BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039340
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 111/278 (39%), Gaps = 14/278 (5%)
Query: 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALK 87
S V + KAT H+ ++++D ++Q V A + +R + +W+V K
Sbjct: 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFK 84
Query: 88 SLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147
SL+ + G+ F + +A R F NLSNF D S +D + F+R ++ YL+E
Sbjct: 85 SLITTHHLMVYGNERFIQYLA---SRNTLF-NLSNFLDKSGLQGYDMSTFIRRYSRYLNE 140
Query: 148 RLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTG 207
+ + ++ F+ R + R+ M LL + Q +D +
Sbjct: 141 KAVSY--RQVAFDFTKVKRGADGVMRT------MNTEKLLKTVPIIQNQMDALLDFNVNS 192
Query: 208 AAKNNSLVQVSLYAIVQESFDLYRDIXXXXXXXXXXXXHLQYHNCVSAFQACVKASKQFE 267
N ++ + + +++ L+ ++ + C K +
Sbjct: 193 NELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMT 252
Query: 268 ELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFL 305
+S F + + G+ R + P + + L++ L++ L
Sbjct: 253 RISEFLKVAEQVGIDR-GDIPDLSQAPSSLLDALEQHL 289
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALK 87
S V + KAT H+ ++++D ++Q V A + +R + +W+V K
Sbjct: 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFK 84
Query: 88 SLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147
SL+ + G+ F + +A NLSNF D S +D + F+R ++ YL+E
Sbjct: 85 SLITTHHLMVYGNERFIQYLASR----NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNE 140
Query: 148 R 148
+
Sbjct: 141 K 141
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALK 87
S V + KAT H+ ++++D ++Q V A + +R + +W+V K
Sbjct: 19 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFK 77
Query: 88 SLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147
SL+ + G+ F + +A R F NLSNF D S +D + F+R ++ YL+E
Sbjct: 78 SLITTHHLMVYGNERFIQYLA---SRNTLF-NLSNFLDKSGLQGYDMSTFIRRYSRYLNE 133
Query: 148 R 148
+
Sbjct: 134 K 134
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALK 87
S V + KAT H+ ++++D ++Q V A + +R + +W+V K
Sbjct: 26 GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFK 84
Query: 88 SLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147
SL+ + G+ F + +A R F NLSNF D S +D + F+R ++ YL+E
Sbjct: 85 SLITTHHLMVYGNERFIQYLA---SRNTLF-NLSNFLDKSGLQGYDMSTFIRRYSRYLNE 140
Query: 148 R 148
+
Sbjct: 141 K 141
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 35 ILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLR 94
+ KAT + ++++D ++ V A ++ +R + NW+V KSL+
Sbjct: 28 VCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIER-SQNANWVVVYKSLITTHH 86
Query: 95 IFQDGDPYFPREVA--HAMKRGQKFLNLSNFRDDSNSSP-----WDYTAFVRTFALYLDE 147
+ G+ F + +A ++ FL+ +D P +D + F+R +A YL+E
Sbjct: 87 LMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNE 146
Query: 148 R 148
+
Sbjct: 147 K 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,551,707
Number of Sequences: 62578
Number of extensions: 390992
Number of successful extensions: 777
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 5
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)