Query 039340
Match_columns 419
No_of_seqs 133 out of 454
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 3.9E-72 1.3E-76 554.3 29.7 283 2-308 5-299 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 4.9E-67 1.7E-71 519.8 24.9 265 29-307 27-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 8.2E-64 2.8E-68 488.0 25.6 243 29-284 27-269 (271)
4 1eyh_A Epsin; superhelix of he 99.4 1.3E-12 4.6E-17 115.7 10.5 118 27-149 2-120 (144)
5 1inz_A EPS15-interacting porte 99.4 1.9E-12 6.4E-17 115.2 9.8 118 27-149 20-138 (148)
6 1xgw_A Epsin 4; ENTH, enthopro 99.0 4.6E-09 1.6E-13 95.8 12.2 118 27-149 31-150 (176)
7 3onk_A Epsin-3, ENT3; helix, p 99.0 2E-09 6.9E-14 95.8 9.5 118 27-149 8-127 (150)
8 1vdy_A Hypothetical protein (R 98.2 1.5E-05 5E-10 70.0 11.2 115 31-149 12-128 (140)
9 3ldz_A STAM-1, signal transduc 96.0 0.025 8.6E-07 49.2 8.6 78 29-107 4-81 (140)
10 3g2s_A C-terminal fragment of 95.7 0.04 1.4E-06 48.5 8.9 80 27-107 8-87 (149)
11 1elk_A Target of MYB1; superhe 95.7 0.033 1.1E-06 49.3 8.4 79 29-107 15-93 (157)
12 3rru_A TOM1L1 protein; structu 95.7 0.035 1.2E-06 49.1 8.3 79 29-107 15-93 (152)
13 1x5b_A Signal transducing adap 95.6 0.038 1.3E-06 49.3 8.2 78 29-107 14-91 (163)
14 3zyq_A Hepatocyte growth facto 95.5 0.036 1.2E-06 51.9 8.2 80 27-107 5-84 (226)
15 1mhq_A ADP-ribosylation factor 95.3 0.042 1.4E-06 48.2 7.5 76 31-107 2-77 (148)
16 1juq_A ADP-ribosylation factor 95.3 0.04 1.4E-06 49.5 7.3 79 28-107 11-89 (171)
17 1dvp_A HRS, hepatocyte growth 94.5 0.096 3.3E-06 48.6 8.0 76 30-106 5-80 (220)
18 3bej_E Nuclear receptor coacti 59.7 4.1 0.00014 24.8 1.5 13 90-102 13-25 (26)
19 2prg_C Nuclear receptor coacti 31.1 20 0.00067 28.4 1.6 12 91-102 67-78 (88)
20 2i9c_A Hypothetical protein RP 21.4 75 0.0026 26.7 3.6 68 238-306 12-98 (123)
21 2cob_A LCOR protein; MLR2, KIA 20.2 93 0.0032 23.7 3.5 47 3-49 17-65 (70)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=3.9e-72 Score=554.30 Aligned_cols=283 Identities=18% Similarity=0.334 Sum_probs=239.5
Q ss_pred chhHHHHHHHhh-hhhhhhhhhhcCCCCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCC
Q 039340 2 PSKLKKAIGAVK-DQTSISLAKVSNANASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTR 80 (419)
Q Consensus 2 ~~~lr~a~g~~k-d~~s~~~A~~~~~~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~ 80 (419)
+++||+++|++| |+++. ++++||+|||+|+++|||+|||++||.+||++++++++|+|+|.+|+ .++
T Consensus 5 ~~~~~~~~~a~k~~~~~~-----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~-~~~ 72 (299)
T 1hx8_A 5 GQTINDRLLAARHSLAGQ-----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS-QNA 72 (299)
T ss_dssp -----------------C-----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH-TCS
T ss_pred hHHHHHHHHHHhhccchh-----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc-cCC
Confidence 478999999999 88774 46789999999999999999999999999999999999999999995 578
Q ss_pred chHHHHHHHHHHHHHHhcCCCcchHHHHHHHhcCCccccccCCcCCCC-----------CCCCchhHHHHHHHHHHHHHH
Q 039340 81 NWIVALKSLMLVLRIFQDGDPYFPREVAHAMKRGQKFLNLSNFRDDSN-----------SSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 81 ~wiValK~LivlHrLlreG~p~~~~e~~~~~~~~~~~l~L~~f~d~s~-----------~~~~~ys~fIR~Ya~YL~eRl 149 (419)
||+|+||+|||+|+|||||||+|++++. ++.++|++++|+|.++ +.+|+|+.|||+|++||++|+
T Consensus 73 ~w~va~K~LivlH~llreG~~~~~~~l~----~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~ 148 (299)
T 1hx8_A 73 NWVVVYKSLITTHHLMAYGNERFMQYLA----SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS 148 (299)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHH----HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHH----hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764 3467999999999764 245689999999999999996
Q ss_pred HhHHhcCCccccccccccCcccccCCCccccCCHHHHHHHHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHH
Q 039340 150 DCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLDRISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDL 229 (419)
Q Consensus 150 ~f~~~g~l~~~f~~~~~~~~~~~~~~~~~~~l~~~~LLd~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~L 229 (419)
.+|+..+++ |+.. +.+.+.+++++|++++||++++.||+||+++++|++.+.+.+|+|+++||++||+||++|
T Consensus 149 ~~f~~~~~d--~~~~-----~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~l 221 (299)
T 1hx8_A 149 LSYRAMAFD--FCKV-----KRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRL 221 (299)
T ss_dssp HHHHHHSSC--GGGC----------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC--cccc-----ccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 666554432 3221 112234678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhccc
Q 039340 230 YRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEELSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKDQ 308 (419)
Q Consensus 230 Y~~i~~gli~LLe~ffem~~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d~ 308 (419)
|+++|+||++|||+||+|++.||++||+||+||.+|+++|++||++|+++||++ ++||+|+++|++|+++|||||++.
T Consensus 222 Y~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~~ 299 (299)
T 1hx8_A 222 FACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLATL 299 (299)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999987 899999999999999999999873
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=4.9e-67 Score=519.77 Aligned_cols=265 Identities=19% Similarity=0.339 Sum_probs=224.2
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVA 108 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~ 108 (419)
++++++|+|||+|+++|||+|||++||.+||++++++.+++|+|.+|++ ++||+|+||+|||+|+|||||||+|++++
T Consensus 27 s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~-~~~w~vv~KaLivlH~llreG~~~~l~~~- 104 (310)
T 3zym_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQYL- 104 (310)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHH-
T ss_pred cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 8999999999999999999999999999999999999999999999999 78999999999999999999999998765
Q ss_pred HHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhHHhcCCccccccccccCcccccCCCccccCCHHHHHH
Q 039340 109 HAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLD 188 (419)
Q Consensus 109 ~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g~l~~~f~~~~~~~~~~~~~~~~~~~l~~~~LLd 188 (419)
+++..+|+|++|+|++++++|+|+.|||+|++||++|+.+|+..+. +|.... ++ ...++++|++++||+
T Consensus 105 ---~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~--d~~~~~----~~--~~~~~r~~~~~~Ll~ 173 (310)
T 3zym_A 105 ---ASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAF--DFTKVK----RG--ADGVMRTMNTEKLLK 173 (310)
T ss_dssp ---HHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CTTTSC----CS--TTSHHHHCCHHHHHH
T ss_pred ---HhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCC--Cccccc----CC--CCCccccCCHHHHHH
Confidence 3344799999999987767899999999999999999997775333 232210 11 124678899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHH
Q 039340 189 RISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEE 268 (419)
Q Consensus 189 ~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~aleiykrf~~Q~~~ 268 (419)
+++.+|+||+++++|+|.+.+.+|+|+++||++||+||++||+++|+||++|||+||||++.||++||+||+||.+|+++
T Consensus 174 ~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~~da~~al~iykrf~~Q~e~ 253 (310)
T 3zym_A 174 TVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTR 253 (310)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccCccCCCCCCCCHHHHHHHHHhhcc
Q 039340 269 LSSFYDLCKGTGVGRTSEYPSVQKVSEELIETLQEFLKD 307 (419)
Q Consensus 269 L~~Fy~~ck~l~~~~~i~iP~L~~~P~~ll~~LEe~l~d 307 (419)
|.+||++||++|+.+. +||+|+++|++++..+|.-|.+
T Consensus 254 L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 254 ISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp HHHHHHHHHHTC-------------------CHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 9999999999998776 9999999999999998876654
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=8.2e-64 Score=488.03 Aligned_cols=243 Identities=21% Similarity=0.374 Sum_probs=221.3
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVA 108 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~ 108 (419)
++++++|+|||+|+++|||+|||++||.+||++++++.+++++|.+|++ ++||+|+||+|||+|+|||||||+|++++.
T Consensus 27 s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~-~~~w~v~~KaLivlH~llreG~~~~l~~~~ 105 (271)
T 3zyl_A 27 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT-NSSWVVVFKSLITTHHLMVYGNERFIQYLA 105 (271)
T ss_dssp HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 799999999999999999999999987653
Q ss_pred HHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHHHhHHhcCCccccccccccCcccccCCCccccCCHHHHHH
Q 039340 109 HAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERLDCFITGKLHKRFSNRGRRNGRIERSYAPVCEMKPIMLLD 188 (419)
Q Consensus 109 ~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl~f~~~g~l~~~f~~~~~~~~~~~~~~~~~~~l~~~~LLd 188 (419)
+++ .+|+|++|+|++++.+|+|+.|||+|++||++|+.+|+..+.+ |.... ++ ...++++|++++||+
T Consensus 106 ---~~~-~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d--~~~~k----~~--~~~~~r~~~~~~Ll~ 173 (271)
T 3zyl_A 106 ---SRN-TLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFD--FTKVK----RG--ADGVMRTMNTEKLLK 173 (271)
T ss_dssp ---HCS-CCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--TTTSC----CS--TTSHHHHCCHHHHHH
T ss_pred ---hCC-CeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCC--ccccC----CC--CCCccccCCHHHHHH
Confidence 344 7999999999877678999999999999999999977653332 32210 11 124678999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHH
Q 039340 189 RISNWQRLLDRAIGSKPTGAAKNNSLVQVSLYAIVQESFDLYRDISDALALLLDSFFHLQYHNCVSAFQACVKASKQFEE 268 (419)
Q Consensus 189 ~l~~lQ~Lid~ll~~~p~~~~~~N~li~~Al~lLvkDs~~LY~~i~~gli~LLe~ffem~~~da~~aleiykrf~~Q~~~ 268 (419)
+++.||+|||++++|+|.+.+.+|+|+++||++||+||++||+++|+||++|||+||||++.||++||+||+||.+|+++
T Consensus 174 ~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~~Q~~~ 253 (271)
T 3zyl_A 174 TVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTR 253 (271)
T ss_dssp HHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccC
Q 039340 269 LSSFYDLCKGTGVGRT 284 (419)
Q Consensus 269 L~~Fy~~ck~l~~~~~ 284 (419)
|.+||++||++|+++.
T Consensus 254 L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 254 ISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCcCcC
Confidence 9999999999999863
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.39 E-value=1.3e-12 Score=115.68 Aligned_cols=118 Identities=22% Similarity=0.216 Sum_probs=98.0
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccC-CchHHHHHHHHHHHHHHhcCCCcchH
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKT-RNWIVALKSLMLVLRIFQDGDPYFPR 105 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t-~~wiValK~LivlHrLlreG~p~~~~ 105 (419)
+.++.|+.|..||+.+..+|+.+++..|..+|++. ..+..++..|.+||... ++|.+++|+|+|+|.||+.|.+.|..
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 46889999999999999999999999999999986 45667999999999873 58999999999999999999999987
Q ss_pred HHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHH
Q 039340 106 EVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 106 e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl 149 (419)
++... -..+..|..|.-.. .++.+.|..||.++++|.+-|
T Consensus 81 ~~~~~---~~~i~~L~~F~y~d-~~g~D~G~~VR~kak~l~~Ll 120 (144)
T 1eyh_A 81 QCKEN---MYAVQTLKDFQYVD-RDGKDQGVNVREKAKQLVALL 120 (144)
T ss_dssp HHHHT---HHHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHh---hHHHhhhccceeeC-CCccchHHHHHHHHHHHHHHH
Confidence 76432 12366777764211 246689999999999998765
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.36 E-value=1.9e-12 Score=115.20 Aligned_cols=118 Identities=22% Similarity=0.220 Sum_probs=97.5
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccC-CchHHHHHHHHHHHHHHhcCCCcchH
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKT-RNWIVALKSLMLVLRIFQDGDPYFPR 105 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t-~~wiValK~LivlHrLlreG~p~~~~ 105 (419)
+.++.|+.|..||+.+..+|+.+++..|..+|++. ..+..++..|.+||... ++|.+++|+|+|+|.|++.|.+.|..
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~ 98 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 98 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHH
Confidence 45889999999999999999999999999999996 44667999999999973 58999999999999999999999987
Q ss_pred HHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHH
Q 039340 106 EVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 106 e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl 149 (419)
++... -..+..|..|.-- ..++.+.|..||.++++|.+-|
T Consensus 99 ~~r~~---~~~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL 138 (148)
T 1inz_A 99 QCKEN---MYAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALL 138 (148)
T ss_dssp HHHHT---HHHHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---HHHHHhhcceeee-CCCCcCchHHHHHHHHHHHHHh
Confidence 76432 1235566665321 1245688999999999999875
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=98.96 E-value=4.6e-09 Score=95.75 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=95.6
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhh-cc-CCchHHHHHHHHHHHHHHhcCCCcch
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRI-GK-TRNWIVALKSLMLVLRIFQDGDPYFP 104 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL-~~-t~~wiValK~LivlHrLlreG~p~~~ 104 (419)
+.++.|+.|..||+.+..+|..+++..|..+|++.. .+..++..|.+|+ .. .++|.+++|+|+|++-||+.|.+.|.
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~-~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv 109 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYE-QFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVV 109 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTT-THHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChh-hHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHH
Confidence 568999999999999999999999999999999975 4567999999996 43 47999999999999999999999988
Q ss_pred HHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHH
Q 039340 105 REVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 105 ~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl 149 (419)
+++...+ ..+-.|..|.-- ...+.|.+..||..++.|.+-|
T Consensus 110 ~~~r~~i---~~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL 150 (176)
T 1xgw_A 110 TSAREHI---YDLRSLENYHFV-DEHGKDQGINIRQKVKELVEFA 150 (176)
T ss_dssp HHHHHTH---HHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHhH---HHHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHH
Confidence 7763221 123346666421 1246789999999999998765
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=98.96 E-value=2e-09 Score=95.82 Aligned_cols=118 Identities=21% Similarity=0.187 Sum_probs=95.0
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccC--CchHHHHHHHHHHHHHHhcCCCcch
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKT--RNWIVALKSLMLVLRIFQDGDPYFP 104 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t--~~wiValK~LivlHrLlreG~p~~~ 104 (419)
+.++.|+-|..||+.+..+|..+++.+|-.+|++... +..++..|.+||.+. ++|.+++|+|+|++-|++.|.+.|.
T Consensus 8 ~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~-~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv 86 (150)
T 3onk_A 8 NYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFRE-REEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFI 86 (150)
T ss_dssp CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHH-HHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5689999999999999999999999999999998644 567899999999863 4899999999999999999999988
Q ss_pred HHHHHHHhcCCccccccCCcCCCCCCCCchhHHHHHHHHHHHHHH
Q 039340 105 REVAHAMKRGQKFLNLSNFRDDSNSSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 105 ~e~~~~~~~~~~~l~L~~f~d~s~~~~~~ys~fIR~Ya~YL~eRl 149 (419)
.++..+. ..+-.|..|.-.. ..+.+.+.-||..|+.|.+-|
T Consensus 87 ~~~r~~~---~~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 87 DDTRNSI---NLIRILETFHYID-SQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp HHHHTTH---HHHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHhhhcccccC-CCCCchHHHHHHHHHHHHHHH
Confidence 7763221 1233356654221 235688999999999998765
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.15 E-value=1.5e-05 Score=70.05 Aligned_cols=115 Identities=21% Similarity=0.189 Sum_probs=91.6
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCc-cHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKV-YAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREVAH 109 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~-~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~~~ 109 (419)
-+..|.+||+.++.||=-==..+|-..|+.++. .+..++..|.+||.. ++|.|.+|+|-+|-.|++.|++.|..++.+
T Consensus 12 ~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 12 RSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDN-KSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcC-CCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 356799999999877756667789999988764 357899999999997 689999999999999999999999887753
Q ss_pred HHhcCCccccccCCcCCCC-CCCCchhHHHHHHHHHHHHHH
Q 039340 110 AMKRGQKFLNLSNFRDDSN-SSPWDYTAFVRTFALYLDERL 149 (419)
Q Consensus 110 ~~~~~~~~l~L~~f~d~s~-~~~~~ys~fIR~Ya~YL~eRl 149 (419)
.. ..+-.+.+|..-.. ..|.+.+..||.-|+=|.+-|
T Consensus 91 ~~---~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NS---VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TT---HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hH---HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 22 23556677775432 246789999999999888764
No 9
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.98 E-value=0.025 Score=49.16 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=68.9
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
+.++..|.|||+....-|+--.+-.|.-.+...+.....++++|.+||.. +|.-|++-+|.++.-++..+.+.|..++
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNcG~~f~~ev 81 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNH-KDPHVAMQALTLLGACVSNCGKIFHLEV 81 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56889999999999888999999999888888777778899999999986 7899999999999999999887776554
No 10
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.73 E-value=0.04 Score=48.52 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=70.7
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHH
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPRE 106 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e 106 (419)
..+.++..|.|||+....-|+--.+-.|.-.+...+.....++++|.+|+.. +|.-|++-+|.++.-++..+.+.|..+
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4477999999999999988999999999888888777778899999999985 899999999999999999988888655
Q ss_pred H
Q 039340 107 V 107 (419)
Q Consensus 107 ~ 107 (419)
+
T Consensus 87 i 87 (149)
T 3g2s_A 87 V 87 (149)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.71 E-value=0.033 Score=49.34 Aligned_cols=79 Identities=22% Similarity=0.140 Sum_probs=68.1
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
+.++..|.|||+....-|+--.+-.|.-.+...+.....++++|.+||...+|.-|++-+|.++--++..+.+.|..++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4789999999999988888888888888877777777889999999997547899999999999999999887776554
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.67 E-value=0.035 Score=49.11 Aligned_cols=79 Identities=24% Similarity=0.181 Sum_probs=69.1
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
+.++..|.|||+....-|+--.+-.|.-.+...+.....++++|.+||...+|..|++-+|.++--++..+...|..++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6789999999999988889888888887777777777889999999998546888888899999999999988887665
No 13
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.56 E-value=0.038 Score=49.29 Aligned_cols=78 Identities=26% Similarity=0.230 Sum_probs=67.7
Q ss_pred chHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 29 SNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 29 s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
+.++..|.|||+....-|+--.+-.|.-.+...+.....++++|.+||.. +|.-|++-+|.++--++..+.+.|..++
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56899999999999888899999888888877777778899999999986 7888999999999999999777776544
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=95.51 E-value=0.036 Score=51.94 Aligned_cols=80 Identities=24% Similarity=0.202 Sum_probs=68.7
Q ss_pred CCchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHH
Q 039340 27 NASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPRE 106 (419)
Q Consensus 27 ~~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e 106 (419)
+.+.++..|.|||+.....|+--.+-.|.-.+...+......+++|.+||.. +|.-|++-+|.++--++..+.+.|..+
T Consensus 5 ~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~-~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 5 GSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND-KNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp --CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 4578999999999999988999999998888877777778889999999985 899999999999999999987777654
Q ss_pred H
Q 039340 107 V 107 (419)
Q Consensus 107 ~ 107 (419)
+
T Consensus 84 i 84 (226)
T 3zyq_A 84 V 84 (226)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.30 E-value=0.042 Score=48.25 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 31 VEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 31 le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
++..|.|||+....-|+--.+-.|.-.+...+.....++++|.+||.. +|.-|++-+|.++--++..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 688999999999888999888888888877776777899999999985 8999999999999999999877776554
No 16
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.26 E-value=0.04 Score=49.54 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=68.4
Q ss_pred CchHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHHH
Q 039340 28 ASNVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPREV 107 (419)
Q Consensus 28 ~s~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e~ 107 (419)
.+.++..|.|||+....-|+--.+-.|.-.+.........++++|.+|+.. +|.-|++-+|.++--++..+.+.|..++
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~-~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQS-PQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 367999999999999888999999999888877777778899999999985 7999999999999999998777776544
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.51 E-value=0.096 Score=48.63 Aligned_cols=76 Identities=18% Similarity=0.068 Sum_probs=66.6
Q ss_pred hHHHHHHhhcCCCCCCCChhHHHHHHHHhhCCCccHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHhcCCCcchHH
Q 039340 30 NVEVLILKATRHDEAPLDERYVDEILQLIASSKVYAVACAQVISKRIGKTRNWIVALKSLMLVLRIFQDGDPYFPRE 106 (419)
Q Consensus 30 ~le~AV~KATs~de~pPKeKHVr~iI~~T~~~~~~~~~~~~~L~~RL~~t~~wiValK~LivlHrLlreG~p~~~~e 106 (419)
.++..|.|||+....-|+-..+-+|.-.+..++......+++|.+||.. +|.-|++-+|.++--++..+.+.|..+
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~-~n~~~~l~aL~Lle~~vkNcG~~f~~e 80 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPVHEE 80 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4899999999999888999999998888887777788899999999986 899999999999999999876666544
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=59.73 E-value=4.1 Score=24.80 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCCc
Q 039340 90 MLVLRIFQDGDPY 102 (419)
Q Consensus 90 ivlHrLlreG~p~ 102 (419)
-++|||+|+|.|.
T Consensus 13 kILHrLLQ~~sP~ 25 (26)
T 3bej_E 13 KILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHHcCCCC
Confidence 3689999999773
No 19
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=31.15 E-value=20 Score=28.40 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=10.4
Q ss_pred HHHHHHhcCCCc
Q 039340 91 LVLRIFQDGDPY 102 (419)
Q Consensus 91 vlHrLlreG~p~ 102 (419)
++|||||+|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 689999999774
No 20
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=21.40 E-value=75 Score=26.75 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=43.8
Q ss_pred HHHHHHhhhcC--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCc-----cCccCCC-----------CCCCCHHHH
Q 039340 238 ALLLDSFFHLQ--YHNCVSAFQACVKASKQFEELSSFYDLCKGT-GVG-----RTSEYPS-----------VQKVSEELI 298 (419)
Q Consensus 238 i~LLe~ffem~--~~da~~aleiykrf~~Q~~~L~~Fy~~ck~l-~~~-----~~i~iP~-----------L~~~P~~ll 298 (419)
-.|+++|-+.. ..+|..+.+ +.+|.+++.++.++|+.-+.. |=. .+.+-|+ |...|+.=.
T Consensus 12 ~~Lv~~F~~~~i~q~eA~~~~d-~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA~~~L~~~p~~A~ 90 (123)
T 2i9c_A 12 QDLVALFAKVTVEQDDALLGNQ-ISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAAKLTLAVAPVKAR 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHHHHHHhhChHHHH
Confidence 34666676654 556677766 689999999999999998854 312 2333332 445566666
Q ss_pred HHHHHhhc
Q 039340 299 ETLQEFLK 306 (419)
Q Consensus 299 ~~LEe~l~ 306 (419)
..||+-..
T Consensus 91 ~vLe~ia~ 98 (123)
T 2i9c_A 91 EQLEAIVS 98 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666433
No 21
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=20.21 E-value=93 Score=23.66 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=39.0
Q ss_pred hhHHHHHHHhhhh-hhhhh-hhhcCCCCchHHHHHHhhcCCCCCCCChh
Q 039340 3 SKLKKAIGAVKDQ-TSISL-AKVSNANASNVEVLILKATRHDEAPLDER 49 (419)
Q Consensus 3 ~~lr~a~g~~kd~-~s~~~-A~~~~~~~s~le~AV~KATs~de~pPKeK 49 (419)
..|-.|+-+|+.- .|+.. |+..|-..+.|+-=|++-+.....|||.|
T Consensus 17 ~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~ 65 (70)
T 2cob_A 17 EILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKK 65 (70)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCcccc
Confidence 3578899999887 78876 47777777889999999999999999875
Done!