Query 039340
Match_columns 419
No_of_seqs 133 out of 454
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 9.4E-71 2E-75 570.9 28.0 295 7-313 1-296 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 1.2E-65 2.6E-70 502.8 20.2 275 29-308 2-280 (280)
3 KOG0980 Actin-binding protein 100.0 2E-47 4.3E-52 405.7 16.4 267 29-309 5-278 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 1.4E-32 3E-37 237.4 11.8 117 31-152 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 3.7E-28 8.1E-33 212.4 10.6 123 29-155 1-123 (127)
6 PF01417 ENTH: ENTH domain; I 99.3 2.4E-11 5.2E-16 106.0 9.8 116 29-149 2-119 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 8.5E-11 1.8E-15 100.8 9.0 112 31-148 1-112 (115)
8 cd03571 ENTH_epsin ENTH domain 98.8 1.9E-08 4.1E-13 87.9 9.1 114 31-149 2-116 (123)
9 KOG2056 Equilibrative nucleosi 98.0 2.5E-05 5.5E-10 78.5 9.7 129 9-147 5-134 (336)
10 cd03572 ENTH_epsin_related ENT 97.8 6.2E-05 1.3E-09 65.8 7.5 111 34-148 5-116 (122)
11 KOG2057 Predicted equilibrativ 95.8 0.025 5.3E-07 56.8 7.1 117 27-147 20-139 (499)
12 cd03569 VHS_Hrs_Vps27p VHS dom 95.6 0.075 1.6E-06 47.6 8.7 78 29-107 3-80 (142)
13 cd03567 VHS_GGA VHS domain fam 95.5 0.074 1.6E-06 47.6 8.5 76 31-107 2-77 (139)
14 cd03568 VHS_STAM VHS domain fa 95.5 0.061 1.3E-06 48.3 8.0 76 31-107 1-76 (144)
15 PF00790 VHS: VHS domain; Int 95.5 0.059 1.3E-06 47.9 7.7 79 28-107 3-81 (140)
16 smart00288 VHS Domain present 94.9 0.13 2.7E-06 45.5 8.0 76 31-107 1-76 (133)
17 cd03565 VHS_Tom1 VHS domain fa 94.9 0.15 3.3E-06 45.6 8.6 77 31-107 2-78 (141)
18 cd03561 VHS VHS domain family; 94.6 0.2 4.3E-06 44.1 8.4 75 32-107 2-76 (133)
19 KOG2199 Signal transducing ada 79.7 7.2 0.00016 40.7 7.8 79 28-107 6-84 (462)
20 KOG2675 Adenylate cyclase-asso 73.3 28 0.00061 36.8 10.1 64 221-291 158-221 (480)
21 KOG0414 Chromosome condensatio 62.5 2E+02 0.0044 34.3 14.9 174 67-258 359-564 (1251)
22 KOG1087 Cytosolic sorting prot 60.3 30 0.00064 37.2 7.5 72 31-103 2-73 (470)
23 KOG2675 Adenylate cyclase-asso 52.7 1.8E+02 0.004 30.9 11.5 33 248-280 100-132 (480)
24 KOG3771 Amphiphysin [Intracell 46.2 1.1E+02 0.0025 32.6 9.0 26 73-98 46-72 (460)
25 KOG4166 Thiamine pyrophosphate 35.6 26 0.00056 37.3 2.3 66 330-399 37-106 (675)
26 PF02184 HAT: HAT (Half-A-TPR) 33.7 33 0.00072 23.1 1.8 26 252-277 3-28 (32)
27 KOG1086 Cytosolic sorting prot 33.1 1.4E+02 0.0031 31.9 7.1 82 28-110 6-87 (594)
28 cd06895 PX_PLD The phosphoinos 29.0 78 0.0017 28.3 4.0 28 285-312 89-125 (140)
29 cd01204 IRS_PTB Insulin recept 26.7 14 0.0003 31.3 -1.1 18 401-418 73-90 (104)
30 KOG1915 Cell cycle control pro 23.3 80 0.0017 34.2 3.4 65 184-277 151-215 (677)
31 PF02042 RWP-RK: RWP-RK domain 22.8 84 0.0018 23.5 2.5 36 239-283 8-43 (52)
32 PF08891 YfcL: YfcL protein; 20.3 1.2E+02 0.0025 25.1 3.1 47 8-55 26-79 (85)
33 cd07296 PX_PLD1 The phosphoino 20.2 73 0.0016 28.5 2.1 53 259-312 45-120 (135)
34 PF08832 SRC-1: Steroid recept 20.1 56 0.0012 26.5 1.2 10 91-100 58-67 (78)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-71 Score=570.88 Aligned_cols=295 Identities=41% Similarity=0.677 Sum_probs=271.4
Q ss_pred HHHHHhhhhhhhhhhhhcCCCCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHH
Q 039340 7 KAIGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVAL 86 (419)
Q Consensus 7 ~a~g~~kd~~s~~~A~~~~~~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiVal 86 (419)
+|+|++||++|+|+|++++ ...++++||+|||+|++.|||+|||+.|+.+|+.+++++++|+.+|.+||++||||+||+
T Consensus 1 ~~~gaiKD~~s~~~a~v~~-~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VAl 79 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVAS-AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVAL 79 (491)
T ss_pred CCccccchhhhhHHHHhhh-hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeehH
Confidence 4799999999999999976 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchHHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhHHhcCCccccccccc
Q 039340 87 KSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGR 166 (419)
Q Consensus 87 K~LivlHrLlreG~p~~~~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g~l~~~f~~~~~ 166 (419)
|+|||||+||++|++.|.+++.++ ++.|+|++|+|++++.+|+|++|||+|++||+||+.||+..+++...+..+
T Consensus 80 KsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~- 154 (491)
T KOG0251|consen 80 KALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG- 154 (491)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc-
Confidence 999999999999999999887643 368999999999988899999999999999999999999877654322111
Q ss_pred cCcccccCCCccccCC-HHHHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039340 167 RNGRIERSYAPVCEMK-PIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFF 245 (419)
Q Consensus 167 ~~~~~~~~~~~~~~l~-~~~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ff 245 (419)
.. ....+++. .+.+|+.++.||.|++++++|+|.+.+++|.||++||.+||+|||+||+++|+||++|||+||
T Consensus 155 ---~~---k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekff 228 (491)
T KOG0251|consen 155 ---KE---KTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFF 228 (491)
T ss_pred ---cc---ccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01 12344444 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhcccCCCCC
Q 039340 246 HLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQASFPA 313 (419)
Q Consensus 246 em~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d~~~~~~ 313 (419)
+|++.||.++|+||+||.+|+++|.+||++||++|+.+..+||+|+++|.+++++|||||++.+....
T Consensus 229 em~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~ 296 (491)
T KOG0251|consen 229 EMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKA 296 (491)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999986554
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=1.2e-65 Score=502.84 Aligned_cols=275 Identities=36% Similarity=0.599 Sum_probs=214.8
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVA 108 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~ 108 (419)
+++++||+|||+|+++|||+|||++||.+||+ +.++++++|+|.+|++.++||+|+||+|||+|||||||||+|.+++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-PESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-TS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-CccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 68999999999999999999999999999999 78889999999999999999999999999999999999999998887
Q ss_pred HHHhcCCccccccCCcC--CCCCCCCchhHHHHHHHHHHHHHHHhHHhcCCc-cccccccccCc-ccccCCCccccCCHH
Q 039340 109 HAMKRGQKFLNLSNFRD--DSNSSPWDYTAFVRTFALYLDERLDCFITGKLH-KRFSNRGRRNG-RIERSYAPVCEMKPI 184 (419)
Q Consensus 109 ~~~~~~~~~l~L~~f~d--~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g~l~-~~f~~~~~~~~-~~~~~~~~~~~l~~~ 184 (419)
++ ..++++++++|+ .+++.+|+|+.|||+|++||++|+.||+..+.+ +.+...+.... ..++.... ..++++
T Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 156 (280)
T PF07651_consen 81 RY---NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSR-KSLDID 156 (280)
T ss_dssp HT---T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC--C--HH
T ss_pred Hc---ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCcccc-ccccHH
Confidence 54 345677777776 556678999999999999999999999985543 33333222110 01111111 467789
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHH
Q 039340 185 MLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASK 264 (419)
Q Consensus 185 ~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~aleiykrf~~ 264 (419)
++|+.++.+|++++++++|+|.+..++|+|+++||++||+||++||+++|+||++|+++||+|++.||.+++++|+||.+
T Consensus 157 ~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~~ 236 (280)
T PF07651_consen 157 DLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFAK 236 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhccc
Q 039340 265 QFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQ 308 (419)
Q Consensus 265 Q~~~L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d~ 308 (419)
|+++|++||++|+++++++..+||.|+++|++|+++||||++|+
T Consensus 237 q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~~ 280 (280)
T PF07651_consen 237 QTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRDP 280 (280)
T ss_dssp HHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC-
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999987789999999999999999999984
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=2e-47 Score=405.73 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=226.9
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVA 108 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~ 108 (419)
..+.+||.|||+.+|+|||+||||+||++||+++++. +||+..+|++..++.|.+||+|||+|||||||||+++.|++
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa~--~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~es~ 82 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKSSK--IFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEESQ 82 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeecccccch--hHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 5688999999999999999999999999999999976 59999999999999999999999999999999999999998
Q ss_pred HHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhHHhcC-CccccccccccCcccccCCCccccCCH--HH
Q 039340 109 HAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGK-LHKRFSNRGRRNGRIERSYAPVCEMKP--IM 185 (419)
Q Consensus 109 ~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g~-l~~~f~~~~~~~~~~~~~~~~~~~l~~--~~ 185 (419)
+| +.++..++.+|++.+ .|||.+||.|++||..|+.||.+.. |.|.|.+.++......+|-+..++|++ ++
T Consensus 83 r~---r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvdmmd 156 (980)
T KOG0980|consen 83 RY---KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVDMMD 156 (980)
T ss_pred HH---HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHHHHH
Confidence 76 447999999998753 5899999999999999999998753 555666655543333335566778776 36
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHH
Q 039340 186 LLDRISNWQRLLDRAIGSKPTG-AAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASK 264 (419)
Q Consensus 186 LLd~l~~lQ~Lid~ll~~~p~~-~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~aleiykrf~~ 264 (419)
++|.+..||..|++.+...+.. ....+.|.+++|++||+||++||++++.+|.+| +..-++|++.||+ .||..
T Consensus 157 ~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkL----Hs~vp~dtLeghR--dRf~~ 230 (980)
T KOG0980|consen 157 YMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKL----HSQVPPDTLEGHR--DRFHT 230 (980)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHH----HcCCCHHHhhhHH--HHHHH
Confidence 6777777888888888754433 345678899999999999999999996666554 6666799999986 99999
Q ss_pred HHHHHHHHHHHhhccCCc-cCccCCCCCCCCHHHHHH--HHHhhcccC
Q 039340 265 QFEELSSFYDLCKGTGVG-RTSEYPSVQKVSEELIET--LQEFLKDQA 309 (419)
Q Consensus 265 Q~~~L~~Fy~~ck~l~~~-~~i~iP~L~~~P~~ll~~--LEe~l~d~~ 309 (419)
||++|++||+.|++++|+ ++|+||.||+.||||+.. |++|+.-.-
T Consensus 231 qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~pvv 278 (980)
T KOG0980|consen 231 QFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYITPVV 278 (980)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCCCce
Confidence 999999999999999998 789999999999999984 999876433
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.98 E-value=1.4e-32 Score=237.40 Aligned_cols=117 Identities=42% Similarity=0.684 Sum_probs=108.8
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHA 110 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~~~ 110 (419)
++++|+|||+|+++|||+|||++||.+|++++.++.+++++|.+|+.. +||+|+||+|+|+|+|||||+|+|.++++.+
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~~~ 79 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELLSR 79 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 579999999999999999999999999999888899999999999998 8999999999999999999999999887643
Q ss_pred HhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhH
Q 039340 111 MKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCF 152 (419)
Q Consensus 111 ~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~ 152 (419)
..+|++.+|.+.+.+.+|+|+.|||.|++||++|++||
T Consensus 80 ----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 80 ----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred ----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 57899999998876678999999999999999999886
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=3.7e-28 Score=212.37 Aligned_cols=123 Identities=33% Similarity=0.421 Sum_probs=112.1
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVA 108 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~ 108 (419)
++++++|+|||++++.|||+||+++|+.+|++++..+.+|+..|.+||.++++|+|+||+|+|+|+||++|++.++.+.+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~~~ 80 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILEAL 80 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46899999999999999999999999999999988899999999999999779999999999999999999999987765
Q ss_pred HHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhHHhc
Q 039340 109 HAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITG 155 (419)
Q Consensus 109 ~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g 155 (419)
+++..+++|++|++. ++.+++|+.|||.|++||++|+.++...
T Consensus 81 ---~~~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l 123 (127)
T smart00273 81 ---RNRNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRL 123 (127)
T ss_pred ---HhhHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHH
Confidence 345679999999986 4578999999999999999999988753
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.27 E-value=2.4e-11 Score=106.02 Aligned_cols=116 Identities=25% Similarity=0.265 Sum_probs=92.4
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhh--ccCCchHHHHHHHHHHHHHHhcCCCcchHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRI--GKTRNWIVALKSLMLVLRIFQDGDPYFPRE 106 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL--~~t~~wiValK~LivlHrLlreG~p~~~~e 106 (419)
+++|+-|.+||+.++.+|..+++..|...|+++ ..+..++..|.+|| ...++|.+++|+|.++|.|++.|++.|..+
T Consensus 2 s~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 2 SELELKVREATSNDPWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 578999999999999999999999999999998 55677899999999 335799999999999999999999999988
Q ss_pred HHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHH
Q 039340 107 VAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 107 ~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl 149 (419)
+..+ -..+..+.+|.. ....+.+++.-||..|+-+.+-|
T Consensus 81 ~~~~---~~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 81 LRDH---IDIIRELQDFQY-VDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HHHT---HHHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHh
Confidence 7532 234677788865 22356788899999999998765
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.19 E-value=8.5e-11 Score=100.80 Aligned_cols=112 Identities=29% Similarity=0.267 Sum_probs=91.9
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHA 110 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~~~ 110 (419)
+++.|.|||+++...|+.+++.+|...++........++.+|.+||.. ++|.|++|+|.++|.|+..|++.|..++.
T Consensus 1 ~~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvkN~g~~f~~~i~-- 77 (115)
T cd00197 1 FEKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVKNCGERFHQEVA-- 77 (115)
T ss_pred ChHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHHHHHHHH--
Confidence 368899999999999999999999999988877788899999999997 69999999999999999999999987653
Q ss_pred HhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHH
Q 039340 111 MKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDER 148 (419)
Q Consensus 111 ~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eR 148 (419)
++....++.+| +.....+.+.+..||.++++|.+.
T Consensus 78 --~~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 78 --SNDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred --HhHHHHHHHHh-hccccccCCCChHHHHHHHHHHHH
Confidence 23334445444 222223456789999999999875
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=98.82 E-value=1.9e-08 Score=87.95 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=89.7
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccC-CchHHHHHHHHHHHHHHhcCCCcchHHHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKT-RNWIVALKSLMLVLRIFQDGDPYFPREVAH 109 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t-~~wiValK~LivlHrLlreG~p~~~~e~~~ 109 (419)
.|+-|..||+.+..+|..+++..|-.+|++.. .+..++..|.+||.+. ++|.+++|+|+|++-|++.|.+.|..++..
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~-~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNYV-EFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57889999999999999999999999999864 4566899999999873 699999999999999999999999888753
Q ss_pred HHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHH
Q 039340 110 AMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 110 ~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl 149 (419)
.. ..+-.|..|.-- ...+.+.|.-||.=|+-+.+-|
T Consensus 81 ~~---~~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 81 NL---YIIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred hH---HHHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 32 123445555421 1134578888998777666543
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.02 E-value=2.5e-05 Score=78.53 Aligned_cols=129 Identities=21% Similarity=0.178 Sum_probs=95.7
Q ss_pred HHHhhhhhhhhhhhhcCCCCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhcc-CCchHHHHH
Q 039340 9 IGAVKDQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGK-TRNWIVALK 87 (419)
Q Consensus 9 ~g~~kd~~s~~~A~~~~~~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~-t~~wiValK 87 (419)
+..+|++++-.+=+ .++.+..|.-||+.+.-.|--+++.+|-.+|+.... +.+|+..|.+|+.+ -++|.+++|
T Consensus 5 ~~~l~Rqakn~v~~-----y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e-~~eIm~vi~kRl~d~gknWR~VyK 78 (336)
T KOG2056|consen 5 FRDLKRQAKNFIKN-----YSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVE-YQEIMDVLWKRLNDSGKNWRHVYK 78 (336)
T ss_pred HHHHHHHHHHHHhc-----chHHHHHHHhccccccCCCchHHHHHHHHHhcCHHH-HHHHHHHHHHHHhhccchHHHHHH
Confidence 34566666655554 377899999999999999999999999999998744 55799999999987 569999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHH
Q 039340 88 SLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147 (419)
Q Consensus 88 ~LivlHrLlreG~p~~~~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~e 147 (419)
+|.||--||..|+++|.+++...+. .+--|..|.-- ...+.+.+.-||.=++-|..
T Consensus 79 aLtlleyLl~~GSErv~~~~ren~~---~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~ 134 (336)
T KOG2056|consen 79 ALTLLEYLLKNGSERVVDETRENIY---TIETLKDFQYI-DEDGKDQGLNVRKKAKELLS 134 (336)
T ss_pred HHHHHHHHHhcCcHHHHHHHHhhhH---HHHHHhhceee-CCCCccchHHHHHHHHHHHH
Confidence 9999999999999999887642211 12223334311 11245666778877766543
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=97.82 E-value=6.2e-05 Score=65.79 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=85.4
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHHHHHhc
Q 039340 34 LILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAHAMKR 113 (419)
Q Consensus 34 AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~~~~~~ 113 (419)
.|.+||+.++.||=-==.++|...|+.+...+..+...|.+||.. ++..|-+|+|=+|-.|++.|++.|..++.+..
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~-- 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS-- 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH--
Confidence 578999999655544334588899999877888899999999997 67888899999999999999999987765432
Q ss_pred CCccccccCCcCCCCC-CCCchhHHHHHHHHHHHHH
Q 039340 114 GQKFLNLSNFRDDSNS-SPWDYTAFVRTFALYLDER 148 (419)
Q Consensus 114 ~~~~l~L~~f~d~s~~-~~~~ys~fIR~Ya~YL~eR 148 (419)
..+..+.+|+..-.. .|++.+..||.=|+=|.+-
T Consensus 82 -~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 82 -AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred -HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 235556777764332 5678889999777666543
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.025 Score=56.81 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=85.0
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCC-CccHHHHHHHHHhhhcc--CCchHHHHHHHHHHHHHHhcCCCcc
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASS-KVYAVACAQVISKRIGK--TRNWIVALKSLMLVLRIFQDGDPYF 103 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~-~~~~~~~~~~L~~RL~~--t~~wiValK~LivlHrLlreG~p~~ 103 (419)
+.++.+.-|.-||+.|.-.|----..+|--+|+.- -..+..+...|..|+-+ -.+|.-++|+||++--||+.|.+.|
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~ 99 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERF 99 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 45788999999999998888888888888888641 12345677888888754 3489999999999999999999999
Q ss_pred hHHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHH
Q 039340 104 PREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDE 147 (419)
Q Consensus 104 ~~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~e 147 (419)
+++...+... .+-++--+|.|+. +.+.+.-||.-.+-|.|
T Consensus 100 VqeAREh~Yd-LR~LEnYhfiDEh---GKDQGINIR~kVKeilE 139 (499)
T KOG2057|consen 100 VQEAREHAYD-LRRLENYHFIDEH---GKDQGINIRHKVKEILE 139 (499)
T ss_pred HHHHHHHHHH-HHhhhhccchhhh---CccccccHHHHHHHHHH
Confidence 9887543221 1122333566664 44677778877776654
No 12
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.58 E-value=0.075 Score=47.63 Aligned_cols=78 Identities=28% Similarity=0.247 Sum_probs=67.9
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
+.++..|.|||+....-|+--.+-.|.-.....+.....++++|.+||.. +|..|++-+|.++--++..+...|..++
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 56899999999999888898998888888877777778899999999986 8999999999999999998766666554
No 13
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.55 E-value=0.074 Score=47.58 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
++..|.|||+....-|+--++-.|.-.+...+.....++++|.+||.. +|.-|++-+|.++--++..+.+.|..++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 688999999999999999999998888877666677889999999985 7999999999999999998877776554
No 14
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.54 E-value=0.061 Score=48.33 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
++..|.|||+....-|+--.+-.|--...........++++|.+||.. +|..|++.+|.++--++..+...|..|+
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 467899999999888898888888777776666778899999999986 7999999999999999999888777665
No 15
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.48 E-value=0.059 Score=47.87 Aligned_cols=79 Identities=34% Similarity=0.329 Sum_probs=66.6
Q ss_pred CchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 28 ~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
.+.++..|.|||++...-|+--.+-.|.-..........+++++|.+||.. ++.-|.+-+|.++.-++..|.+.|..++
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~-~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH-GNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 367899999999999888888888888888887777778899999999997 7999999999999999999887776554
No 16
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.95 E-value=0.13 Score=45.52 Aligned_cols=76 Identities=32% Similarity=0.262 Sum_probs=65.5
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
++..|.|||+....-|+--.+-.|.-.....+.....++++|.+||.. +|..|++.+|.++--++..+.+.|..++
T Consensus 1 ~~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 1 VERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred ChhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 367899999999888898888888888877776777899999999995 8999999999999999999777776554
No 17
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=94.91 E-value=0.15 Score=45.58 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=66.2
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
++..|.|||+....-|+--.+-.|--...........++++|.+||...+|..|++-+|.++--++..+...|..|+
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 46789999999988888888888877777766677889999999997556899999999999999999888887665
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.59 E-value=0.2 Score=44.14 Aligned_cols=75 Identities=25% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 32 EVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 32 e~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
+..|.|||+....-|+-.-+-+|.-.....+....+++++|.+||.. +|..|.+-+|.++--++..+.+.|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 56799999998888898888888888887777778899999999996 7999999999999999999887776554
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.73 E-value=7.2 Score=40.66 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=56.8
Q ss_pred CchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 28 ~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
.+.++..|.|||+...+-=+=-++-.+--.+.+.+..-..|+.+|.+||.. ++.-|++-+|-++--+.......|..|+
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~-~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNH-KDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 467899999999998875444454444333333333445799999999985 7999999999999888765555555544
No 20
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=73.34 E-value=28 Score=36.78 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccCCCCC
Q 039340 221 AIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQ 291 (419)
Q Consensus 221 lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~~~~~i~iP~L~ 291 (419)
+-|+|...-=.+++..| |-.|-+ ..+... |-.|.|...+.+|.+|.+.-.-.|+.-..+=|..+
T Consensus 158 p~vke~~daa~FY~Nrv---LkEyk~-~D~~hv---eWvKa~l~l~~eL~~YVk~hhtTGl~W~~~g~~~~ 221 (480)
T KOG2675|consen 158 PYVKEFKDAAQFYTNRV---LKEYKE-KDPRHV---EWVKAYLALFLELQAYVKEHHTTGLVWNKDGGAAP 221 (480)
T ss_pred hHHHHHHHHHHHHHHHH---HHHhcc-CChhHH---HHHHHHHHHHHHHHHHHHHhccccceecCCCCccc
Confidence 35666666666665433 222332 222333 33478889999999999988888885333444443
No 21
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.50 E-value=2e+02 Score=34.31 Aligned_cols=174 Identities=15% Similarity=0.175 Sum_probs=92.9
Q ss_pred HHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCC--cchHHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHH
Q 039340 67 ACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDP--YFPREVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALY 144 (419)
Q Consensus 67 ~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p--~~~~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~Y 144 (419)
++...|..|+.+. +.-|-.|.|-+.|++.+.-.- ....+++. +-.+..- |=+.+||.|+-=
T Consensus 359 ~~le~l~erl~Dv-sa~vRskVLqv~~~l~~~~s~p~~~~~eV~~--------la~grl~--------DkSslVRk~Ai~ 421 (1251)
T KOG0414|consen 359 ELLELLRERLLDV-SAYVRSKVLQVFRRLFQQHSIPLGSRTEVLE--------LAIGRLE--------DKSSLVRKNAIQ 421 (1251)
T ss_pred HHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHccCCCccHHHHHHH--------HHhcccc--------cccHHHHHHHHH
Confidence 4678899999974 999999999999999987542 23333321 1112222 345889999988
Q ss_pred HHHHHHhHHh--cCCcc-c----ccc---------ccccCcccccCCCccccCCHHHHHHHHHHHH----HHHHHHHcCC
Q 039340 145 LDERLDCFIT--GKLHK-R----FSN---------RGRRNGRIERSYAPVCEMKPIMLLDRISNWQ----RLLDRAIGSK 204 (419)
Q Consensus 145 L~eRl~f~~~--g~l~~-~----f~~---------~~~~~~~~~~~~~~~~~l~~~~LLd~l~~lQ----~Lid~ll~~~ 204 (419)
|...+--+.+ .++.. + ++. ++..+. .++.....+......+++..+.-+ .+......+.
T Consensus 422 Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l-~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~ 500 (1251)
T KOG0414|consen 422 LLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHL-EEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQ 500 (1251)
T ss_pred HHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhccccccc-chhhccchhhhhcccceeechhhhhhhccccccccccc
Confidence 8776533221 00100 0 000 000000 000111111112223333333322 1111111221
Q ss_pred C---------CCccccChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHH
Q 039340 205 P---------TGAAKNNSLVQ-VSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQA 258 (419)
Q Consensus 205 p---------~~~~~~N~li~-~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~alei 258 (419)
+ .....+|.+++ .+++.-++|.++.-+.+.+++-.++.-.|.=...|..++.+.
T Consensus 501 ~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idf 564 (1251)
T KOG0414|consen 501 EEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDF 564 (1251)
T ss_pred hhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 1 01112344543 466667799999999999999998888887777777776653
No 22
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.27 E-value=30 Score=37.17 Aligned_cols=72 Identities=29% Similarity=0.222 Sum_probs=52.6
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcc
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYF 103 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~ 103 (419)
+.+.|-|||+..-.-|+=-..=+|=-.+....+...+.+++|.+|+.. ++..|++=+|.+|--|+......|
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~f 73 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSF 73 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHH
Confidence 467899999999777776555555445555555566889999999997 556788889998887776544344
No 23
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=52.71 E-value=1.8e+02 Score=30.94 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=23.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 039340 248 QYHNCVSAFQACVKASKQFEELSSFYDLCKGTG 280 (419)
Q Consensus 248 ~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~ 280 (419)
.+++..+..+.++.+.++.-++..|=+.=|...
T Consensus 100 qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~ 132 (480)
T KOG2675|consen 100 QKPDSNELADLLKPINEEIGEINNFKEKNRKSP 132 (480)
T ss_pred cCCChHHHHHHhhhHHHhhhHHhhhhhcccCch
Confidence 466777777788888888888877655544333
No 24
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.19 E-value=1.1e+02 Score=32.58 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=19.5
Q ss_pred Hhhhcc-CCchHHHHHHHHHHHHHHhc
Q 039340 73 SKRIGK-TRNWIVALKSLMLVLRIFQD 98 (419)
Q Consensus 73 ~~RL~~-t~~wiValK~LivlHrLlre 98 (419)
.+||.+ .++|.-+.++++-.-+.|+|
T Consensus 46 ~~kLqkd~k~y~~av~am~~a~~~l~e 72 (460)
T KOG3771|consen 46 GKRLQKDLKNYLDAVRAMLAASKKLAE 72 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 56899999999888888775
No 25
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=35.64 E-value=26 Score=37.27 Aligned_cols=66 Identities=30% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCCCCccCCCCccc-ccc-CCCCCccCccccccCCCCCCccccCCCCCCCCcc--hhhccccccccchhhHhH
Q 039340 330 PGSSSDRVGLSSSLA-IVP-ATNAFSVAPTFSAQNPSQGGTTFENKDDPFGPCL--DISADKHVAAESVDQNLL 399 (419)
Q Consensus 330 ~~~~~~~~~~s~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 399 (419)
.+|||++||.|++-+ +-| ++++|.|+||=|.-.|+. +.++-. ||+|-- -.-+.+.++|+-|.-|++
T Consensus 37 ~sSssRryg~s~sp~s~~~~l~~~fnV~~~~sp~~psk-~~t~~s---~~~~D~sfvg~tGg~If~emm~rqnV 106 (675)
T KOG4166|consen 37 SSSSSRRYGISSSPSSISAVLNTTFNVTTTPSPTKPSK-PETFIS---RFAPDQSFVGRTGGDIFVEMMERQNV 106 (675)
T ss_pred cccchhccccCCCchhcccccccccccccCCCCCCCCC-cccccc---cCCCcccccCCchhHHHHHHHHhcCC
Confidence 457899999887544 444 778899999998888874 333332 333311 113445556665655543
No 26
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=33.73 E-value=33 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039340 252 CVSAFQACVKASKQFEELSSFYDLCK 277 (419)
Q Consensus 252 a~~aleiykrf~~Q~~~L~~Fy~~ck 277 (419)
-.+|=.||+||...+..++.+.+.|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34566689999999988888888776
No 27
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.13 E-value=1.4e+02 Score=31.89 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred CchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 28 ~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
...+|.=|.|||+....--+-|++..++--+........-.+|.|+.+++.. ..-=|+-+|-++--+|+.|...|-+|+
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSP-qe~EAl~altvLe~cmkncGekfH~ev 84 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSP-QEWEALQALTVLEYCMKNCGEKFHEEV 84 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4568899999999887544556777776666655544444589999999864 444678899999999999888887777
Q ss_pred HHH
Q 039340 108 AHA 110 (419)
Q Consensus 108 ~~~ 110 (419)
-+|
T Consensus 85 gkf 87 (594)
T KOG1086|consen 85 GKF 87 (594)
T ss_pred HHH
Confidence 444
No 28
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=28.98 E-value=78 Score=28.33 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=19.7
Q ss_pred ccCCCCCCCC-----HHHHH----HHHHhhcccCCCC
Q 039340 285 SEYPSVQKVS-----EELIE----TLQEFLKDQASFP 312 (419)
Q Consensus 285 i~iP~L~~~P-----~~ll~----~LEe~l~d~~~~~ 312 (419)
-++|.|+..| +.+++ .||+||++.-..+
T Consensus 89 ~~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~LL~~~ 125 (140)
T cd06895 89 RRLPSLPALPDILVSEEQLDSRKKQLENYLQNLLKIP 125 (140)
T ss_pred ccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHcCh
Confidence 3688888666 55666 4999999875443
No 29
>cd01204 IRS_PTB Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). This domain has a PH-like fold and is found in insulin receptor substrate molecules. IRS molecules have an N-terminal PH domain , which is followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs in the insulin receptor, IGF-I receptor and the IL-4 receptor.
Probab=26.66 E-value=14 Score=31.32 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=14.7
Q ss_pred HHHHHHhhhhhhhhhccc
Q 039340 401 QEQQLWLQNQNKIIAKHK 418 (419)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (419)
--=.||+|-+|.+||+||
T Consensus 73 G~GElWMq~dD~~vAqnm 90 (104)
T cd01204 73 GPGELWMQVDDAVVAQNM 90 (104)
T ss_pred CCCcEEEEcchHHHHHHH
Confidence 334689999999999987
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.33 E-value=80 Score=34.24 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHH
Q 039340 184 IMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKAS 263 (419)
Q Consensus 184 ~~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~aleiykrf~ 263 (419)
+++|..+...-+++.+-+.+.|...+=.. + |+ ||+.+.+-.+|-.||+||.
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~s--------------------f----I~-----fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLS--------------------F----IK-----FELRYKEIERARSIYERFV 201 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHH--------------------H----HH-----HHHHhhHHHHHHHHHHHHh
Confidence 56677777777777777777765432111 1 12 5666777777777888888
Q ss_pred HHHHHHHHHHHHhh
Q 039340 264 KQFEELSSFYDLCK 277 (419)
Q Consensus 264 ~Q~~~L~~Fy~~ck 277 (419)
-.|-++.+|.++++
T Consensus 202 ~~HP~v~~wikyar 215 (677)
T KOG1915|consen 202 LVHPKVSNWIKYAR 215 (677)
T ss_pred eecccHHHHHHHHH
Confidence 88888888777776
No 31
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=22.82 E-value=84 Score=23.50 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=25.4
Q ss_pred HHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 039340 239 LLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGR 283 (419)
Q Consensus 239 ~LLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~~~~ 283 (419)
.-|..||.|+..||.+.|.+.....+ ..|+.+|+.+
T Consensus 8 ~~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~R 43 (52)
T PF02042_consen 8 EDLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIPR 43 (52)
T ss_pred HHHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCCC
Confidence 34677999999999888875433332 4588888743
No 32
>PF08891 YfcL: YfcL protein; InterPro: IPR014987 This group of proteins are functionally uncharacterised. They are related to the short YfcL protein from Escherichia coli.
Probab=20.25 E-value=1.2e+02 Score=25.12 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=34.9
Q ss_pred HHHHhhhhhhhhhhhhcCCCC-------chHHHHHHhhcCCCCCCCChhHHHHHH
Q 039340 8 AIGAVKDQTSISLAKVSNANA-------SNVEVLILKATRHDEAPLDERYVDEIL 55 (419)
Q Consensus 8 a~g~~kd~~s~~~A~~~~~~~-------s~le~AV~KATs~de~pPKeKHVr~iI 55 (419)
|.|+|.-+-++..|.+-..+. ..++.++.+| +.+-.|++..+|..+-
T Consensus 26 A~GYLrGH~~lava~~E~~~~~~~~~l~~~v~~sL~~A-~~ELsp~Dq~lV~~lW 79 (85)
T PF08891_consen 26 ASGYLRGHFTLAVAELEQEGEHSLEALKARVEASLEKA-AGELSPADQALVNNLW 79 (85)
T ss_pred HHHHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHH
Confidence 567888888888777653221 4577899999 8888999998887654
No 33
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=20.16 E-value=73 Score=28.49 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-------C-------ccCccCCCCCCCCHHHHH---------HHHHhhcccCCCC
Q 039340 259 CVKASKQFEELSSFYDLCKGTG-------V-------GRTSEYPSVQKVSEELIE---------TLQEFLKDQASFP 312 (419)
Q Consensus 259 ykrf~~Q~~~L~~Fy~~ck~l~-------~-------~~~i~iP~L~~~P~~ll~---------~LEe~l~d~~~~~ 312 (419)
|+.|.+.+.+|.. |..--.+. . ....++|.|+.-+.+.+. .||+||++.-..+
T Consensus 45 y~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~ 120 (135)
T cd07296 45 FKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMP 120 (135)
T ss_pred hHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcCh
Confidence 6677777777776 22111111 1 111357888877766443 3999999775433
No 34
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=20.08 E-value=56 Score=26.48 Aligned_cols=10 Identities=30% Similarity=0.863 Sum_probs=8.4
Q ss_pred HHHHHHhcCC
Q 039340 91 LVLRIFQDGD 100 (419)
Q Consensus 91 vlHrLlreG~ 100 (419)
++|||||+|+
T Consensus 58 ILHrLLQng~ 67 (78)
T PF08832_consen 58 ILHRLLQNGN 67 (78)
T ss_dssp HHHHHHHCS-
T ss_pred HHHHHHhcCC
Confidence 6899999993
Done!