEECCCH
Q 039338 361 GH--QVLVMGSMSPAELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD--DEFGFMFAPNV 435 (493)
Q Consensus 361 ~~--~V~~~g~~~~~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~--~~~G~~~~~d~ 435 (493)
.+ +|.|+...+=+-...++.+||+-.+.|. .-|..|+.-+-+|.-|.+.|+|--|... |+.++ ++|+++|-.+.
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanv-Ei~e~vG~eN~fiFG~~~ 681 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANV-EIREEVGAENIFIFGLTV 681 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhH-HHHHHhCcccEEEcCCCH
Confidence 13 6999998877777889999999998665 3488899999999999999999888877 77666 78999998776
Q ss_pred HHHHHH
Q 039338 436 ESLHKT 441 (493)
Q Consensus 436 ~~l~~~ 441 (493)
++..+.
T Consensus 682 ~ev~~~ 687 (794)
T TIGR02093 682 EEVEAL 687 (794)
T ss_pred HHHHHH
Confidence 666544
No 195
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=92.67 E-value=0.41 Score=41.63 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=25.6
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecC
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILN 283 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~n 283 (493)
..++..|.|.+.|+..++.+.+ .|.+.+++.+..|
T Consensus 145 ~~l~~f~~i~aqs~~da~r~~~-lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 145 PLLSRFDRILAQSEADAERFRK-LGAPPERVHVTGN 179 (186)
T ss_dssp HHGGG-SEEEESSHHHHHHHHT-TT-S--SEEE---
T ss_pred HHHHhCCEEEECCHHHHHHHHH-cCCCcceEEEeCc
Confidence 5678999999999999999998 6888889999887
No 196
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.41 E-value=1.2 Score=44.60 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=27.7
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
..+.|||++. ||.+..-..|++.|.++||+|+++...
T Consensus 117 ~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 117 GRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred ccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456998877 444455567999999999999988643
No 197
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=92.35 E-value=11 Score=36.07 Aligned_cols=315 Identities=15% Similarity=0.132 Sum_probs=170.5
Q ss_pred CCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhc
Q 039338 98 TPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQ 175 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (493)
...|+...+.-|+..|.+.. ++|+++....... .+... ..+...+. ...+...
T Consensus 16 W~NGi~QN~~fL~~lL~qs~~v~~V~Lvn~g~~~~-~~~~~--------~~~~~~~~--------------~~~~~~~-- 70 (364)
T PF10933_consen 16 WENGINQNCIFLAMLLQQSPRVESVVLVNGGDGNP-IPAAL--------MLDLLDVP--------------LVDFDDA-- 70 (364)
T ss_pred hhhchhhHHHHHHHHHhhCCCcceEEEEECCCCCc-CCccc--------ccccCCCc--------------eecHHHh--
Confidence 45688888899999999875 7899988755430 11000 01111111 1223333
Q ss_pred CCCCcEEEeCccchh-----HHhhhccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhh
Q 039338 176 REPFDVVHSESVALP-----HWLARNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFF 250 (493)
Q Consensus 176 ~~~~DiI~~~~~~~~-----~~~~~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (493)
..+.||++--+..+. .+.+++.+ ++....|..+....... +..++.... -.-
T Consensus 71 ~~~lDVlIEmg~ql~~~~~~~~~~~G~K-vV~y~~GndYv~~~E~~---lF~k~~~~~-------------------f~~ 127 (364)
T PF10933_consen 71 IDELDVLIEMGAQLDPEWLDYMRARGGK-VVSYRCGNDYVMDIESM---LFNKPSGHL-------------------FNG 127 (364)
T ss_pred cccCCEEEEccCccCHHHHHHHHHcCCe-EEEEeCCchHHHHhhHH---hcCCCCCcc-------------------CCC
Confidence 237899987665333 33334444 88888886554322111 111111000 012
Q ss_pred ccCCeEEEcChhH---HHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCC-CCcEEE-EEecccccccC
Q 039338 251 NKYAHHVAISDSC---GEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPK-NASLVL-GVAGRLVKDKG 325 (493)
Q Consensus 251 ~~~d~ii~~S~~~---~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~-~~~~~i-~~~Gr~~~~Kg 325 (493)
...|.|.++-+.. ..+++-.+ ..+++++|.--++-++......-+.-..++|-.+ .....+ +|=-+++-.|.
T Consensus 128 ~~yD~VW~lPq~~~~~~~yl~~l~---r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~ 204 (364)
T PF10933_consen 128 APYDEVWTLPQFENTCAPYLETLH---RCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKT 204 (364)
T ss_pred CCCceeEeccchhhhchHHHHHHh---cCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEee
Confidence 3567777665533 23444433 4567888875555443221111000001122211 111222 23344444554
Q ss_pred h---HHHHHHHHHHHhhCCC-eE-EEEEeCCCcH--H----HHhhhc----CcEEEecCCCHHHHHHHHHH-cCEEEeCC
Q 039338 326 H---PLLHEAFSKLMVKYPD-VY-LIVAGSGPWE--Q----RYKDFG----HQVLVMGSMSPAELRAFYNA-IDIFVNPT 389 (493)
Q Consensus 326 ~---~~ll~a~~~l~~~~~~-~~-l~i~G~g~~~--~----~~~~l~----~~V~~~g~~~~~~~~~~~~~-adv~v~ps 389 (493)
- -++.|++-+-. |+ +. +.++-.-..+ . ....+. ....|.|.. +++.++++ .|++|.--
T Consensus 205 ~~~PmLi~E~aYR~~---P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHq 278 (364)
T PF10933_consen 205 CFIPMLICEEAYRAD---PDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQ 278 (364)
T ss_pred cCccHHHHHHHHHhC---hhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEecc
Confidence 2 23334443332 32 33 3333322111 1 112221 677888887 66676665 68888544
Q ss_pred CCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc
Q 039338 390 LRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMF 468 (493)
Q Consensus 390 ~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~f 468 (493)
|.-+....-+||+.-|=|.|-.. .++. +.|+.++. |..+=+++|.+++.+....++...+++++.+.. +
T Consensus 279 -WeN~lNYlY~daLyggYPLVHNS------~~l~--d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~-~ 348 (364)
T PF10933_consen 279 -WENPLNYLYYDALYGGYPLVHNS------PLLK--DVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDR-L 348 (364)
T ss_pred -ccchhhHHHHHHHhcCCCcccCc------chhc--ccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-h
Confidence 55567778999999999999543 3333 28999999 999999999999988677888888888888776 4
Q ss_pred CH--HHHHHHHHH
Q 039338 469 TA--NKMALAYER 479 (493)
Q Consensus 469 s~--~~~~~~~~~ 479 (493)
+. +..++.|.+
T Consensus 349 ~p~n~~nv~~y~~ 361 (364)
T PF10933_consen 349 SPENPANVRAYEA 361 (364)
T ss_pred CCCCHHHHHHHHH
Confidence 43 334444443
No 198
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=92.28 E-value=1.7 Score=43.16 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=75.4
Q ss_pred eEEEEEecc--CC-----CCCCCCchHHHHHHHHHHHHhC--------CC----EEEEEecCCCCCCCCCCccccCCCCC
Q 039338 84 LKIAVFSRK--WP-----ISTTPGGMERHAHTLHVALARR--------GH----RVHIFTSPVDNINSPSISHQENDDGS 144 (493)
Q Consensus 84 mkIl~v~~~--~p-----~~~~~gG~~~~~~~l~~~L~~~--------G~----~V~v~~~~~~~~~~~~~~~~~~~~~~ 144 (493)
-+|++++.+ |- ..+..||--.++..++++|.+. |- +|.++|.--.+ ........... .
T Consensus 273 f~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd--~~~t~~~q~le-~ 349 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPD--AKGTTCNQRLE-K 349 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TB--TTCGGGTSSEE-E
T ss_pred EEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccC--CcCCCcccccc-c
Confidence 489999873 10 1147799999999999999753 43 47777764433 11111111110 0
Q ss_pred CCCCCceEee---cCCCC----cc-ccccchHHHH--------HHh--cCCCCcEEEeCcc--ch-hHHhhh--ccCcEE
Q 039338 145 NNKYPLLHFH---EGEAD----KW-RYSKGWEQFD--------EEN--QREPFDVVHSESV--AL-PHWLAR--NVTNLA 201 (493)
Q Consensus 145 ~~~~~~~~~~---~~~~~----~~-~~~~~~~~~~--------~~~--~~~~~DiI~~~~~--~~-~~~~~~--~~p~~v 201 (493)
..+....+++ .+... .| .....|..+. ++. ...+||+||.|-. .+ ...++. ++| ..
T Consensus 350 ~~gt~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~-~~ 428 (550)
T PF00862_consen 350 VSGTENARILRVPFGPEKGILRKWISRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVT-QC 428 (550)
T ss_dssp ETTESSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-E-EE
T ss_pred cCCCCCcEEEEecCCCCcchhhhccchhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCc-ee
Confidence 0111112222 11111 11 1122232221 111 2578999999843 22 233333 446 67
Q ss_pred EEeccchhhhh-hhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhccCCeEEEcChhHHH
Q 039338 202 VSWHGIALESL-QSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNKYAHHVAISDSCGE 265 (493)
Q Consensus 202 ~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~ 265 (493)
.+-|...-... .++++.+ -...-+....++..+...+..+|.||+-+.....
T Consensus 429 ~iaHsLek~Ky~~s~~~w~------------e~e~~Yhfs~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 429 FIAHSLEKTKYEDSDLYWK------------EIEEKYHFSCQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp EE-SS-HHHHHHTTTTTSH------------HHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred hhhhccccccccccCCCHH------------HHHhhccchhhhhHHHHHhhcCCEEEEcchHhhc
Confidence 77776532111 1221111 1133445556666677788999999998765544
No 199
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=91.57 E-value=2.3 Score=34.82 Aligned_cols=95 Identities=18% Similarity=0.189 Sum_probs=56.9
Q ss_pred EEEEEecccccccChHHHHH------HHHHHHhhCCCeEEEE-EeCCC----cH-HHHhhhcCcEEEecCCCHHHHHHHH
Q 039338 312 LVLGVAGRLVKDKGHPLLHE------AFSKLMVKYPDVYLIV-AGSGP----WE-QRYKDFGHQVLVMGSMSPAELRAFY 379 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~------a~~~l~~~~~~~~l~i-~G~g~----~~-~~~~~l~~~V~~~g~~~~~~~~~~~ 379 (493)
.+|+.+|.-. ++.++. +...|.+.+- .+|+| +|+|. .. +... ....+.+.|+-=...+.+.+
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~-~kLiiQ~Grg~~~~~d~~~~~~-k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGF-TKLIIQIGRGQPFFGDPIDLIR-KNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCc-cEEEEEecCCccCCCCHHHhhc-ccCCeEEEEEecCccHHHHH
Confidence 5677888754 555553 3445555442 34444 67762 11 1111 22444444443235888999
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCC
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
+.||+++- + .|.| +.+|.+..|+|.|+--...+
T Consensus 79 ~~AdlVIs---H-AGaG-S~letL~l~KPlivVvNd~L 111 (170)
T KOG3349|consen 79 RSADLVIS---H-AGAG-SCLETLRLGKPLIVVVNDSL 111 (170)
T ss_pred hhccEEEe---c-CCcc-hHHHHHHcCCCEEEEeChHh
Confidence 99999994 2 3333 99999999999988754443
No 200
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.83 E-value=4.5 Score=36.96 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=39.7
Q ss_pred CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
-+|..++++++++..+++..||+-+. ++|. +..-|..+|+|.+=.-
T Consensus 238 lrvvklPFvpqddyd~LL~lcD~n~V---RGED---SFVRAq~agkPflWHI 283 (370)
T COG4394 238 LRVVKLPFVPQDDYDELLWLCDFNLV---RGED---SFVRAQLAGKPFLWHI 283 (370)
T ss_pred eEEEEecCCcHhHHHHHHHhccccee---ecch---HHHHHHHcCCCcEEEe
Confidence 46788999999999999999999876 5676 7889999999998653
No 201
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=90.71 E-value=3 Score=40.16 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=69.3
Q ss_pred chhhhhhhCCCC--CCcEEEEEecccccccC-hHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh------h-------
Q 039338 297 GQSFRSRIGIPK--NASLVLGVAGRLVKDKG-HPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD------F------- 360 (493)
Q Consensus 297 ~~~~r~~~~i~~--~~~~~i~~~Gr~~~~Kg-~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~------l------- 360 (493)
+..+..++|++. .+...+..+ ...+. +..++++++.- ...+.+.|.++- ....++. +
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF---~Ye~~~l~~ll~~~~~~---~~pv~llvp~g~-~~~~~~~~~~~~~~~~g~~~~ 240 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLF---CYENAALASLLDAWAAS---PKPVHLLVPEGR-ALNSLAAWLGDALLQAGDSWQ 240 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEE---eCCchHHHHHHHHHhcC---CCCeEEEecCCc-cHHHHHHHhccccccCccccc
Confidence 455667788752 222443332 23333 67777777744 246777777642 2222210 1
Q ss_pred --cCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 361 --GHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 361 --~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
.-.+.+++++++++...++-.||+-++ ++|- +.+=|+.+|+|.|=.-
T Consensus 241 ~g~l~l~~lPF~~Q~~yD~LLw~cD~NfV---RGED---SfVRAqwAgkPFvWhI 289 (374)
T PF10093_consen 241 RGNLTLHVLPFVPQDDYDRLLWACDFNFV---RGED---SFVRAQWAGKPFVWHI 289 (374)
T ss_pred cCCeEEEECCCCCHHHHHHHHHhCccceE---ecch---HHHHHHHhCCCceEec
Confidence 146889999999999999999999776 6788 8899999999999653
No 202
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=2.8 Score=33.64 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=59.4
Q ss_pred EEEecccccccChHHHHHH--HHHHHhhCCCeEEE-EEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 314 LGVAGRLVKDKGHPLLHEA--FSKLMVKYPDVYLI-VAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 314 i~~~Gr~~~~Kg~~~ll~a--~~~l~~~~~~~~l~-i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
|+.+|.- ..++..++.- ...+.+.+ ..+++ =+|+|.... . ...+++|+--.+++..++..|.+++. .
T Consensus 3 fVTvGst--f~~f~rlv~k~e~~el~~~i-~e~lIvQyGn~d~kp----v-agl~v~~F~~~~kiQsli~darIVIS--H 72 (161)
T COG5017 3 FVTVGST--FYPFNRLVLKIEVLELTELI-QEELIVQYGNGDIKP----V-AGLRVYGFDKEEKIQSLIHDARIVIS--H 72 (161)
T ss_pred EEEecCc--cchHHHHHhhHHHHHHHHHh-hhheeeeecCCCccc----c-cccEEEeechHHHHHHHhhcceEEEe--c
Confidence 5567764 3344433322 22222222 23343 367765432 1 23678888878999999999998774 3
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCCCCccceeee
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVD 424 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~ 424 (493)
-++| +++.++..++|.|......--.|++.+
T Consensus 73 aG~G---SIL~~~rl~kplIv~pr~s~y~elvDd 103 (161)
T COG5017 73 AGEG---SILLLLRLDKPLIVVPRSSQYQELVDD 103 (161)
T ss_pred cCcc---hHHHHhhcCCcEEEEECchhHHHhhhh
Confidence 3456 899999999999887654422244433
No 203
>PLN02206 UDP-glucuronate decarboxylase
Probab=89.99 E-value=3.1 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=25.8
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
.+.|||++. ||.+..=..|++.|.++|++|.++..
T Consensus 117 ~~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred cCCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEeC
Confidence 356898876 34444556689999999999998753
No 204
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=89.35 E-value=17 Score=33.23 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=40.1
Q ss_pred CcEEEecCCCHHHHHHHHHHc--CEEEe-CCCCCCCCChHHHHHHHcCCcEEecCCCCCc
Q 039338 362 HQVLVMGSMSPAELRAFYNAI--DIFVN-PTLRPQGLDLTLMEAMMSGKPVMASRFPSIK 418 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~a--dv~v~-ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~ 418 (493)
+-|...|+.+.+.=.+++++. |++|. -| ...|+.-++--|..+|+|||.-+-+..+
T Consensus 173 ~iia~~GPfs~e~n~al~~~~~i~~lVtK~S-G~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 173 NIIAMQGPFSKELNRALFRQYGIDVLVTKES-GGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred hEEEEeCCCCHHHHHHHHHHcCCCEEEEcCC-CchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 446677888877666777764 55554 22 2236778899999999999998876654
No 205
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=88.20 E-value=0.75 Score=37.68 Aligned_cols=37 Identities=32% Similarity=0.326 Sum_probs=28.6
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
|++++. ..+|.-.-...++++|.++||||.+.+....
T Consensus 1 Ili~~~------Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~ 37 (139)
T PF03033_consen 1 ILIATG------GTRGHVYPFLALARALRRRGHEVRLATPPDF 37 (139)
T ss_dssp EEEEEE------SSHHHHHHHHHHHHHHHHTT-EEEEEETGGG
T ss_pred CEEEEc------CChhHHHHHHHHHHHHhccCCeEEEeecccc
Confidence 556664 5578888889999999999999998886543
No 206
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=87.56 E-value=0.87 Score=39.87 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+..+. .. ...-+..|+++|++.||+|+|+++....
T Consensus 1 M~ILlTNDD-----Gi--~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDD-----GI--DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS------T--TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCC-----CC--CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 899999874 22 2335888999998888999999998766
No 207
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=86.63 E-value=5.2 Score=38.28 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=66.2
Q ss_pred hhhhhhCCC--CCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh--------------hc-
Q 039338 299 SFRSRIGIP--KNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD--------------FG- 361 (493)
Q Consensus 299 ~~r~~~~i~--~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~--------------l~- 361 (493)
.+.+++|++ .+. .++..++ -+.-.+..++++++... ..+++.|-.+ .....+.. .+
T Consensus 169 ~~~~~lg~~~~~~~-~~vSLF~--Ye~~al~~ll~~~~~~~---~pv~lLvp~G-r~~~~v~~~l~~~~~~~g~~~~~g~ 241 (371)
T TIGR03837 169 ALLRRLGVGPEPDA-LLVSLFC--YENAALPALLDALAQSG---SPVHLLVPEG-RALAAVAAWLGDALLAAGDVHRRGA 241 (371)
T ss_pred HHHHHcCCCCCCCC-eEEEEEe--cCChhHHHHHHHHHhCC---CCeEEEecCC-ccHHHHHHHhCccccCCccccccCc
Confidence 345567774 233 3332222 12344778888877543 3566666543 22222211 11
Q ss_pred CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
-.+.+++++++++...++-.||+-++ ++|- +.+=|..+|+|.|=--
T Consensus 242 L~~~~LPf~~Q~~yD~LLW~cD~NfV---RGED---SFVRAqWAgkPfvWhI 287 (371)
T TIGR03837 242 LTVAVLPFVPQDDYDRLLWACDLNFV---RGED---SFVRAQWAGKPFVWHI 287 (371)
T ss_pred eEEEEcCCCChhhHHHHHHhChhcEe---echh---HHHHHHHcCCCceeec
Confidence 46888999999999999999999776 6788 8999999999998543
No 208
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=86.37 E-value=1.8 Score=36.98 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCCchHHHHHHHHHHH--HhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVAL--ARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L--~~~G~~V~v~~~~~~~ 129 (493)
+.||+...+..|.+.+ ....++..+++..+..
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~ 39 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQ 39 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcc
Confidence 5599999999999999 2335677777766655
No 209
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.06 E-value=1.5 Score=33.51 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=30.8
Q ss_pred HHHHHHHHcCEEEeCCCCC--CCCChHHHHHHHcCCcEEecCCCCCc
Q 039338 374 ELRAFYNAIDIFVNPTLRP--QGLDLTLMEAMMSGKPVMASRFPSIK 418 (493)
Q Consensus 374 ~~~~~~~~adv~v~ps~~~--eg~~~~~~EAm~~G~PvI~s~~~~~~ 418 (493)
.+...+..||++|+++..- ...-.+--+|-..|+|++.++..+..
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4899999999999977320 11223345567789999999865544
No 210
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.98 E-value=1.7 Score=34.54 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred eEEEEEeccCCCCC-CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPIST-TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~-~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+|+.... .. ...+ .....|+.+..++||+|.++....-.
T Consensus 1 Mki~fvmDpi--~~i~~~k--DTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPI--ESIKPYK--DTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-G--GG--TTT---HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCH--HHCCCCC--ChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 8999999833 11 2222 24667888889999999999877644
No 211
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=83.81 E-value=4.2 Score=36.79 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=29.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+-.+. |=...-+..|+++|+ .++||+|+++..+.
T Consensus 1 mrILlTNDD-------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDD-------GIHAPGIRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCC-------ccCCHHHHHHHHHHh-hCCCEEEEccCCCC
Confidence 889988764 333344788999999 88999999998766
No 212
>PLN02778 3,5-epimerase/4-reductase
Probab=83.57 E-value=4.5 Score=38.23 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEE
Q 039338 79 PSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHI 122 (493)
Q Consensus 79 ~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v 122 (493)
+...+|||++.. |.+..=..|++.|.++||+|++
T Consensus 5 ~~~~~~kiLVtG----------~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 5 AGSATLKFLIYG----------KTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCCeEEEEC----------CCCHHHHHHHHHHHhCCCEEEE
Confidence 345579988773 3344455688999999999875
No 213
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.39 E-value=7.9 Score=31.70 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=44.6
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCc
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADK 160 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (493)
++++||++.+. ...+...-...++..|...|++|+.+....+.
T Consensus 1 ~~~~~vl~~~~------~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~------------------------------- 43 (137)
T PRK02261 1 MKKKTVVLGVI------GADCHAVGNKILDRALTEAGFEVINLGVMTSQ------------------------------- 43 (137)
T ss_pred CCCCEEEEEeC------CCChhHHHHHHHHHHHHHCCCEEEECCCCCCH-------------------------------
Confidence 35678888875 33445555667788899999999988766554
Q ss_pred cccccchHHHHHHhcCCCCcEEEeC
Q 039338 161 WRYSKGWEQFDEENQREPFDVVHSE 185 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~DiI~~~ 185 (493)
..+.+...+.+||+|-+.
T Consensus 44 -------e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 44 -------EEFIDAAIETDADAILVS 61 (137)
T ss_pred -------HHHHHHHHHcCCCEEEEc
Confidence 566666778899998765
No 214
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=81.35 E-value=9.8 Score=34.53 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=31.1
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.+..++|++|..+ |-+...|..+ ....+.++|++|.+++.....
T Consensus 7 ~~~~~~vL~v~aH-PDDe~~g~gg-----tla~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 7 MLDPLRVLVVFAH-PDDEEIGCGG-----TLAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred cccCCcEEEEecC-CcchhhccHH-----HHHHHHHCCCeEEEEEccCCc
Confidence 4557889999884 5544455444 334558899999999987766
No 215
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=81.23 E-value=9.6 Score=38.52 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC-cEEecCCCCCcc-ceeeeCcceEEECC-CHHHHHHHHHHHHHc-
Q 039338 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK-PVMASRFPSIKG-TIVVDDEFGFMFAP-NVESLHKTLEAAVSE- 448 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~-PvI~s~~~~~~~-e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~- 448 (493)
..+.+.++.+.+++.|.-. +...-.++||+..|| |||.++.--.+- +.+.-.+.+++++. ++..+ |.+.|..
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd-~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~---~~~iL~~i 410 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGD-TPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPEL---IKNILLSI 410 (464)
T ss_pred chHHHHhhcCeEEECCCCC-CcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhH---HHHHHHhc
Confidence 6888999999999999844 666779999999999 999998533332 33444566777764 44444 3333332
Q ss_pred CcHHHHHHHHHHHHHHHHhcC
Q 039338 449 GPMRLAQRGEACRQYAASMFT 469 (493)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~fs 469 (493)
+.++...|.++....+...|-
T Consensus 411 ~~~~~~~m~~~v~~~v~r~~~ 431 (464)
T KOG1021|consen 411 PEEEVLRMRENVIRLVPRHFL 431 (464)
T ss_pred CHHHHHHHHHHHHHHHHhhEE
Confidence 244556666666655555543
No 216
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=80.11 E-value=2.7 Score=35.85 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=28.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||++|... |-++ ..+++...++||+|+.++.....
T Consensus 1 mKIaiIgAs-------G~~G---s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGAS-------GKAG---SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecC-------chhH---HHHHHHHHhCCCeeEEEEeChHh
Confidence 899999863 3333 34778888999999999988766
No 217
>PRK06849 hypothetical protein; Provisional
Probab=79.63 E-value=2.3 Score=41.94 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=48.7
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
.+||||++.... .....+++.|.+.||+|+++...... .. .. ............. ..
T Consensus 3 ~~~~VLI~G~~~----------~~~l~iar~l~~~G~~Vi~~d~~~~~--~~--~~-------s~~~d~~~~~p~p--~~ 59 (389)
T PRK06849 3 TKKTVLITGARA----------PAALELARLFHNAGHTVILADSLKYP--LS--RF-------SRAVDGFYTIPSP--RW 59 (389)
T ss_pred CCCEEEEeCCCc----------HHHHHHHHHHHHCCCEEEEEeCCchH--HH--HH-------HHhhhheEEeCCC--CC
Confidence 468899886432 24788999999999999999776433 00 00 0011112221111 11
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCcc
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSESV 187 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~~ 187 (493)
........+.++++++++|+|+...-
T Consensus 60 d~~~~~~~L~~i~~~~~id~vIP~~e 85 (389)
T PRK06849 60 DPDAYIQALLSIVQRENIDLLIPTCE 85 (389)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCh
Confidence 12223466777778889999987653
No 218
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=78.10 E-value=6.5 Score=32.68 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=30.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
|||++|.... ...|-....+..+++.+.+.|+++.++.....
T Consensus 1 Mkilii~gS~---r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~ 42 (152)
T PF03358_consen 1 MKILIINGSP---RKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY 42 (152)
T ss_dssp -EEEEEESSS---STTSHHHHHHHHHHHHHHHTTEEEEEEECTTS
T ss_pred CEEEEEECcC---CCCCHHHHHHHHHHHHHHHcCCEEEEEecccc
Confidence 8999999852 13355555666778888888999999976543
No 219
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=76.89 E-value=6.6 Score=28.56 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=46.0
Q ss_pred HhhccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEecccc
Q 039338 248 RFFNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRLV 321 (493)
Q Consensus 248 ~~~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~~ 321 (493)
.+...+|.|++......+.+++ .| .++++.+|-++|+..+.+....... +.+ -. --|.|+|+.-
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~-~G--~~~V~yLPLAa~~~~~~p~~~~~~~-~~~---~~---~dIsFVG~~y 77 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN-LG--AENVFYLPLAANPERFRPIPVDPEE-RKK---YE---CDISFVGSLY 77 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH-cC--CCCEEEccccCCHHHhCcccCCccc-ccc---cC---CCEEEeCcCc
Confidence 4467899999999999999998 45 4689999999999999876542110 011 11 2377889864
No 220
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=76.23 E-value=4 Score=35.31 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=49.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCE--EEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHR--VHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~--V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
|||+++... + ......+.+++.+.+++ +..+.+..+. ...... ............... +
T Consensus 1 mrI~~~~Sg-------~--~~~~~~~l~~l~~~~~~~~iv~Vit~~~~--~~~~~~------~~~~~~~~~~~~~~~--~ 61 (181)
T PF00551_consen 1 MRIVFFGSG-------S--GSFLKALLEALKARGHNVEIVLVITNPDK--PRGRSR------AIKNGIPAQVADEKN--F 61 (181)
T ss_dssp EEEEEEESS-------S--SHHHHHHHHHHHTTSSEEEEEEEEESSTT--THHHHH------HHHTTHHEEEHHGGG--S
T ss_pred CEEEEEEcC-------C--CHHHHHHHHHHHhCCCCceEEEEeccccc--cccccc------cccCCCCEEeccccC--C
Confidence 899999741 1 24577788999999997 4433333333 110000 000111111111111 1
Q ss_pred cc-ccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 162 RY-SKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 162 ~~-~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
.. ...-..+.+.+++.+||++++.++. ++.-+....+.-++.+|.
T Consensus 62 ~~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHp 109 (181)
T PF00551_consen 62 QPRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHP 109 (181)
T ss_dssp SSHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEES
T ss_pred CchHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEee
Confidence 11 1122445666678899999887652 333333333334677775
No 221
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=75.18 E-value=48 Score=32.76 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=52.5
Q ss_pred HHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCCh---HHHH-HHHcCC
Q 039338 332 AFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDL---TLME-AMMSGK 407 (493)
Q Consensus 332 a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~---~~~E-Am~~G~ 407 (493)
+++.|..++ --+++|++... +..++++..+- ...++-+++.+++..+|+++..+. ..-+. ..+| ++.-..
T Consensus 193 va~~L~~~g-~~~i~IaNRT~--erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTs--a~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 193 VAKHLAEKG-VKKITIANRTL--ERAEELAKKLG-AEAVALEELLEALAEADVVISSTS--APHPIITREMVERALKIRK 266 (414)
T ss_pred HHHHHHhCC-CCEEEEEcCCH--HHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecC--CCccccCHHHHHHHHhccc
Confidence 334454443 24566776533 33333332221 334566899999999999998652 33333 3333 333334
Q ss_pred cEEecCCCCCccceeeeCc----ceEEECCCHHHHHHHHHH
Q 039338 408 PVMASRFPSIKGTIVVDDE----FGFMFAPNVESLHKTLEA 444 (493)
Q Consensus 408 PvI~s~~~~~~~e~v~~~~----~G~~~~~d~~~l~~~i~~ 444 (493)
..+..|.+--+ + +..+. +-+++ |.++|....++
T Consensus 267 ~~livDiavPR-d-ie~~v~~l~~v~l~--~iDDL~~iv~~ 303 (414)
T COG0373 267 RLLIVDIAVPR-D-VEPEVGELPNVFLY--TIDDLEEIVEE 303 (414)
T ss_pred CeEEEEecCCC-C-CCccccCcCCeEEE--ehhhHHHHHHH
Confidence 45666764433 3 33322 22444 45555554443
No 222
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=74.29 E-value=7.2 Score=31.49 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=31.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCE-EEEEecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHR-VHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~-V~v~~~~~~ 128 (493)
||++++...-| ..+-..+....+++++.+.||+ +.|+-..+.
T Consensus 1 m~~~iv~~~~P---y~~~~~~~al~~A~aa~~~gh~v~~vFf~~Dg 43 (128)
T PRK00207 1 MRYAIAVTGPA---YGTQQASSAYQFAQALLAEGHELVSVFFYQDG 43 (128)
T ss_pred CEEEEEEcCCC---CCCHHHHHHHHHHHHHHhCCCCeeEEEEehHH
Confidence 88999888633 4455567789999999999998 477765543
No 223
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=73.92 E-value=14 Score=32.17 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=52.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCC--EEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGH--RVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~--~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
|||+++.. |.+..+..+.+++.+.+. +|.++.+.... ....+.. ...+.+.... .. ...
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~--~~~~~~A-----~~~gip~~~~-~~--~~~ 61 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNKPD--AYGLERA-----AQAGIPTFVL-SL--KDF 61 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECCcc--chHHHHH-----HHcCCCEEEE-Cc--ccc
Confidence 68999884 223457788888888765 66655444332 1111110 0112222211 11 111
Q ss_pred c-cccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 162 R-YSKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
. ....-..+.+.+++.++|++++.++. ++..+....+.-++.+|.
T Consensus 62 ~~~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHp 109 (190)
T TIGR00639 62 PSREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHP 109 (190)
T ss_pred CchhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeC
Confidence 1 11112355666778899999887642 222222333335777785
No 224
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=73.65 E-value=6.5 Score=31.76 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=27.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
|||++... ..++ ...+..+.+.|.+.|++|.++.+...
T Consensus 1 k~i~l~vt------Gs~~-~~~~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVT------GSIA-AYKAPDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-------SSGG-GGGHHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEE------CHHH-HHHHHHHHHHHhhCCCEEEEEECCcH
Confidence 67888775 2233 33489999999999999999887543
No 225
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=73.60 E-value=72 Score=29.02 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=53.8
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc----CcEEEecCCCHHHHHHHHHH--cCEE
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG----HQVLVMGSMSPAELRAFYNA--IDIF 385 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~----~~V~~~g~~~~~~~~~~~~~--adv~ 385 (493)
-+|+..|+ |++..+ ....+. ..+-+.++-.........+++ .-|-..|+.+.+.=..++.+ +|++
T Consensus 130 rVflt~G~----~~l~~f----~~~~~~-~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~v 200 (257)
T COG2099 130 RVFLTTGR----QNLAHF----VAADAH-SHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVV 200 (257)
T ss_pred cEEEecCc----cchHHH----hcCccc-ceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHhCCCEE
Confidence 46777776 444333 333221 123333433333333444444 33456688877666677766 5556
Q ss_pred EeCCCCCC-CCChHHHHHHHcCCcEEecCCC
Q 039338 386 VNPTLRPQ-GLDLTLMEAMMSGKPVMASRFP 415 (493)
Q Consensus 386 v~ps~~~e-g~~~~~~EAm~~G~PvI~s~~~ 415 (493)
|.=-.... |+--++--|...|+|||.-.-+
T Consensus 201 ItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 201 VTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred EEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 64211223 5556888999999999988765
No 226
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.25 E-value=34 Score=31.94 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccC-CCCCC-CCCCceEeecCC--CCccccccchHHHHHH
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQEN-DDGSN-NKYPLLHFHEGE--ADKWRYSKGWEQFDEE 173 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 173 (493)
...|-++.+-.|.+.|.++||.|-|+..++.. ........-+ +.-.. ...+.+++.... ...-............
T Consensus 60 PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ 138 (323)
T COG1703 60 PGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKL 138 (323)
T ss_pred CCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHH
Confidence 34677888999999999999999999987766 1211221111 00000 112222222211 1122344455666667
Q ss_pred hcCCCCcEEEeCccc
Q 039338 174 NQREPFDVVHSESVA 188 (493)
Q Consensus 174 ~~~~~~DiI~~~~~~ 188 (493)
++...+|+|++.+.+
T Consensus 139 ldAaG~DvIIVETVG 153 (323)
T COG1703 139 LDAAGYDVIIVETVG 153 (323)
T ss_pred HHhcCCCEEEEEecC
Confidence 778899999998763
No 227
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=73.11 E-value=6.1 Score=36.12 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=30.4
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.++||||+.... |=...-+..|+++|.+.| +|+|+++..+.
T Consensus 3 ~~~M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 3 DKKPHILVCNDD-------GIEGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCCEEEEECCC-------CCCCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 457999988763 212234788999999888 89999987765
No 228
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=72.95 E-value=6.9 Score=32.45 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||+|++-. ...|-...-+..++..|.+.|++|++.-.....
T Consensus 1 Mk~LIlYs-----tr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~ 41 (175)
T COG4635 1 MKTLILYS-----TRDGQTRKIAEYIASHLRESGIQVDIQDLHAVE 41 (175)
T ss_pred CceEEEEe-----cCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhh
Confidence 78888754 266777778888999999999999997655433
No 229
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=72.00 E-value=41 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=33.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
|+|+-|+.. ..+|=.+.+..+++.|.++|+.|-++=-...
T Consensus 2 ~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 677777752 7788899999999999999999998865444
No 230
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=71.62 E-value=34 Score=27.61 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=58.1
Q ss_pred cEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceee--eCcceEEECC----CHH
Q 039338 363 QVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVV--DDEFGFMFAP----NVE 436 (493)
Q Consensus 363 ~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~--~~~~G~~~~~----d~~ 436 (493)
.|.+....+.+++.+.+..+|+++..+ . ..+.-.+++++ -++-.|++...|.. .+-. -.+.|+.+.. ..+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~-~-~~~~~~~l~~~-~~Lk~I~~~~~G~d-~id~~~a~~~gI~V~n~~g~~~~ 95 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGS-G-TPLTAEVLEAA-PNLKLISTAGAGVD-NIDLEAAKERGIPVTNVPGYNAE 95 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEEST-T-STBSHHHHHHH-TT-SEEEESSSSCT-TB-HHHHHHTTSEEEE-TTTTHH
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcC-C-CCcCHHHHhcc-ceeEEEEEcccccC-cccHHHHhhCeEEEEEeCCcCCc
Confidence 788888888899999999999999755 1 24778889888 88888888777764 3211 1345555543 344
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHH
Q 039338 437 SLHKTLEAAVSEGPMRLAQRGEACRQ 462 (493)
Q Consensus 437 ~l~~~i~~ll~~~~~~~~~~~~~~~~ 462 (493)
+.++.. ....+.+.++.+.+.+
T Consensus 96 aVAE~a----~~T~e~~~~~~~~~~~ 117 (133)
T PF00389_consen 96 AVAEHA----GYTDEARERMAEIAAE 117 (133)
T ss_dssp HHHHHH----TGBHHHHHHHHHHHHH
T ss_pred chhccc----hhHHHHHHHHHHHHHH
Confidence 444443 3224444444444433
No 231
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=71.41 E-value=59 Score=30.54 Aligned_cols=95 Identities=19% Similarity=0.067 Sum_probs=58.9
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCC--
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTL-- 390 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~-- 390 (493)
+++|.|. ..-|=+.+++++- .+..++.+++++...+..... . .+|.-....+..++...+..+|++|...-
T Consensus 3 l~GyyG~--~N~GDe~~l~~~l--~~l~~~~~~~v~s~~p~~~~~-~--~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l 75 (298)
T TIGR03609 3 LCGYYGF--GNLGDEALLAALL--RELPPGVEPTVLSNDPAETAK-L--YGVEAVNRRSLLAVLRALRRADVVIWGGGSL 75 (298)
T ss_pred EEEecCC--CCcchHHHHHHHH--HhcCCCCeEEEecCChHHHHh-h--cCceEEccCCHHHHHHHHHHCCEEEECCccc
Confidence 4555553 3467788888873 333467888888765543321 1 25566666677789999999999997531
Q ss_pred CCCCCCh--------HHHHHHHcCCcEEecCC
Q 039338 391 RPQGLDL--------TLMEAMMSGKPVMASRF 414 (493)
Q Consensus 391 ~~eg~~~--------~~~EAm~~G~PvI~s~~ 414 (493)
..+..+. ...-|..+|+|++....
T Consensus 76 ~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 76 LQDVTSFRSLLYYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred ccCCcccccHHHHHHHHHHHHHcCCCEEEEec
Confidence 1111111 23446678999988654
No 232
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=71.15 E-value=12 Score=34.73 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||++.---..+.+|.+.||+|+|+-.-...
T Consensus 7 GGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g 36 (329)
T COG1087 7 GGAGYIGSHTVRQLLKTGHEVVVLDNLSNG 36 (329)
T ss_pred cCcchhHHHHHHHHHHCCCeEEEEecCCCC
Confidence 555555566788999999999998754433
No 233
>PRK04155 chaperone protein HchA; Provisional
Probab=71.12 E-value=30 Score=32.44 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=29.6
Q ss_pred eEEEEEeccCCCCC-------CCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 84 LKIAVFSRKWPIST-------TPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~-------~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
+|||+|....-... ..|=...-+..-...|.+.|++|++++....
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~ 101 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGN 101 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 48999988542111 1222233355567889999999999998653
No 234
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.94 E-value=8.7 Score=35.58 Aligned_cols=196 Identities=11% Similarity=0.123 Sum_probs=103.1
Q ss_pred hccCCeEEEcChhHHHHHHHHhCCCCCcEEEecCCccCCCccCCcccchhhhhhhCCCCCCcEEEEEeccc--ccccChH
Q 039338 250 FNKYAHHVAISDSCGEMLRDVYQIPSERVHVILNGINENEYGVDLSLGQSFRSRIGIPKNASLVLGVAGRL--VKDKGHP 327 (493)
Q Consensus 250 ~~~~d~ii~~S~~~~~~~~~~~~~~~~~v~vi~ngvd~~~~~~~~~~~~~~r~~~~i~~~~~~~i~~~Gr~--~~~Kg~~ 327 (493)
-++|-.++.-.....+.+.+ .|++ ...+.|+.-. -..+...+...+ .+ ..+.+-+.-|+- +.+.++.
T Consensus 176 ~rrc~~vf~rD~~Taq~L~~-rgvn---a~~vGnpmmD-~L~p~~~~~q~l-----~~-g~~viaLLPGsR~pea~~nl~ 244 (412)
T COG4370 176 RRRCWAVFPRDALTAQHLAN-RGVN---AAYVGNPMMD-GLPPPERDPQLL-----LT-GVPVIALLPGSRVPEAQTNLA 244 (412)
T ss_pred cccceeeeccccccHHHHHh-cCCc---hhhccChhhc-cCCCccCCchhh-----cc-CCceEEecCCCCChHHHhhHH
Confidence 35677788877788888877 3653 3334443211 111111111100 11 222333344543 3467888
Q ss_pred HHHHHHHHHHhhCCCeEEEEEeC---C-C------------cHHHHhhhc-CcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 328 LLHEAFSKLMVKYPDVYLIVAGS---G-P------------WEQRYKDFG-HQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 328 ~ll~a~~~l~~~~~~~~l~i~G~---g-~------------~~~~~~~l~-~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
.++.++..+......+ ++.+. + + +......++ ++..+. .++....+.+..+|+.+-
T Consensus 245 ~il~slcal~~~~a~v--vfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l~--lsqqsfadiLH~adaalg--- 317 (412)
T COG4370 245 VILGSLCALPAMFALV--VFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSLW--LSQQSFADILHAADAALG--- 317 (412)
T ss_pred HHHHHHhhhHHHHHHH--HHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceEEE--EeHHHHHHHHHHHHHHHH---
Confidence 8888777665543321 22221 1 1 000000111 344433 356889999999999662
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCCC------Cccc-eeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFPS------IKGT-IVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQY 463 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~~------~~~e-~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 463 (493)
.-|+..=.+...|+|||....-| +.+. .-.-+..-.++.+..+.-..+..+++.| ++.....+.+++++
T Consensus 318 ---mAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~d-p~r~~air~nGqrR 393 (412)
T COG4370 318 ---MAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGD-PQRLTAIRHNGQRR 393 (412)
T ss_pred ---hccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcC-hHHHHHHHhcchhh
Confidence 23556777899999999987433 1100 0000222233333444444444448888 89998888888888
Q ss_pred HHHh
Q 039338 464 AASM 467 (493)
Q Consensus 464 ~~~~ 467 (493)
+-+-
T Consensus 394 iGqa 397 (412)
T COG4370 394 IGQA 397 (412)
T ss_pred ccCc
Confidence 7553
No 235
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.83 E-value=7.6 Score=36.99 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.3
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
++..|||+++.. |+++.. ++..|++.||+|+++....
T Consensus 2 ~~~~m~I~IiG~--------GaiG~~---lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGT--------GAIGGF---YGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECC--------CHHHHH---HHHHHHHCCCeEEEEEeCC
Confidence 456799999954 666654 6778888999999998653
No 236
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=70.71 E-value=14 Score=32.49 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=35.4
Q ss_pred hCCCCCCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC
Q 039338 304 IGIPKNASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP 352 (493)
Q Consensus 304 ~~i~~~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~ 352 (493)
-|++.+....|.+.|........+.+++.+.++.++..+.++++.|..+
T Consensus 130 ~gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~rl~P~~ilvyG~~~ 178 (200)
T PF14386_consen 130 DGIPKGSIVAISTNGCINNKEDKKLFLDGLREMLKRLRPKHILVYGGMP 178 (200)
T ss_pred hhcccCCEEEEEEecccCCHHHHHHHHHHHHHHHhccCCCeEEEECCch
Confidence 4667777556666675555555778888888888877788899999544
No 237
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=70.52 E-value=13 Score=32.64 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=50.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
|||++++. |.+..+..+.+++.+.+ ++|.++.+.... ....+.. ...+.+...+......
T Consensus 2 ~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~--~~~~~~a-----~~~gIp~~~~~~~~~~-- 63 (200)
T PRK05647 2 KRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISDRPD--AYGLERA-----EAAGIPTFVLDHKDFP-- 63 (200)
T ss_pred ceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEecCcc--chHHHHH-----HHcCCCEEEECccccC--
Confidence 78999985 22345778888888764 666665444332 1111110 1112222221111100
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCcc--chhHHhhhccCcEEEEecc
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSESV--ALPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~~--~~~~~~~~~~p~~v~~~h~ 206 (493)
.....-..+.+.++..+||++++.++ -++.-+....+.-++.+|.
T Consensus 64 ~~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHp 110 (200)
T PRK05647 64 SREAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHP 110 (200)
T ss_pred chhHhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeC
Confidence 00011134455566779999988654 2222222222335677775
No 238
>PRK09271 flavodoxin; Provisional
Probab=70.36 E-value=12 Score=31.57 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+++-. +..|-.+..+..+++.|.+.|++|.+....
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~ 38 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVETD 38 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEecc
Confidence 78888865 366888888999999999999999876543
No 239
>PLN00016 RNA-binding protein; Provisional
Probab=70.14 E-value=5.8 Score=38.94 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=31.0
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
.+.|||++++. ..||.+..-..+++.|.++||+|++++....
T Consensus 50 ~~~~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 50 VEKKKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cccceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 34578988855 3355555666799999999999999987643
No 240
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=69.85 E-value=7.6 Score=36.45 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=23.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+++.. .+..-..+.+.|.++|++|..++..
T Consensus 1 MriLI~Ga----------sG~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 1 MRILITGA----------SGFLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp EEEEEETT----------TSHHHHHHHHHHTTTSEEEEEESTT
T ss_pred CEEEEECC----------CCHHHHHHHHHHhhCCCEEEEeCch
Confidence 89999953 2334456889999999888777433
No 241
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=68.67 E-value=55 Score=29.81 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=40.3
Q ss_pred hcCcEEEecC--CCHHHHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCC
Q 039338 360 FGHQVLVMGS--MSPAELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPS 416 (493)
Q Consensus 360 l~~~V~~~g~--~~~~~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~ 416 (493)
+.++|.+.|. ++.+++.+.+..+|++|. +|..-.+...-+.+|-..|.++|.-+...
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 3478888887 366778888999999877 44332333334566888999988877654
No 242
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=67.39 E-value=51 Score=26.19 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=29.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC-CEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRG-HRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~ 129 (493)
||+.|+... ||+ ..-....+..+++++.++| ++|.+|...+.-
T Consensus 1 m~~~Ivvt~-ppY--g~q~a~~A~~fA~all~~gh~~v~iFly~DgV 44 (126)
T COG1553 1 MKYTIVVTG-PPY--GTESAFSALRFAEALLEQGHELVRLFLYQDGV 44 (126)
T ss_pred CeEEEEEec-CCC--ccHHHHHHHHHHHHHHHcCCeEEEEEEeeccc
Confidence 677777765 332 2234556889999999996 678888776544
No 243
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=66.98 E-value=3.6 Score=33.05 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCC
Q 039338 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
+++.+++..+|++|.-| .++..--.+-.++.+|+|+|+--.|..
T Consensus 59 ~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 57888888899999877 345655567778889999998655443
No 244
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=66.87 E-value=25 Score=33.49 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=23.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||+|+... .+.....++|.+.||+|..+.+..
T Consensus 1 mkIvf~Gs~-----------~~a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTP-----------TFSLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCC-----------HHHHHHHHHHHhCCCcEEEEEcCC
Confidence 789998651 145667788888899987655543
No 245
>PRK13761 hypothetical protein; Provisional
Probab=66.21 E-value=72 Score=28.31 Aligned_cols=92 Identities=13% Similarity=0.133 Sum_probs=54.8
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHH-HcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAM-MSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGE 458 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm-~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~ 458 (493)
-.||++++|-- +| ==.||+ .+|+-||+-|...+.. . ....-+. =++.+..++-.+... ...++.+.+
T Consensus 149 y~ADVVLVPLE--DG---DR~EaL~~mGK~VI~IDLNPLSR-T--ar~A~it---IVDni~RA~p~m~~~-~~elk~~~~ 216 (248)
T PRK13761 149 YSADVVLVPLE--DG---DRTEALVKMGKTVIAIDLNPLSR-T--ARTATIT---IVDNITRAVPNMTEY-ARELKKKDR 216 (248)
T ss_pred eeccEEEecCC--CC---cHHHHHHHcCCeEEEEeCCCccc-c--cccCcee---eehhHHHHHHHHHHH-HHHHhcCCH
Confidence 46899999982 45 334554 5899999999877763 1 1111111 125667776666555 444444444
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Q 039338 459 ACRQYAASMFTANKMALAYERLFLC 483 (493)
Q Consensus 459 ~~~~~~~~~fs~~~~~~~~~~~~~~ 483 (493)
...+.+.+.|+-++....-.+.+.+
T Consensus 217 ~el~~iv~~~dN~~~L~~al~~I~~ 241 (248)
T PRK13761 217 EELEEIVENYDNKKNLSEALKEIRE 241 (248)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4445555568877776665555444
No 246
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=65.96 E-value=56 Score=29.82 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=49.6
Q ss_pred hcCcEEEecC-CCH---HHHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC
Q 039338 360 FGHQVLVMGS-MSP---AELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP 433 (493)
Q Consensus 360 l~~~V~~~g~-~~~---~~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~ 433 (493)
+.++|.+.|. +|. ++..+....||++|. +|...++...-+..|...|.|+|.-+.+... .+....+++..
T Consensus 153 lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~----~d~~~~~~i~~ 228 (244)
T PRK14138 153 IRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETP----LDDIATLKYNM 228 (244)
T ss_pred ECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCC----CCcceeEEEeC
Confidence 4478888886 454 446677889999887 4433233333334677789999888765433 22334556665
Q ss_pred CHHHHHHHHHH
Q 039338 434 NVESLHKTLEA 444 (493)
Q Consensus 434 d~~~l~~~i~~ 444 (493)
+..+....|.+
T Consensus 229 ~~~~~l~~l~~ 239 (244)
T PRK14138 229 DVVEFANRVMS 239 (244)
T ss_pred CHHHHHHHHHH
Confidence 66665555544
No 247
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=65.73 E-value=59 Score=29.89 Aligned_cols=92 Identities=5% Similarity=0.000 Sum_probs=63.2
Q ss_pred CCCCChHHHHHHHcCCcEEecCCCCCc--cceeeeCcceEEECCCH--HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 392 PQGLDLTLMEAMMSGKPVMASRFPSIK--GTIVVDDEFGFMFAPNV--ESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 392 ~eg~~~~~~EAm~~G~PvI~s~~~~~~--~e~v~~~~~G~~~~~d~--~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
+-+++..+-=-|+|+-.|+.....-.. .+.+.....=+-+..|- ++|.++|+-+.++ ++..+++++++++++++.
T Consensus 154 G~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~-~~~a~~Ia~~~~~~~~~~ 232 (256)
T smart00672 154 GVAWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEH-DKKAQEIGKRGSEFIQQN 232 (256)
T ss_pred CccchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence 344555666678888888876532110 02233333323333333 4499999999888 899999999999999998
Q ss_pred cCHHHHHHHHHHHHHHH
Q 039338 468 FTANKMALAYERLFLCI 484 (493)
Q Consensus 468 fs~~~~~~~~~~~~~~i 484 (493)
.+.+.+..-+..++.+-
T Consensus 233 L~~~~~~~Y~~~ll~ey 249 (256)
T smart00672 233 LSMEDVYDYMFHLLQEY 249 (256)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999888888877664
No 248
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=64.74 E-value=78 Score=27.86 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=57.4
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcH-HHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCC
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWE-QRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTL 390 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~-~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~ 390 (493)
-+++|+|+-...- -..|++..+++++..-.+.++.+|..... +.+.++-+-+...| ..++++.+|.
T Consensus 109 riVvFvGSpi~e~-ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~-----------~gshlv~Vpp- 175 (259)
T KOG2884|consen 109 RIVVFVGSPIEES-EKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKG-----------DGSHLVSVPP- 175 (259)
T ss_pred EEEEEecCcchhh-HHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCC-----------CCceEEEeCC-
Confidence 4566888754311 12677777788776556667777753322 22221111111111 1134555554
Q ss_pred CCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEE----ECC-CHHHHHHHHHHHHHc
Q 039338 391 RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFM----FAP-NVESLHKTLEAAVSE 448 (493)
Q Consensus 391 ~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~----~~~-d~~~l~~~i~~ll~~ 448 (493)
| .+++-...-.|++.-+.|+... .-+.+|-. +++ +.-+|+.+|+--++.
T Consensus 176 ---g---~~L~d~l~ssPii~ge~g~a~~---~~~a~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 176 ---G---PLLSDALLSSPIIQGEDGGAAA---GLGANGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred ---C---ccHHHHhhcCceeccCcccccc---cccccccccccCCCcccCHHHHHHHHhhHHH
Confidence 1 1444445567888876544432 12233332 334 445788888755543
No 249
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=64.29 E-value=16 Score=34.45 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=31.2
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
+++|||++++....+ ...-.-.....+.++|.+.||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~--~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSA--EREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCC--CceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 456799999975432 33322334588999999999999998643
No 250
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.87 E-value=28 Score=27.40 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCEEEEEec
Q 039338 105 HAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 105 ~~~~l~~~L~~~G~~V~v~~~ 125 (493)
-+..++..|.+.||+|.++-.
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECC
Confidence 377789999999999998744
No 251
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=63.48 E-value=41 Score=29.62 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=47.6
Q ss_pred HHHHHHHH--HcCEEEeCCCCCCCCChHHHHHHH-----cCCcEEecCC--CCCccceeeeCcceEEECC-CHHHHHHHH
Q 039338 373 AELRAFYN--AIDIFVNPTLRPQGLDLTLMEAMM-----SGKPVMASRF--PSIKGTIVVDDEFGFMFAP-NVESLHKTL 442 (493)
Q Consensus 373 ~~~~~~~~--~adv~v~ps~~~eg~~~~~~EAm~-----~G~PvI~s~~--~~~~~e~v~~~~~G~~~~~-d~~~l~~~i 442 (493)
++...++. +.|++++--.-+.+-|+.++..+. +.+-+|+... ..+. +.+..|...+++.| .-+-|.+++
T Consensus 36 ~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~-~alr~Gv~DYLiKPf~~eRl~~aL 114 (224)
T COG4565 36 EEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIK-EALRYGVVDYLIKPFTFERLQQAL 114 (224)
T ss_pred HHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHH-HHHhcCchhheecceeHHHHHHHH
Confidence 44445554 557776654445677888887777 4444554432 2222 44555777888888 889999888
Q ss_pred HHHHHc
Q 039338 443 EAAVSE 448 (493)
Q Consensus 443 ~~ll~~ 448 (493)
.+....
T Consensus 115 ~~y~~~ 120 (224)
T COG4565 115 TRYRQK 120 (224)
T ss_pred HHHHHH
Confidence 887654
No 252
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=62.88 E-value=28 Score=31.34 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+.|+.. ...|-.+.+..|++.|.++|+.|-++-..
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 777777752 56788888999999999999999999543
No 253
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=62.79 E-value=89 Score=31.09 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=39.2
Q ss_pred EEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCC
Q 039338 344 YLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPS 416 (493)
Q Consensus 344 ~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~ 416 (493)
.+.|++.... ..+++...+.-...++.+++.+.+..+|+++..+. .+-++.-. .+.-+.|.+.-|.+-
T Consensus 207 ~I~V~nRt~~--ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~--a~~~vi~~-~~~~~~~~~~iDLav 274 (414)
T PRK13940 207 QIMLANRTIE--KAQKITSAFRNASAHYLSELPQLIKKADIIIAAVN--VLEYIVTC-KYVGDKPRVFIDISI 274 (414)
T ss_pred EEEEECCCHH--HHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcC--CCCeeECH-HHhCCCCeEEEEeCC
Confidence 6778776432 22333321100012344788999999999999773 23332223 344578888888743
No 254
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=62.76 E-value=53 Score=29.62 Aligned_cols=81 Identities=25% Similarity=0.473 Sum_probs=59.8
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeC-------CCcHHHHhh---hcCcEEEecCC--CHHHHHHHHH
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGS-------GPWEQRYKD---FGHQVLVMGSM--SPAELRAFYN 380 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-------g~~~~~~~~---l~~~V~~~g~~--~~~~~~~~~~ 380 (493)
.++++|-+.-.-|...+-+-+..++.++ .+.|+|++. |--++.+++ .+-+|.-+|.- ++.|+.+++.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~ 80 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID 80 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhh
Confidence 4678999888889999999999998876 467788753 333444444 44666666654 6789999999
Q ss_pred HcCEEEeCCCCCCC
Q 039338 381 AIDIFVNPTLRPQG 394 (493)
Q Consensus 381 ~adv~v~ps~~~eg 394 (493)
..+.+|=|...+++
T Consensus 81 ~~~~ilRP~N~p~~ 94 (266)
T COG1692 81 NADRILRPANYPDG 94 (266)
T ss_pred cccceeccCCCCCC
Confidence 99999988755444
No 255
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=62.71 E-value=12 Score=33.42 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=24.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||++| ||.+..-..++..|.+.||+|.++...
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 788888 333344556889999999999887543
No 256
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.37 E-value=99 Score=27.11 Aligned_cols=89 Identities=12% Similarity=0.201 Sum_probs=49.0
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHH-HcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHH-H
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAM-MSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQR-G 457 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm-~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~-~ 457 (493)
-.||++++|-- +| -=.||+ -+|+-||+-|...+.. .....-+.+ ++.+..++-+++.. ..+.+.. .
T Consensus 152 y~ADVVLvpLE--DG---DRteaLv~mGK~ViaIDLNPLSR---Tar~AsItI---VDnivRA~p~li~~-~~em~~~~r 219 (256)
T COG1701 152 YSADVVLVPLE--DG---DRTEALVRMGKTVIAIDLNPLSR---TARKASITI---VDNIVRAVPNLIEF-VKEMKNASR 219 (256)
T ss_pred eeccEEEEecC--CC---cHHHHHHHhCCeEEEEeCCcccc---ccccCceee---eHHHHHHHHHHHHH-HHHHhccCH
Confidence 46899999982 44 234554 5899999999877763 112222222 36777777777665 3222222 2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 039338 458 EACRQYAASMFTANKMALAYERLF 481 (493)
Q Consensus 458 ~~~~~~~~~~fs~~~~~~~~~~~~ 481 (493)
+...+.+ ..|+-..+.......+
T Consensus 220 eel~~iv-~~ydN~~~l~eal~~I 242 (256)
T COG1701 220 EELEEIV-ENYDNKEVLAEALKHI 242 (256)
T ss_pred HHHHHHH-HhhccHHHHHHHHHHH
Confidence 2333333 3366555544443333
No 257
>PRK09004 FMN-binding protein MioC; Provisional
Probab=62.17 E-value=42 Score=27.73 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.9
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
..|-.+..+..+++.+.+.|++|.++.
T Consensus 11 ~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 678889999999999999999999864
No 258
>PRK06756 flavodoxin; Provisional
Probab=62.12 E-value=17 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=30.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
|||+++-. +..|..+..+..+++.|.+.|++|.++..
T Consensus 2 mkv~IiY~-----S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFA-----SMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEE-----CCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 67887764 26688888899999999999999987754
No 259
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=61.97 E-value=36 Score=34.83 Aligned_cols=81 Identities=11% Similarity=0.181 Sum_probs=42.7
Q ss_pred ccChHHHHHHHHHHHhhCCCeE-EEEEeCCC--cHHHH----hhhc----CcEEEecC-----C-CHHHHHHHHHHcCEE
Q 039338 323 DKGHPLLHEAFSKLMVKYPDVY-LIVAGSGP--WEQRY----KDFG----HQVLVMGS-----M-SPAELRAFYNAIDIF 385 (493)
Q Consensus 323 ~Kg~~~ll~a~~~l~~~~~~~~-l~i~G~g~--~~~~~----~~l~----~~V~~~g~-----~-~~~~~~~~~~~adv~ 385 (493)
.+..+.+++-++.+.+++ ++. +.++++.. ..+.. +++. .++.+... + .++++.++|++|-+.
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~-gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~ 299 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTH-GVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLV 299 (497)
T ss_pred cCCHHHHHHHHHHHHHHc-CCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCc
Confidence 467788888888876654 344 44444321 22222 2221 23444322 1 146788888887653
Q ss_pred -EeCCCCCCCCChHHHHHHHcC
Q 039338 386 -VNPTLRPQGLDLTLMEAMMSG 406 (493)
Q Consensus 386 -v~ps~~~eg~~~~~~EAm~~G 406 (493)
|.-. -|+..-.++++|--|
T Consensus 300 ~v~iG--iES~~~~~L~~~~K~ 319 (497)
T TIGR02026 300 HISLG--TEAAAQATLDHFRKG 319 (497)
T ss_pred EEEEc--cccCCHHHHHHhcCC
Confidence 2222 366666677766444
No 260
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=61.44 E-value=38 Score=34.78 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=54.9
Q ss_pred cEEEecCCCHHHHHHHHHHcCEEEeCCC--CCCCCChHHHHHHHcC---CcEEecCCCCCccceeeeCcceEEECC---C
Q 039338 363 QVLVMGSMSPAELRAFYNAIDIFVNPTL--RPQGLDLTLMEAMMSG---KPVMASRFPSIKGTIVVDDEFGFMFAP---N 434 (493)
Q Consensus 363 ~V~~~g~~~~~~~~~~~~~adv~v~ps~--~~eg~~~~~~EAm~~G---~PvI~s~~~~~~~e~v~~~~~G~~~~~---d 434 (493)
+..|.-+++.+-+.++-...+++|.-.- -..|||..++|+++.- +||+.. |++++++.++...-+... |
T Consensus 534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~l---glpd~fi~hg~~~el~~~~gLd 610 (627)
T COG1154 534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGILVPVLNL---GLPDEFIDHGSPEELLAELGLD 610 (627)
T ss_pred cCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCCCceEEe---cCChHhhccCCHHHHHHHcCCC
Confidence 4567888887779999999999886321 1368999999998754 455544 455566666644333332 6
Q ss_pred HHHHHHHHHHHHHc
Q 039338 435 VESLHKTLEAAVSE 448 (493)
Q Consensus 435 ~~~l~~~i~~ll~~ 448 (493)
.+.+++.|.+++..
T Consensus 611 ~~~i~~~i~~~l~~ 624 (627)
T COG1154 611 AEGIARRILEWLKA 624 (627)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666666543
No 261
>PRK09739 hypothetical protein; Provisional
Probab=60.60 E-value=25 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=30.6
Q ss_pred ceEEEEEeccCCCCCCCCc-hHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGG-MERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG-~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.|||++|..+ | ..+| ....+..+++.+.+.|++|+++......
T Consensus 3 mmkiliI~~s-p---~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~ 46 (199)
T PRK09739 3 SMRIYLVWAH-P---RHDSLTAKVAEAIHQRAQERGHQVEELDLYRSG 46 (199)
T ss_pred CceEEEEEcC-C---CCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhC
Confidence 5899999885 3 3344 3445666788888899999998765433
No 262
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=60.36 E-value=43 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..-|-...+.+|+..|++.|+.|.++-.+...
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 44455666889999999999999999876544
No 263
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=60.19 E-value=1.3e+02 Score=26.99 Aligned_cols=128 Identities=10% Similarity=0.049 Sum_probs=69.1
Q ss_pred HHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc--CcEEEecC-CCHHHHHHHHHHcCEEEeCCCCCCCCChHH-HHHHHc
Q 039338 330 HEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG--HQVLVMGS-MSPAELRAFYNAIDIFVNPTLRPQGLDLTL-MEAMMS 405 (493)
Q Consensus 330 l~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~--~~V~~~g~-~~~~~~~~~~~~adv~v~ps~~~eg~~~~~-~EAm~~ 405 (493)
.+-+..|.+. +.++.|+...-. +.++++. .+|.+... ...+ .+..+++++..+-. +...-.+ -+|-..
T Consensus 38 ~RK~~~Ll~~--gA~VtVVap~i~-~el~~l~~~~~i~~~~r~~~~~----dl~g~~LViaATdD-~~vN~~I~~~a~~~ 109 (223)
T PRK05562 38 FIKGKTFLKK--GCYVYILSKKFS-KEFLDLKKYGNLKLIKGNYDKE----FIKDKHLIVIATDD-EKLNNKIRKHCDRL 109 (223)
T ss_pred HHHHHHHHhC--CCEEEEEcCCCC-HHHHHHHhCCCEEEEeCCCChH----HhCCCcEEEECCCC-HHHHHHHHHHHHHc
Confidence 3334444443 457777775332 3333333 45655542 2223 34678888877633 3333333 445566
Q ss_pred CCcEEecCCCCCccce-----eeeCcceEEEC-----C-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 406 GKPVMASRFPSIKGTI-----VVDDEFGFMFA-----P-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 406 G~PvI~s~~~~~~~e~-----v~~~~~G~~~~-----~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
|.+|.+.+.+... +. +..+..-+-+. | =...+.+.|++++.+ -+.+.+.....|+.+++.
T Consensus 110 ~~lvn~vd~p~~~-dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~-~~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 110 YKLYIDCSDYKKG-LCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKK-YDDFIEYVTKIRNKAKKN 180 (223)
T ss_pred CCeEEEcCCcccC-eEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 9999887665444 33 33333333332 2 235677777777755 555566666667666653
No 264
>PRK06988 putative formyltransferase; Provisional
Probab=59.85 E-value=38 Score=32.21 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=24.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+++... .......+.|.+.|++|..+.+..+.
T Consensus 3 mkIvf~Gs~-----------~~a~~~L~~L~~~~~~i~~Vvt~~d~ 37 (312)
T PRK06988 3 PRAVVFAYH-----------NVGVRCLQVLLARGVDVALVVTHEDN 37 (312)
T ss_pred cEEEEEeCc-----------HHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 899999751 24555677777789998877665433
No 265
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=59.83 E-value=19 Score=33.89 Aligned_cols=42 Identities=14% Similarity=-0.044 Sum_probs=32.5
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
|++|||+++.... .+...-.-.....++++|.+.||+|..+.
T Consensus 1 ~~~~~i~vl~gg~--s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGD--SPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCCcEEEEEeCCC--CCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 3578999999754 23555556778889999999999998774
No 266
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=59.45 E-value=39 Score=32.10 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=23.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||+++... .+.....++|.+.||++..+.+..
T Consensus 1 mkIvf~G~~-----------~~a~~~L~~L~~~~~~i~~Vvt~~ 33 (309)
T PRK00005 1 MRIVFMGTP-----------EFAVPSLKALLESGHEVVAVVTQP 33 (309)
T ss_pred CEEEEECCC-----------HHHHHHHHHHHHCCCcEEEEECCC
Confidence 899999752 245667777777789977665543
No 267
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=59.16 E-value=49 Score=31.22 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=25.9
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.|||+|+.. | .+.....++|.+.||||.-+.+..+.
T Consensus 1 ~mkivF~GT--p---------~fa~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGT--P---------EFAVPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcC--c---------hhhHHHHHHHHhCCCceEEEEeCCCC
Confidence 489999875 2 13445567777789999888877766
No 268
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=59.04 E-value=11 Score=32.93 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=30.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|..++++. || ..|-..++.+|++.|.+.+|+|..++...
T Consensus 1 mpLiIlTG-yP----gsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTG-YP----GSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEec-CC----CCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 45666665 44 36778899999999999999998877643
No 269
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=58.76 E-value=17 Score=33.17 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=29.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+.... |=..-.+..|+++|.+.| +|+|+.+..+.
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 789987763 222335888999999988 99999987766
No 270
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.50 E-value=41 Score=28.62 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCeEEEEEeCCCc-HH----HHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCC
Q 039338 341 PDVYLIVAGSGPW-EQ----RYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFP 415 (493)
Q Consensus 341 ~~~~l~i~G~g~~-~~----~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~ 415 (493)
.+-+++|+|.|.. .. .+.+.+.+|.+.... .+++.+.++.||+++..+..++ +.-.|.+.-| .+.-|.+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~~~---ii~~~~~~~~--~viIDla 116 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGKPG---LVKGDMVKPG--AVVIDVG 116 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCCCc---eecHHHccCC--eEEEEcc
Confidence 4678999998863 32 233333457676664 3789999999999998774322 2333333333 4444543
Q ss_pred CCccceeeeCcceEEECC-CHHHHHHH
Q 039338 416 SIKGTIVVDDEFGFMFAP-NVESLHKT 441 (493)
Q Consensus 416 ~~~~e~v~~~~~G~~~~~-d~~~l~~~ 441 (493)
--+ + +. ..+|-++-. |.+...+.
T Consensus 117 ~pr-d-vd-~~~~~~~G~~d~~~~~~~ 140 (168)
T cd01080 117 INR-V-PD-KSGGKLVGDVDFESAKEK 140 (168)
T ss_pred CCC-c-cc-ccCCCeeCCcCHHHHHhh
Confidence 332 1 22 333444444 55554433
No 271
>PRK09358 adenosine deaminase; Provisional
Probab=58.34 E-value=1.8e+02 Score=27.99 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHhhCCCeEEEEEeCCC---cHHHHhhhc-CcEEEecCCC-HHHHHHHHHHcCEEE--eCCCCCCCC---
Q 039338 326 HPLLHEAFSKLMVKYPDVYLIVAGSGP---WEQRYKDFG-HQVLVMGSMS-PAELRAFYNAIDIFV--NPTLRPQGL--- 395 (493)
Q Consensus 326 ~~~ll~a~~~l~~~~~~~~l~i~G~g~---~~~~~~~l~-~~V~~~g~~~-~~~~~~~~~~adv~v--~ps~~~eg~--- 395 (493)
.+.+.++++..++.+-.+.+++.-.+. ....+..++ +++-.-..+. .++..++++..++.| +|+.. .-.
T Consensus 181 ~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri~Hg~~l~~~~~~~~~l~~~gi~v~~cP~Sn-~~l~~~ 259 (340)
T PRK09358 181 PSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERIGHGVRAIEDPALMARLADRRIPLEVCPTSN-VQTGAV 259 (340)
T ss_pred HHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCcccchhhhhccCHHHHHHHHHcCCeEEECCCcc-cccccc
Confidence 456667777766655455555532111 112233344 3332222332 356889999998875 67642 111
Q ss_pred ----ChHHHHHHHcCCcE-EecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCH
Q 039338 396 ----DLTLMEAMMSGKPV-MASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGEACRQYAASMFTA 470 (493)
Q Consensus 396 ----~~~~~EAm~~G~Pv-I~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~fs~ 470 (493)
...+-+.+..|+|| |+||.++... . + -.+++..+.... .-+.+.+.++..++.+.. |-.
T Consensus 260 ~~~~~~pi~~l~~~Gv~v~lgTD~~~~~~-----~------~-l~~e~~~~~~~~-~l~~~el~~l~~nai~~s---f~~ 323 (340)
T PRK09358 260 PSLAEHPLKTLLDAGVRVTINTDDPLVFG-----T------T-LTEEYEALAEAF-GLSDEDLAQLARNALEAA---FLS 323 (340)
T ss_pred CCcccChHHHHHHCCCEEEECCCCCcccC-----C------C-HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHH---CCC
Confidence 13578889999988 4456433220 0 0 113333333322 222444555555555443 555
Q ss_pred HHHHHHHHHHHHH
Q 039338 471 NKMALAYERLFLC 483 (493)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (493)
+..-+++.+-++.
T Consensus 324 ~~~k~~l~~~~~~ 336 (340)
T PRK09358 324 EEEKAALLAEVDA 336 (340)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 272
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=58.23 E-value=23 Score=33.19 Aligned_cols=106 Identities=12% Similarity=0.023 Sum_probs=56.6
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE 157 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
..++|||+++... + +..+..|.++.... +++|.++.+.... -.... ...+.+...+.. .
T Consensus 86 ~~~~~ri~vl~Sg-------~--gsnl~al~~~~~~~~~~~~i~~visn~~~--~~~lA-------~~~gIp~~~~~~-~ 146 (286)
T PRK06027 86 SAERKRVVILVSK-------E--DHCLGDLLWRWRSGELPVEIAAVISNHDD--LRSLV-------ERFGIPFHHVPV-T 146 (286)
T ss_pred cccCcEEEEEEcC-------C--CCCHHHHHHHHHcCCCCcEEEEEEEcChh--HHHHH-------HHhCCCEEEecc-C
Confidence 4578999999851 2 33467777776663 5788877766544 11111 112222222211 1
Q ss_pred CCccccccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 158 ADKWRYSKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
. ......-..+.+.+++.++|+|.+.++. ++..+....|.-++.+|.
T Consensus 147 ~--~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 147 K--ETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred c--cccchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 1 1111122355666778899999988652 333333333435677775
No 273
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=58.16 E-value=32 Score=32.25 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=55.7
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE 157 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
..++|||+++... + +..+..|.++.... +++|.++.+.... -.... ...+.+...+.. .
T Consensus 86 ~~~~~ri~vl~Sg-------~--g~nl~al~~~~~~~~~~~~i~~visn~~~--~~~lA-------~~~gIp~~~~~~-~ 146 (286)
T PRK13011 86 PAARPKVLIMVSK-------F--DHCLNDLLYRWRIGELPMDIVGVVSNHPD--LEPLA-------AWHGIPFHHFPI-T 146 (286)
T ss_pred cccCceEEEEEcC-------C--cccHHHHHHHHHcCCCCcEEEEEEECCcc--HHHHH-------HHhCCCEEEeCC-C
Confidence 4568999999851 2 33467777776654 5788887665433 11111 112333332211 1
Q ss_pred CCccccccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 158 ADKWRYSKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
. ......-..+.+.+++.++|+|++.++. ++.-+....+..++.+|.
T Consensus 147 ~--~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK13011 147 P--DTKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHH 195 (286)
T ss_pred c--CchhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEecc
Confidence 1 1111112345566667899999987652 333333333446777775
No 274
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=57.96 E-value=39 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEe
Q 039338 101 GMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 101 G~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
..+.-...++..|...||+|..+.
T Consensus 11 ~H~lG~~~~~~~l~~~G~~V~~lg 34 (119)
T cd02067 11 GHDIGKNIVARALRDAGFEVIDLG 34 (119)
T ss_pred hhhHHHHHHHHHHHHCCCEEEECC
Confidence 334446678889999999995554
No 275
>PRK05920 aromatic acid decarboxylase; Validated
Probab=57.15 E-value=24 Score=31.09 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=29.3
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.+||++-.. . +.+......+++.|.+.|++|.++.+....
T Consensus 3 ~krIllgIT------G-siaa~ka~~lvr~L~~~g~~V~vi~T~~A~ 42 (204)
T PRK05920 3 MKRIVLAIT------G-ASGAIYGVRLLECLLAADYEVHLVISKAAQ 42 (204)
T ss_pred CCEEEEEEe------C-HHHHHHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 466776653 1 333456889999999999999999876543
No 276
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.15 E-value=1.1e+02 Score=28.36 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHc-Cc
Q 039338 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSE-GP 450 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~-~~ 450 (493)
..-..-++.||++|.-...-|++=-++++.. .+.+++....++.. + -.....-+..+| +...++++|.+.+.. +|
T Consensus 44 p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~-~-~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP 120 (264)
T cd01020 44 PTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHD-D-KEGDNPHLWYDPETMSKVANALADALVKADP 120 (264)
T ss_pred HHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeeccccc-C-CCCCCCceecCHhHHHHHHHHHHHHHHHhCc
Confidence 3455778899999985533355444555544 35566655443321 0 011234456666 777888888777762 15
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 039338 451 MRLAQRGEACRQYAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i 484 (493)
+......+++.++.++ .+.+-+++.+.+..+
T Consensus 121 ~~~~~y~~N~~~~~~~---l~~l~~~~~~~~~~~ 151 (264)
T cd01020 121 DNKKYYQANAKKFVAS---LKPLAAKIAELSAKY 151 (264)
T ss_pred ccHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Confidence 5555566666665554 244444455544443
No 277
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=57.05 E-value=22 Score=29.14 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=27.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEE
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHI 122 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v 122 (493)
|||+++-. +..|-.+..+..+++.|...|++|.+
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 78877764 36677888889999999999999873
No 278
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=56.87 E-value=23 Score=32.89 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=21.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
||||++. +.+..-..|.+.|. .+++|...+...
T Consensus 1 M~iLi~G----------~~GqLG~~L~~~l~-~~~~v~a~~~~~ 33 (281)
T COG1091 1 MKILITG----------ANGQLGTELRRALP-GEFEVIATDRAE 33 (281)
T ss_pred CcEEEEc----------CCChHHHHHHHHhC-CCceEEeccCcc
Confidence 6766664 33445666778777 567877766544
No 279
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=56.71 E-value=88 Score=26.37 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHH-HcCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHcCcHHHHHHHH
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAM-MSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSEGPMRLAQRGE 458 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm-~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~~~~~~ 458 (493)
-.||+++.|-- +| ==.||+ .+|+-||+-|...+.. . ....-+. =++.+..++-.+... -..++.+.+
T Consensus 88 y~ADVVLVPLE--DG---DR~EAL~~mGK~VIaIDLNPLSR-T--ar~Atit---IVDni~RA~p~~~~~-~~~lk~~~~ 155 (178)
T PF02006_consen 88 YSADVVLVPLE--DG---DRTEALVKMGKTVIAIDLNPLSR-T--ARTATIT---IVDNITRAIPNMIEF-ARELKKKDR 155 (178)
T ss_pred eeccEEEeccC--CC---cHHHHHHHcCCeEEEEeCCCccc-c--cccCcee---eehhHHHHHHHHHHH-HHHHhcCCH
Confidence 36899999982 45 334554 6899999999877763 1 1111111 125677777766655 444443344
Q ss_pred HHHHHHHHhcCHHHHHHHH
Q 039338 459 ACRQYAASMFTANKMALAY 477 (493)
Q Consensus 459 ~~~~~~~~~fs~~~~~~~~ 477 (493)
...+.+.+.|+-++....-
T Consensus 156 ~el~~iv~~~dN~~~L~~a 174 (178)
T PF02006_consen 156 EELEEIVKNYDNKKNLSEA 174 (178)
T ss_pred HHHHHHHHhcCcHHHHHHH
Confidence 4444555557776665443
No 280
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=56.20 E-value=35 Score=29.99 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=32.1
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.||++.|+.. ...-|-...+.+|+.+|++.|+.|.++-.....
T Consensus 16 ~~kvI~v~s~----kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 16 EIKVLLITSV----KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CCcEEEEecC----CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3787777652 244566778899999999999999998765443
No 281
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=56.03 E-value=27 Score=30.52 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=28.1
Q ss_pred ceEEEEEeccCCCCCCCCchHHH--HHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERH--AHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.+||++-.. ||...+ +..+++.|.+.|++|+++.+....
T Consensus 5 ~k~IllgVT--------Gsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIGFGLT--------GSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEEEEEc--------CHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 456766553 444443 489999999999999999876543
No 282
>CHL00194 ycf39 Ycf39; Provisional
Probab=55.98 E-value=18 Score=34.39 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=24.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||+++. |.+..=..+++.|.++||+|.+++...
T Consensus 1 MkIlVtG----------atG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 1 MSLLVIG----------ATGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred CEEEEEC----------CCcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 6777763 334444568899999999999998653
No 283
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=55.77 E-value=20 Score=35.14 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=27.9
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
...+|||++. ||.+..-..+++.|.++||+|+.+...
T Consensus 18 ~~~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 18 PSEKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3467999876 444445667999999999999998753
No 284
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=55.25 E-value=35 Score=33.82 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.7
Q ss_pred cCCCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 77 NQPSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 77 ~~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.+.+.++|+|+-|+.. ...-|-...+.+|+.+|+.+|+.|.++-.++..
T Consensus 114 ~r~~~~~~~vIav~n~----KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 114 HRRGSEHLQVIAVTNF----KGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred CCCCCCCceEEEEEcC----CCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 3445567887777651 122334445788999999999999998766544
No 285
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=55.13 E-value=42 Score=25.69 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=15.3
Q ss_pred hHHHHHHhcCCCCcEEEeCc
Q 039338 167 WEQFDEENQREPFDVVHSES 186 (493)
Q Consensus 167 ~~~~~~~~~~~~~DiI~~~~ 186 (493)
...+.+..++.++|+|++-.
T Consensus 51 ~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp HHHHHHHHHHTTESEEEESS
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 46677777788999998863
No 286
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=54.73 E-value=38 Score=33.42 Aligned_cols=90 Identities=12% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCCChHHHHHHHcCCcEEecCCCC---CccceeeeCcceEEECC--CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 393 QGLDLTLMEAMMSGKPVMASRFPS---IKGTIVVDDEFGFMFAP--NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 393 eg~~~~~~EAm~~G~PvI~s~~~~---~~~e~v~~~~~G~~~~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
-+++..+-=-|+||-.|+..+... .. +.+.....=+-+.. +-.+|.++|+-+.++ ++..+++++++++++.+.
T Consensus 224 ~~~S~RlkylL~c~SvVl~~~~~~~e~f~-~~L~P~vHYVPV~~~~d~sdL~~~v~w~~~~-~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 224 NAWSGRLKYLLACNSVVLKVKSPYYEFFY-RALKPWVHYVPVKRDDDLSDLEEKVEWLNAH-DDEAQRIAENGQRFAREY 301 (395)
T ss_pred ceeehhHHHHHcCCceEEEeCCcHHHHHH-hhhcccccEEEeccccchhhHHHHhhhcccC-hHHHHHHHHHHHHHHHHH
Confidence 344445555588888888754221 11 22334444444544 678999999988887 899999999999999998
Q ss_pred cCHHHHHHHHHHHHHHH
Q 039338 468 FTANKMALAYERLFLCI 484 (493)
Q Consensus 468 fs~~~~~~~~~~~~~~i 484 (493)
.+.+.+..=+..++.+.
T Consensus 302 L~~~~~~~Y~~~LL~eY 318 (395)
T PF05686_consen 302 LTMEDVYCYWRRLLLEY 318 (395)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 89888877777776654
No 287
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=54.61 E-value=26 Score=31.84 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=30.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||++.|.. + ...-|..+.+.+|+-.|++.|..|.++-..+.+
T Consensus 1 M~~iai~s--~--kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN 42 (243)
T PF06564_consen 1 MKVIAIVS--P--KGGVGKTTLTANLAWALARLGESVLAIDLDPQN 42 (243)
T ss_pred CcEEEEec--C--CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH
Confidence 66555554 1 244455667889999999999999999877655
No 288
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=54.41 E-value=67 Score=29.86 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=46.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
+|+++|+. ..|--+. .|++.|.++|++|+=+.......+......... .....+.++++...
T Consensus 2 ~K~ALITG------ITGQDGs---YLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~---~~~~~~~l~l~~gD------ 63 (345)
T COG1089 2 GKVALITG------ITGQDGS---YLAELLLEKGYEVHGIKRRSSSFNTPRIHLYED---PHLNDPRLHLHYGD------ 63 (345)
T ss_pred CceEEEec------ccCCchH---HHHHHHHhcCcEEEEEeeccccCCcccceeccc---cccCCceeEEEecc------
Confidence 68999986 2333333 389999999999999887654422222111000 11222233443322
Q ss_pred ccchHHHHHHhcCCCCcEEEe
Q 039338 164 SKGWEQFDEENQREPFDVVHS 184 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~ 184 (493)
......+.++++.-+||-|+-
T Consensus 64 LtD~~~l~r~l~~v~PdEIYN 84 (345)
T COG1089 64 LTDSSNLLRILEEVQPDEIYN 84 (345)
T ss_pred ccchHHHHHHHHhcCchhhee
Confidence 112345666666778998853
No 289
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=54.18 E-value=46 Score=24.12 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=31.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..++++.+. .+........+++.|+++|+.|..+--....
T Consensus 16 k~~v~i~HG------~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG 55 (79)
T PF12146_consen 16 KAVVVIVHG------FGEHSGRYAHLAEFLAEQGYAVFAYDHRGHG 55 (79)
T ss_pred CEEEEEeCC------cHHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 347777763 3666667899999999999999988776665
No 290
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.06 E-value=69 Score=28.19 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCCCeEEEEEeCCC--cHHHH---hhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHH
Q 039338 329 LHEAFSKLMVKYPDVYLIVAGSGP--WEQRY---KDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAM 403 (493)
Q Consensus 329 ll~a~~~l~~~~~~~~l~i~G~g~--~~~~~---~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm 403 (493)
.+++++++++++++ +++|-|. ..+.. .+.+-+..+.+.++ .++.++-++.++.++|.. ..|.-+++|+
T Consensus 42 a~~~I~~l~~~~~~---~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~-~~vi~~a~~~~i~~iPG~---~TptEi~~A~ 114 (201)
T PRK06015 42 ALDAIRAVAAEVEE---AIVGAGTILNAKQFEDAAKAGSRFIVSPGTT-QELLAAANDSDVPLLPGA---ATPSEVMALR 114 (201)
T ss_pred HHHHHHHHHHHCCC---CEEeeEeCcCHHHHHHHHHcCCCEEECCCCC-HHHHHHHHHcCCCEeCCC---CCHHHHHHHH
Confidence 44566666666664 3345432 22222 22335555555543 666677777777777652 3455667777
Q ss_pred HcCCcEE
Q 039338 404 MSGKPVM 410 (493)
Q Consensus 404 ~~G~PvI 410 (493)
.+|.-+|
T Consensus 115 ~~Ga~~v 121 (201)
T PRK06015 115 EEGYTVL 121 (201)
T ss_pred HCCCCEE
Confidence 7776554
No 291
>PRK10037 cell division protein; Provisional
Probab=53.86 E-value=22 Score=32.53 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=28.4
Q ss_pred eEEEEEeccCCCCCCCCchHH--HHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMER--HAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~--~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+-+.. ..||++. .+.+|+.+|+++|+.|.++-.+...
T Consensus 1 ~~~iav~n------~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 1 MAILGLQG------VRGGVGTTSITAALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred CcEEEEec------CCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 66554544 4455554 4678999999999999999765543
No 292
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=53.53 E-value=22 Score=29.80 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=28.0
Q ss_pred HHHHHHH-cCEEEeCCC-----CCCCCChHHHHHHHcCCcEEecC
Q 039338 375 LRAFYNA-IDIFVNPTL-----RPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 375 ~~~~~~~-adv~v~ps~-----~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
+...+.. +|++|+.-. .+.|+--.+.+|++.|+||++.-
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 4444555 899888532 23556667999999999999874
No 293
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=53.29 E-value=30 Score=28.71 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=31.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||+++-.. ..|.++..+..+++.|...|++|.+.....
T Consensus 2 ~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~ 40 (151)
T COG0716 2 MKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDIRPG 40 (151)
T ss_pred CeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEeecCC
Confidence 678888763 668999999999999999999996655443
No 294
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=53.17 E-value=1.9e+02 Score=26.77 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=87.4
Q ss_pred CCCcEEEEEeccccc---------ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHH--hhh---c-CcEEEecCCCH
Q 039338 308 KNASLVLGVAGRLVK---------DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRY--KDF---G-HQVLVMGSMSP 372 (493)
Q Consensus 308 ~~~~~~i~~~Gr~~~---------~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~--~~l---~-~~V~~~g~~~~ 372 (493)
.+.+++|+.+|.-.. +++++.+-.++..+-+--|+..|+++...-+--.+ .++ . ++|+=.|--=+
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLD 166 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLD 166 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCcc
Confidence 344588888886543 45666777777777766789999999875332222 222 2 66666664433
Q ss_pred HHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEec-CCCCCc-cceeeeCcceEEECCCHHHHHHHHHHHHHcCc
Q 039338 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS-RFPSIK-GTIVVDDEFGFMFAPNVESLHKTLEAAVSEGP 450 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s-~~~~~~-~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~~~ 450 (493)
..-..++-.-.+-+.|+.- +| ..+=|=-...+||-+. ++.|.+ .++..+-+ .+.|++.+.+.-.+..
T Consensus 167 saRFryLi~~~Lg~~pss~-hg--wIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~----t~~d~e~w~eihK~v~---- 235 (332)
T KOG1495|consen 167 SARFRYLIGNRLGVHPSSC-HG--WIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLG----TDYDPENWKEIHKQVV---- 235 (332)
T ss_pred HHHHHHHHHHHhCCCcccc-eE--EEeeccCCccceecccccccceEHhHhChhhc----CCCCHHHHHHHHHHHH----
Confidence 4444555555667777732 23 3444555555666554 233322 01111111 1226677665444433
Q ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHhhccc
Q 039338 451 MRLAQRGEACRQYAASM-FTANKMALAYERLFLCIKNETF 489 (493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~-fs~~~~~~~~~~~~~~i~~~~~ 489 (493)
..|++.++-. |+-=.++-...++.+.++.+..
T Consensus 236 -------~sayeviklKGyTswaIglsva~l~~ail~n~~ 268 (332)
T KOG1495|consen 236 -------DSAYEVIKLKGYTSWAIGLSVADLAQAILRNLR 268 (332)
T ss_pred -------HHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcC
Confidence 2344444333 4444455556666666665544
No 295
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=53.11 E-value=15 Score=27.14 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=31.2
Q ss_pred cccchHHHHHHhcCCCCcEEEeCcc-------chhHHhhhccCcEEEEeccc
Q 039338 163 YSKGWEQFDEENQREPFDVVHSESV-------ALPHWLARNVTNLAVSWHGI 207 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~~DiI~~~~~-------~~~~~~~~~~p~~v~~~h~~ 207 (493)
....+..++.++.++++||||.|+. .+..+...+++ .|.|=|..
T Consensus 35 ~~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlk-tVfTDHSL 85 (90)
T PF08288_consen 35 LFGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLK-TVFTDHSL 85 (90)
T ss_pred HHHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCc-EEeecccc
Confidence 4455677788888999999999975 23333444566 88888864
No 296
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=52.82 E-value=5.7 Score=40.70 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
+..-..+..+++.|+++||+|+++++..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 5677889999999999999999999865
No 297
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=52.58 E-value=2e+02 Score=26.75 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=29.8
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.|++|.+.. ..--....+..+.+++.++|+++.++......
T Consensus 3 ~IGvivp~~----~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~ 43 (279)
T PF00532_consen 3 TIGVIVPDI----SNPFFAEIIRGIEQEAREHGYQLLLCNTGDDE 43 (279)
T ss_dssp EEEEEESSS----TSHHHHHHHHHHHHHHHHTTCEEEEEEETTTH
T ss_pred EEEEEECCC----CCcHHHHHHHHHHHHHHHcCCEEEEecCCCch
Confidence 478888754 22335667888899999999999888765544
No 298
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=52.42 E-value=1e+02 Score=30.40 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred CcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEe-CCCcHHHHhhh-cCc--EEEecCCCHHHHHHHHH--HcC
Q 039338 310 ASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAG-SGPWEQRYKDF-GHQ--VLVMGSMSPAELRAFYN--AID 383 (493)
Q Consensus 310 ~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G-~g~~~~~~~~l-~~~--V~~~g~~~~~~~~~~~~--~ad 383 (493)
++.+-+...++++..-...++ +++++++|++.+++.. .....+..++. ++. +.+++.=..--+..+++ +-|
T Consensus 49 ~p~vWiHaaSVGEv~a~~pLv---~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~ 125 (419)
T COG1519 49 GPLVWIHAASVGEVLAALPLV---RALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPK 125 (419)
T ss_pred CCeEEEEecchhHHHHHHHHH---HHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCC
Confidence 335666777777655544444 4566677899888865 43344445444 332 33344322234444543 467
Q ss_pred EEEeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 384 IFVNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 384 v~v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
++|.-- .|-+|+.+.|+-..|+|.+.-+
T Consensus 126 l~Ii~E--tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 126 LLIIME--TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred EEEEEe--ccccHHHHHHHHHcCCCEEEEe
Confidence 777644 5899999999999999998765
No 299
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=52.27 E-value=1.7e+02 Score=25.86 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=70.1
Q ss_pred HHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc--CcEEEec-CCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcC
Q 039338 330 HEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG--HQVLVMG-SMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSG 406 (493)
Q Consensus 330 l~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~--~~V~~~g-~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G 406 (493)
...++.|.+. +.++.++..... +.++++. .+|.+.. ... ...+..+|+++..+-..+----...+|-..|
T Consensus 22 ~rk~~~Ll~~--ga~VtVvsp~~~-~~l~~l~~~~~i~~~~~~~~----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 22 LRKARLLLKA--GAQLRVIAEELE-SELTLLAEQGGITWLARCFD----ADILEGAFLVIAATDDEELNRRVAHAARARG 94 (205)
T ss_pred HHHHHHHHHC--CCEEEEEcCCCC-HHHHHHHHcCCEEEEeCCCC----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcC
Confidence 3444555554 346666664332 3344443 3666643 332 2346778888776522111123455666889
Q ss_pred CcEEecCCCCCcc----ceeeeCcceEEECC---C---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc
Q 039338 407 KPVMASRFPSIKG----TIVVDDEFGFMFAP---N---VESLHKTLEAAVSEGPMRLAQRGEACRQYAASMF 468 (493)
Q Consensus 407 ~PvI~s~~~~~~~----e~v~~~~~G~~~~~---d---~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~f 468 (493)
+||-+.+.+.... -++..+..-+-+.. + ...+.+.|++++...-..+.++....|+.+++..
T Consensus 95 ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 95 VPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATLAATWRDAVKKRL 166 (205)
T ss_pred CEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhC
Confidence 9997776555431 23334433333321 2 3566666777765334555566667777776643
No 300
>PRK07308 flavodoxin; Validated
Probab=51.99 E-value=41 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.1
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
..|..+..+..+++.|.+.|++|.+.-..
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEecc
Confidence 45888888999999999999998886544
No 301
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=51.54 E-value=1.5e+02 Score=25.16 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=45.2
Q ss_pred cCEEEeCCCCCCCCChHHHHHHHcCCcEEecCCCCCcc---ceeeeCcceEEECC-CHHHHHHHHHHHHHc
Q 039338 382 IDIFVNPTLRPQGLDLTLMEAMMSGKPVMASRFPSIKG---TIVVDDEFGFMFAP-NVESLHKTLEAAVSE 448 (493)
Q Consensus 382 adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~---e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~ 448 (493)
.|++++-..-++.-|..+++.+....|||........+ +.+..+..|++..+ +.+++.+++..++..
T Consensus 48 ~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 48 VQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 57877744323445667777777778887653322221 23455778999999 999999999988764
No 302
>KOG4131 consensus Ngg1-interacting factor 3 protein NIF3L1 [General function prediction only]
Probab=51.36 E-value=36 Score=30.37 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=50.7
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC-cHHHHhhhc-----CcEEEecCCCHHHHHHHHHHcCEEE
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP-WEQRYKDFG-----HQVLVMGSMSPAELRAFYNAIDIFV 386 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~~~~l~-----~~V~~~g~~~~~~~~~~~~~adv~v 386 (493)
.++| ||+..-|---.+++.++++++..+.+++-..- |. ....++..+ ....+.| -.+|+++
T Consensus 145 ~~G~-gr~~e~~~~~~~~~~l~~ik~~l~~v~val~~-g~~~~~~i~~V~vcAgsg~svlk~-----------~~adly~ 211 (272)
T KOG4131|consen 145 TIGY-GREEETKINLNVVEILKRIKRGLSSVRVALAV-GHTLESQIKKVAVCAGSGSSVLKG-----------VDADLYI 211 (272)
T ss_pred cccc-cceeeccCcccHHHHHHHHHhcCCeEEEeecc-CCccccceeEEEEeeccCcceecc-----------ccccEEE
Confidence 4666 88887665556888888887765666654432 22 222222211 2222222 1356666
Q ss_pred eCCCCCCCCChHHHHHHHcCCcEEecCC
Q 039338 387 NPTLRPQGLDLTLMEAMMSGKPVMASRF 414 (493)
Q Consensus 387 ~ps~~~eg~~~~~~EAm~~G~PvI~s~~ 414 (493)
. +|-..--++++++.|+-||..+-
T Consensus 212 T----GEmSHH~vL~~~~~g~sVilc~H 235 (272)
T KOG4131|consen 212 T----GEMSHHDVLDAAANGISVILCEH 235 (272)
T ss_pred e----ccccHHHHHHHHHcCCeEEEecC
Confidence 3 56666778888888888887753
No 303
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.20 E-value=2.1e+02 Score=28.00 Aligned_cols=158 Identities=13% Similarity=0.240 Sum_probs=81.7
Q ss_pred EecccccccChHHHHHHHHHHHhhCCCeEEEEEe-CCCcHH---HHhhh-------c-CcEEEe-----cCCCHHHHHHH
Q 039338 316 VAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAG-SGPWEQ---RYKDF-------G-HQVLVM-----GSMSPAELRAF 378 (493)
Q Consensus 316 ~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G-~g~~~~---~~~~l-------~-~~V~~~-----g~~~~~~~~~~ 378 (493)
|.|+....+-.....+.+.+.+++ ++.++|+- +|...+ ..+++ . ++|.|. |---.++...+
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred eEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 445556666666777777777664 45555553 233221 12221 1 555553 22222344444
Q ss_pred HHHcCE--EEeCCCCCCC-CChHHHHHHHcCCcEEecCCCCCccceeeeCc----ceEEECC-CHHHHHHHHHHHHHcCc
Q 039338 379 YNAIDI--FVNPTLRPQG-LDLTLMEAMMSGKPVMASRFPSIKGTIVVDDE----FGFMFAP-NVESLHKTLEAAVSEGP 450 (493)
Q Consensus 379 ~~~adv--~v~ps~~~eg-~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~----~G~~~~~-d~~~l~~~i~~ll~~~~ 450 (493)
=...|+ ++++-+.+.. -|-++.--.+.++|||--..|..-+++ +.-. .+-++-- |.+.|.+.+.++..++.
T Consensus 237 k~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDl-E~F~pk~FvsrlLGmGDi~glvek~~ev~~~d~ 315 (483)
T KOG0780|consen 237 KETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDL-EPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDDA 315 (483)
T ss_pred HHhhccceEEEEecccCCCCCceeeehhhhCCCEEEEecCcccccc-CCCChHHHHHHHhccccHHHHHHHHHHHhhhhH
Confidence 455666 3443321111 122333345679999987766554322 2111 1223333 88888888888873312
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 039338 451 MRLAQRGEACRQYAASMFTANKMALAYERLFL 482 (493)
Q Consensus 451 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~ 482 (493)
+.+. ++ .-..+|+...+.+++..+.+
T Consensus 316 ~el~---~k---l~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 316 KELV---EK---LKQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHH---HH---HHhCCccHHHHHHHHHHHHh
Confidence 2222 21 22345999999888887765
No 304
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=51.07 E-value=36 Score=32.24 Aligned_cols=39 Identities=36% Similarity=0.634 Sum_probs=28.3
Q ss_pred eEEEEEeccCCCCCCCCchHHH--HHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERH--AHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~--~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||+++++.. ||++.. ...++-+++++|+.|.+++.++.+
T Consensus 1 ~r~~~~~GK-------GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGK-------GGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEES-------TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecC-------CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 789999853 555554 455888889999999999887654
No 305
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=50.87 E-value=35 Score=31.47 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=30.1
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..++-++||. ..+|.+. .+++.|+++|++|.++....+.
T Consensus 4 ~~~~~~lITG------ASsGIG~---~~A~~lA~~g~~liLvaR~~~k 42 (265)
T COG0300 4 MKGKTALITG------ASSGIGA---ELAKQLARRGYNLILVARREDK 42 (265)
T ss_pred CCCcEEEEEC------CCchHHH---HHHHHHHHCCCEEEEEeCcHHH
Confidence 3566777775 5577774 5999999999999999987654
No 306
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=50.81 E-value=26 Score=32.08 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+....= . ...-+..|+++|++ +++|+|+++..+.
T Consensus 1 M~ILvtNDDG-----i--~apGl~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDG-----I--NAEGINTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCC-----C--CChhHHHHHHHHHh-CCcEEEEccCCCC
Confidence 7899888741 1 12227888999976 5799999987766
No 307
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=50.54 E-value=31 Score=32.68 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.3
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
..+|||+++.. | ..-..++..|.+.||+|.++...
T Consensus 2 ~~~m~I~iiG~--------G---~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGA--------G---AWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECc--------c---HHHHHHHHHHHHCCCEEEEEeCC
Confidence 35799999953 2 23456889999999999888654
No 308
>PRK05723 flavodoxin; Provisional
Probab=50.49 E-value=28 Score=28.98 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=29.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
|||.|+-. +..|-++..+..+++.|.+.|++|.++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 67777754 3778889999999999999999997753
No 309
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=50.36 E-value=22 Score=31.99 Aligned_cols=118 Identities=17% Similarity=0.106 Sum_probs=65.8
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCCCCc
Q 039338 101 GMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQREPFD 180 (493)
Q Consensus 101 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 180 (493)
|.+++-..+++.|.+.||+|.++-........... .....+....... -....+..--.+.|
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~-----------~~~~~~~v~gd~t-------~~~~L~~agi~~aD 68 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA-----------DELDTHVVIGDAT-------DEDVLEEAGIDDAD 68 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh-----------hhcceEEEEecCC-------CHHHHHhcCCCcCC
Confidence 33566778999999999999999876554101000 0011122111111 13333333356789
Q ss_pred EEEeCcc-----chhHHhh---hccCcEEEEeccchhhhhhhhhhhhhhcCCCCccchHhHhHHHHHHHHHHHHHHhhcc
Q 039338 181 VVHSESV-----ALPHWLA---RNVTNLAVSWHGIALESLQSGIFQDLTRKPLEPMSLAFNKSLQGVMLKVLNEIRFFNK 252 (493)
Q Consensus 181 iI~~~~~-----~~~~~~~---~~~p~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (493)
++.+-+. .+...++ .+.|+++...++..+.. .+. .-.
T Consensus 69 ~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~---------------------------~~~--------~~g 113 (225)
T COG0569 69 AVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEHEK---------------------------VLE--------KLG 113 (225)
T ss_pred EEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHH---------------------------HHH--------HcC
Confidence 8887543 2223233 35687888888642211 000 013
Q ss_pred CCeEEEcChhHHHHHHHHh
Q 039338 253 YAHHVAISDSCGEMLRDVY 271 (493)
Q Consensus 253 ~d~ii~~S~~~~~~~~~~~ 271 (493)
+|.++.+...+...+.+..
T Consensus 114 ~~~ii~Pe~~~~~~l~~~i 132 (225)
T COG0569 114 ADVIISPEKLAAKRLARLI 132 (225)
T ss_pred CcEEECHHHHHHHHHHHHh
Confidence 7888988888888887754
No 310
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.34 E-value=75 Score=25.76 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=28.9
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
++.||++-+. ...+......-++..|+..|++|.-.....
T Consensus 1 ~~~~v~~a~~------g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 1 RRPRILVAKM------GQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCCEEEEEee------CCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 3567877775 336667767778888899999988765543
No 311
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=50.07 E-value=26 Score=30.10 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=28.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+++-. +..|-.+..+..+++.|.. |++|.++-..
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~ 37 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVNLH 37 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEEhh
Confidence 78888765 2557777778888999987 9999887543
No 312
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=50.05 E-value=1e+02 Score=31.08 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=52.9
Q ss_pred HHHHHHHHHc--CEEEeCCCCCCCCChHHHHHHHc---CCcEEec-CCCCCcc--ceeeeCcceEEECC-CHHHHHHHHH
Q 039338 373 AELRAFYNAI--DIFVNPTLRPQGLDLTLMEAMMS---GKPVMAS-RFPSIKG--TIVVDDEFGFMFAP-NVESLHKTLE 443 (493)
Q Consensus 373 ~~~~~~~~~a--dv~v~ps~~~eg~~~~~~EAm~~---G~PvI~s-~~~~~~~--e~v~~~~~G~~~~~-d~~~l~~~i~ 443 (493)
++..+.+... |+++.-..-++.-|+.+++.+.. +.|||.- ..+.+.. +-+..|..-|+..| +++.+...+.
T Consensus 38 ~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ 117 (464)
T COG2204 38 EEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE 117 (464)
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHH
Confidence 5555555554 66666443356667888887766 6888764 4444320 34556788889999 9999999999
Q ss_pred HHHHc
Q 039338 444 AAVSE 448 (493)
Q Consensus 444 ~ll~~ 448 (493)
+.+..
T Consensus 118 ral~~ 122 (464)
T COG2204 118 RALEL 122 (464)
T ss_pred HHHHH
Confidence 99987
No 313
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=49.44 E-value=61 Score=34.60 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=21.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
|||+|+.. ..+.....++|.+.||+|..+.+
T Consensus 1 mkivf~g~-----------~~~a~~~l~~L~~~~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAY-----------HDIGCVGIEALLAAGYEIAAVFT 31 (660)
T ss_pred CeEEEECC-----------CHHHHHHHHHHHHCCCcEEEEEe
Confidence 78888864 12455566888888999884443
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=49.24 E-value=52 Score=30.13 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=51.3
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccc-cCCCCC-CCCCCceEeec--CC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQ-ENDDGS-NNKYPLLHFHE--GE 157 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~--~~ 157 (493)
+..+|.+-.+ ..-|-++.+..|.+.+.++|+.|-|++.++... ....... +.+.-. ....+.+++.. ..
T Consensus 28 ~a~~iGiTG~------PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp-~tGGAlLGDRiRM~~~~~d~~vfIRS~atR 100 (266)
T PF03308_consen 28 RAHVIGITGP------PGAGKSTLIDALIRELRERGKRVAVLAVDPSSP-FTGGALLGDRIRMQELSRDPGVFIRSMATR 100 (266)
T ss_dssp -SEEEEEEE-------TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG-CC---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred CceEEEeeCC------CCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC-CCCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence 3456777543 446778889999999999999999999877651 1111111 110000 01122222221 11
Q ss_pred CCccccccchHHHHHHhcCCCCcEEEeCccc
Q 039338 158 ADKWRYSKGWEQFDEENQREPFDVVHSESVA 188 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~ 188 (493)
...-...........+++...+|+|++.+.+
T Consensus 101 G~lGGls~~t~~~v~ll~aaG~D~IiiETVG 131 (266)
T PF03308_consen 101 GSLGGLSRATRDAVRLLDAAGFDVIIIETVG 131 (266)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-SEEEEEEES
T ss_pred CCCCCccHhHHHHHHHHHHcCCCEEEEeCCC
Confidence 1111233444556666677899999998764
No 315
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=49.12 E-value=32 Score=32.23 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=55.9
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE 157 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
..++|||+++... +| .-+..|..+..+.. .+|.++.+..... . +.- ...+.+...+. ..
T Consensus 90 ~~~~~kiavl~Sg-------~g--~nl~al~~~~~~~~l~~~i~~visn~~~~--~--~~A-----~~~gIp~~~~~-~~ 150 (289)
T PRK13010 90 DGQRPKVVIMVSK-------FD--HCLNDLLYRWRMGELDMDIVGIISNHPDL--Q--PLA-----VQHDIPFHHLP-VT 150 (289)
T ss_pred CCCCeEEEEEEeC-------CC--ccHHHHHHHHHCCCCCcEEEEEEECChhH--H--HHH-----HHcCCCEEEeC-CC
Confidence 4568999999852 22 23677777776553 5777766665441 1 110 11222322222 11
Q ss_pred CCccccccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 158 ADKWRYSKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
+ ......-..+.+.+++.++|+|.+.++. ++..+....+..++.+|.
T Consensus 151 ~--~~~~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHp 199 (289)
T PRK13010 151 P--DTKAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHH 199 (289)
T ss_pred c--ccccchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCc
Confidence 1 1111123456667778899999987652 222333333435777775
No 316
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=48.89 E-value=19 Score=28.66 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHHHHHHcCEEEeCCCCCCCC--ChHHHH---HHHcCCcEEecCCCC
Q 039338 374 ELRAFYNAIDIFVNPTLRPQGL--DLTLME---AMMSGKPVMASRFPS 416 (493)
Q Consensus 374 ~~~~~~~~adv~v~ps~~~eg~--~~~~~E---Am~~G~PvI~s~~~~ 416 (493)
.-..++..||++|.-. +|-+ =++.++ |.++|+|.|.-....
T Consensus 65 RT~~li~~aDvVVvrF--GekYKQWNaAfDAg~a~AlgKplI~lh~~~ 110 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRF--GEKYKQWNAAFDAGYAAALGKPLITLHPEE 110 (141)
T ss_pred HHHHHHhhCCEEEEEe--chHHHHHHHHhhHHHHHHcCCCeEEecchh
Confidence 3456799999998743 2322 133444 578999999886544
No 317
>PRK06703 flavodoxin; Provisional
Probab=48.77 E-value=36 Score=28.19 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=29.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+++-. +..|-.+..+..+++.|...|++|.++-..
T Consensus 2 mkv~IiY~-----S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 2 AKILIAYA-----SMSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CeEEEEEE-----CCCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 56666654 256888888999999999999999887543
No 318
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=48.36 E-value=1.6e+02 Score=25.62 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=51.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
|||+++.. .+| ..+..++++..... .+|..+.++..+ ....+.-. ..+.+...+ ..+ ..-
T Consensus 1 ~ki~VlaS-------G~G--SNlqaiida~~~~~~~a~i~~Visd~~~--A~~lerA~-----~~gIpt~~~-~~k-~~~ 62 (200)
T COG0299 1 KKIAVLAS-------GNG--SNLQAIIDAIKGGKLDAEIVAVISDKAD--AYALERAA-----KAGIPTVVL-DRK-EFP 62 (200)
T ss_pred CeEEEEEe-------CCc--ccHHHHHHHHhcCCCCcEEEEEEeCCCC--CHHHHHHH-----HcCCCEEEe-ccc-cCC
Confidence 57888774 122 34677888877432 456655555433 22222200 112222222 111 111
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEec
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWH 205 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h 205 (493)
+....-..+.+.+++.+||+|.+.++. +..-+....+..++.+|
T Consensus 63 ~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIH 108 (200)
T COG0299 63 SREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIH 108 (200)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecC
Confidence 122233566777788999999988751 22222233333567777
No 319
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=48.20 E-value=20 Score=34.04 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=31.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+++.... ....-.......|.++.+++||+|.++.+..-.
T Consensus 1 m~~~~~~~~~---~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPI---ESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCH---HHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 7999998732 122222334677999999999999999987655
No 320
>PRK09620 hypothetical protein; Provisional
Probab=48.14 E-value=68 Score=28.91 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCEEEEEecC
Q 039338 106 AHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 106 ~~~l~~~L~~~G~~V~v~~~~ 126 (493)
-..++++|.++|++|+++...
T Consensus 32 Gs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 32 GRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 356999999999999999754
No 321
>PLN02884 6-phosphofructokinase
Probab=47.96 E-value=53 Score=32.55 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=35.7
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCC-EEEEEecCCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGH-RVHIFTSPVDN 129 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~~ 129 (493)
++..|||++++.. ..--|+...+..+++.+...|+ +|.-+-.....
T Consensus 50 ~p~~~rIaIltsG----GdaPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~G 96 (411)
T PLN02884 50 EPEEVKAAIVTCG----GLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRG 96 (411)
T ss_pred CCcceEEEEEcCC----CCCccHhHHHHHHHHHHHHcCCcEEEEEccCHHH
Confidence 5678999999984 3556888899999999888888 67766655444
No 322
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=47.68 E-value=40 Score=29.44 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=29.4
Q ss_pred eEEEEEeccCCCCCCCCch-HHHHHHHHHHHHhCC-CEEEEEecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGM-ERHAHTLHVALARRG-HRVHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~-~~~~~~l~~~L~~~G-~~V~v~~~~~~ 128 (493)
||||+|..+ |. ..++. ......+++.+.+.| ++|.++-....
T Consensus 1 mkiLvI~as-p~--~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINAS-PR--PEGSFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE---SS--TTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcC-CC--CccCHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 899999985 32 21344 455678899999999 99999876554
No 323
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=47.47 E-value=27 Score=33.13 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.4
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
+|||+++.. |+++.+ ++-.|.+.|++|+++....
T Consensus 2 ~m~I~IiGa--------GaiG~~---~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGA--------GSLGSL---WACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECC--------CHHHHH---HHHHHHhCCCCeEEEEech
Confidence 689999964 777765 5566778899999998754
No 324
>PRK05693 short chain dehydrogenase; Provisional
Probab=47.19 E-value=32 Score=31.76 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
||+++|+. ..||.+. .+++.|.++|++|.+++..
T Consensus 1 mk~vlItG------asggiG~---~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITG------CSSGIGR---ALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEec------CCChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 67777774 4567665 4778889999999887654
No 325
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=47.07 E-value=37 Score=32.85 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 78 QPSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 78 ~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
+..+..|||++.. ..|..+ ..+++.|.++|++|.++...
T Consensus 5 ~~~~~~~~vLVtG-------~~GfIG---~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 5 GRESATGTYCVTG-------ATGYIG---SWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred ccccCCCEEEEEC-------CCcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 3456678888774 224444 55889999999999987543
No 326
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=46.97 E-value=1.7e+02 Score=27.87 Aligned_cols=42 Identities=26% Similarity=0.575 Sum_probs=27.8
Q ss_pred EEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEec
Q 039338 365 LVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS 412 (493)
Q Consensus 365 ~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s 412 (493)
...|.++.+.+..+ ..|++|+.+ -++ +++.+.-.+-+|||+.
T Consensus 248 i~~~~in~~kL~nf--~iD~fV~~a-CPr---~sidd~~~f~kPvlTP 289 (308)
T TIGR03682 248 ILLDNISPDQLRNL--DFDAYVNTA-CPR---IAIDDYARFKKPVLTP 289 (308)
T ss_pred EEeCCCCHHHHhcC--CcCEEEEcc-CCC---cccccHhhCCCcccCH
Confidence 33455777777666 589999855 222 3566777777887765
No 327
>PLN00198 anthocyanidin reductase; Provisional
Probab=46.67 E-value=49 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=24.9
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
+.+.|+|++.. ..|+.+ ..|++.|.++|++|.++....
T Consensus 6 ~~~~~~vlItG-------~~GfIG---~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 6 PTGKKTACVIG-------GTGFLA---SLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CCCCCeEEEEC-------CchHHH---HHHHHHHHHCCCEEEEEECCC
Confidence 34456665553 224444 558999999999998776543
No 328
>PRK06444 prephenate dehydrogenase; Provisional
Probab=46.03 E-value=35 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEE
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVH 121 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 121 (493)
|||++|. ..|++++. +++.|.+.||+|.
T Consensus 1 ~~~~iiG-------~~G~mG~~---~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIG-------KNGRLGRV---LCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEe-------cCCcHHHH---HHHHHHhCCCEEE
Confidence 7889886 33676665 7788888999986
No 329
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=45.98 E-value=34 Score=31.47 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+.... |=...-+..|+++|.+.| +|+|+.+..+.
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDD-------GVHSPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCC-------CCCCHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 788888764 212234788999998887 89999887665
No 330
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=45.93 E-value=87 Score=30.83 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=27.2
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+++|||+++.. | .....++.++.+.|++|.++......
T Consensus 10 ~~~~~ilIiG~---------g--~~~~~~~~a~~~~G~~v~~~~~~~~~ 47 (395)
T PRK09288 10 PSATRVMLLGS---------G--ELGKEVAIEAQRLGVEVIAVDRYANA 47 (395)
T ss_pred CCCCEEEEECC---------C--HHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 46789999853 2 13455777888999999998876533
No 331
>PRK08105 flavodoxin; Provisional
Probab=45.90 E-value=43 Score=27.81 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
..|-.+..+..+++.|.+.|++|.++..
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 6788899999999999999999998764
No 332
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=45.66 E-value=61 Score=34.68 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEE
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVH 121 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 121 (493)
....|||++.. |.+..=..|++.|.++|++|.
T Consensus 377 ~~~~mkiLVtG----------a~G~iG~~l~~~L~~~g~~v~ 408 (668)
T PLN02260 377 GKPSLKFLIYG----------RTGWIGGLLGKLCEKQGIAYE 408 (668)
T ss_pred CCCCceEEEEC----------CCchHHHHHHHHHHhCCCeEE
Confidence 34568987774 333444568899999999985
No 333
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=45.63 E-value=1.4e+02 Score=27.85 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=29.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
||++-|+.. ...|=.+.+.+|+..|.++| .|-++=...
T Consensus 1 M~~i~i~G~-----~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 1 MKVLSIVGY-----KATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred CcEEEEECC-----CCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 676666652 56888999999999999999 676665543
No 334
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=45.58 E-value=1.4e+02 Score=29.10 Aligned_cols=77 Identities=9% Similarity=0.015 Sum_probs=50.4
Q ss_pred CCcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 309 NASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 309 ~~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
+..+.|+..|.. ....++|...|.+++-++.++ ++..+-+++.+.+.+.++.++-++..
T Consensus 233 G~di~Iia~Gs~-----~~~aleAa~~L~~~Gi~v~vI----------------~~~~l~Pld~e~i~~~~~~~~~Ivvv 291 (355)
T PTZ00182 233 GKDVTIVGYGSQ-----VHVALKAAEELAKEGISCEVI----------------DLRSLRPWDRETIVKSVKKTGRCVIV 291 (355)
T ss_pred CCCEEEEEeCHH-----HHHHHHHHHHHHhCCCcEEEE----------------EEeeCCCCCHHHHHHHHhcCCEEEEE
Confidence 344777777765 366778888876654333332 34456667878889999888876663
Q ss_pred C--CCCCCCChHHHHHHHcC
Q 039338 389 T--LRPQGLDLTLMEAMMSG 406 (493)
Q Consensus 389 s--~~~eg~~~~~~EAm~~G 406 (493)
- ....|+|..+.|.++-.
T Consensus 292 EE~~~~GGlG~~Va~~l~e~ 311 (355)
T PTZ00182 292 HEAPPTCGIGAEIAAQIMED 311 (355)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 2 12367888888888654
No 335
>PRK07454 short chain dehydrogenase; Provisional
Probab=45.52 E-value=38 Score=30.49 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=25.1
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
.||.++|+. ..||.+ ..+++.|.++|++|.++...
T Consensus 5 ~~k~vlItG------~sg~iG---~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITG------ASSGIG---KATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 467777763 335544 55889999999998887654
No 336
>PLN02285 methionyl-tRNA formyltransferase
Probab=45.48 E-value=87 Score=30.12 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=21.0
Q ss_pred HHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 169 QFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 169 ~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
.+.+.+++.+||++++.++. ++.-+....+.-++.+|.
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHp 123 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHP 123 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEec
Confidence 34455667899999887542 222222222324677775
No 337
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.48 E-value=32 Score=29.74 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|+|++|-.+ ..++++|+++|.+.|++|.|+-..
T Consensus 2 ~~IL~IDNy----------DSFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 2 MMILLIDNY----------DSFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred ceEEEEECc----------cchHHHHHHHHHHcCCceEEEECC
Confidence 678888763 237999999999999999998766
No 338
>PRK11914 diacylglycerol kinase; Reviewed
Probab=45.46 E-value=87 Score=29.60 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=29.0
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.||+++|.. |. +..|...+....+.+.|.+.|+++.++.+..
T Consensus 8 ~~~~~iI~N--P~-sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 8 IGKVTVLTN--PL-SGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CceEEEEEC--CC-CCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 367888876 32 2233345567788999999999988876654
No 339
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=45.43 E-value=50 Score=31.01 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=29.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||++..- ..-|=.+.+.+|+.+|++.|+.|.++-.+...
T Consensus 1 m~ia~~gK------GGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 1 MKLAVYGK------GGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred CeEEEECC------CCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 78777652 22233455789999999999999999876655
No 340
>PRK06179 short chain dehydrogenase; Provisional
Probab=45.39 E-value=81 Score=28.91 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=24.0
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|.++|+. ..||.+ ..+++.|.++|++|.+++...
T Consensus 5 ~~vlVtG------asg~iG---~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTG------ASSGIG---RATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEec------CCCHHH---HHHHHHHHHCCCEEEEEeCCh
Confidence 4556663 446655 458889999999998887653
No 341
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=45.21 E-value=36 Score=31.10 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=27.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+.... ... .--+..|+++|++ +|+|+|+++..+.
T Consensus 1 M~ILlTNDD-----Gi~--a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDD-----GIT--SPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCC-----CCC--CHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 789888764 222 2237788899976 5799999987765
No 342
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.04 E-value=2.2e+02 Score=25.07 Aligned_cols=131 Identities=8% Similarity=-0.015 Sum_probs=67.6
Q ss_pred HHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhc--CcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC
Q 039338 330 HEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFG--HQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK 407 (493)
Q Consensus 330 l~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~--~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~ 407 (493)
...++.|.+.+ .+++++.... .+.+.++. ..+.+.... -....+..+|+++..+.. +.....+.+....|+
T Consensus 23 ~~ka~~Ll~~g--a~V~VIs~~~-~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d-~elN~~i~~~a~~~~ 95 (202)
T PRK06718 23 GRRAITLLKYG--AHIVVISPEL-TENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATND-PRVNEQVKEDLPENA 95 (202)
T ss_pred HHHHHHHHHCC--CeEEEEcCCC-CHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCC-HHHHHHHHHHHHhCC
Confidence 34445555543 4666776432 23333433 346554432 123456789998887633 444556666667788
Q ss_pred cEEecCCCCCcc----ceeeeCcceEEECC---C---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 408 PVMASRFPSIKG----TIVVDDEFGFMFAP---N---VESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 408 PvI~s~~~~~~~----e~v~~~~~G~~~~~---d---~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
+|-+.+.+...+ -++..+..-+-+.. + ...+.+.|++++...-+.+-+.....|+.+++.
T Consensus 96 lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 96 LFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred cEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHh
Confidence 888777655441 23334443333332 2 244555555544322233444555666666554
No 343
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=45.02 E-value=59 Score=26.85 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
...|....+.+|+..|++.|+.|.++......
T Consensus 10 ~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 10 GGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp TTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 66788889999999999999998887765544
No 344
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=44.74 E-value=50 Score=31.13 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=32.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+++.... ++...-.-.....++++|.+.||+|.++...
T Consensus 1 ~~v~v~~gg~--s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~ 41 (299)
T PRK14571 1 MRVALLMGGV--SREREISLRSGERVKKALEKLGYEVTVFDVD 41 (299)
T ss_pred CeEEEEeCCC--CCCccchHHHHHHHHHHHHHcCCeEEEEccC
Confidence 7899998854 3355555667889999999999999998643
No 345
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=44.50 E-value=46 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 102 MERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 102 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+...+..+.+.|.+.|++|.++.+....
T Consensus 13 aa~~~~~li~~L~~~g~~V~vv~T~~A~ 40 (182)
T PRK07313 13 AAYKAADLTSQLTKRGYQVTVLMTKAAT 40 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 3445789999999999999998876543
No 346
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=44.48 E-value=58 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
|||++.. |.+..=..+++.|.++| +|+.+.
T Consensus 1 m~iLVtG----------~~GfiGs~l~~~L~~~g-~V~~~~ 30 (299)
T PRK09987 1 MNILLFG----------KTGQVGWELQRALAPLG-NLIALD 30 (299)
T ss_pred CeEEEEC----------CCCHHHHHHHHHhhccC-CEEEec
Confidence 6776663 33444456888999999 665543
No 347
>PLN02427 UDP-apiose/xylose synthase
Probab=44.24 E-value=39 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=27.4
Q ss_pred CCCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC-CCEEEEEecC
Q 039338 78 QPSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARR-GHRVHIFTSP 126 (493)
Q Consensus 78 ~~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 126 (493)
+.+.++|||++. ||.+..=..|++.|.++ |++|.++...
T Consensus 9 ~~~~~~~~VlVT----------GgtGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 9 GKPIKPLTICMI----------GAGGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred CCcccCcEEEEE----------CCcchHHHHHHHHHHhcCCCEEEEEecC
Confidence 445667998866 34444455689999988 6999888643
No 348
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=44.18 E-value=14 Score=29.82 Aligned_cols=36 Identities=36% Similarity=0.352 Sum_probs=24.2
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
..+|||.||.. ++.-..|+++|.+.||+|.-+....
T Consensus 8 ~~~l~I~iIGa-----------GrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 8 AARLKIGIIGA-----------GRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ----EEEEECT-----------SCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCccEEEEECC-----------CHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45799999975 1223458999999999998876543
No 349
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=44.06 E-value=1.2e+02 Score=28.04 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=37.9
Q ss_pred cCcEEEecC-CCHH---HHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCCC
Q 039338 361 GHQVLVMGS-MSPA---ELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 361 ~~~V~~~g~-~~~~---~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
.++|.+.|. +|.+ ...+.+..||++|. +|..-.+...-+-+|...|.|+|.-+....
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t 242 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPT 242 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCC
Confidence 378888886 4543 45667788999887 443323333344568889999999876543
No 350
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=43.93 E-value=48 Score=35.15 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+.++||++|+++ |-....| +-.....|.++||+|+|++.....
T Consensus 367 ~~~~rvLv~spH-PDDevi~-----~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 367 PYPKRVIIFSPH-PDDDVIS-----MGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred cCCceEEEEEeC-CCchHhh-----hHHHHHHHHHCCCcEEEEEecCCc
Confidence 346899999984 5432222 233446778899999998876555
No 351
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=43.79 E-value=60 Score=28.30 Aligned_cols=40 Identities=8% Similarity=-0.059 Sum_probs=28.0
Q ss_pred eEEEEEeccCCCCCCCCchHHH-HHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERH-AHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~-~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||++|+.+- ..++.... +...++.+.+.|++|+++....
T Consensus 1 mkIl~I~GSp----r~~S~t~~l~~~~~~~l~~~g~ev~~idL~~ 41 (191)
T PRK10569 1 MRVITLAGSP----RFPSRSSALLEYAREWLNGLGVEVYHWNLQN 41 (191)
T ss_pred CEEEEEEcCC----CCCChHHHHHHHHHHHHHhCCCEEEEEEccC
Confidence 8999998852 44555544 4455667777899999987553
No 352
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=43.75 E-value=2e+02 Score=27.66 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.5
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
...|.+... ...|=.+.+..|+..|.++|+.|.|++.++..
T Consensus 56 ~~~igi~G~------~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGV------PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECC------CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 455666653 55778888999999999999999999987755
No 353
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=43.47 E-value=2.8e+02 Score=26.40 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=30.6
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+|+.+... ..-|--..+..|.+++.+.|+++.++.+....
T Consensus 150 ~V~vvGTd-----~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg 189 (339)
T COG3367 150 VVLVVGTD-----CAVGKRTTALELREAAREEGIKAGFVATGQTG 189 (339)
T ss_pred EEEEeccc-----cccchhHHHHHHHHHHHHhCCccceEecCcee
Confidence 56666653 44455667889999999999999999887655
No 354
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=43.38 E-value=40 Score=30.84 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=28.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||||+.... |=...-+..|+++|.+. |+|+|+.+..+.
T Consensus 1 M~ILlTNDD-------Gi~a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDD-------GIHAPGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCC-------CCCChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 789888764 21223478899999988 799999987766
No 355
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=43.30 E-value=77 Score=26.05 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=33.8
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+++.||++... ...|..+.+.-+++.|+..|+||+........
T Consensus 10 g~rprvlvak~------GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp 52 (143)
T COG2185 10 GARPRVLVAKL------GLDGHDRGAKVIARALADAGFEVINLGLFQTP 52 (143)
T ss_pred CCCceEEEecc------CccccccchHHHHHHHHhCCceEEecCCcCCH
Confidence 46778988875 46788888899999999999999876554433
No 356
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.27 E-value=96 Score=24.60 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.....-...++..|+..|++|..+....+.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~ 39 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTP 39 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 334444566777889999999988765444
No 357
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.08 E-value=34 Score=33.10 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..+|-.+.+..||.++.++|+.+.++|.+...
T Consensus 110 qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred cCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 66788888999999999999999999987654
No 358
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=42.96 E-value=49 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
-||++++.. .+.||-+.. +++.|.++|++|.|+.
T Consensus 61 ~~V~VlcG~----GNNGGDGlv---~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGP----GNNGGDGLV---AARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECC----CCCchhHHH---HHHHHHHCCCeEEEEE
Confidence 369999873 377776544 7899999999999998
No 359
>PRK06180 short chain dehydrogenase; Provisional
Probab=42.91 E-value=45 Score=30.87 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=24.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
+|..+|+. ..||.+.. +++.|.++|++|.++....
T Consensus 4 ~~~vlVtG------asggiG~~---la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITG------VSSGFGRA---LAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCEEEEec------CCChHHHH---HHHHHHhCcCEEEEEeCCH
Confidence 45556663 44666654 7888999999998887543
No 360
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=42.88 E-value=40 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=22.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
|||+++. ..|+.+ ..+++.|.++|++|+++..
T Consensus 1 m~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTG-------GSGYIG---SHTCVQLLQNGHDVVILDN 32 (338)
T ss_pred CeEEEEC-------CCChHH---HHHHHHHHHCCCeEEEEec
Confidence 6777663 234444 4588999999999998753
No 361
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=42.57 E-value=1.9e+02 Score=27.20 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=32.6
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.++++..++. +...|=...+..++..+.++|+.|.++......
T Consensus 32 ~~~~~i~i~G-----~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 32 GNAHRVGITG-----TPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCceEEEEEC-----CCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3466666664 255777888999999999999999999876544
No 362
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=42.55 E-value=72 Score=27.11 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=27.8
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
....+|++++.. .+.|| -...+++.|.++|++|+++.....
T Consensus 23 ~~~~~v~il~G~----GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~ 63 (169)
T PF03853_consen 23 PKGPRVLILCGP----GNNGG---DGLVAARHLANRGYNVTVYLVGPP 63 (169)
T ss_dssp CTT-EEEEEE-S----SHHHH---HHHHHHHHHHHTTCEEEEEEEESS
T ss_pred cCCCeEEEEECC----CCChH---HHHHHHHHHHHCCCeEEEEEEecc
Confidence 345679999862 24444 356689999999999999665443
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.48 E-value=35 Score=32.10 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=24.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||+++.. |.++ ..++..|++.||+|+++....
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECCh
Confidence 78888853 4444 347788888999999998643
No 364
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=42.41 E-value=85 Score=27.73 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=37.3
Q ss_pred hcCcEEEecC-CCHH---HHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCC
Q 039338 360 FGHQVLVMGS-MSPA---ELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPS 416 (493)
Q Consensus 360 l~~~V~~~g~-~~~~---~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~ 416 (493)
+.++|.+.|. +|.. +..+.+++||++|. +|..-.+...-+-+|...|.|+|.-+...
T Consensus 130 lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~ 192 (206)
T cd01410 130 LKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQP 192 (206)
T ss_pred cCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCC
Confidence 4588888887 4543 56667788999887 34322333333456778899998876543
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=42.30 E-value=41 Score=29.18 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=22.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
|||.++.-.| .-..++-.|++.||+|..+-....
T Consensus 1 M~I~ViGlGy-----------vGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGY-----------VGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--ST-----------THHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCc-----------chHHHHHHHHhCCCEEEEEeCChH
Confidence 8999997643 235688999999999999876543
No 366
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=42.30 E-value=76 Score=31.24 Aligned_cols=47 Identities=21% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 79 PSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 79 ~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
...++|+|..|+.. ...-|-...+.+|+.+|++.|+.|.++-.+...
T Consensus 99 ~~g~~~~vI~v~n~----KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 99 RGGEHLQVIAVTNF----KGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred CCCCCceEEEEEcc----CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 34567887777652 133344555788999999999999999776543
No 367
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=42.10 E-value=34 Score=32.29 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=23.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
|||+++.. |+++. .++..|++.||+|++++.
T Consensus 1 mkI~IiG~--------G~iG~---~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVGG---TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHHH---HHHHHHHHCCCceEEEec
Confidence 78988854 44443 377788889999999986
No 368
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=42.04 E-value=52 Score=31.60 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=32.5
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
|++|||+++..... .+.--.-.....++++|.+.||+|..+.....
T Consensus 1 m~~~~i~vl~GG~S--~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~ 46 (333)
T PRK01966 1 MMKMRVALLFGGRS--AEHEVSLVSAKSVLKALDKEKYEVVPIGITKD 46 (333)
T ss_pred CCCcEEEEEeCCCC--CcchhhHHHHHHHHHHhcccCCEEEEEEECCC
Confidence 35789999987431 23222225677899999999999998876553
No 369
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=41.74 E-value=3.3e+02 Score=26.25 Aligned_cols=97 Identities=6% Similarity=-0.034 Sum_probs=48.3
Q ss_pred HHHHHcCEEEeCCC-CCCCCChHHHHHHHcCCcEEecCCCCCcccee--eeCcceEEECCCHHHHHHHHHHHHHcCcHHH
Q 039338 377 AFYNAIDIFVNPTL-RPQGLDLTLMEAMMSGKPVMASRFPSIKGTIV--VDDEFGFMFAPNVESLHKTLEAAVSEGPMRL 453 (493)
Q Consensus 377 ~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v--~~~~~G~~~~~d~~~l~~~i~~ll~~~~~~~ 453 (493)
.+...+|+++..|. .....|....|.+.--.+-+.-|..--+ ++- ....+-.++ |.++|.+.+.+-+ +.+
T Consensus 222 ~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR-dId~v~~~~~v~Ly--~iDdL~~i~~~n~----~~R 294 (338)
T PRK00676 222 SFQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR-TFPWSETPFPHRYL--DMDFISEWVQKHL----QCR 294 (338)
T ss_pred hcccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC-CCccccccCCcEEE--EhHHHHHHHHHHH----HHH
Confidence 66789999998521 1234555556655432212444543222 321 112222333 6677776665443 334
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Q 039338 454 AQRGEACRQYAASMFTANKMALAYERLFLCIKN 486 (493)
Q Consensus 454 ~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i~~ 486 (493)
++...++...+ +..+.++-+.|++-..
T Consensus 295 ~~~~~~ae~iI------~~~~~~~~~~~~~~~~ 321 (338)
T PRK00676 295 KEVNNKHKLSL------REAAYKQWESYEKKLS 321 (338)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHh
Confidence 44444444444 4456666666665444
No 370
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=41.66 E-value=57 Score=31.46 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=22.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||++.. ..|+.+ ..+++.|.++||+|+++...
T Consensus 5 k~ilItG-------atG~IG---~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 5 KKVLVTG-------HTGFKG---SWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CEEEEEC-------CCChhH---HHHHHHHHHCCCEEEEEeCC
Confidence 5565553 335555 45889999999999887643
No 371
>PRK13054 lipid kinase; Reviewed
Probab=41.58 E-value=1.3e+02 Score=28.46 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=28.5
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.||+++|.. | . +|.......+.+.|.+.|+++.+.......
T Consensus 3 ~~~~~~i~N--~---~-~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~ 43 (300)
T PRK13054 3 FPKSLLILN--G---K-SAGNEELREAVGLLREEGHTLHVRVTWEKG 43 (300)
T ss_pred CceEEEEEC--C---C-ccchHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 457777766 2 2 334566778888999999998886665433
No 372
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=41.19 E-value=49 Score=31.37 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=27.7
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..|+.+.+++.|++++.++|++|+|+-.....
T Consensus 85 ~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs 116 (345)
T COG0429 85 EGSSNSPYARGLMRALSRRGWLVVVFHFRGCS 116 (345)
T ss_pred CCCCcCHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 66777889999999999999999999876655
No 373
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=41.16 E-value=74 Score=29.95 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=30.5
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+.+|||.-|+. ...-|-...+.+|+-+|++.|+.|.++-.+...
T Consensus 1 ~~~~~~iai~~-----KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~ 44 (295)
T PRK13234 1 MSKLRQIAFYG-----KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 44 (295)
T ss_pred CCcceEEEEEC-----CCCccHHHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 35787655542 122344455789999999999999999766544
No 374
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=41.12 E-value=91 Score=27.76 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=19.5
Q ss_pred cChHHHHHHHHHHHhhCCCeEEEEEeC
Q 039338 324 KGHPLLHEAFSKLMVKYPDVYLIVAGS 350 (493)
Q Consensus 324 Kg~~~ll~a~~~l~~~~~~~~l~i~G~ 350 (493)
-|++.++.++++++.+.+++-++++|-
T Consensus 156 AGiHRLl~~l~r~~~~~~~~lIVvAGM 182 (254)
T COG1691 156 AGIHRLLSALKRLKIEDADVLIVVAGM 182 (254)
T ss_pred chHHhhhhHHHHHHhhCCCeEEEEccc
Confidence 467777888887777777777777773
No 375
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.03 E-value=84 Score=23.74 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=28.1
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
+..||++++.. . -+.+..+..+-+.+.++|.++.+......
T Consensus 2 ~~~~ILl~C~~-----G-~sSS~l~~k~~~~~~~~gi~~~v~a~~~~ 42 (95)
T TIGR00853 2 NETNILLLCAA-----G-MSTSLLVNKMNKAAEEYGVPVKIAAGSYG 42 (95)
T ss_pred CccEEEEECCC-----c-hhHHHHHHHHHHHHHHCCCcEEEEEecHH
Confidence 34689999862 2 23445566777788889999888776543
No 376
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=41.03 E-value=55 Score=28.70 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHh-CCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALAR-RGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 126 (493)
|||+++..+ ..|-....+..+++.+.+ .|.+|.++...
T Consensus 2 ~kilIvy~S-----~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYS-----MYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcC-----CCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 589998763 335566667778888887 89999998864
No 377
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=40.96 E-value=1.7e+02 Score=28.57 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=34.6
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
...+|+++-|+. ....|-.+.+..+++.|.++|+.|-++--...
T Consensus 201 ~~~~~~~~~~~g-----~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 201 TTGAPPLLGVVG-----YSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred cCCCccEEEEec-----CCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 344678777775 26688899999999999999999998875443
No 378
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=40.91 E-value=1e+02 Score=29.63 Aligned_cols=42 Identities=17% Similarity=0.106 Sum_probs=33.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||++++.. ....|+...+..+.+.+.+.|++|.-+......
T Consensus 1 ~ri~Il~sG----G~apG~N~~i~~~v~~~~~~g~~v~G~~~G~~G 42 (338)
T cd00363 1 KKIGVLTSG----GDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAG 42 (338)
T ss_pred CeEEEEccC----CCchhHHHHHHHHHHHHHHCCCEEEEEecChHH
Confidence 689999984 345678888999999999999988888765554
No 379
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.85 E-value=55 Score=28.68 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCeEEEEEeCCCcHHHH---hhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcC
Q 039338 330 HEAFSKLMVKYPDVYLIVAGSGPWEQRY---KDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSG 406 (493)
Q Consensus 330 l~a~~~l~~~~~~~~l~i~G~g~~~~~~---~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G 406 (493)
+++++.+++++|++. +=+|.--..+.. .+.+-+..+.+..+ +++.++-.+.++.+.|.. ..|.=+.+|+.+|
T Consensus 47 ~~~I~~l~~~~p~~~-vGAGTV~~~e~a~~a~~aGA~FivSP~~~-~~v~~~~~~~~i~~iPG~---~TptEi~~A~~~G 121 (196)
T PF01081_consen 47 LEAIEALRKEFPDLL-VGAGTVLTAEQAEAAIAAGAQFIVSPGFD-PEVIEYAREYGIPYIPGV---MTPTEIMQALEAG 121 (196)
T ss_dssp HHHHHHHHHHHTTSE-EEEES--SHHHHHHHHHHT-SEEEESS---HHHHHHHHHHTSEEEEEE---SSHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCe-eEEEeccCHHHHHHHHHcCCCEEECCCCC-HHHHHHHHHcCCcccCCc---CCHHHHHHHHHCC
Confidence 455566666666632 222322222222 23334444544443 566666666666666652 2344556666666
Q ss_pred CcEE
Q 039338 407 KPVM 410 (493)
Q Consensus 407 ~PvI 410 (493)
..+|
T Consensus 122 ~~~v 125 (196)
T PF01081_consen 122 ADIV 125 (196)
T ss_dssp -SEE
T ss_pred CCEE
Confidence 6554
No 380
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=40.68 E-value=82 Score=24.48 Aligned_cols=43 Identities=23% Similarity=0.145 Sum_probs=29.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC---CEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRG---HRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G---~~V~v~~~~~~~ 129 (493)
|||+++...-| ...........++......| ++|.|+.....-
T Consensus 1 k~v~~i~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv 46 (122)
T PF02635_consen 1 KKVFFIVTSGP---YDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGV 46 (122)
T ss_dssp EEEEEEE-S-T---TTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGG
T ss_pred CEEEEEecCCC---CCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHH
Confidence 68888887533 22333677888889999999 999999876544
No 381
>PRK06101 short chain dehydrogenase; Provisional
Probab=40.61 E-value=49 Score=29.78 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=24.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|+.++|+. ..||.+. .+++.|.++|++|.++...
T Consensus 1 ~~~vlItG------as~giG~---~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 1 MTAVLITG------ATSGIGK---QLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CcEEEEEc------CCcHHHH---HHHHHHHhCCCEEEEEECC
Confidence 45666764 4466664 5889999999998887653
No 382
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=40.57 E-value=2.3e+02 Score=28.35 Aligned_cols=101 Identities=13% Similarity=0.194 Sum_probs=58.4
Q ss_pred EEEecccc-cccChHHHHHH-HHHHHhhCCCeEEEEEeCCCcHHH--Hh-------------hhcC--------------
Q 039338 314 LGVAGRLV-KDKGHPLLHEA-FSKLMVKYPDVYLIVAGSGPWEQR--YK-------------DFGH-------------- 362 (493)
Q Consensus 314 i~~~Gr~~-~~Kg~~~ll~a-~~~l~~~~~~~~l~i~G~g~~~~~--~~-------------~l~~-------------- 362 (493)
|+..|..+ ...|-+-++.+ +..|++..|++.+.|....|.... +. +...
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 82 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRR 82 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHHHh
Confidence 34556554 36777766655 456777889999999987665433 00 0000
Q ss_pred ---------cEEEecC-----C--CHHHHHHHHHHcCEEEeCC--CCCCCCChH----HHHHHHcCCcEEecCC
Q 039338 363 ---------QVLVMGS-----M--SPAELRAFYNAIDIFVNPT--LRPQGLDLT----LMEAMMSGKPVMASRF 414 (493)
Q Consensus 363 ---------~V~~~g~-----~--~~~~~~~~~~~adv~v~ps--~~~eg~~~~----~~EAm~~G~PvI~s~~ 414 (493)
+|.-.|. + ...++...+++||++|.-. ...+.+|.. ++-|..+|+|++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 83 RYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred hhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 0111111 0 1236677899999999843 111222322 4567889999988753
No 383
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=40.51 E-value=2.7e+02 Score=25.90 Aligned_cols=85 Identities=8% Similarity=0.146 Sum_probs=48.4
Q ss_pred hcCcEEEecC-CCHH---HHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC
Q 039338 360 FGHQVLVMGS-MSPA---ELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP 433 (493)
Q Consensus 360 l~~~V~~~g~-~~~~---~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~ 433 (493)
+.++|.+.|. +|.+ ...+.++.||++|. +|..-.+...-+..|...|.|+|.-+.+... ..+....+.+..
T Consensus 174 lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~---~~~~~~d~~i~~ 250 (271)
T PTZ00409 174 FKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTY---ITNRISDYHVRA 250 (271)
T ss_pred ccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCC---CCCccccEEEEC
Confidence 3477777775 4643 44567789999887 3433223222334577889999888765432 111223455554
Q ss_pred CHHHHHHHHHHHHHc
Q 039338 434 NVESLHKTLEAAVSE 448 (493)
Q Consensus 434 d~~~l~~~i~~ll~~ 448 (493)
+.+++.. +..++..
T Consensus 251 ~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 251 KFSELAQ-ISDILKG 264 (271)
T ss_pred cHHHHHH-HHHHhcc
Confidence 5666664 3344443
No 384
>PRK06924 short chain dehydrogenase; Provisional
Probab=40.30 E-value=45 Score=30.16 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=24.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
||.++|+. ..||.+. .+++.|.++|++|.+++..
T Consensus 1 ~k~vlItG------asggiG~---~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 1 MRYVIITG------TSQGLGE---AIANQLLEKGTHVISISRT 34 (251)
T ss_pred CcEEEEec------CCchHHH---HHHHHHHhcCCEEEEEeCC
Confidence 56566653 3456554 5899999999999887654
No 385
>PRK05246 glutathione synthetase; Provisional
Probab=40.28 E-value=31 Score=32.88 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=32.3
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.|||+|+.... ............|+++-+++||+|.++++..-.
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~ 44 (316)
T PRK05246 1 MMKVAFQMDPI---ESINIKKDSTFAMMLEAQRRGHELFYYEPDDLS 44 (316)
T ss_pred CceEEEEeCCH---HHCCCCCChHHHHHHHHHHcCCEEEEEehhhcE
Confidence 38999999733 233333344677999999999999999987655
No 386
>PRK05993 short chain dehydrogenase; Provisional
Probab=40.11 E-value=53 Score=30.43 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=24.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
+|.++|+. ..||.+.. +++.|.++|++|.++....
T Consensus 4 ~k~vlItG------asggiG~~---la~~l~~~G~~Vi~~~r~~ 38 (277)
T PRK05993 4 KRSILITG------CSSGIGAY---CARALQSDGWRVFATCRKE 38 (277)
T ss_pred CCEEEEeC------CCcHHHHH---HHHHHHHCCCEEEEEECCH
Confidence 45666664 44666654 7888999999998876543
No 387
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=40.10 E-value=36 Score=38.42 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=37.0
Q ss_pred hhhcccccccCCCCCceEEEEEeccCCCCCCCCchH------HHHHHHHHHHHhCCCEEE
Q 039338 68 AWNLLSFLQNQPSKFTLKIAVFSRKWPISTTPGGME------RHAHTLHVALARRGHRVH 121 (493)
Q Consensus 68 ~~~~~~~~~~~~~~~~mkIl~v~~~~p~~~~~gG~~------~~~~~l~~~L~~~G~~V~ 121 (493)
.|-+|. ..+....||++|-.+||++...=|.. ..+.++.+.|++.|++|.
T Consensus 238 ~W~~LR----~kpN~eKKVAII~yNyPpg~~nIGaA~gLDvp~Sl~~IL~~Lke~GY~v~ 293 (1098)
T PF02514_consen 238 RWARLR----RKPNAEKKVAIIYYNYPPGKGNIGAAAGLDVPESLVNILKALKEEGYDVG 293 (1098)
T ss_pred HHHHHh----cccccccEEEEEEecCCCCCCcccccCCCCcHHHHHHHHHHHHHCCCCCC
Confidence 676664 23444578999999999864333333 568899999999999995
No 388
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=40.04 E-value=2.1e+02 Score=24.71 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=48.6
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC-cHHHHhhh-c--CcEEEecCCCHHHHHHHHHHc--CEE
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP-WEQRYKDF-G--HQVLVMGSMSPAELRAFYNAI--DIF 385 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~~~~l-~--~~V~~~g~~~~~~~~~~~~~a--dv~ 385 (493)
.+-+...+.++ ...+...++++++++|+.++++....+ ..+..++. . ..+.+.+.=....+..+++.. |++
T Consensus 23 ~iWiHa~SvGE---~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 23 LIWIHAASVGE---VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp -EEEE-SSHHH---HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred cEEEEECCHHH---HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 45557666654 345556666777788899998877533 33334443 2 334554432334566677665 787
Q ss_pred EeCCCCCCCCChHHHHHHHcCCcEEecC
Q 039338 386 VNPTLRPQGLDLTLMEAMMSGKPVMASR 413 (493)
Q Consensus 386 v~ps~~~eg~~~~~~EAm~~G~PvI~s~ 413 (493)
|.-- .|=+|+-+.+|-..|+|++.-+
T Consensus 100 i~~E--tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 100 IWVE--TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp EEES------HHHHHH-----S-EEEEE
T ss_pred EEEc--cccCHHHHHHHhhcCCCEEEEe
Confidence 7654 5889999999999999998875
No 389
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=40.03 E-value=77 Score=18.45 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=19.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEE
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVH 121 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 121 (493)
|||+++.-.--...-..--..-...|.+.+.+.|.+|.
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNVD 38 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCCC
Confidence 78888875210000011122335568888899998874
No 390
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=39.90 E-value=95 Score=27.26 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=23.7
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
+-||++.+.. ...+..+ ...++..|...||+|+-+..
T Consensus 82 ~~~vl~~~~~----gd~H~lG--~~~v~~~l~~~G~~vi~lG~ 118 (201)
T cd02070 82 KGKVVIGTVE----GDIHDIG--KNLVATMLEANGFEVIDLGR 118 (201)
T ss_pred CCeEEEEecC----CccchHH--HHHHHHHHHHCCCEEEECCC
Confidence 4578777752 1333333 55667888899999965553
No 391
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=39.79 E-value=72 Score=29.05 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=48.0
Q ss_pred EEecccccccChHHHHHHHHHHHhhCCCeEEEEEeC-------CCcHHHHh---hhcCcEEEecCC--CHHHHHHHHHHc
Q 039338 315 GVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGS-------GPWEQRYK---DFGHQVLVMGSM--SPAELRAFYNAI 382 (493)
Q Consensus 315 ~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-------g~~~~~~~---~l~~~V~~~g~~--~~~~~~~~~~~a 382 (493)
+|+|-+.-.-|...+.+.+.+|++++ ++-|+|+.. |-..+.++ +.+-.|.-.|.- ++.|+.+++...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~~ 79 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDKE 79 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH-
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhcC
Confidence 46777777788999999999999886 567788742 32333333 445666666643 668999999999
Q ss_pred CEEEeCCCCCCC
Q 039338 383 DIFVNPTLRPQG 394 (493)
Q Consensus 383 dv~v~ps~~~eg 394 (493)
+-+|=|..++++
T Consensus 80 ~~ilRPaN~p~~ 91 (253)
T PF13277_consen 80 PRILRPANYPPG 91 (253)
T ss_dssp SSEE--TTS-TT
T ss_pred CCcEECCCCCCC
Confidence 988888765554
No 392
>PRK08177 short chain dehydrogenase; Provisional
Probab=39.61 E-value=50 Score=29.36 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=25.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
||.++|+. ..||.+. .+++.|.++|++|.+++.....
T Consensus 1 ~k~vlItG------~sg~iG~---~la~~l~~~G~~V~~~~r~~~~ 37 (225)
T PRK08177 1 KRTALIIG------ASRGLGL---GLVDRLLERGWQVTATVRGPQQ 37 (225)
T ss_pred CCEEEEeC------CCchHHH---HHHHHHHhCCCEEEEEeCCCcc
Confidence 56666664 3456554 4788999999999888765433
No 393
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=39.37 E-value=67 Score=29.63 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=29.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|+|++.. . ..-|=.+.+.+|+.+|+++|+.|.++-.+...
T Consensus 1 ~~i~v~g-K-----GGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 1 MVLAVYG-K-----GGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred CEEEEec-C-----CCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 6777773 2 33455566789999999999999999776543
No 394
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=39.29 E-value=50 Score=26.10 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=30.8
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+++.... +.+.-=.-....+++++|.+.+|+|..+......
T Consensus 1 m~v~vlfGG~--S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 1 MRVAVLFGGR--SSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEEETS--STTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTS
T ss_pred CeEEEEeccC--chhHHHHHHHHHHHHHHHhhhcceEEEEeecCCC
Confidence 8999998743 1222223344678899999999999988766544
No 395
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=39.25 E-value=66 Score=30.77 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=16.7
Q ss_pred chHHHHHHhcCCCCcEEEeC
Q 039338 166 GWEQFDEENQREPFDVVHSE 185 (493)
Q Consensus 166 ~~~~~~~~~~~~~~DiI~~~ 185 (493)
....+...+++.+||++++-
T Consensus 68 a~~~i~~mv~~~~pD~viaG 87 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAG 87 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEc
Confidence 45778888889999999985
No 396
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=39.21 E-value=69 Score=29.90 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=55.4
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE 157 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
..++|||+++... + +.-+..+.++..... .+|.++.+.... -.... ...+.+.... ...
T Consensus 81 ~~~~~ki~vl~Sg-------~--g~nl~~l~~~~~~g~l~~~i~~visn~~~--~~~~A-------~~~gIp~~~~-~~~ 141 (280)
T TIGR00655 81 ADKLKRVAILVSK-------E--DHCLGDLLWRWYSGELDAEIALVISNHED--LRSLV-------ERFGIPFHYI-PAT 141 (280)
T ss_pred CCCCcEEEEEEcC-------C--ChhHHHHHHHHHcCCCCcEEEEEEEcChh--HHHHH-------HHhCCCEEEc-CCC
Confidence 3457899999852 2 334677888776543 477766665544 11111 1122222222 211
Q ss_pred CCccccccchHHHHHHhcCCCCcEEEeCccc--hhHHhhhccCcEEEEecc
Q 039338 158 ADKWRYSKGWEQFDEENQREPFDVVHSESVA--LPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~DiI~~~~~~--~~~~~~~~~p~~v~~~h~ 206 (493)
. ......-..+.+.+++.++|+|.+.++. ++.-+....+..++.+|.
T Consensus 142 ~--~~~~~~e~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHp 190 (280)
T TIGR00655 142 K--DNRVEHEKRQLELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHH 190 (280)
T ss_pred C--cchhhhHHHHHHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecC
Confidence 1 1111223456666778899999988652 222222333435777775
No 397
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=38.92 E-value=2.4e+02 Score=23.78 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=57.9
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCC-CCcc-------ccccchHH
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGE-ADKW-------RYSKGWEQ 169 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~ 169 (493)
..+.....+..++..|..+|+.|.=+.................. .-.....+.+.... +... ....+-..
T Consensus 8 ~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~--dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A~~~ 85 (159)
T PF10649_consen 8 DGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLR--DLPSGRRIRISQDLGPGSRGCRLDPGALAEASAA 85 (159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEE--ECCCCCEEEEeeccCCCCcccccCHHHHHHHHHH
Confidence 45778999999999999999999877765422001100000000 01122222222211 1111 12223334
Q ss_pred HHHHhcCCCCcEEEeCcc------------chhHHhhhccCcEEEEecc
Q 039338 170 FDEENQREPFDVVHSESV------------ALPHWLARNVTNLAVSWHG 206 (493)
Q Consensus 170 ~~~~~~~~~~DiI~~~~~------------~~~~~~~~~~p~~v~~~h~ 206 (493)
+...+ ...+|+++++-. .+...+...+| ++..+..
T Consensus 86 l~~al-~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giP-VLt~V~~ 132 (159)
T PF10649_consen 86 LRRAL-AEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIP-VLTAVPP 132 (159)
T ss_pred HHHHH-hcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCC-EEEEECH
Confidence 44555 667999999843 35556777889 8877765
No 398
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=38.79 E-value=64 Score=29.96 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+...+||++. ||++-.-..|++.|..+||+|.++-.....
T Consensus 24 p~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn~ftg 63 (350)
T KOG1429|consen 24 PSQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDNYFTG 63 (350)
T ss_pred CCCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEeccccc
Confidence 4456899887 455556778999999999999998765444
No 399
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=38.76 E-value=1.1e+02 Score=30.84 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=23.3
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
.||||++.. || +-..++..|++.|++|.++..
T Consensus 2 ~~kVLvlG~--------G~---re~al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGS--------GG---REDAIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECC--------cH---HHHHHHHHHHhCCCeEEEEEC
Confidence 589999853 44 345688888888988777744
No 400
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=38.71 E-value=42 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=13.3
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 039338 15 WQSNLCITLFFIVIFTIPAL 34 (493)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (493)
.+.++|.+|+|++|..|-..
T Consensus 31 lfvnfclilicllli~iiv~ 50 (52)
T PF04272_consen 31 LFVNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888887766655443
No 401
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=38.60 E-value=43 Score=20.88 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=14.2
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 039338 15 WQSNLCITLFFIVIFTIPALF 35 (493)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (493)
.+.++|.+|+|++|.+|-..+
T Consensus 31 lfvnf~lilicllli~iivml 51 (52)
T TIGR01294 31 LFINFCLILICLLLICIIVML 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566788888877766665443
No 402
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=38.22 E-value=1.3e+02 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=24.1
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEE
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVH 121 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~ 121 (493)
+..+++++. ..||...-+.+|.++|.+. ++..
T Consensus 37 ~s~~~lVvl-------GSGGHT~EMlrLl~~l~~~-y~~r 68 (211)
T KOG3339|consen 37 KSLSTLVVL-------GSGGHTGEMLRLLEALQDL-YSPR 68 (211)
T ss_pred CcceEEEEE-------cCCCcHHHHHHHHHHHHhh-cCce
Confidence 345688886 4588888899999999776 4433
No 403
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=38.22 E-value=1e+02 Score=27.52 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHH-HHHHHhCCCEEEEEecC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTL-HVALARRGHRVHIFTSP 126 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l-~~~L~~~G~~V~v~~~~ 126 (493)
.++.|||++|+.+. ..|-..+.+... .+.+.+.|.+|.++...
T Consensus 23 ~~~~~kI~~I~GSl----R~~S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 23 KPHIPRILLLYGSL----RERSYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred CCCCCEEEEEECCC----CCcchHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 56779999999864 445555544444 44445479999998754
No 404
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.18 E-value=66 Score=30.71 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=30.2
Q ss_pred eEEEEEeccCCCCCCCCchHH--HHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMER--HAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~--~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||++++ ..||+++ ....++-.|++.|..|.+++..+.+
T Consensus 2 ~riv~f~-------GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFT-------GKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEe-------cCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 6788888 4478877 5666778899999888888776655
No 405
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=38.06 E-value=3.2e+02 Score=25.00 Aligned_cols=77 Identities=23% Similarity=0.179 Sum_probs=48.9
Q ss_pred CcEEEecCCCHHHHHHHHHHcCEEEeCCCC--CCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECCCHHHHH
Q 039338 362 HQVLVMGSMSPAELRAFYNAIDIFVNPTLR--PQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLH 439 (493)
Q Consensus 362 ~~V~~~g~~~~~~~~~~~~~adv~v~ps~~--~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~ 439 (493)
+-|-..|+.+.+.=.+++++.++=++-+.. ..|+.-++--|..+|+|||.-+-+..+. + .-.+. +.+++.
T Consensus 169 ~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~-----~--~~~~~-~~~e~~ 240 (248)
T PRK08057 169 EIIALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPY-----A--DREFE-DVAELV 240 (248)
T ss_pred hEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCC-----C--CcccC-CHHHHH
Confidence 445677888877667788776553332322 2246678888999999999987665431 1 01122 677777
Q ss_pred HHHHHHH
Q 039338 440 KTLEAAV 446 (493)
Q Consensus 440 ~~i~~ll 446 (493)
+.+.+.+
T Consensus 241 ~~l~~~~ 247 (248)
T PRK08057 241 AWLRHLL 247 (248)
T ss_pred HHHHHhh
Confidence 7776543
No 406
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=38.01 E-value=2.6e+02 Score=27.17 Aligned_cols=112 Identities=11% Similarity=0.118 Sum_probs=65.1
Q ss_pred cEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCC-
Q 039338 311 SLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPT- 389 (493)
Q Consensus 311 ~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps- 389 (493)
.+.|+..|.. +...++|...|.+++-++ -|+. +..+-+++.+.+.+..+..+.++.--
T Consensus 230 dvtIia~G~~-----v~~Al~Aa~~L~~~GI~v--~VId--------------~~~ikPlD~~~l~~~~~~t~~vvtvEE 288 (356)
T PLN02683 230 DVTIVAFSKM-----VGYALKAAEILAKEGISA--EVIN--------------LRSIRPLDRDTINASVRKTNRLVTVEE 288 (356)
T ss_pred CEEEEEccHH-----HHHHHHHHHHHHhcCCCE--EEEE--------------CCCCCccCHHHHHHHHhhcCeEEEEeC
Confidence 3777777764 466778888776653333 3332 23445567788888998888776522
Q ss_pred -CCCCCCChHHHHHHHcC------CcEEecCCCCCc---cceeeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 390 -LRPQGLDLTLMEAMMSG------KPVMASRFPSIK---GTIVVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 390 -~~~eg~~~~~~EAm~~G------~PvI~s~~~~~~---~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
....|+|-.+.|.++-. .|+.--.....+ ...++ -+.+ ++++.+.+++.+++..
T Consensus 289 ~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le----~~~~-p~~~~i~~a~~~~~~~ 352 (356)
T PLN02683 289 GWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLE----RLAL-PQVEDIVRAAKRACYR 352 (356)
T ss_pred CCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHH----HhhC-CCHHHHHHHHHHHHHh
Confidence 12357888888888654 355433211111 00110 0111 2778888888888754
No 407
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=37.93 E-value=1.2e+02 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHh-CCCEEEEEecCCCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALAR-RGHRVHIFTSPVDN 129 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~ 129 (493)
+.||++.|+.. ...-|-...+.+|+.+|++ .|++|.++-.....
T Consensus 33 ~~~~vi~v~s~----kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 33 KNNNLIMVTSS----LPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CCCeEEEEECC----CCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 45776666651 2455667778899999997 69999998766543
No 408
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=37.77 E-value=1.4e+02 Score=31.94 Aligned_cols=81 Identities=5% Similarity=-0.036 Sum_probs=50.1
Q ss_pred EEEecCCCHHHHHHHHHHcCEEEeCCC-CCCCCChHHHHHHHcC------CcEEecCCCCCccceeeeCcceEEECC---
Q 039338 364 VLVMGSMSPAELRAFYNAIDIFVNPTL-RPQGLDLTLMEAMMSG------KPVMASRFPSIKGTIVVDDEFGFMFAP--- 433 (493)
Q Consensus 364 V~~~g~~~~~~~~~~~~~adv~v~ps~-~~eg~~~~~~EAm~~G------~PvI~s~~~~~~~e~v~~~~~G~~~~~--- 433 (493)
..++-+++.+-+.++.+..+.+|.--- ...|+|-.+.|.++-. +||... |++++.+.++....+...
T Consensus 601 lr~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v~~i---Gipd~F~~~G~~~~ll~~~GL 677 (701)
T PLN02225 601 ARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKWRPI---VLPDGYIEEASPREQLALAGL 677 (701)
T ss_pred cCCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcEEEE---ecCCcCcCCCCHHHHHHHhCc
Confidence 345666787888899999988776321 1268899999998765 344322 344345555443333322
Q ss_pred CHHHHHHHHHHHHH
Q 039338 434 NVESLHKTLEAAVS 447 (493)
Q Consensus 434 d~~~l~~~i~~ll~ 447 (493)
|++.+++.+.+++.
T Consensus 678 dae~I~~~i~~~l~ 691 (701)
T PLN02225 678 TGHHIAATALSLLG 691 (701)
T ss_pred CHHHHHHHHHHHHh
Confidence 66777777766663
No 409
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=37.73 E-value=42 Score=37.15 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=26.0
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
....||++|.. .++| +..|..|+++||+|+++-..
T Consensus 381 ~tgKKVaVVGa------GPAG-----LsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGL------GPAG-----FSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECc------CHHH-----HHHHHHHHhCCCeEEEEccc
Confidence 45678999975 3344 34778888899999999754
No 410
>PHA00451 protein kinase
Probab=37.60 E-value=68 Score=29.35 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=26.6
Q ss_pred cCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 405 SGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 405 ~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
.|+|+|+-++.-..+ .+.+.| |+-||++|...++.+..+
T Consensus 205 ~g~p~ITDPVSFS~d---r~re~G--F~ldPd~LiaEvEaia~~ 243 (362)
T PHA00451 205 DGVPYITDPVSFSHD---REREPG--FPLDPDELIAEVEAIANQ 243 (362)
T ss_pred CCCeEecCCccccCc---cccCCC--CCCCHHHHHHHHHHHHHH
Confidence 488999777654432 334556 555889999988887654
No 411
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=37.46 E-value=79 Score=27.83 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=31.1
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.-+|++++.. .+.||-+.. .++.|...|++|+|+......
T Consensus 49 ~~~v~vlcG~----GnNGGDG~V---aAR~L~~~G~~V~v~~~~~~~ 88 (203)
T COG0062 49 ARRVLVLCGP----GNNGGDGLV---AARHLKAAGYAVTVLLLGDPK 88 (203)
T ss_pred CCEEEEEECC----CCccHHHHH---HHHHHHhCCCceEEEEeCCCC
Confidence 4579999972 377776654 789999999999999976555
No 412
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=37.42 E-value=70 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=23.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||++|.- +..-..+++.|.+.||+|.++...
T Consensus 2 ~~Ig~IGl-----------G~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGL-----------GNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE-------------SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEch-----------HHHHHHHHHHHHhcCCeEEeeccc
Confidence 67888853 334566899999999999988644
No 413
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=37.37 E-value=48 Score=31.27 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=26.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||++++.+- . ......+.+++.++||+|.++....
T Consensus 1 m~~~i~~~~~------s--~~s~~~~~~a~~~~g~~v~~i~~~~ 36 (300)
T PRK10446 1 MKIAILSRDG------T--LYSCKRLREAAIQRGHLVEILDPLS 36 (300)
T ss_pred CeEEEEecCC------c--chhHHHHHHHHHHcCCeEEEEehHH
Confidence 7899998631 1 1235679999999999999997553
No 414
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=37.23 E-value=3e+02 Score=24.52 Aligned_cols=148 Identities=11% Similarity=0.188 Sum_probs=84.3
Q ss_pred EEEEeccccc--ccChHHHHHHHHHHHhhCCCeEEEE-EeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCC
Q 039338 313 VLGVAGRLVK--DKGHPLLHEAFSKLMVKYPDVYLIV-AGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 313 ~i~~~Gr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~i-~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps 389 (493)
.++.+|.... ..|+..+...+-.+.++. +.+.++ .|.-+.. ++......+|-++..++.+.++..++..-+.
T Consensus 86 liil~Gd~Q~~~~~gqyel~~~~Ld~a~e~-g~~~IyTLGGy~vG----kl~eep~VlGA~ts~eLi~~lke~gV~fr~~ 160 (258)
T COG2047 86 LIILVGDTQATSSEGQYELTGKILDIAKEF-GARMIYTLGGYGVG----KLVEEPRVLGAVTSKELIEELKEHGVEFRSG 160 (258)
T ss_pred EEEEeccccccCcchhHHHHHHHHHHHHHc-CCcEEEEecCcccC----cccCCceeEEecCCHHHHHHHHHcCeEeccC
Confidence 4446787643 567777776666666654 333333 3431111 2335667899999999999999998877543
Q ss_pred CCCCCC-ChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHh
Q 039338 390 LRPQGL-DLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAASM 467 (493)
Q Consensus 390 ~~~eg~-~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 467 (493)
|+- |++-.-.+..| ....-|+.+--+-....|++++| ...+..+.+.+++.- .-....+-++ +++
T Consensus 161 ---epgGgIVGasGLllg----~g~l~gm~gaCLMGeT~GY~vDpkaAkaVL~vl~k~lgi-Eid~~~Le~R----Ake- 227 (258)
T COG2047 161 ---EPGGGIVGASGLLLG----FGELRGMDGACLMGETPGYLVDPKAAKAVLEVLCKMLGI-EIDMEALEER----AKE- 227 (258)
T ss_pred ---CCCCceechhhhhhh----hhhhcCCCceeeccCCCccccChHHHHHHHHHHHHHhCc-eecHHHHHHH----HHH-
Confidence 332 33322222222 22333333222344557999998 888888888888764 2222333222 322
Q ss_pred cCHHHHHHHHHHH
Q 039338 468 FTANKMALAYERL 480 (493)
Q Consensus 468 fs~~~~~~~~~~~ 480 (493)
.+++..++.+.
T Consensus 228 --~E~ii~k~~em 238 (258)
T COG2047 228 --MEEIIEKLKEM 238 (258)
T ss_pred --HHHHHHHHHHH
Confidence 24566666665
No 415
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=37.19 E-value=89 Score=31.25 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=23.9
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
+.||||+|.. ||- -+.|+..|.+.++-..+++..
T Consensus 3 ~~~kvLviG~--------g~r---ehal~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGS--------GGR---ESAIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECC--------CHH---HHHHHHHHHhCCCCCEEEEEC
Confidence 3599999964 554 456889999888655555543
No 416
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=37.18 E-value=30 Score=32.42 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=28.7
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+.++|+. ..+|.++. +++.|+++|+.|.+++...+.
T Consensus 50 ~WAVVTG------aTDGIGKa---yA~eLAkrG~nvvLIsRt~~K 85 (312)
T KOG1014|consen 50 SWAVVTG------ATDGIGKA---YARELAKRGFNVVLISRTQEK 85 (312)
T ss_pred CEEEEEC------CCCcchHH---HHHHHHHcCCEEEEEeCCHHH
Confidence 5888886 55777754 889999999999999877655
No 417
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=37.11 E-value=88 Score=24.42 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccccchHHHHHHhcCCCCcEEEeC
Q 039338 106 AHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYSKGWEQFDEENQREPFDVVHSE 185 (493)
Q Consensus 106 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiI~~~ 185 (493)
..+.++.+++.|+++.++.+..+. ..... ......+.....+ ...-......+.++.++.+.|.+|--
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~-~s~~~----------~~ad~~~~~~~~~-~~~~yl~~e~I~~ia~~~g~~~i~pG 81 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDT-VSTHV----------DMADEAYFEPPGP-SPESYLNIEAIIDIARKEGADAIHPG 81 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGT-TGHHH----------HHSSEEEEEESSS-GGGTTTSHHHHHHHHHHTTESEEEST
T ss_pred HHHHHHHHHHhCCcceeccCchhc-ccccc----------cccccceecCcch-hhhhhccHHHHhhHhhhhcCcccccc
Confidence 778899999999999998876654 11111 1122233333221 22222345666667767788888854
No 418
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=37.09 E-value=3.6e+02 Score=25.30 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=54.8
Q ss_pred cEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC--
Q 039338 311 SLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP-- 388 (493)
Q Consensus 311 ~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p-- 388 (493)
.+.|+-.|-+ ....++|...|++++-++.++=+.. +-+++.+.+..+-+....+|..
T Consensus 194 D~tiiA~G~m-----v~~al~AA~~L~~~GIsa~Vi~m~t----------------IKPiD~~~i~~~A~~t~~IvT~Ee 252 (312)
T COG3958 194 DLTIIATGVM-----VAEALEAAEILKKEGISAAVINMFT----------------IKPIDEQAILKAARETGRIVTAEE 252 (312)
T ss_pred ceEEEecCcc-----hHHHHHHHHHHHhcCCCEEEEecCc----------------cCCCCHHHHHHHHhhcCcEEEEec
Confidence 3677666655 3667889888888765554443322 2335656666777777666652
Q ss_pred -CCCCCCCChHHHHHHHcCCcEEecCC
Q 039338 389 -TLRPQGLDLTLMEAMMSGKPVMASRF 414 (493)
Q Consensus 389 -s~~~eg~~~~~~EAm~~G~PvI~s~~ 414 (493)
|.. .|+|..+.|.++-..|+..-..
T Consensus 253 Hsi~-GGlGsaVAEvlse~~p~~~~ri 278 (312)
T COG3958 253 HSII-GGLGSAVAEVLSENGPTPMRRI 278 (312)
T ss_pred ceee-cchhHHHHHHHHhcCCcceEEe
Confidence 333 7899999999999998665554
No 419
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=36.97 E-value=3.3e+02 Score=25.31 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHc-CCcEEecCCCCCcccee------------e--eC--cceEEECC-C
Q 039338 373 AELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMS-GKPVMASRFPSIKGTIV------------V--DD--EFGFMFAP-N 434 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~-G~PvI~s~~~~~~~e~v------------~--~~--~~G~~~~~-d 434 (493)
..-..-++.||++|.-....|++-.+++++... +.++|... .++. .+- . ++ ..-+..++ +
T Consensus 44 p~d~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~~-~~i~-~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~ 121 (282)
T cd01017 44 PKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEAS-KGIK-LLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVL 121 (282)
T ss_pred HHHHHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEECC-CCcc-ccccccccccccccccccCCCCCCccccCHHH
Confidence 344467889999997554335555566666532 23444321 1221 100 0 00 12345555 6
Q ss_pred HHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 039338 435 VESLHKTLEAAVSE-GPMRLAQRGEACRQYAASMFTANKMALAYERLFLC 483 (493)
Q Consensus 435 ~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~ 483 (493)
...+++.|.+.+.. .|+......+++.++..+ .+.+-+++.+.+..
T Consensus 122 ~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~~ 168 (282)
T cd01017 122 AIQQVENIKDALIKLDPDNKEYYEKNAAAYAKK---LEALDQEYRAKLAK 168 (282)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 66667776666652 255545555555555443 24444444444443
No 420
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.87 E-value=2.7e+02 Score=24.72 Aligned_cols=79 Identities=23% Similarity=0.202 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhCCCeEEEEEeCCCcHHHH---hhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHc
Q 039338 329 LHEAFSKLMVKYPDVYLIVAGSGPWEQRY---KDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMS 405 (493)
Q Consensus 329 ll~a~~~l~~~~~~~~l~i~G~g~~~~~~---~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~ 405 (493)
-+++++.+++++|++ ++-+|.--..+.. .+.+-++...+..++ ++.+.-.+.++.++|.. .-|.-+.+|+.+
T Consensus 53 ~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~-~vi~~a~~~~i~~iPG~---~TptEi~~a~~~ 127 (212)
T PRK05718 53 ALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQAIEAGAQFIVSPGLTP-PLLKAAQEGPIPLIPGV---STPSELMLGMEL 127 (212)
T ss_pred HHHHHHHHHHHCCCC-EEEEeeccCHHHHHHHHHcCCCEEECCCCCH-HHHHHHHHcCCCEeCCC---CCHHHHHHHHHC
Confidence 346666666666752 2333332222222 223455555555553 66677777777777652 234456777777
Q ss_pred CCcEEec
Q 039338 406 GKPVMAS 412 (493)
Q Consensus 406 G~PvI~s 412 (493)
|..+|--
T Consensus 128 Ga~~vKl 134 (212)
T PRK05718 128 GLRTFKF 134 (212)
T ss_pred CCCEEEE
Confidence 7766543
No 421
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.87 E-value=57 Score=23.41 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 105 HAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 105 ~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
....++..|++.|.+|+++...+..
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccchh
Confidence 4778999999999999999887655
No 422
>PLN02572 UDP-sulfoquinovose synthase
Probab=36.83 E-value=61 Score=32.60 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
..|+++. .|++.|.++|++|+++.
T Consensus 55 atGfIGs---~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 55 GDGYCGW---ATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCcHHHH---HHHHHHHHCCCeEEEEe
Confidence 3455554 48899999999999875
No 423
>PRK05568 flavodoxin; Provisional
Probab=36.68 E-value=1.2e+02 Score=24.54 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
..|..+..+..+++.+.+.|++|.++....
T Consensus 11 ~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~ 40 (142)
T PRK05568 11 GTGNTEAMANLIAEGAKENGAEVKLLNVSE 40 (142)
T ss_pred CCchHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 558888888899999999999999886543
No 424
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.53 E-value=94 Score=27.55 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.1
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+.+|++... ..||++. .|++.+.+.|+.|..-+...+.
T Consensus 7 ~k~VlItgc------s~GGIG~---ala~ef~~~G~~V~AtaR~~e~ 44 (289)
T KOG1209|consen 7 PKKVLITGC------SSGGIGY---ALAKEFARNGYLVYATARRLEP 44 (289)
T ss_pred CCeEEEeec------CCcchhH---HHHHHHHhCCeEEEEEccccch
Confidence 456777765 6688874 5899999999999877666555
No 425
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=36.49 E-value=75 Score=30.27 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=40.2
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC--CEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRG--HRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKW 161 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (493)
||||+.... ++ . .+++.|.+.| ++|.++...... +.... ......... .
T Consensus 2 ~~vLv~g~~-------~~----~-~~~~~l~~~~~g~~vi~~d~~~~~---~~~~~----------~d~~~~~p~----~ 52 (326)
T PRK12767 2 MNILVTSAG-------RR----V-QLVKALKKSLLKGRVIGADISELA---PALYF----------ADKFYVVPK----V 52 (326)
T ss_pred ceEEEecCC-------cc----H-HHHHHHHHhccCCEEEEECCCCcc---hhhHh----------ccCcEecCC----C
Confidence 688888641 11 1 6788888884 888887655322 11110 011111111 0
Q ss_pred ccccchHHHHHHhcCCCCcEEEeCc
Q 039338 162 RYSKGWEQFDEENQREPFDVVHSES 186 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~DiI~~~~ 186 (493)
........+.+++++.++|+|+...
T Consensus 53 ~~~~~~~~l~~~~~~~~id~ii~~~ 77 (326)
T PRK12767 53 TDPNYIDRLLDICKKEKIDLLIPLI 77 (326)
T ss_pred CChhHHHHHHHHHHHhCCCEEEECC
Confidence 1122345667777788999988653
No 426
>PRK09273 hypothetical protein; Provisional
Probab=36.15 E-value=75 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=29.0
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
|||+++... +..+=-+.....|.+.|.+.||+|.=+...
T Consensus 1 mkiali~e~----sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~ 39 (211)
T PRK09273 1 MKIALINEN----SQAAKNAIIYEALKKVADPKGHEVFNYGMY 39 (211)
T ss_pred CeEEeeccc----chhhhhHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 899999873 233334556778899999999999877754
No 427
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=36.09 E-value=3.2e+02 Score=24.45 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=52.7
Q ss_pred cEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCC--CcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 311 SLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSG--PWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 311 ~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g--~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
..+++.+|++.+.-.-..+++.+.+..... ++.+.++.-. +... ... + . .. .-.++.+.+..||.+|+-
T Consensus 27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~~-g~~v~~idl~~lPl~~--~d~-~--~-~p--~v~~l~~~v~~ADgvii~ 97 (219)
T TIGR02690 27 PRILLLYGSLRERSYSRLLAEEAARLLGCE-GRETRIFDPPGLPLPD--AAH-A--D-HP--KVRELRQLSEWSEGQVWC 97 (219)
T ss_pred CEEEEEECCCCCcchHHHHHHHHHHHHhhc-CCEEEEeCcccCCCCC--cCc-c--c-CH--HHHHHHHHHHhCCEEEEe
Confidence 356779999987766677777776665532 4566665421 1111 000 1 0 11 225688899999999885
Q ss_pred CC-CCCCCChH---HHHHHH---------cCCcEEe
Q 039338 389 TL-RPQGLDLT---LMEAMM---------SGKPVMA 411 (493)
Q Consensus 389 s~-~~eg~~~~---~~EAm~---------~G~PvI~ 411 (493)
|- +..+++-+ .++-+. .|+||-.
T Consensus 98 TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvai 133 (219)
T TIGR02690 98 SPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAV 133 (219)
T ss_pred CCccccCcCHHHHHHHHhcccCcccccccCCCcEEE
Confidence 53 22445544 344443 4677744
No 428
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=36.00 E-value=97 Score=26.59 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
...|-...+.+|+..|+++|+.|.++-.....
T Consensus 8 GG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CCccHHHHHHHHHhccccccccccccccCccc
Confidence 44566677888999999999999999886544
No 429
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.93 E-value=1.2e+02 Score=25.47 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=44.6
Q ss_pred cChHHHHHHHHHHHhhCCCeEEEEEeCCCcHH---HHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC
Q 039338 324 KGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQ---RYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 324 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~---~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p 388 (493)
=++...++++..+....-+.-+++.|++.... .+++.+..|...|. +..--.++.++||-|+.-
T Consensus 89 ~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~-~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGA-EPGFSTALQNSADIAIIL 155 (160)
T ss_pred ccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC-CCCChHHHHHhcCeEEeC
Confidence 45788899998875544577777778876544 44555688888884 223455788999988864
No 430
>PRK12342 hypothetical protein; Provisional
Probab=35.83 E-value=1.3e+02 Score=27.54 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=46.4
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCC-C-CccccCCCCCCCCCCceEeec-CCCCccccccchHHHHHHh
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSP-S-ISHQENDDGSNNKYPLLHFHE-GEADKWRYSKGWEQFDEEN 174 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 174 (493)
..+-...++.+.+-.|++.|.+|++++..+...... . .+. +..+......+. ......+....-..+...+
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~a------lamGaD~avli~d~~~~g~D~~ata~~La~~i 105 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDV------LSRGPHSLYLVQDAQLEHALPLDTAKALAAAI 105 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHH------HHcCCCEEEEEecCccCCCCHHHHHHHHHHHH
Confidence 456667788888989987799999999876541111 0 111 223333333332 2112223333334455555
Q ss_pred cCCCCcEEEeC
Q 039338 175 QREPFDVVHSE 185 (493)
Q Consensus 175 ~~~~~DiI~~~ 185 (493)
++.+||+|++-
T Consensus 106 ~~~~~DLVl~G 116 (254)
T PRK12342 106 EKIGFDLLLFG 116 (254)
T ss_pred HHhCCCEEEEc
Confidence 55679999985
No 431
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.76 E-value=86 Score=28.32 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||.-|... ...-|-...+.+|+..|+++|+.|.++-.+...
T Consensus 1 m~iI~v~s~----KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 1 MKVIAIVGV----KGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred CcEEEEEeC----CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 565555441 244455667889999999999999999876543
No 432
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.75 E-value=77 Score=27.23 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 102 MERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 102 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.......+.+.|.+.|++|.++.+....
T Consensus 12 ~a~~~~~ll~~L~~~g~~V~vi~T~~A~ 39 (177)
T TIGR02113 12 AAYKAADLTSQLTKLGYDVTVLMTQAAT 39 (177)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEChHHH
Confidence 3445678999999999999998876543
No 433
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.73 E-value=83 Score=28.99 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=28.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|+|++. .. ..-|=.+.+.+|+.+|+++|+.|.++-.+...
T Consensus 1 ~~i~~~-gK-----GGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 1 MILAVY-GK-----GGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred CEEEEE-cC-----CcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 667776 22 22344455789999999999999999766543
No 434
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=35.72 E-value=3.3e+02 Score=25.71 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=58.3
Q ss_pred HHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCC-cEEecCCCCCcc-ceee---e--CcceEEECC-CHHHHHHHHHHH
Q 039338 374 ELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGK-PVMASRFPSIKG-TIVV---D--DEFGFMFAP-NVESLHKTLEAA 445 (493)
Q Consensus 374 ~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~-PvI~s~~~~~~~-e~v~---~--~~~G~~~~~-d~~~l~~~i~~l 445 (493)
.=..-++.||+++.-....|+|-..+++.+.... ++|.. ..++.- ..-. + .......++ +...+++.|.+.
T Consensus 74 ~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~-s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~ 152 (303)
T COG0803 74 SDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEV-SDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADA 152 (303)
T ss_pred HHHHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEc-cCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHH
Confidence 3346788899999866555665566666665544 23322 122210 1111 1 134556666 666666666666
Q ss_pred HH--cCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 039338 446 VS--EGPMRLAQRGEACRQYAASMFTANKMALAYERLFLCI 484 (493)
Q Consensus 446 l~--~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~i 484 (493)
+. + |+......+++.++.++- +.+.+.+...+..+
T Consensus 153 L~~~d-P~~~~~y~~N~~~y~~kL---~~l~~~~~~~~~~~ 189 (303)
T COG0803 153 LVELD-PENKETYEKNAEAYLKKL---NKLDEEAKAKLSKI 189 (303)
T ss_pred HHHhC-cccHHHHHHHHHHHHHHH---HHHHHHHHHHHhcC
Confidence 55 4 666667777777766552 44444444444443
No 435
>PLN02735 carbamoyl-phosphate synthase
Probab=35.65 E-value=1.3e+02 Score=34.31 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=28.2
Q ss_pred ceEEEEEeccCCCCCCCC---chHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 83 TLKIAVFSRKWPISTTPG---GMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~g---G~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.+|||++...- ...| -......+++++|.+.|++|+++....
T Consensus 23 ~kkVLiiGsG~---~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGP---IVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCc---cccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 45899997631 0122 112235679999999999999997655
No 436
>PRK08309 short chain dehydrogenase; Provisional
Probab=35.65 E-value=77 Score=27.19 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCEEEEEecC
Q 039338 106 AHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 106 ~~~l~~~L~~~G~~V~v~~~~ 126 (493)
...+++.|.++|++|.+++..
T Consensus 12 gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 12 LKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHHCcCEEEEEECC
Confidence 345999999999999987643
No 437
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=35.63 E-value=1.6e+02 Score=25.94 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCE--EEeCCCCCC-CCChHHHHHHHcCCcEEecCCCC-Cc-cc-eeeeCcceEEECCCHHHHHHHHHHHH
Q 039338 373 AELRAFYNAIDI--FVNPTLRPQ-GLDLTLMEAMMSGKPVMASRFPS-IK-GT-IVVDDEFGFMFAPNVESLHKTLEAAV 446 (493)
Q Consensus 373 ~~~~~~~~~adv--~v~ps~~~e-g~~~~~~EAm~~G~PvI~s~~~~-~~-~e-~v~~~~~G~~~~~d~~~l~~~i~~ll 446 (493)
.++.+.+..+.+ .+..+ .. ..|-++-+|-..|.|++.-=.+- +. +. .+.+-.+|--...+.+++.+.+..++
T Consensus 33 ~~i~~~Lr~~Girv~~D~r--~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll 110 (202)
T cd00862 33 DELAERLKAAGIRVHVDDR--DNYTPGWKFNDWELKGVPLRIEIGPRDLEKNTVVIVRRDTGEKKTVPLAELVEKVPELL 110 (202)
T ss_pred HHHHHHHHHCCCEEEEECC--CCCCHhHHHHHHHhCCCCEEEEECcchhhCCEEEEEEecCCcceEEEHHHHHHHHHHHH
Confidence 455666666544 44444 35 88999999999999987652111 00 01 12222233222225678888888777
Q ss_pred HcCcHHHHHHHHHHHHHHHH
Q 039338 447 SEGPMRLAQRGEACRQYAAS 466 (493)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~ 466 (493)
++ ....|.++|++...+
T Consensus 111 ~~---i~~~l~~~A~~~~~~ 127 (202)
T cd00862 111 DE---IQEDLYERALEFRDA 127 (202)
T ss_pred HH---HHHHHHHHHHHHHhc
Confidence 64 345666677666653
No 438
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=35.58 E-value=66 Score=29.24 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=24.3
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.|||+++. ..|+.+ ..+++.|.++||+|++++...
T Consensus 17 ~~~ilItG-------asG~iG---~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 17 TKTVFVAG-------ATGRTG---KRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred CCeEEEEC-------CCcHHH---HHHHHHHHhCCCEEEEEecCH
Confidence 46777774 235555 447888888999998876543
No 439
>COG3911 Predicted ATPase [General function prediction only]
Probab=35.47 E-value=71 Score=26.56 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEE
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIF 123 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 123 (493)
+.++||+.|++. .+|+.- ..|..+|+++|+-+..-
T Consensus 5 ~~nR~~~fIltG------gpGaGK---TtLL~aLa~~Gfatvee 39 (183)
T COG3911 5 PFNRHKRFILTG------GPGAGK---TTLLAALARAGFATVEE 39 (183)
T ss_pred ccccceEEEEeC------CCCCcH---HHHHHHHHHcCceeecc
Confidence 567899999996 334433 34788999999765543
No 440
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=35.46 E-value=72 Score=31.46 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=26.7
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
....|||+++. ..|+++ ..+++.|.++||+|.+++....
T Consensus 57 ~~~~~kVLVtG-------atG~IG---~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 57 EPKDVTVLVVG-------ATGYIG---KFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCCCEEEEEC-------CCcHHH---HHHHHHHHHCCCEEEEEEechh
Confidence 34457777764 234444 4588889999999999876543
No 441
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.38 E-value=1.7e+02 Score=23.80 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=40.0
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCccccc
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRYS 164 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (493)
+|++-+. ...+...-..-++..|...|++|+-+......
T Consensus 3 ~vvigtv------~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~----------------------------------- 41 (134)
T TIGR01501 3 TIVLGVI------GSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQ----------------------------------- 41 (134)
T ss_pred eEEEEEe------cCChhhHhHHHHHHHHHHCCCEEEECCCCCCH-----------------------------------
Confidence 4555553 33455555666788889999999887665544
Q ss_pred cchHHHHHHhcCCCCcEEEeCc
Q 039338 165 KGWEQFDEENQREPFDVVHSES 186 (493)
Q Consensus 165 ~~~~~~~~~~~~~~~DiI~~~~ 186 (493)
..+.+...++++|+|-+.+
T Consensus 42 ---e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 42 ---EEFIKAAIETKADAILVSS 60 (134)
T ss_pred ---HHHHHHHHHcCCCEEEEec
Confidence 5666666688999997653
No 442
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=35.29 E-value=1e+02 Score=27.77 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=29.0
Q ss_pred eEEEEEeccCCCCCCCCchH--HHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGME--RHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~--~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||.-+.. ..||++ ..+.+|+-+|+++|..|.++-.+...
T Consensus 1 M~iI~v~n------~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~ 42 (231)
T PRK13849 1 MKLLTFCS------FKGGAGKTTALMGLCAALASDGKRVALFEADENR 42 (231)
T ss_pred CeEEEEEC------CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 56555554 445554 45678999999999999999877655
No 443
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=35.19 E-value=1e+02 Score=21.97 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=21.9
Q ss_pred ceEEECC-CHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 039338 427 FGFMFAP-NVESLHKTLEAAVSEGPMRLAQRGEACRQYAA 465 (493)
Q Consensus 427 ~G~~~~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 465 (493)
.|+++.| +-+++.+.|.+..++-.+...++.+.+.+.++
T Consensus 15 ~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k 54 (74)
T PF12732_consen 15 AGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVK 54 (74)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666 66666666666655534444445555444433
No 444
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=35.17 E-value=2e+02 Score=25.41 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhhCCCeEEEEEeCCC--cHH-------HHhhh-cCcEEEecCCCHHHHHHHHHHcCEEEeCCC----
Q 039338 325 GHPLLHEAFSKLMVKYPDVYLIVAGSGP--WEQ-------RYKDF-GHQVLVMGSMSPAELRAFYNAIDIFVNPTL---- 390 (493)
Q Consensus 325 g~~~ll~a~~~l~~~~~~~~l~i~G~g~--~~~-------~~~~l-~~~V~~~g~~~~~~~~~~~~~adv~v~ps~---- 390 (493)
+.+.+.+.+..+.+ .+.++.++.... ..+ .++++ +-.+..+...+.++..+.+..||++++|.-
T Consensus 16 ~~~~l~~~l~~~~~--~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~ 93 (212)
T cd03146 16 ALPAIDDLLLSLTK--ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFN 93 (212)
T ss_pred chHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHH
Confidence 44445455444432 244666665432 122 22334 433333333334577888899999998751
Q ss_pred -----CCCCCChHHHHHHHcCCcEEecCCCC
Q 039338 391 -----RPQGLDLTLMEAMMSGKPVMASRFPS 416 (493)
Q Consensus 391 -----~~eg~~~~~~EAm~~G~PvI~s~~~~ 416 (493)
+.-++.-.+-++...|+|++.+..|.
T Consensus 94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 94 LLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred HHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 11133344556667899999876443
No 445
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.14 E-value=2.1e+02 Score=27.18 Aligned_cols=54 Identities=15% Similarity=0.373 Sum_probs=39.9
Q ss_pred HHcCEEEeCCCCCCCCChHHHHHHH----cCCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 380 NAIDIFVNPTLRPQGLDLTLMEAMM----SGKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 380 ~~adv~v~ps~~~eg~~~~~~EAm~----~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
..+|+++.-. ++| |++.|.. .++|++.-+. |..|++.+.+++++.+++.++++.
T Consensus 67 ~~~Dlvi~iG--GDG---TlL~aar~~~~~~iPilGIN~----------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMKFAIVLG--GDG---TVLSAARQLAPCGIPLLTINT----------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcCEEEEEe--CcH---HHHHHHHHhcCCCCcEEEEeC----------CCCcccccCCHHHHHHHHHHHHcC
Confidence 4689988644 566 7776655 3779987764 335777777889999999999876
No 446
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=35.10 E-value=72 Score=26.34 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCC---EEEEEecCC
Q 039338 81 KFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGH---RVHIFTSPV 127 (493)
Q Consensus 81 ~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~---~V~v~~~~~ 127 (493)
|+++||++|...| +.-=+......-.+.|.+.|. ++.++....
T Consensus 1 ~~~~ri~IV~s~~----n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPG 46 (144)
T PF00885_consen 1 MSGLRIAIVVSRF----NEEITDRLLEGALEELKRHGVAEENIEVIRVPG 46 (144)
T ss_dssp -TTEEEEEEEEST----THHHHHHHHHHHHHHHHHTTTTGGCEEEEEESS
T ss_pred CCCCEEEEEEEec----cHHHHHHHHHHHHHHHHHcCCCccceEEEEcCC
Confidence 4679999999987 333445555566778888887 677766543
No 447
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=35.07 E-value=48 Score=32.11 Aligned_cols=120 Identities=8% Similarity=-0.025 Sum_probs=61.4
Q ss_pred EEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC--C
Q 039338 312 LVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP--T 389 (493)
Q Consensus 312 ~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p--s 389 (493)
.+..++++-....+-.. .+++|.+. +.+...|.... ....+.+...++++...+.+.- |
T Consensus 177 ~~~w~~Snc~~~~~R~~---~~~~L~~~---~~vd~yG~c~~-------------~~~~~~~~~~~~~~~ykF~lafENs 237 (349)
T PF00852_consen 177 LAAWIVSNCNPHSGREE---YVRELSKY---IPVDSYGKCGN-------------NNPCPRDCKLELLSKYKFYLAFENS 237 (349)
T ss_dssp EEEE--S-S--H-HHHH---HHHHHHTT---S-EEE-SSTT---------------SSS--S-HHHHHHTEEEEEEE-SS
T ss_pred eEEEEeeCcCCcccHHH---HHHHHHhh---cCeEccCCCCC-------------CCCcccccccccccCcEEEEEecCC
Confidence 45545555443323233 34445432 46788887610 0112334577778887777752 2
Q ss_pred CCCCC-CChHHHHHHHcCCcEEecC--CCCCccceeeeCcceEEECC--CHHHHHHHHHHHHHcCcHHHH
Q 039338 390 LRPQG-LDLTLMEAMMSGKPVMASR--FPSIKGTIVVDDEFGFMFAP--NVESLHKTLEAAVSEGPMRLA 454 (493)
Q Consensus 390 ~~~eg-~~~~~~EAm~~G~PvI~s~--~~~~~~e~v~~~~~G~~~~~--d~~~l~~~i~~ll~~~~~~~~ 454 (493)
.. ++ .-=++.+|+..|+.+|.-. .+... +++- .+.-+-++. ++++|++-|..+.+| ++.+.
T Consensus 238 ~c-~dYiTEK~~~al~~g~VPI~~G~~~~~~~-~~~P-~~SfI~~~df~s~~~La~yl~~l~~n-~~~Y~ 303 (349)
T PF00852_consen 238 NC-PDYITEKFWNALLAGTVPIYWGPPRPNYE-EFAP-PNSFIHVDDFKSPKELADYLKYLDKN-DELYN 303 (349)
T ss_dssp ---TT---HHHHHHHHTTSEEEEES---TTHH-HHS--GGGSEEGGGSSSHHHHHHHHHHHHT--HHHHH
T ss_pred CC-CCCCCHHHHHHHHCCeEEEEECCEecccc-cCCC-CCCccchhcCCCHHHHHHHHHHHhcC-HHHHh
Confidence 11 22 2236889999999666665 33443 4433 334444444 899999999999988 66554
No 448
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=35.02 E-value=1.7e+02 Score=28.66 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=52.1
Q ss_pred ccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhh-hcC-cE-EEecCCCHHHHHHHHHH--cCEEEeCCCCCCCCCh
Q 039338 323 DKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKD-FGH-QV-LVMGSMSPAELRAFYNA--IDIFVNPTLRPQGLDL 397 (493)
Q Consensus 323 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~-l~~-~V-~~~g~~~~~~~~~~~~~--adv~v~ps~~~eg~~~ 397 (493)
.++.+.+.+..+++. | +.+++++......+++ +.. .+ .+.|. +.+.++.+. +|++|.......|. .
T Consensus 36 ~~n~~~l~~q~~~f~---p--~~v~i~~~~~~~~l~~~l~~~~~~v~~G~---~~~~~l~~~~~vD~Vv~Ai~G~aGl-~ 106 (385)
T PRK05447 36 GKNVELLAEQAREFR---P--KYVVVADEEAAKELKEALAAAGIEVLAGE---EGLCELAALPEADVVVAAIVGAAGL-L 106 (385)
T ss_pred CCCHHHHHHHHHHhC---C--CEEEEcCHHHHHHHHHhhccCCceEEECh---hHHHHHhcCCCCCEEEEeCcCcccH-H
Confidence 467777777766663 3 5666666443344433 221 23 34454 677788775 58888876432344 4
Q ss_pred HHHHHHHcCCcEEecC
Q 039338 398 TLMEAMMSGKPVMASR 413 (493)
Q Consensus 398 ~~~EAm~~G~PvI~s~ 413 (493)
.+++|+..|++|...+
T Consensus 107 ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 107 PTLAAIRAGKRIALAN 122 (385)
T ss_pred HHHHHHHCCCcEEEeC
Confidence 5889999999999865
No 449
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=34.92 E-value=68 Score=30.97 Aligned_cols=44 Identities=9% Similarity=-0.040 Sum_probs=30.4
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.+|||+++.... +...--.-....+++++|.+.||+|..+....
T Consensus 2 ~~~~i~vl~GG~--S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 2 NRIKVGILFGGC--SEEHPVSVKSAIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCcEEEEEECCC--CCchHHHHHhHHHHHHhhcccCCeEEEEEECC
Confidence 478999998643 11222222446678999999999999887654
No 450
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=34.73 E-value=1.5e+02 Score=25.54 Aligned_cols=48 Identities=19% Similarity=0.309 Sum_probs=31.5
Q ss_pred EecCCCHHHHHHHHHHcCEEEeCCCCCCCCChH--HHHHHH------cCCcEEecCCCCC
Q 039338 366 VMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLT--LMEAMM------SGKPVMASRFPSI 417 (493)
Q Consensus 366 ~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~--~~EAm~------~G~PvI~s~~~~~ 417 (493)
....+. +....++..+|++|.- +.|+|+- ++|++. .++||+..+..+.
T Consensus 82 ~~~~~~-~Rk~~m~~~sda~I~l---PGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~ 137 (178)
T TIGR00730 82 EVNGMH-ERKAMMAELADAFIAM---PGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGH 137 (178)
T ss_pred EECCHH-HHHHHHHHhCCEEEEc---CCCcchHHHHHHHHHHHHcCCCCCCEEEECCcch
Confidence 334442 5666788899998863 3566633 566665 4899999875443
No 451
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=34.71 E-value=64 Score=32.60 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=27.9
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
||++++.. .+.||-+.+ +++.|.+.|++|.|+....
T Consensus 61 ~VlVlcG~----GNNGGDGlv---~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 61 RVLALCGP----GNNGGDGLV---AARHLHHFGYKPSICYPKR 96 (462)
T ss_pred EEEEEECC----CCCHHHHHH---HHHHHHHCCCceEEEEECC
Confidence 69999872 367776544 7789999999999998653
No 452
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=34.63 E-value=87 Score=31.23 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=23.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|||+++.. |+. ...|++++.+.|+.+.+++...
T Consensus 1 ~kiliiG~--------G~~---~~~l~~~~~~~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGN--------GGR---EHALAWKLAQSPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECC--------ChH---HHHHHHHHHhCCCccEEEEECC
Confidence 78999853 332 5668888888888777775543
No 453
>PRK00170 azoreductase; Reviewed
Probab=34.60 E-value=1.1e+02 Score=26.71 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=29.3
Q ss_pred eEEEEEeccCCCCCCCCchHH-HHHHHHHHHHhC--CCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMER-HAHTLHVALARR--GHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~-~~~~l~~~L~~~--G~~V~v~~~~~~~ 129 (493)
|||++|..+ |. ..+|... .+..+.+.+.++ |++|.++......
T Consensus 2 mkil~i~gS-pr--~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~ 47 (201)
T PRK00170 2 SKVLVIKSS-IL--GDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEP 47 (201)
T ss_pred CeEEEEecC-CC--CCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 789999885 21 2225444 455677788887 9999998775544
No 454
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=34.55 E-value=66 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=23.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
|+|+++. ..||.+. .+++.|.++|++|.++....
T Consensus 1 ~~vlItG-------asg~iG~---~la~~l~~~G~~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTG-------ATAGFGE---CITRRFIQQGHKVIATGRRQ 34 (248)
T ss_pred CEEEEEC-------CCchHHH---HHHHHHHHCCCEEEEEECCH
Confidence 5665553 3355554 47899999999998876543
No 455
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=34.54 E-value=1.8e+02 Score=25.66 Aligned_cols=95 Identities=28% Similarity=0.335 Sum_probs=53.9
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCC---cHHHHhh---hc--CcEEEecCCCHHHHHHHHHHcCE
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGP---WEQRYKD---FG--HQVLVMGSMSPAELRAFYNAIDI 384 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~---~~~~~~~---l~--~~V~~~g~~~~~~~~~~~~~adv 384 (493)
++++.|.= ..|=|-++ +.+.|...+-++.++..|+.. .+..... ++ ..+.... .......+|+
T Consensus 52 v~vlcG~G--nNGGDG~V-aAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~------~~~~~~~~dv 122 (203)
T COG0062 52 VLVLCGPG--NNGGDGLV-AARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKE------LEDEPESADV 122 (203)
T ss_pred EEEEECCC--CccHHHHH-HHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecc------cccccccCCE
Confidence 45566643 25555554 456777766688888888644 2222222 22 1222222 2126778899
Q ss_pred EEeCCCCCCCCC-------hHHHHHHH-cCCcEEecCCCCC
Q 039338 385 FVNPTLRPQGLD-------LTLMEAMM-SGKPVMASRFPSI 417 (493)
Q Consensus 385 ~v~ps~~~eg~~-------~~~~EAm~-~G~PvI~s~~~~~ 417 (493)
+|..-. +-|+. -+++|.+. .|+|||+-|.++-
T Consensus 123 IVDalf-G~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPSG 162 (203)
T COG0062 123 IVDALF-GTGLSGPLREPFASLIEAINASGKPIVAVDIPSG 162 (203)
T ss_pred EEEece-ecCCCCCCccHHHHHHHHHHhcCCceEEEeCCCC
Confidence 987542 12221 34666665 9999999987664
No 456
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.38 E-value=91 Score=28.65 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..-|=.+.+.+|+.+|+++|+.|.++-.+...
T Consensus 10 GGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 33455556789999999999999999876654
No 457
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=34.32 E-value=1e+02 Score=27.14 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=33.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+.|+..+ . ..|-....+...++.+.+.|.||.++......
T Consensus 1 mki~~I~gs~-r--~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~ 43 (207)
T COG0655 1 MKILGINGSP-R--SNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKN 43 (207)
T ss_pred CeeeEEEecC-C--CCCcHHHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 7888887753 1 36777777888899999999999999987654
No 458
>PRK03094 hypothetical protein; Provisional
Probab=33.99 E-value=25 Score=25.51 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEec
Q 039338 103 ERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 103 ~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
+.-+.++.++|+++||+|.=+..
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCc
Confidence 33467899999999999987643
No 459
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=33.93 E-value=98 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
||.+..-..+++.|.++||+|.++....
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3334444568999999999998887543
No 460
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=33.92 E-value=2.3e+02 Score=25.62 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=43.9
Q ss_pred hcCcEEEecC-CCHH---HHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC
Q 039338 360 FGHQVLVMGS-MSPA---ELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP 433 (493)
Q Consensus 360 l~~~V~~~g~-~~~~---~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~ 433 (493)
+.++|.+.|. +|.+ ...+..+.||++|. +|..-.+. ..+.+.+..|.|+|.-+.+....+ .+....+++..
T Consensus 150 lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa-~~l~~~~~~~~~~v~iN~~~~~~~--~~~~~d~~~~~ 226 (235)
T cd01408 150 VKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPF-ASLPSRVPSEVPRVLINREPVGHL--GKRPFDVALLG 226 (235)
T ss_pred ccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccH-HHHHHHHhCCCcEEEEeCCCCCCC--CCCCcCEEEeC
Confidence 3478888886 4542 34456788999887 34322222 235667778999998776544311 01233455554
Q ss_pred CHHHHH
Q 039338 434 NVESLH 439 (493)
Q Consensus 434 d~~~l~ 439 (493)
+.+++.
T Consensus 227 ~~~~~l 232 (235)
T cd01408 227 DCDDGV 232 (235)
T ss_pred CHHHHH
Confidence 444443
No 461
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=33.90 E-value=94 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..|-.+..+..+++.|.++|++|.++......
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 56888999999999999999999999876655
No 462
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=33.89 E-value=65 Score=25.11 Aligned_cols=40 Identities=23% Similarity=0.042 Sum_probs=25.9
Q ss_pred HHHHHHcCEEEeCCCCCCCCChHHHH---HHHcCCcEEecCCC
Q 039338 376 RAFYNAIDIFVNPTLRPQGLDLTLME---AMMSGKPVMASRFP 415 (493)
Q Consensus 376 ~~~~~~adv~v~ps~~~eg~~~~~~E---Am~~G~PvI~s~~~ 415 (493)
.+.+.+||++|..-.....-+.+.+| |.+.|+||++....
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 36789999988743210122346666 67899999987543
No 463
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=33.80 E-value=90 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=28.1
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC-CCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARR-GHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~ 126 (493)
|||+++-.+ ..|-.+..+..+++.+.+. |++|.++-..
T Consensus 1 ~kilIiY~S-----~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 1 VKVLVLYYS-----MYGHIETMARAVAEGAREVDGAEVVVKRVP 39 (197)
T ss_pred CeEEEEEeC-----CCCHHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 578888753 4566677777788888775 9999988754
No 464
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=33.80 E-value=64 Score=28.99 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=22.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEe
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFT 124 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~ 124 (493)
||..+|+. ..||.+ ..+++.|.++|++|.++.
T Consensus 1 ~~~~lItG------a~g~iG---~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 1 MAIALVTG------GSRGIG---RATALLLAQEGYTVAVNY 32 (247)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEe
Confidence 56677764 345555 458899999999998754
No 465
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.66 E-value=1.6e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 100 GGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
+....-...++..|.+.|++|..+..
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 44555577788889999999988854
No 466
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.35 E-value=3e+02 Score=26.08 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCC
Q 039338 313 VLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRP 392 (493)
Q Consensus 313 ~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~ 392 (493)
.|+.+.+.......+.+-+....+.+++-.+.+.-................+.+-..-..+++.+ .+|+++.-. +
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vi~lG--G 81 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAAD---GCELVLVLG--G 81 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhccc---CCCEEEEEc--C
Q ss_pred CCCChHHHHHHHc----CCcEEecCCCCCccceeeeCcceEEECCCHHHHHHHHHHHHHc
Q 039338 393 QGLDLTLMEAMMS----GKPVMASRFPSIKGTIVVDDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 393 eg~~~~~~EAm~~----G~PvI~s~~~~~~~e~v~~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
+| |++.|... ++|++.-+. |..|++.+.+++++.+++.++++.
T Consensus 82 DG---T~L~aar~~~~~~~PilGIN~----------G~lGFL~~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 82 DG---TILRAAELARAADVPVLGVNL----------GHVGFLAEAEAEDLDEAVERVVDR 128 (306)
T ss_pred CH---HHHHHHHHhccCCCcEEEEec----------CCCceeccCCHHHHHHHHHHHHcC
No 467
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=33.22 E-value=1.3e+02 Score=28.82 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=33.3
Q ss_pred CCCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 79 PSKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 79 ~~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
+..++.||..++.. ..-|-.....+|+.+|+++|..|.++..+...
T Consensus 26 ~~~~~~~ii~v~gk-----gG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 26 PPTKKTQIIAIYGK-----GGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCCCCCeEEEEECC-----CCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 34456677777642 44566677889999999999999999765443
No 468
>PRK07236 hypothetical protein; Provisional
Probab=33.17 E-value=40 Score=33.07 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=27.3
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.|+.++|+||.. ..+| ..++..|++.|++|+|+-...
T Consensus 3 ~~~~~~ViIVGa------G~aG-----l~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 3 HMSGPRAVVIGG------SLGG-----LFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCCeEEEECC------CHHH-----HHHHHHHHhCCCCEEEEecCC
Confidence 356789999964 2233 457888999999999998553
No 469
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=33.00 E-value=1.1e+02 Score=28.39 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=31.0
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
..|++.|+.. ....|-...+.+|+.+|++.|..|.++-...
T Consensus 102 ~~~vi~vts~----~~g~Gktt~a~nLA~~la~~g~~VllID~D~ 142 (274)
T TIGR03029 102 GRKALAVVSA----KSGEGCSYIAANLAIVFSQLGEKTLLIDANL 142 (274)
T ss_pred CCeEEEEECC----CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 4566555552 2556778889999999999999999987644
No 470
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.98 E-value=4.1e+02 Score=24.82 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=47.1
Q ss_pred cCcEEEecC-CCHHH---HHHHHHHcCEEEeCCCCCCCCChH--HHHHHHcCCcEEecCCCCCccceeeeCcceEEECCC
Q 039338 361 GHQVLVMGS-MSPAE---LRAFYNAIDIFVNPTLRPQGLDLT--LMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAPN 434 (493)
Q Consensus 361 ~~~V~~~g~-~~~~~---~~~~~~~adv~v~ps~~~eg~~~~--~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~d 434 (493)
.++|.+.|. ++.+. ..+.+.++|++|+-.....-.+.. +-.|...|.|+|.-+.+... .+....+.+..+
T Consensus 190 rP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~----~~~~~~~~i~g~ 265 (285)
T PRK05333 190 KPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTR----ADPLLTLKVEAS 265 (285)
T ss_pred cCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCC----CCcceeEEEeCC
Confidence 378887775 45433 556778899988732111222221 33455678999998865432 223345666656
Q ss_pred HHHHHHHHHHHH
Q 039338 435 VESLHKTLEAAV 446 (493)
Q Consensus 435 ~~~l~~~i~~ll 446 (493)
..+....|.+.+
T Consensus 266 ~~evL~~l~~~l 277 (285)
T PRK05333 266 CAQALAALVARL 277 (285)
T ss_pred HHHHHHHHHHHh
Confidence 666666665443
No 471
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.87 E-value=1.5e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCEEEe--CCCC--CCCCChHHHHHHHcCCcEEecCCCCC
Q 039338 373 AELRAFYNAIDIFVN--PTLR--PQGLDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 373 ~~~~~~~~~adv~v~--ps~~--~eg~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
.++.++++.||++++ |... ..-++-..++.|--|.-+|-+.-|++
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~ 131 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGEL 131 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGG
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhh
Confidence 477789999999887 4321 12356678888888877776654443
No 472
>PRK07102 short chain dehydrogenase; Provisional
Probab=32.68 E-value=69 Score=28.82 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.4
Q ss_pred CCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 99 PGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 99 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.||.+ ..+++.|.++|++|.++....
T Consensus 10 s~giG---~~~a~~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 10 TSDIA---RACARRYAAAGARLYLAARDV 35 (243)
T ss_pred CcHHH---HHHHHHHHhcCCEEEEEeCCH
Confidence 35554 558889999999998886543
No 473
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=32.68 E-value=1.1e+02 Score=33.05 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=56.1
Q ss_pred CCCceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCC--CC-CCCCCCceEeecC
Q 039338 80 SKFTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQEND--DG-SNNKYPLLHFHEG 156 (493)
Q Consensus 80 ~~~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 156 (493)
...+|||++++.. ....|+...++.+++....+||+|.-+......+........... .. ...++..+..
T Consensus 386 ~~~~~~IaIltsG----G~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT--- 458 (762)
T cd00764 386 EKTNLNIAIVNVG----APAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGT--- 458 (762)
T ss_pred cccccEEEEEecC----CCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccc---
Confidence 3456999999984 355788888899998888889999988766554222111110000 00 0011111111
Q ss_pred CCCccccccchHHHHHHhcCCCCcEEEeCc
Q 039338 157 EADKWRYSKGWEQFDEENQREPFDVVHSES 186 (493)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~DiI~~~~ 186 (493)
.+...........+.++++++|.+++-+
T Consensus 459 --~R~~~~~~~~~i~~~l~~~~Id~LivIG 486 (762)
T cd00764 459 --KRTLPKKDLETIAYNFQKYGIDGLIIVG 486 (762)
T ss_pred --cCCCcHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1111123456677777789999887754
No 474
>PHA02518 ParA-like protein; Provisional
Probab=32.64 E-value=1.3e+02 Score=26.37 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 98 TPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 98 ~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..-|-.+.+.+|+-+|+++|+.|.++-.+...
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 33445556788999999999999999876544
No 475
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=32.61 E-value=57 Score=28.32 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=26.8
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
.|||++|-+. ..+..++++.|.+.|+++.++...
T Consensus 1 ~~~iliid~~----------dsf~~~i~~~l~~~g~~~~v~~~~ 34 (190)
T PRK06895 1 ATKLLIINNH----------DSFTFNLVDLIRKLGVPMQVVNVE 34 (190)
T ss_pred CcEEEEEeCC----------CchHHHHHHHHHHcCCcEEEEECC
Confidence 3899999762 124677999999999999998754
No 476
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.52 E-value=70 Score=30.00 Aligned_cols=28 Identities=21% Similarity=0.105 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 102 MERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 102 ~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
.+..=..|++.|.++||+|..+......
T Consensus 9 tGfiG~~l~~~L~~~g~~V~~~~r~~~~ 36 (314)
T COG0451 9 AGFIGSHLVERLLAAGHDVRGLDRLRDG 36 (314)
T ss_pred cccHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 3334467999999999999999976554
No 477
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=32.48 E-value=1.5e+02 Score=30.29 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhC--CCEEEEEec
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARR--GHRVHIFTS 125 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~--G~~V~v~~~ 125 (493)
||||++.. ||- -..|+.+|++. |++|.++..
T Consensus 1 mkVLviG~--------Ggr---ehal~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGD--------GAR---EHALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECC--------chh---HHHHHHHHHhCCCCCEEEEEEC
Confidence 89999853 443 45577788776 888888744
No 478
>COG1647 Esterase/lipase [General function prediction only]
Probab=32.41 E-value=91 Score=27.83 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=26.2
Q ss_pred EEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 86 IAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 86 Il~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
||+++. ..|..+-+..|+++|.++|+.|++=....
T Consensus 18 VLllHG-------FTGt~~Dvr~Lgr~L~e~GyTv~aP~ypG 52 (243)
T COG1647 18 VLLLHG-------FTGTPRDVRMLGRYLNENGYTVYAPRYPG 52 (243)
T ss_pred EEEEec-------cCCCcHHHHHHHHHHHHCCceEecCCCCC
Confidence 666653 36778889999999999999877644333
No 479
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=32.34 E-value=1.2e+02 Score=23.95 Aligned_cols=41 Identities=12% Similarity=-0.036 Sum_probs=27.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHH--HHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHA--HTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~--~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||+.|+.. ..|-+..++ ..|.++-.+.||++.|=+-....
T Consensus 3 mkivaVtac-----p~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g 45 (114)
T PRK10427 3 AYLVAVTAC-----VSGVAHTYMAAERLEKLCQLEKWGVKIETQGALG 45 (114)
T ss_pred ceEEEEeeC-----CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcC
Confidence 899999872 234444443 35666667789999987765544
No 480
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=32.31 E-value=2e+02 Score=25.21 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=39.7
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCCCCCCCCccccCCCCCCCCCCceEeecCCCCcccc
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDNINSPSISHQENDDGSNNKYPLLHFHEGEADKWRY 163 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (493)
-||++.+.. ...+..+ ...++..|...|++|+.+....+.
T Consensus 85 ~~vv~~t~~----gd~H~lG--~~~v~~~l~~~G~~vi~LG~~vp~---------------------------------- 124 (197)
T TIGR02370 85 GKVVCGVAE----GDVHDIG--KNIVVTMLRANGFDVIDLGRDVPI---------------------------------- 124 (197)
T ss_pred CeEEEEeCC----CchhHHH--HHHHHHHHHhCCcEEEECCCCCCH----------------------------------
Confidence 468777751 2333333 556677888899999988665544
Q ss_pred ccchHHHHHHhcCCCCcEEEeC
Q 039338 164 SKGWEQFDEENQREPFDVVHSE 185 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~~DiI~~~ 185 (493)
..+.+.+.+.+||+|-+.
T Consensus 125 ----e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 125 ----DTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred ----HHHHHHHHHcCCCEEEEc
Confidence 566777778899998664
No 481
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=32.24 E-value=70 Score=31.48 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=24.6
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
|||++|... .-|. .....|++.||+|.++..-++.
T Consensus 1 mkiaiigqs------~fg~-----~vy~~lrk~gheiv~vftipdk 35 (881)
T KOG2452|consen 1 MKIAVIGQS------LFGQ-----EVYCHLRKEGHEVVGVFTVPDK 35 (881)
T ss_pred CeeEEechh------hhhH-----HHHHHHHhcCceEEEEEEecCC
Confidence 899999763 2343 4568899999998776554433
No 482
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.11 E-value=1.1e+02 Score=26.00 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCEEEeCCC-----CCCCCChHHHHHHHcCCcEEec-----CCCCCccceeeeCcceEEECC-CHHHHHHH
Q 039338 373 AELRAFYNAIDIFVNPTL-----RPQGLDLTLMEAMMSGKPVMAS-----RFPSIKGTIVVDDEFGFMFAP-NVESLHKT 441 (493)
Q Consensus 373 ~~~~~~~~~adv~v~ps~-----~~eg~~~~~~EAm~~G~PvI~s-----~~~~~~~e~v~~~~~G~~~~~-d~~~l~~~ 441 (493)
..+...+..||+.+.--. ..-.|.-.+-|.|-+++|+|++ ..+... ++-..+..-+++++ |-+.+...
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~-~ik~~~~v~v~lt~~NR~~i~~~ 170 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQ-RIKKLGGVYVFLTPENRNRILNE 170 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHH-HhhhcCCEEEEEccchhhHHHHH
Q ss_pred HHHHHHc
Q 039338 442 LEAAVSE 448 (493)
Q Consensus 442 i~~ll~~ 448 (493)
|..++..
T Consensus 171 Il~~L~~ 177 (179)
T COG1618 171 ILSVLKG 177 (179)
T ss_pred HHHHhcc
No 483
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.11 E-value=80 Score=30.23 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.5
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
.|||+++.. |.++ ..++..|.+.||+|+++....
T Consensus 4 ~m~I~iIG~--------G~mG---~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGA--------GAWG---TALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECc--------CHHH---HHHHHHHHHCCCeEEEEeCCH
Confidence 589999953 4433 447888889999999987743
No 484
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=31.95 E-value=66 Score=30.95 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=24.8
Q ss_pred ceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 83 TLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 83 ~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
.|||++|.. |.++. .++..|.+.||+|+++...
T Consensus 2 ~mkI~IiG~--------G~mG~---~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGA--------GSIGC---YLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECC--------CHHHH---HHHHHHHhcCCcEEEEecH
Confidence 388999954 44443 4778889999999998753
No 485
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=31.94 E-value=94 Score=23.99 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 039338 25 FIVIFTIPALFLLHTP 40 (493)
Q Consensus 25 ~~~~~~~~~~~~~~~~ 40 (493)
++++..+-+++++.+.
T Consensus 77 ~~vl~L~~~I~~~~~~ 92 (104)
T PF01307_consen 77 LLVLLLILLIYLSSRF 92 (104)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3333334444444443
No 486
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=31.90 E-value=40 Score=27.02 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=26.2
Q ss_pred HHHHHHHHcCEEEeCCCCCCCC--ChHHHH---HHHcCCcEEecCCC
Q 039338 374 ELRAFYNAIDIFVNPTLRPQGL--DLTLME---AMMSGKPVMASRFP 415 (493)
Q Consensus 374 ~~~~~~~~adv~v~ps~~~eg~--~~~~~E---Am~~G~PvI~s~~~ 415 (493)
.-..++..||++|.-. +|-+ =++.++ |.++|+|.|.-..+
T Consensus 68 RT~~li~~aDvvVvrF--GekYKQWNaAfDAg~aaAlgKplI~lh~~ 112 (144)
T TIGR03646 68 RTRKLIEKADVVIALF--GEKYKQWNAAFDAGYAAALGKPLIILRPE 112 (144)
T ss_pred HHHHHHhhCCEEEEEe--chHHHHHHHHhhHHHHHHcCCCeEEecch
Confidence 3456899999998743 2322 133444 57899999987643
No 487
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.80 E-value=1.1e+02 Score=22.34 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=26.5
Q ss_pred EEEEEeccCCCCCCCCchHHHH-HHHHHHHHhCCCEEEEEecC
Q 039338 85 KIAVFSRKWPISTTPGGMERHA-HTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~-~~l~~~L~~~G~~V~v~~~~ 126 (493)
||++++. ..=|.+..+ ..+-+.+.++|.++.+....
T Consensus 1 kIlvvC~------~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCG------SGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEES------SSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECC------ChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6888886 223555555 67888999999888887765
No 488
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=31.76 E-value=3.7e+02 Score=24.37 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=44.6
Q ss_pred hcCcEEEecCC-CHH---HHHHHHHHcCEEEe--CCCCCCCCChHHHHHHHcCCcEEecCCCCCccceeeeCcceEEECC
Q 039338 360 FGHQVLVMGSM-SPA---ELRAFYNAIDIFVN--PTLRPQGLDLTLMEAMMSGKPVMASRFPSIKGTIVVDDEFGFMFAP 433 (493)
Q Consensus 360 l~~~V~~~g~~-~~~---~~~~~~~~adv~v~--ps~~~eg~~~~~~EAm~~G~PvI~s~~~~~~~e~v~~~~~G~~~~~ 433 (493)
+.++|.+.|.. +++ ...+.++.+|++|. +|..-.++..-+-.|...|.|+|.-+..... .+....+.+..
T Consensus 152 lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~----~~~~~~~~i~~ 227 (242)
T PRK00481 152 LRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTP----LDSLFDLVIHG 227 (242)
T ss_pred cCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCC----CCCccCEEEEC
Confidence 33777777754 333 45667888999887 2322223322233456789999988765432 12234566664
Q ss_pred CHHHHHHHH
Q 039338 434 NVESLHKTL 442 (493)
Q Consensus 434 d~~~l~~~i 442 (493)
+.++....|
T Consensus 228 ~~~~~l~~l 236 (242)
T PRK00481 228 KAGEVVPEL 236 (242)
T ss_pred CHHHHHHHH
Confidence 555444444
No 489
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=31.74 E-value=98 Score=25.44 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=25.4
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEec
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTS 125 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~ 125 (493)
|||.+=++ .+|.+ .=..+.++|.++||+|.=+.+
T Consensus 1 MkI~IgsD-------h~G~~-lK~~i~~~L~~~G~eV~D~G~ 34 (141)
T TIGR01118 1 MAIIIGSD-------LAGKR-LKDVIKNFLVDNGFEVIDVTE 34 (141)
T ss_pred CEEEEEeC-------cchHH-HHHHHHHHHHHCCCEEEEcCC
Confidence 78887664 35655 356789999999999977654
No 490
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=31.74 E-value=4e+02 Score=24.40 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHhhCCCeEEEEEeC--CCcH-------HHHhhhc-CcEEEecCC-----CHHHHHHHHHHcCEEEeCC
Q 039338 325 GHPLLHEAFSKLMVKYPDVYLIVAGS--GPWE-------QRYKDFG-HQVLVMGSM-----SPAELRAFYNAIDIFVNPT 389 (493)
Q Consensus 325 g~~~ll~a~~~l~~~~~~~~l~i~G~--g~~~-------~~~~~l~-~~V~~~g~~-----~~~~~~~~~~~adv~v~ps 389 (493)
+-..+.+.+-++... ++-++.++.. ++.. +.+++++ ..|..+..- +.++..+.+..||++++..
T Consensus 12 ~~~~i~~~~~~lag~-~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 12 GDREILREFVSRAGG-EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTG 90 (250)
T ss_pred ChHHHHHHHHHHhCC-CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeC
Confidence 334455655544432 3446666642 2211 2223344 345444432 2345678889999988743
Q ss_pred C---------CCCCCChHHHHHHHcCCcEEecCCCCC
Q 039338 390 L---------RPQGLDLTLMEAMMSGKPVMASRFPSI 417 (493)
Q Consensus 390 ~---------~~eg~~~~~~EAm~~G~PvI~s~~~~~ 417 (493)
- +..+.--.+-|+...|+|++.+..|.+
T Consensus 91 Gnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 91 GDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 1 112333456788889999999876654
No 491
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=31.72 E-value=2.3e+02 Score=26.63 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHhhCCCeEEEEEeCCCc--HHHHhhhcCcEEEecC-CCHHHHHHHHHHcCEEEeC
Q 039338 325 GHPLLHEAFSKLMVKYPDVYLIVAGSGPW--EQRYKDFGHQVLVMGS-MSPAELRAFYNAIDIFVNP 388 (493)
Q Consensus 325 g~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~l~~~V~~~g~-~~~~~~~~~~~~adv~v~p 388 (493)
+.+-..+|+..+.++.++..++|++++.. ++.+......+.+.+. -+.+|+. +++.||.++.+
T Consensus 189 ~~~Yy~~Ai~~i~~~~~~~~f~ifSDD~~w~k~~l~~~~~~~~~~~~~~~~~Dl~-lms~C~~~Iis 254 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKVKNPKFFIFSDDIEWCKENLKFSNGDVYFSGNNSPYEDLY-LMSQCKHFIIS 254 (298)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHhhcCCcEEEECCCCHHHHHH-HHHhCCcEEEC
Confidence 35677899999998888999999998643 2233333355666665 4556665 68999999985
No 492
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=31.58 E-value=93 Score=30.80 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=29.5
Q ss_pred CceEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCCC
Q 039338 82 FTLKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPVD 128 (493)
Q Consensus 82 ~~mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 128 (493)
..+||++... .+.+...+..+++.|.+.|++|.|+.+...
T Consensus 5 ~~k~IllgvT-------Gsiaa~k~~~lv~~L~~~g~~V~vv~T~~A 44 (399)
T PRK05579 5 AGKRIVLGVS-------GGIAAYKALELVRRLRKAGADVRVVMTEAA 44 (399)
T ss_pred CCCeEEEEEe-------CHHHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 3467877764 133455678899999999999999887643
No 493
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=31.56 E-value=2.6e+02 Score=26.76 Aligned_cols=115 Identities=9% Similarity=0.126 Sum_probs=66.1
Q ss_pred CcEEEEEecccccccChHHHHHHHHHHHhhCCCeEEEEEeCCCcHHHHhhhcCcEEEecCCCHHHHHHHHHHcCEEEeC-
Q 039338 310 ASLVLGVAGRLVKDKGHPLLHEAFSKLMVKYPDVYLIVAGSGPWEQRYKDFGHQVLVMGSMSPAELRAFYNAIDIFVNP- 388 (493)
Q Consensus 310 ~~~~i~~~Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~l~~~V~~~g~~~~~~~~~~~~~adv~v~p- 388 (493)
..+.|+..|.. ....++|...|.+++-++.++ . +..+-+++.+.+.+..+..+.+|.-
T Consensus 202 ~ditiia~G~~-----v~~al~Aa~~L~~~Gi~~~VI--d--------------~~~ikPlD~~~i~~~~~~t~~vv~vE 260 (327)
T CHL00144 202 NDITILTYSRM-----RHHVLQAVKVLVEKGYDPEII--D--------------LISLKPLDLGTISKSVKKTHKVLIVE 260 (327)
T ss_pred CCEEEEEccHH-----HHHHHHHHHHHHhcCCCEEEE--e--------------cCcCCCCCHHHHHHHHHhhCcEEEEE
Confidence 33777777764 467788888887654334333 2 2234456767787888777665542
Q ss_pred -CCCCCCCChHHHHHHHcC------CcEEecCCCCCccceee-eCcceEEECCCHHHHHHHHHHHHHc
Q 039338 389 -TLRPQGLDLTLMEAMMSG------KPVMASRFPSIKGTIVV-DDEFGFMFAPNVESLHKTLEAAVSE 448 (493)
Q Consensus 389 -s~~~eg~~~~~~EAm~~G------~PvI~s~~~~~~~e~v~-~~~~G~~~~~d~~~l~~~i~~ll~~ 448 (493)
.....|+|-.+.|.++-. .|+..-..... .+. .+..-.++-.|.+.+++++.+++++
T Consensus 261 E~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~---~~~~~~~~~~~~gl~~~~I~~~i~~~l~~ 325 (327)
T CHL00144 261 ECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDV---PTPYNGPLEEATVIQPAQIIEAVEQIITN 325 (327)
T ss_pred CCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCC---cCCCCccHHHHhCCCHHHHHHHHHHHHhc
Confidence 112367888888887544 36654322221 111 1111111223888888888888765
No 494
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=31.56 E-value=84 Score=27.24 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHh-CCCEEEEEecCCCC
Q 039338 100 GGMERHAHTLHVALAR-RGHRVHIFTSPVDN 129 (493)
Q Consensus 100 gG~~~~~~~l~~~L~~-~G~~V~v~~~~~~~ 129 (493)
+.+......+++.|.+ .|++|.++.+....
T Consensus 11 siaa~ka~~l~~~L~k~~g~~V~vv~T~~A~ 41 (185)
T PRK06029 11 ASGAIYGVRLLQVLRDVGEIETHLVISQAAR 41 (185)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEECHHHH
Confidence 3345668899999999 59999999876544
No 495
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.55 E-value=3.9e+02 Score=24.02 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=31.7
Q ss_pred hcCcEEEecCCCHHHHHHHHHHcCEEEeCCCCCCCCChHHHHHHHcCCcEEec-CCCCCc
Q 039338 360 FGHQVLVMGSMSPAELRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS-RFPSIK 418 (493)
Q Consensus 360 l~~~V~~~g~~~~~~~~~~~~~adv~v~ps~~~eg~~~~~~EAm~~G~PvI~s-~~~~~~ 418 (493)
+.+.+.|...... |++|.-... |. ..+++||.-+++|+|+- |....+
T Consensus 162 ~pd~~~f~~t~~~----------D~vvvln~~-e~-~sAilEA~K~~IPTIgIVDtN~~P 209 (251)
T KOG0832|consen 162 LPDALCFLPTLTP----------DLVVVLNPE-EN-HSAILEAAKMAIPTIGIVDTNCNP 209 (251)
T ss_pred CCcceeecccCCc----------ceeEecCcc-cc-cHHHHHHHHhCCCeEEEecCCCCc
Confidence 3466777776643 777765432 44 45999999999999985 333344
No 496
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=31.53 E-value=38 Score=22.73 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=14.3
Q ss_pred hHHHHHHHcCCcEEec
Q 039338 397 LTLMEAMMSGKPVMAS 412 (493)
Q Consensus 397 ~~~~EAm~~G~PvI~s 412 (493)
-.+.|++..|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4799999999999986
No 497
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=31.45 E-value=1.3e+02 Score=27.11 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=24.5
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCC-CEEEEEecCC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRG-HRVHIFTSPV 127 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~ 127 (493)
|||++... ...|-...+..|+..|.++| ++|.++-.+.
T Consensus 1 mkIaI~GK------GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 1 MKIAITGK------GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred CeEEEecC------CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 77887754 23343444444466666665 9999998776
No 498
>PRK06953 short chain dehydrogenase; Provisional
Probab=31.36 E-value=64 Score=28.56 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=23.9
Q ss_pred eEEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecC
Q 039338 84 LKIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSP 126 (493)
Q Consensus 84 mkIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 126 (493)
||.++|+. ..||.+ ..+++.|.++|++|.++...
T Consensus 1 ~~~vlvtG------~sg~iG---~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVG------ASRGIG---REFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEc------CCCchh---HHHHHHHHhCCCEEEEEECC
Confidence 56666764 345555 44888888999999887654
No 499
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=31.35 E-value=78 Score=32.26 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=27.3
Q ss_pred CCchHHHHHHHHHHHHhCCCEEEEEecCCCC
Q 039338 99 PGGMERHAHTLHVALARRGHRVHIFTSPVDN 129 (493)
Q Consensus 99 ~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 129 (493)
..|.-..+..+++.|+++||+|++++.....
T Consensus 15 ~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~ 45 (496)
T KOG1192|consen 15 GQSHLNPMLQLAKRLAERGHNVTVVTPSFNA 45 (496)
T ss_pred cccHHHHHHHHHHHHHHcCCceEEEEeechh
Confidence 4788889999999999999999999987654
No 500
>PRK05569 flavodoxin; Provisional
Probab=31.31 E-value=1.5e+02 Score=23.99 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=27.5
Q ss_pred EEEEEeccCCCCCCCCchHHHHHHHHHHHHhCCCEEEEEecCC
Q 039338 85 KIAVFSRKWPISTTPGGMERHAHTLHVALARRGHRVHIFTSPV 127 (493)
Q Consensus 85 kIl~v~~~~p~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~ 127 (493)
||+++-.+ ..|..+..+..+++.+.+.|.+|.++....
T Consensus 3 ki~iiY~S-----~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~ 40 (141)
T PRK05569 3 KVSIIYWS-----CGGNVEVLANTIADGAKEAGAEVTIKHVAD 40 (141)
T ss_pred eEEEEEEC-----CCCHHHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 56665542 457778888888999988999988775443
Done!